Query 027026
Match_columns 229
No_of_seqs 241 out of 1762
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 6.8E-27 1.5E-31 187.5 13.6 102 118-229 34-137 (137)
2 PRK11597 heat shock chaperone 99.9 2.1E-26 4.6E-31 185.4 14.0 103 117-229 31-135 (142)
3 COG0071 IbpA Molecular chapero 99.9 5.8E-26 1.3E-30 183.7 14.9 107 116-228 38-145 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 5E-24 1.1E-28 159.4 12.1 91 120-216 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 3.6E-23 7.7E-28 154.8 12.3 92 120-216 2-93 (93)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 1.8E-22 3.8E-27 152.9 13.5 100 122-229 1-102 (102)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 1.9E-22 4E-27 150.6 12.9 89 119-216 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.3E-21 2.8E-26 145.1 11.2 82 122-216 4-86 (86)
9 cd06479 ACD_HspB7_like Alpha c 99.9 1.6E-21 3.4E-26 143.2 10.0 79 122-216 2-81 (81)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 4.1E-21 9E-26 141.5 10.9 82 122-216 1-83 (83)
11 cd06498 ACD_alphaB-crystallin_ 99.8 1E-20 2.2E-25 139.8 11.0 82 123-217 2-84 (84)
12 cd06475 ACD_HspB1_like Alpha c 99.8 2.1E-20 4.5E-25 138.6 10.6 82 121-215 3-85 (86)
13 cd06481 ACD_HspB9_like Alpha c 99.8 4.3E-20 9.3E-25 137.2 10.4 83 125-216 4-87 (87)
14 cd06476 ACD_HspB2_like Alpha c 99.8 5.2E-20 1.1E-24 135.7 10.4 80 124-216 3-83 (83)
15 cd06464 ACD_sHsps-like Alpha-c 99.8 2.4E-19 5.2E-24 130.8 11.5 88 122-216 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 2E-19 4.3E-24 133.7 10.3 80 126-215 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 4.5E-19 9.8E-24 130.7 10.3 79 124-215 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 4.8E-19 1E-23 130.1 9.7 77 127-216 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 2.1E-19 4.5E-24 152.2 7.6 112 114-229 80-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 4.3E-16 9.3E-21 116.7 9.4 80 124-216 11-91 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.5 2.8E-13 6.2E-18 95.1 10.5 80 123-216 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.5 1.6E-13 3.6E-18 114.0 10.7 96 119-227 63-162 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.3 4.1E-11 8.9E-16 86.1 9.3 70 124-219 2-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.0 2.1E-09 4.5E-14 89.1 10.1 79 118-220 91-171 (177)
25 cd06463 p23_like Proteins cont 99.0 5.8E-09 1.2E-13 74.6 9.4 75 124-219 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 5.6E-08 1.2E-12 70.5 8.2 77 122-219 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 7.7E-06 1.7E-10 57.8 12.4 77 119-216 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.2 3.2E-05 7E-10 59.1 10.8 78 119-218 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.0 7.3E-05 1.6E-09 54.5 8.8 77 122-219 1-77 (84)
30 PF08190 PIH1: pre-RNA process 97.9 4E-05 8.6E-10 68.9 8.7 65 127-215 260-327 (328)
31 cd06467 p23_NUDC_like p23_like 97.9 0.00011 2.3E-09 53.3 9.2 75 121-219 1-77 (85)
32 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00029 6.3E-09 51.6 9.6 75 121-219 1-77 (85)
33 cd06468 p23_CacyBP p23_like do 97.7 0.00061 1.3E-08 50.2 10.4 79 120-219 3-85 (92)
34 cd06488 p23_melusin_like p23_l 97.6 0.0009 1.9E-08 49.3 9.8 79 120-219 2-80 (87)
35 cd06494 p23_NUDCD2_like p23-li 97.3 0.0033 7.3E-08 47.1 9.9 77 118-219 5-83 (93)
36 cd00237 p23 p23 binds heat sho 97.1 0.0097 2.1E-07 45.7 10.7 78 119-219 2-79 (106)
37 KOG1309 Suppressor of G2 allel 96.4 0.013 2.9E-07 49.0 7.1 80 118-218 3-82 (196)
38 PLN03088 SGT1, suppressor of 96.3 0.024 5.1E-07 52.1 9.1 81 118-219 156-236 (356)
39 cd06492 p23_mNUDC_like p23-lik 96.2 0.069 1.5E-06 39.4 9.2 73 123-219 3-79 (87)
40 cd06495 p23_NUDCD3_like p23-li 96.0 0.16 3.5E-06 38.7 11.0 81 118-219 4-87 (102)
41 cd06490 p23_NCB5OR p23_like do 95.7 0.18 3.8E-06 37.1 9.7 76 121-219 1-80 (87)
42 PF13349 DUF4097: Domain of un 86.9 6.3 0.00014 31.3 8.9 84 118-214 65-148 (166)
43 KOG3158 HSP90 co-chaperone p23 86.9 2.3 5E-05 35.5 6.3 79 118-219 7-85 (180)
44 COG5091 SGT1 Suppressor of G2 77.8 1.2 2.5E-05 40.1 1.3 82 117-218 175-256 (368)
45 cd06482 ACD_HspB10 Alpha cryst 76.2 6.2 0.00013 29.1 4.6 34 184-218 8-41 (87)
46 KOG2265 Nuclear distribution p 75.2 23 0.00049 29.7 8.2 80 116-219 16-97 (179)
47 cd06470 ACD_IbpA-B_like Alpha- 72.7 8.7 0.00019 28.0 4.7 35 184-219 11-45 (90)
48 cd06476 ACD_HspB2_like Alpha c 70.9 7.8 0.00017 28.1 4.0 33 184-217 7-39 (83)
49 PRK05518 rpl6p 50S ribosomal p 70.2 20 0.00044 30.0 6.9 46 140-215 12-57 (180)
50 cd06477 ACD_HspB3_Like Alpha c 70.1 11 0.00023 27.5 4.6 33 185-218 8-40 (83)
51 cd06478 ACD_HspB4-5-6 Alpha-cr 68.1 11 0.00024 27.1 4.4 33 184-217 7-39 (83)
52 cd06497 ACD_alphaA-crystallin_ 67.9 13 0.00028 27.1 4.7 33 184-217 10-42 (86)
53 PF01954 DUF104: Protein of un 67.7 5.5 0.00012 27.4 2.5 30 199-228 3-32 (60)
54 TIGR03653 arch_L6P archaeal ri 67.6 27 0.00058 29.0 7.1 46 141-216 7-52 (170)
55 cd06479 ACD_HspB7_like Alpha c 66.7 15 0.00032 26.6 4.8 34 184-218 8-41 (81)
56 cd06471 ACD_LpsHSP_like Group 66.7 11 0.00023 27.4 4.1 31 127-157 61-91 (93)
57 cd06464 ACD_sHsps-like Alpha-c 66.4 13 0.00028 25.9 4.4 32 126-157 54-86 (88)
58 KOG1667 Zn2+-binding protein M 65.2 36 0.00077 30.4 7.6 81 120-220 216-296 (320)
59 cd06526 metazoan_ACD Alpha-cry 65.0 14 0.0003 26.4 4.4 34 185-219 8-41 (83)
60 TIGR03654 L6_bact ribosomal pr 64.1 30 0.00065 28.7 6.8 44 141-215 11-54 (175)
61 PRK10743 heat shock protein Ib 62.8 17 0.00036 29.0 4.9 32 186-218 47-78 (137)
62 cd06472 ACD_ScHsp26_like Alpha 61.8 15 0.00032 26.7 4.1 31 127-157 59-90 (92)
63 PRK05498 rplF 50S ribosomal pr 61.6 32 0.0007 28.6 6.5 44 141-215 12-55 (178)
64 PTZ00027 60S ribosomal protein 61.5 27 0.00059 29.5 6.1 48 140-215 12-59 (190)
65 cd06498 ACD_alphaB-crystallin_ 59.5 18 0.0004 26.2 4.2 32 184-216 7-38 (84)
66 cd06475 ACD_HspB1_like Alpha c 58.8 26 0.00056 25.4 4.9 34 184-218 10-43 (86)
67 PF04972 BON: BON domain; Int 57.5 20 0.00044 23.9 3.9 25 137-161 12-36 (64)
68 cd06481 ACD_HspB9_like Alpha c 57.3 25 0.00053 25.6 4.6 34 184-218 7-40 (87)
69 PF00011 HSP20: Hsp20/alpha cr 56.2 33 0.00071 25.0 5.2 33 184-217 7-39 (102)
70 cd06469 p23_DYX1C1_like p23_li 55.1 35 0.00076 23.5 4.9 32 128-159 36-68 (78)
71 PRK11597 heat shock chaperone 54.4 27 0.00058 28.1 4.7 32 186-218 45-76 (142)
72 PTZ00179 60S ribosomal protein 53.5 43 0.00093 28.2 6.0 47 141-215 12-58 (189)
73 KOG3260 Calcyclin-binding prot 53.5 47 0.001 28.2 6.0 78 121-219 77-155 (224)
74 cd06480 ACD_HspB8_like Alpha-c 53.3 28 0.0006 25.9 4.3 30 128-157 58-89 (91)
75 PF08308 PEGA: PEGA domain; I 52.0 53 0.0012 22.3 5.4 43 118-160 24-68 (71)
76 cd00298 ACD_sHsps_p23-like Thi 52.0 31 0.00067 22.7 4.2 32 127-158 47-79 (80)
77 PF12992 DUF3876: Domain of un 51.5 67 0.0014 24.1 6.1 42 116-157 23-69 (95)
78 CHL00140 rpl6 ribosomal protei 50.6 50 0.0011 27.5 5.9 44 141-215 12-55 (178)
79 PF14913 DPCD: DPCD protein fa 50.2 1.2E+02 0.0027 25.7 8.1 77 118-218 86-170 (194)
80 PF14730 DUF4468: Domain of un 48.0 92 0.002 22.6 6.4 18 199-216 68-85 (91)
81 PF00347 Ribosomal_L6: Ribosom 47.1 54 0.0012 22.6 4.9 44 141-215 2-47 (77)
82 COG0071 IbpA Molecular chapero 44.3 48 0.001 26.3 4.7 32 186-218 52-83 (146)
83 cd06463 p23_like Proteins cont 44.0 61 0.0013 21.9 4.8 34 127-160 40-74 (84)
84 PRK10568 periplasmic protein; 42.5 54 0.0012 27.7 5.0 25 137-161 73-97 (203)
85 cd00503 Frataxin Frataxin is a 37.7 53 0.0012 25.0 3.8 17 199-215 28-44 (105)
86 COG0097 RplF Ribosomal protein 35.8 1.3E+02 0.0027 25.3 6.0 21 139-159 10-30 (178)
87 PF10988 DUF2807: Protein of u 35.2 80 0.0017 25.3 4.8 41 187-228 22-62 (181)
88 PRK14290 chaperone protein Dna 35.0 3.1E+02 0.0067 25.2 9.1 42 185-226 273-314 (365)
89 cd06467 p23_NUDC_like p23_like 34.6 1.6E+02 0.0034 20.4 5.8 31 185-215 9-39 (85)
90 COG4004 Uncharacterized protei 32.9 93 0.002 23.4 4.2 34 121-158 26-59 (96)
91 PRK00446 cyaY frataxin-like pr 32.9 62 0.0013 24.7 3.5 16 201-216 29-44 (105)
92 KOG3413 Mitochondrial matrix p 31.0 22 0.00048 29.0 0.8 24 192-215 65-88 (156)
93 TIGR03421 FeS_CyaY iron donor 30.7 67 0.0015 24.3 3.4 17 200-216 26-42 (102)
94 cd02178 GH16_beta_agarase Beta 30.0 1.8E+02 0.0039 25.2 6.5 44 146-194 60-109 (258)
95 cd02175 GH16_lichenase lichena 28.3 1.8E+02 0.004 24.3 6.0 49 141-195 31-80 (212)
96 PLN02711 Probable galactinol-- 26.9 1.2E+02 0.0027 31.0 5.3 44 184-228 732-775 (777)
97 KOG3247 Uncharacterized conser 26.9 31 0.00067 32.8 1.1 76 118-219 3-81 (466)
98 cd06494 p23_NUDCD2_like p23-li 26.1 2.7E+02 0.0059 20.5 6.3 39 175-214 7-45 (93)
99 PF01491 Frataxin_Cyay: Fratax 25.8 1E+02 0.0022 23.5 3.6 18 199-216 30-47 (109)
100 PF12624 Chorein_N: N-terminal 25.4 89 0.0019 23.8 3.3 21 137-157 18-38 (118)
101 TIGR00251 conserved hypothetic 25.1 1.3E+02 0.0028 22.1 4.0 38 123-161 1-41 (87)
102 PRK11198 LysM domain/BON super 24.1 1.1E+02 0.0023 24.5 3.6 25 137-161 38-62 (147)
103 PF06964 Alpha-L-AF_C: Alpha-L 24.0 1.4E+02 0.0029 24.3 4.3 28 190-217 149-176 (177)
104 PRK14276 chaperone protein Dna 24.0 4.9E+02 0.011 24.1 8.5 40 187-226 275-314 (380)
105 PRK14299 chaperone protein Dna 23.4 4.9E+02 0.011 23.1 8.1 37 190-226 209-245 (291)
106 TIGR02934 nifT_nitrog probable 23.4 70 0.0015 22.6 2.1 22 206-227 9-30 (67)
107 KOG3591 Alpha crystallins [Pos 22.6 99 0.0022 25.7 3.2 29 133-161 120-150 (173)
108 TIGR03000 plancto_dom_1 Planct 21.8 2.4E+02 0.0052 20.3 4.6 25 131-159 4-28 (75)
109 PF08845 SymE_toxin: Toxin Sym 21.0 1.3E+02 0.0028 20.4 3.0 22 135-156 34-56 (57)
110 COG4456 VagC Virulence-associa 20.9 1.3E+02 0.0028 21.6 3.1 24 133-159 19-42 (74)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=6.8e-27 Score=187.48 Aligned_cols=102 Identities=21% Similarity=0.471 Sum_probs=87.9
Q ss_pred CcCeEEEE-eCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCc
Q 027026 118 RTPWAIRE-TENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 196 (229)
Q Consensus 118 ~p~~dI~E-~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v 196 (229)
.|++||.+ ++++|+|.++|||++++||+|++++|.|+|+|+++... +++++++.|+++|+|+|+|.||++|
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~--------~~~~~~~~Er~~g~F~R~~~LP~~V 105 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQ--------KERTYLYQGIAERNFERKFQLAENI 105 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccc--------cCCcEEEEEEECCEEEEEEECCCCc
Confidence 48899994 89999999999999999999999999999999975421 3467899999999999999999999
Q ss_pred ccCceEEEEECCEEEEEEeccCC-CCCceEeecC
Q 027026 197 EFEKIQAEVKDGVLYITIPKASS-TAKIVDINVQ 229 (229)
Q Consensus 197 d~~~IkA~~~nGvL~ItiPK~~~-~~k~i~I~iq 229 (229)
|.+ +|+|+||||+|++||.+. ..+...|+|+
T Consensus 106 d~~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 106 HVR--GANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred ccC--cCEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 998 599999999999999643 3445556654
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.94 E-value=2.1e-26 Score=185.45 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=87.7
Q ss_pred CCcCeEEEE-eCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCC
Q 027026 117 GRTPWAIRE-TENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDN 195 (229)
Q Consensus 117 ~~p~~dI~E-~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~ 195 (229)
..|++||+| ++++|+|.++|||++++||+|.+++|.|+|+|+++... +++.+++.|+++|.|.|+|.||++
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~--------~~~~~~~~Er~~g~F~R~f~LP~~ 102 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPE--------KEVKWLHQGLVNQPFSLSFTLAEN 102 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEcccc--------CCCcEEEEEEeCcEEEEEEECCCC
Confidence 468899998 57899999999999999999999999999999975321 346899999999999999999999
Q ss_pred cccCceEEEEECCEEEEEEeccC-CCCCceEeecC
Q 027026 196 VEFEKIQAEVKDGVLYITIPKAS-STAKIVDINVQ 229 (229)
Q Consensus 196 vd~~~IkA~~~nGvL~ItiPK~~-~~~k~i~I~iq 229 (229)
||.+ +|+|+||||+|+|||.. +..++..|+|+
T Consensus 103 vd~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 103 MEVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred cccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 9998 79999999999999974 23344455543
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.8e-26 Score=183.65 Aligned_cols=107 Identities=33% Similarity=0.619 Sum_probs=94.3
Q ss_pred CCCcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCC
Q 027026 116 RGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDN 195 (229)
Q Consensus 116 ~~~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~ 195 (229)
.+.|++||+|++++|+|.++|||++++||+|.++++.|+|+|++..+.+. ++..+.+.++.+|.|+|+|.||+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~------~~~~~~~~e~~~~~f~r~~~Lp~~ 111 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEE------EEEGYLRRERAYGEFERTFRLPEK 111 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccc------cCCceEEEEEEeeeEEEEEECccc
Confidence 36899999999999999999999999999999999999999999763322 467889999999999999999999
Q ss_pred cccCceEEEEECCEEEEEEeccCCCC-CceEeec
Q 027026 196 VEFEKIQAEVKDGVLYITIPKASSTA-KIVDINV 228 (229)
Q Consensus 196 vd~~~IkA~~~nGvL~ItiPK~~~~~-k~i~I~i 228 (229)
|+.+.|+|+|+||+|+|++||.+++. +...|.|
T Consensus 112 v~~~~~~A~~~nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 112 VDPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred ccccceeeEeeCcEEEEEEeccccccccCceeec
Confidence 99999999999999999999998752 3444443
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.91 E-value=5e-24 Score=159.41 Aligned_cols=91 Identities=31% Similarity=0.540 Sum_probs=82.5
Q ss_pred CeEEEEeCCEEEEEEEcCCCCCCceEEEEECC-EEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCccc
Q 027026 120 PWAIRETENDYKIRLDVPGMSRNDVKVRVEES-MLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEF 198 (229)
Q Consensus 120 ~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~-~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~ 198 (229)
.+||+|++++|+|.++|||++++||+|+++++ .|+|+|++...... +.+.++..|+.+|.|.|+|.||++|+.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~------~~~~~~~~e~~~g~f~r~i~LP~~v~~ 74 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEK------KGDDWHRVERSSGRFVRRFRLPENADA 74 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccc------cCCCEEEEEEeccEEEEEEECCCCCCH
Confidence 37999999999999999999999999999874 89999998654332 346788899999999999999999999
Q ss_pred CceEEEEECCEEEEEEec
Q 027026 199 EKIQAEVKDGVLYITIPK 216 (229)
Q Consensus 199 ~~IkA~~~nGvL~ItiPK 216 (229)
++|+|.|+||+|+|++||
T Consensus 75 ~~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 75 DEVKAFLENGVLTVTVPK 92 (92)
T ss_pred HHCEEEEECCEEEEEecC
Confidence 999999999999999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.90 E-value=3.6e-23 Score=154.80 Aligned_cols=92 Identities=33% Similarity=0.586 Sum_probs=82.7
Q ss_pred CeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccC
Q 027026 120 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFE 199 (229)
Q Consensus 120 ~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
++||+|+++.|+|.++|||++++||+|.++++.|+|+|+++...+.. ++.+.+...|+.+|+|.|.|.|| +++.+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~----~~~~~~~~~e~~~g~f~r~~~lp-~v~~~ 76 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEK----DKKGNYIRRERYYGSFSRSFYLP-NVDEE 76 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccc----cccCCEEEEeeeccEEEEEEECC-CCCHH
Confidence 68999999999999999999999999999999999999987643321 12357888999999999999999 79999
Q ss_pred ceEEEEECCEEEEEEec
Q 027026 200 KIQAEVKDGVLYITIPK 216 (229)
Q Consensus 200 ~IkA~~~nGvL~ItiPK 216 (229)
.|+|+|+||+|+|++||
T Consensus 77 ~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 77 EIKAKYENGVLKITLPK 93 (93)
T ss_pred HCEEEEECCEEEEEEcC
Confidence 99999999999999998
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.89 E-value=1.8e-22 Score=152.87 Aligned_cols=100 Identities=33% Similarity=0.658 Sum_probs=81.3
Q ss_pred EEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCce
Q 027026 122 AIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKI 201 (229)
Q Consensus 122 dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I 201 (229)
||.|++++|.|.++|||+.++||+|+++++.|+|+|++.... ++..+.+.+++++.|.+.|.||+++|.++|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~--------~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i 72 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEE--------EDDRYYRSERRYGSFERSIRLPEDVDPDKI 72 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEE--------CTTCEEEE-S-SEEEEEEEE-STTB-GGG-
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeee--------eeeeeeecccccceEEEEEcCCCcCCcceE
Confidence 799999999999999999999999999999999999998211 345677888999999999999999999999
Q ss_pred EEEEECCEEEEEEeccCCCC--CceEeecC
Q 027026 202 QAEVKDGVLYITIPKASSTA--KIVDINVQ 229 (229)
Q Consensus 202 kA~~~nGvL~ItiPK~~~~~--k~i~I~iq 229 (229)
+|.|+||+|+|++||..... ....|+||
T Consensus 73 ~a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 73 KASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 99999999999999988653 46667665
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.89 E-value=1.9e-22 Score=150.61 Aligned_cols=89 Identities=29% Similarity=0.533 Sum_probs=80.5
Q ss_pred cCeEEEEeC-CEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcc
Q 027026 119 TPWAIRETE-NDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 197 (229)
Q Consensus 119 p~~dI~E~~-d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd 197 (229)
|++||+|++ +.|+|.++|||++++||+|.++++.|+|+|+++...+ +++.+..+|+.+|.|.|+|.||.+++
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~-------~~~~~~~~e~~~g~f~R~~~LP~~vd 73 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEEN-------EEREYLHRGIAKRAFERSFNLADHVK 73 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccc-------CCCcEEEEEEeceEEEEEEECCCCce
Confidence 679999975 9999999999999999999999999999999876543 24678889999999999999999998
Q ss_pred cCceEEEEECCEEEEEEec
Q 027026 198 FEKIQAEVKDGVLYITIPK 216 (229)
Q Consensus 198 ~~~IkA~~~nGvL~ItiPK 216 (229)
.+ +|+|+||+|+|+||+
T Consensus 74 ~~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 74 VK--GAELENGLLTIDLER 90 (90)
T ss_pred EC--eeEEeCCEEEEEEEC
Confidence 75 999999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.87 E-value=1.3e-21 Score=145.14 Aligned_cols=82 Identities=27% Similarity=0.451 Sum_probs=71.5
Q ss_pred EEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCce
Q 027026 122 AIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKI 201 (229)
Q Consensus 122 dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I 201 (229)
+|.+++++|.|.++|||++++||+|.+++|.|+|+|++.... +++.+.. ..|.|+|.||++||.++|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~--------~~~~~~~-----~ef~R~~~LP~~Vd~~~i 70 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQ--------DDHGYIS-----REFHRRYRLPSNVDQSAI 70 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccee--------CCCCEEE-----EEEEEEEECCCCCChHHe
Confidence 799999999999999999999999999999999999864221 1233333 359999999999999999
Q ss_pred EEEE-ECCEEEEEEec
Q 027026 202 QAEV-KDGVLYITIPK 216 (229)
Q Consensus 202 kA~~-~nGvL~ItiPK 216 (229)
+|.| +||||+|++||
T Consensus 71 ~A~~~~dGvL~I~~PK 86 (86)
T cd06497 71 TCSLSADGMLTFSGPK 86 (86)
T ss_pred EEEeCCCCEEEEEecC
Confidence 9999 89999999998
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.86 E-value=1.6e-21 Score=143.15 Aligned_cols=79 Identities=20% Similarity=0.449 Sum_probs=71.7
Q ss_pred EEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCce
Q 027026 122 AIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKI 201 (229)
Q Consensus 122 dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I 201 (229)
||.|++++|.|.++|||++++||+|.+++|.|+|+|+++.. . +..+|+|.|+|.||++||.++|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~----------~------~~~~g~F~R~~~LP~~vd~e~v 65 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLAS----------D------GTVMNTFTHKCQLPEDVDPTSV 65 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEecc----------C------CCEEEEEEEEEECCCCcCHHHe
Confidence 68899999999999999999999999999999999987531 1 1257999999999999999999
Q ss_pred EEEE-ECCEEEEEEec
Q 027026 202 QAEV-KDGVLYITIPK 216 (229)
Q Consensus 202 kA~~-~nGvL~ItiPK 216 (229)
+|.| +||+|+|++++
T Consensus 66 ~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 66 SSSLGEDGTLTIKARR 81 (81)
T ss_pred EEEecCCCEEEEEecC
Confidence 9997 99999999985
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.86 E-value=4.1e-21 Score=141.46 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=70.4
Q ss_pred EEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCce
Q 027026 122 AIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKI 201 (229)
Q Consensus 122 dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I 201 (229)
+|.+++++|+|.++|||++++||+|.+++|.|+|+|++.... ++..+.. ..|.|+|.||.+||.++|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~--------~~~~~~~-----~ef~R~~~LP~~vd~~~i 67 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQ--------DEHGFIS-----REFHRRYRLPPGVDPAAI 67 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEc--------CCCCEEE-----EEEEEEEECCCCcChHHe
Confidence 478899999999999999999999999999999999864321 1223332 359999999999999999
Q ss_pred EEEE-ECCEEEEEEec
Q 027026 202 QAEV-KDGVLYITIPK 216 (229)
Q Consensus 202 kA~~-~nGvL~ItiPK 216 (229)
+|.| +||+|+|++||
T Consensus 68 ~A~~~~dGvL~I~~PK 83 (83)
T cd06478 68 TSSLSADGVLTISGPR 83 (83)
T ss_pred EEEECCCCEEEEEecC
Confidence 9999 69999999998
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.85 E-value=1e-20 Score=139.80 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=70.4
Q ss_pred EEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceE
Q 027026 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 202 (229)
Q Consensus 123 I~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~Ik 202 (229)
+.+++++|.|.++|||++++||+|.+++|.|+|+|++.... ++..+. .+.|.|+|.||++||.++|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~--------~~~~~~-----~~eF~R~~~LP~~vd~~~i~ 68 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQ--------DEHGFI-----SREFQRKYRIPADVDPLTIT 68 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEccee--------CCCCEE-----EEEEEEEEECCCCCChHHcE
Confidence 57789999999999999999999999999999999864321 122332 34799999999999999999
Q ss_pred EEEE-CCEEEEEEecc
Q 027026 203 AEVK-DGVLYITIPKA 217 (229)
Q Consensus 203 A~~~-nGvL~ItiPK~ 217 (229)
|+|+ ||+|+|++||+
T Consensus 69 A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 69 SSLSPDGVLTVCGPRK 84 (84)
T ss_pred EEeCCCCEEEEEEeCC
Confidence 9995 99999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.84 E-value=2.1e-20 Score=138.64 Aligned_cols=82 Identities=21% Similarity=0.430 Sum_probs=71.7
Q ss_pred eEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCc
Q 027026 121 WAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEK 200 (229)
Q Consensus 121 ~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~ 200 (229)
-||+|++++|.|.++|||+++++|+|.++++.|+|+|++.... ++..+ ..++|.|+|.||++||.++
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~--------~~~~~-----~~~~f~R~f~LP~~vd~~~ 69 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQ--------DEHGF-----VSRCFTRKYTLPPGVDPTA 69 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCc--------CCCCE-----EEEEEEEEEECCCCCCHHH
Confidence 5899999999999999999999999999999999999874321 11222 3469999999999999999
Q ss_pred eEEEEE-CCEEEEEEe
Q 027026 201 IQAEVK-DGVLYITIP 215 (229)
Q Consensus 201 IkA~~~-nGvL~ItiP 215 (229)
|+|.|+ ||+|+|++|
T Consensus 70 v~A~~~~dGvL~I~lP 85 (86)
T cd06475 70 VTSSLSPDGILTVEAP 85 (86)
T ss_pred cEEEECCCCeEEEEec
Confidence 999997 999999998
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.83 E-value=4.3e-20 Score=137.25 Aligned_cols=83 Identities=27% Similarity=0.523 Sum_probs=71.4
Q ss_pred EeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEE
Q 027026 125 ETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAE 204 (229)
Q Consensus 125 E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~ 204 (229)
+.++.|.|.++|||++++||+|.+++|.|+|+|++....+. +.+.+. +.+|+|.|+|.||++||.+.|+|.
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~------~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~ 74 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNED------EKGSFS---YEYQEFVREAQLPEHVDPEAVTCS 74 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeeccc------CCCcEE---EEeeEEEEEEECCCCcChHHeEEE
Confidence 46789999999999999999999999999999998654322 122332 468999999999999999999999
Q ss_pred E-ECCEEEEEEec
Q 027026 205 V-KDGVLYITIPK 216 (229)
Q Consensus 205 ~-~nGvL~ItiPK 216 (229)
| +||||+|++|+
T Consensus 75 ~~~dGvL~I~~P~ 87 (87)
T cd06481 75 LSPSGHLHIRAPR 87 (87)
T ss_pred eCCCceEEEEcCC
Confidence 9 99999999995
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.83 E-value=5.2e-20 Score=135.69 Aligned_cols=80 Identities=24% Similarity=0.419 Sum_probs=68.5
Q ss_pred EEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEE
Q 027026 124 RETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQA 203 (229)
Q Consensus 124 ~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA 203 (229)
..++++|.|.++|||++++||+|.+++|.|+|+|++.... +..++ ..+.|+|+|.||++||.++|+|
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~--------~~~~~-----~~~eF~R~~~LP~~vd~~~v~A 69 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRM--------DRHGF-----VSREFTRTYILPMDVDPLLVRA 69 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccee--------cCCCE-----EEEEEEEEEECCCCCChhhEEE
Confidence 4568899999999999999999999999999999974321 11222 3467999999999999999999
Q ss_pred EEE-CCEEEEEEec
Q 027026 204 EVK-DGVLYITIPK 216 (229)
Q Consensus 204 ~~~-nGvL~ItiPK 216 (229)
.|. ||+|+|++||
T Consensus 70 ~~~~dGvL~I~~Pr 83 (83)
T cd06476 70 SLSHDGILCIQAPR 83 (83)
T ss_pred EecCCCEEEEEecC
Confidence 996 9999999997
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.81 E-value=2.4e-19 Score=130.82 Aligned_cols=88 Identities=39% Similarity=0.717 Sum_probs=79.2
Q ss_pred EEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCce
Q 027026 122 AIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKI 201 (229)
Q Consensus 122 dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I 201 (229)
++.|++++|.+.++|||+++++|+|++.++.|+|+|++...... .......++.++.|.|+|.||.+++.+.+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~-------~~~~~~~~~~~~~f~r~~~LP~~vd~~~i 73 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEE-------EENYLRRERSYGSFSRSFRLPEDVDPDKI 73 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccccc-------CCcEEEEEEeCcEEEEEEECCCCcCHHHc
Confidence 47889999999999999999999999999999999999754433 12566778899999999999999999999
Q ss_pred EEEEECCEEEEEEec
Q 027026 202 QAEVKDGVLYITIPK 216 (229)
Q Consensus 202 kA~~~nGvL~ItiPK 216 (229)
+|.|+||+|+|++||
T Consensus 74 ~a~~~~G~L~I~~pk 88 (88)
T cd06464 74 KASLENGVLTITLPK 88 (88)
T ss_pred EEEEeCCEEEEEEcC
Confidence 999999999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.81 E-value=2e-19 Score=133.70 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=69.8
Q ss_pred eCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEE
Q 027026 126 TENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEV 205 (229)
Q Consensus 126 ~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~ 205 (229)
+++.|+|.++|||++++||+|.+++|.|+|+|+++...+. .+ ..++++|+|.|+|.||.+||.++|+|+|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~-------~~---~~er~~g~F~R~f~LP~~Vd~d~i~A~~ 75 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDC-------LG---SKKYSYMNICKEFSLPPGVDEKDVTYSY 75 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccccc-------CC---ccEEEEEEEEEEEECCCCcChHHcEEEE
Confidence 5789999999999999999999999999999998654321 11 2377999999999999999999999999
Q ss_pred ECC-EEEEEEe
Q 027026 206 KDG-VLYITIP 215 (229)
Q Consensus 206 ~nG-vL~ItiP 215 (229)
+|| +|+|.-|
T Consensus 76 ~~~~~l~i~~~ 86 (87)
T cd06482 76 GLGSVVKIETP 86 (87)
T ss_pred cCCCEEEEeeC
Confidence 977 9999876
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.80 E-value=4.5e-19 Score=130.69 Aligned_cols=79 Identities=29% Similarity=0.437 Sum_probs=67.7
Q ss_pred EEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEE
Q 027026 124 RETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQA 203 (229)
Q Consensus 124 ~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA 203 (229)
.|+++.|+|.++|||++++||+|.++++.|+|+|++....+ +.++ ..++|.|+|.||.+|+.++|+|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~--------~~~~-----~~r~F~R~~~LP~~Vd~~~v~A 69 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMD--------EHGF-----ISRSFTRQYQLPDGVEHKDLSA 69 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccC--------CCCE-----EEEEEEEEEECCCCcchheEEE
Confidence 36789999999999999999999999999999999854221 1222 2359999999999999999999
Q ss_pred EE-ECCEEEEEEe
Q 027026 204 EV-KDGVLYITIP 215 (229)
Q Consensus 204 ~~-~nGvL~ItiP 215 (229)
.| +||||+|+.+
T Consensus 70 ~~~~dGvL~I~~~ 82 (83)
T cd06477 70 MLCHDGILVVETK 82 (83)
T ss_pred EEcCCCEEEEEec
Confidence 98 8999999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=4.8e-19 Score=130.08 Aligned_cols=77 Identities=26% Similarity=0.552 Sum_probs=67.9
Q ss_pred CCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEE
Q 027026 127 ENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVK 206 (229)
Q Consensus 127 ~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~ 206 (229)
++.|.|.++|||++++||+|.++++.|+|+|++....+ ..++.+++|.|+|.||.+||.++|+|.|.
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~-------------~~~~~~~~f~r~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERED-------------EHGYVSREFTRRYQLPEGVDPDSVTSSLS 72 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeecc-------------CCCEEEEEEEEEEECCCCCChHHeEEEeC
Confidence 46999999999999999999999999999999864321 11235699999999999999999999999
Q ss_pred C-CEEEEEEec
Q 027026 207 D-GVLYITIPK 216 (229)
Q Consensus 207 n-GvL~ItiPK 216 (229)
| |+|+|++||
T Consensus 73 ~~GvL~I~~Pk 83 (83)
T cd06526 73 SDGVLTIEAPK 83 (83)
T ss_pred CCcEEEEEecC
Confidence 8 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.1e-19 Score=152.21 Aligned_cols=112 Identities=29% Similarity=0.633 Sum_probs=98.3
Q ss_pred cCCCCcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECC-EEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEEC
Q 027026 114 YRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEES-MLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIAL 192 (229)
Q Consensus 114 ~~~~~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~-~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~L 192 (229)
...++++|+|.|..+.|.+.++|||+.+++|+|.++++ +|+|+|++..+.+..+ ....++|.|+.+|.|.++|.|
T Consensus 80 ~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~----~~~~~~~~E~~~g~F~r~~~l 155 (196)
T KOG0710|consen 80 KSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESG----SGKKWKRVERKLGKFKRRFEL 155 (196)
T ss_pred cccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccccccc----CCccceeehhcccceEeeecC
Confidence 34568899999999999999999999999999999987 7999999987665422 346788999999999999999
Q ss_pred CCCcccCceEEEEECCEEEEEEeccCC---CCCceEeecC
Q 027026 193 PDNVEFEKIQAEVKDGVLYITIPKASS---TAKIVDINVQ 229 (229)
Q Consensus 193 P~~vd~~~IkA~~~nGvL~ItiPK~~~---~~k~i~I~iq 229 (229)
|++++.+.|+|.|+||||.|++||... ..+++.|.|+
T Consensus 156 Penv~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 156 PENVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred CccccHHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 999999999999999999999999987 4667777663
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.66 E-value=4.3e-16 Score=116.65 Aligned_cols=80 Identities=16% Similarity=0.403 Sum_probs=69.1
Q ss_pred EEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEE
Q 027026 124 RETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQA 203 (229)
Q Consensus 124 ~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA 203 (229)
..+++.|.|.+|+.||++|||+|.+.++.|+|+|++..... ++. ...++|.|+|.||++||.+.|+|
T Consensus 11 ~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~--------e~g-----~~~r~F~R~~~LP~~Vd~~~v~s 77 (91)
T cd06480 11 PNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQK--------EGG-----IVSKNFTKKIQLPPEVDPVTVFA 77 (91)
T ss_pred CCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccC--------CCC-----EEEEEEEEEEECCCCCCchhEEE
Confidence 34678999999999999999999999999999999864321 122 23489999999999999999999
Q ss_pred EEE-CCEEEEEEec
Q 027026 204 EVK-DGVLYITIPK 216 (229)
Q Consensus 204 ~~~-nGvL~ItiPK 216 (229)
.|. ||+|+|++|.
T Consensus 78 ~l~~dGvL~IeaP~ 91 (91)
T cd06480 78 SLSPEGLLIIEAPQ 91 (91)
T ss_pred EeCCCCeEEEEcCC
Confidence 998 9999999983
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.50 E-value=2.8e-13 Score=95.11 Aligned_cols=80 Identities=34% Similarity=0.697 Sum_probs=70.9
Q ss_pred EEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceE
Q 027026 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 202 (229)
Q Consensus 123 I~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~Ik 202 (229)
+.++++.|.|++++||+.+++|+|.+.++.|.|+|....... .+...+.|.+.+.||..++.+.++
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~--------------~~~~~~~~~~~~~L~~~i~~~~~~ 66 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE--------------RERSYGEFERSFELPEDVDPEKSK 66 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc--------------ceEeeeeEEEEEECCCCcCHHHCE
Confidence 357889999999999999999999999999999998753211 344678999999999999999999
Q ss_pred EEEECCEEEEEEec
Q 027026 203 AEVKDGVLYITIPK 216 (229)
Q Consensus 203 A~~~nGvL~ItiPK 216 (229)
|.+.+|+|+|++||
T Consensus 67 ~~~~~~~l~i~l~K 80 (80)
T cd00298 67 ASLENGVLEITLPK 80 (80)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999997
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.6e-13 Score=114.01 Aligned_cols=96 Identities=20% Similarity=0.428 Sum_probs=80.4
Q ss_pred cCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCccc
Q 027026 119 TPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEF 198 (229)
Q Consensus 119 p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~ 198 (229)
...++..+++.|.|.+|+..|.+|+|+|.+.|+.|.|.|++....+. .++ ..++|.|++.||++||+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~--------~G~-----v~R~F~R~y~LP~~vdp 129 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDE--------HGY-----VSRSFVRKYLLPEDVDP 129 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCC--------CCe-----EEEEEEEEecCCCCCCh
Confidence 34788899999999999999999999999999999999998643211 122 44799999999999999
Q ss_pred CceEEEEE-CCEEEEEEeccCCC---CCceEee
Q 027026 199 EKIQAEVK-DGVLYITIPKASST---AKIVDIN 227 (229)
Q Consensus 199 ~~IkA~~~-nGvL~ItiPK~~~~---~k~i~I~ 227 (229)
+.|++.+. ||+|+|+.||.... .+.|.|+
T Consensus 130 ~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 130 TSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred hheEEeeCCCceEEEEccCCCCcCccceEEeEe
Confidence 99999996 99999999998754 4455554
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.26 E-value=4.1e-11 Score=86.11 Aligned_cols=70 Identities=24% Similarity=0.390 Sum_probs=64.3
Q ss_pred EEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEE
Q 027026 124 RETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQA 203 (229)
Q Consensus 124 ~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA 203 (229)
.++++.+.|.+++||+.+++++|.++++.|.|++ ..|.+.+.||..|+++.++|
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~--------------------------~~~~~~~~l~~~I~~e~~~~ 55 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF--------------------------PPYLFELDLAAPIDDEKSSA 55 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcC--------------------------CCEEEEEeCcccccccccEE
Confidence 5788999999999999999999999999999976 13778899999999999999
Q ss_pred EEECCEEEEEEeccCC
Q 027026 204 EVKDGVLYITIPKASS 219 (229)
Q Consensus 204 ~~~nGvL~ItiPK~~~ 219 (229)
.+.+|.|.|+++|.+.
T Consensus 56 ~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 56 KIGNGVLVFTLVKKEP 71 (78)
T ss_pred EEeCCEEEEEEEeCCC
Confidence 9999999999999865
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.02 E-value=2.1e-09 Score=89.15 Aligned_cols=79 Identities=24% Similarity=0.416 Sum_probs=63.0
Q ss_pred CcCeEEEEeCC-EEEEEEEcCCCCCCc-eEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCC
Q 027026 118 RTPWAIRETEN-DYKIRLDVPGMSRND-VKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDN 195 (229)
Q Consensus 118 ~p~~dI~E~~d-~y~l~~dLPG~~ked-V~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~ 195 (229)
.+.+++.+.++ +++|.++|||+++++ |+|.++.+.+.|..... +.|.+++.||..
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-----------------------~~~~krv~L~~~ 147 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-----------------------EKYLKRVALPWP 147 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-----------------------CceEeeEecCCC
Confidence 45689998777 799999999999998 99999865544444221 235679999966
Q ss_pred cccCceEEEEECCEEEEEEeccCCC
Q 027026 196 VEFEKIQAEVKDGVLYITIPKASST 220 (229)
Q Consensus 196 vd~~~IkA~~~nGvL~ItiPK~~~~ 220 (229)
+.+.++|.|+||||+|.|-+.+..
T Consensus 148 -~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 148 -DPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred -ccceeeEEEeCceEEEEEeecCCC
Confidence 688899999999999999887653
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.97 E-value=5.8e-09 Score=74.64 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=66.8
Q ss_pred EEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEE
Q 027026 124 RETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQA 203 (229)
Q Consensus 124 ~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA 203 (229)
.++++.+.|.+++||..+++++|.++++.|.|++... ..+.|...+.|+..|+++..++
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~---------------------~~~~~~~~~~L~~~I~~~~s~~ 60 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG---------------------GGKEYLLEGELFGPIDPEESKW 60 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC---------------------CCCceEEeeEccCccchhhcEE
Confidence 4678999999999999999999999999999998542 1146778899999999999999
Q ss_pred EEECCEEEEEEeccCC
Q 027026 204 EVKDGVLYITIPKASS 219 (229)
Q Consensus 204 ~~~nGvL~ItiPK~~~ 219 (229)
.+++|.|.|+++|.+.
T Consensus 61 ~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 61 TVEDRKIEITLKKKEP 76 (84)
T ss_pred EEeCCEEEEEEEECCC
Confidence 9999999999999875
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.75 E-value=5.6e-08 Score=70.46 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=67.7
Q ss_pred EEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCce
Q 027026 122 AIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKI 201 (229)
Q Consensus 122 dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I 201 (229)
|++++++.+.|.+.+||+.+++++|.++++.|.|++... ....|...+.|+..|+++..
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~---------------------~~~~~~~~~~L~~~I~~~~s 59 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP---------------------GGSEYQLELDLFGPIDPEQS 59 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC---------------------CCCeEEEecccccccCchhc
Confidence 467889999999999999999999999999999987541 11357778999999999999
Q ss_pred EEEEECCEEEEEEeccCC
Q 027026 202 QAEVKDGVLYITIPKASS 219 (229)
Q Consensus 202 kA~~~nGvL~ItiPK~~~ 219 (229)
++.+.+|.|.|++.|...
T Consensus 60 ~~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 60 KVSVLPTKVEITLKKAEP 77 (84)
T ss_pred EEEEeCeEEEEEEEcCCC
Confidence 999999999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.46 E-value=7.7e-06 Score=57.84 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=64.5
Q ss_pred cCeEEEEeCCEEEEEEEcCCC--CCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCc
Q 027026 119 TPWAIRETENDYKIRLDVPGM--SRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 196 (229)
Q Consensus 119 p~~dI~E~~d~y~l~~dLPG~--~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v 196 (229)
|.+++.++++.+.|.+.+++. ++++|+|.++++.|.|+...... ..|.-.+.|...|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~---------------------~~~~~~~~L~~~I 59 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG---------------------KEYLLEGELFGEI 59 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS---------------------CEEEEEEEBSS-B
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC---------------------ceEEEEEEEeeeE
Confidence 468999999999999999665 59999999999999999754210 2566678899999
Q ss_pred ccCceEEEEECCEEEEEEec
Q 027026 197 EFEKIQAEVKDGVLYITIPK 216 (229)
Q Consensus 197 d~~~IkA~~~nGvL~ItiPK 216 (229)
+++..++.+.++.|.|+|.|
T Consensus 60 ~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 60 DPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp ECCCEEEEEETTEEEEEEEB
T ss_pred cchhcEEEEECCEEEEEEEC
Confidence 99999999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.16 E-value=3.2e-05 Score=59.10 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=67.3
Q ss_pred cCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCccc
Q 027026 119 TPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEF 198 (229)
Q Consensus 119 p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~ 198 (229)
|+++++++.+.+.|.+.+||. ++++|.++.+.|.|++.... ....|.-.+.|...|++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~--------------------~~~~y~~~~~L~~~I~p 58 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG--------------------GGKKYEFDLEFYKEIDP 58 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC--------------------CCeeEEEEeEhhhhccc
Confidence 578999999999999999998 88999999999999984311 01246667899999999
Q ss_pred CceEEEEECCEEEEEEeccC
Q 027026 199 EKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 199 ~~IkA~~~nGvL~ItiPK~~ 218 (229)
+..+..+.++.|.|+|.|..
T Consensus 59 e~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 59 EESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred cccEEEecCCeEEEEEEECC
Confidence 99999999999999999987
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.96 E-value=7.3e-05 Score=54.46 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=65.0
Q ss_pred EEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCce
Q 027026 122 AIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKI 201 (229)
Q Consensus 122 dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I 201 (229)
|++++++.+.|.+.++|+.+++++|.++++.|.+++.... ...|.-.+.|...|+++..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~---------------------~~~y~~~~~L~~~I~p~~s 59 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS---------------------GNDYSLKLHLLHPIVPEQS 59 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC---------------------CCcEEEeeecCceecchhc
Confidence 4678899999999999999999999999999999985410 0136667899999999988
Q ss_pred EEEEECCEEEEEEeccCC
Q 027026 202 QAEVKDGVLYITIPKASS 219 (229)
Q Consensus 202 kA~~~nGvL~ItiPK~~~ 219 (229)
+..+..+-+.|++.|.+.
T Consensus 60 ~~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 60 SYKILSTKIEIKLKKTEA 77 (84)
T ss_pred EEEEeCcEEEEEEEcCCC
Confidence 888889999999999754
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.95 E-value=4e-05 Score=68.94 Aligned_cols=65 Identities=25% Similarity=0.490 Sum_probs=58.3
Q ss_pred CCEEEEEEEcCCC-CCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEE
Q 027026 127 ENDYKIRLDVPGM-SRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEV 205 (229)
Q Consensus 127 ~d~y~l~~dLPG~-~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~ 205 (229)
.+.++|+++|||+ +..+|+|.|.+..|.|.... ..|.-.+.||..|+.+..+|.|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~------------------------~~y~L~l~LP~~V~~~~~~Akf 315 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPK------------------------PKYRLDLPLPYPVDEDNGKAKF 315 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCC------------------------CceEEEccCCCcccCCCceEEE
Confidence 5789999999999 88999999999999999733 2577789999999999999999
Q ss_pred E--CCEEEEEEe
Q 027026 206 K--DGVLYITIP 215 (229)
Q Consensus 206 ~--nGvL~ItiP 215 (229)
. .++|+||+|
T Consensus 316 ~~~~~~L~vtlp 327 (328)
T PF08190_consen 316 DKKTKTLTVTLP 327 (328)
T ss_pred ccCCCEEEEEEE
Confidence 6 689999998
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.93 E-value=0.00011 Score=53.32 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=62.1
Q ss_pred eEEEEeCCEEEEEEEcC-CCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccC
Q 027026 121 WAIRETENDYKIRLDVP-GMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFE 199 (229)
Q Consensus 121 ~dI~E~~d~y~l~~dLP-G~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
+.+.++++.+.|.+.+| ++.++||+|.+.++.|.|+... +.+.-...|...|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~------------------------~~~~l~~~L~~~I~~~ 56 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG------------------------GEPLLDGELYAKVKVD 56 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC------------------------CCceEcCcccCceeEc
Confidence 35788999999999997 7899999999999999998731 0111224688999999
Q ss_pred ceEEEEEC-CEEEEEEeccCC
Q 027026 200 KIQAEVKD-GVLYITIPKASS 219 (229)
Q Consensus 200 ~IkA~~~n-GvL~ItiPK~~~ 219 (229)
.....+.+ ..|.|+++|.++
T Consensus 57 ~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 57 ESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CCEEEEeCCCEEEEEEEECCC
Confidence 98889999 999999999875
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.79 E-value=0.00029 Score=51.58 Aligned_cols=75 Identities=15% Similarity=0.314 Sum_probs=60.5
Q ss_pred eEEEEeCCEEEEEEEcC-CCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccC
Q 027026 121 WAIRETENDYKIRLDVP-GMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFE 199 (229)
Q Consensus 121 ~dI~E~~d~y~l~~dLP-G~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
+++.++.+.+.|.+.+| |+.++||+|.++.+.|.|.... +. .+ -.-.|...|+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~--------------~~---------~~-~~g~L~~~I~~d 56 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKD--------------QA---------PL-LEGKLYSSIDHE 56 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCC--------------CC---------eE-EeCcccCccccc
Confidence 46788999999999996 9999999999999999997521 00 11 123788999999
Q ss_pred ceEEEEECC-EEEEEEeccCC
Q 027026 200 KIQAEVKDG-VLYITIPKASS 219 (229)
Q Consensus 200 ~IkA~~~nG-vL~ItiPK~~~ 219 (229)
...-.+.+| .|.|++.|.++
T Consensus 57 ~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 57 SSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CcEEEEeCCCEEEEEEEECCC
Confidence 988888777 79999999875
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.72 E-value=0.00061 Score=50.23 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=65.5
Q ss_pred CeEEEEeCCEEEEEEEcCCCCC---CceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEE-CCCC
Q 027026 120 PWAIRETENDYKIRLDVPGMSR---NDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIA-LPDN 195 (229)
Q Consensus 120 ~~dI~E~~d~y~l~~dLPG~~k---edV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~-LP~~ 195 (229)
.+++.++++.+.|.+.+|+..+ ++++|.++.+.|.|++.... + ..|.-.+. |-..
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~------------~---------~~~~~~~~~L~~~ 61 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN------------G---------KNYRFTINRLLKK 61 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC------------C---------cEEEEEehHhhCc
Confidence 4788999999999999999876 99999999999999883210 0 13444554 8899
Q ss_pred cccCceEEEEECCEEEEEEeccCC
Q 027026 196 VEFEKIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 196 vd~~~IkA~~~nGvL~ItiPK~~~ 219 (229)
|+++..+..+..+-+.|++.|.++
T Consensus 62 I~~e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 62 IDPEKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred cCccccEEEEeCCEEEEEEEeCCC
Confidence 999999999999999999999875
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.60 E-value=0.0009 Score=49.26 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=67.5
Q ss_pred CeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccC
Q 027026 120 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFE 199 (229)
Q Consensus 120 ~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
.+|++++++.+.|.+.+.|+.++++.|.++++.|.|...... ...|.-.+.|-..|+++
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~---------------------~~~y~~~l~L~~~I~~~ 60 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG---------------------NKEFQLDIELWGVIDVE 60 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC---------------------CceEEEEeeccceEChh
Confidence 378999999999999999999999999999999988764421 02477778999999999
Q ss_pred ceEEEEECCEEEEEEeccCC
Q 027026 200 KIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 200 ~IkA~~~nGvL~ItiPK~~~ 219 (229)
..+.....+-+.|++.|.+.
T Consensus 61 ~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 61 KSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred HcEEEecCcEEEEEEEeCCC
Confidence 98888889999999999874
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.32 E-value=0.0033 Score=47.14 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=62.9
Q ss_pred CcCeEEEEeCCEEEEEEEcC-CCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCc
Q 027026 118 RTPWAIRETENDYKIRLDVP-GMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 196 (229)
Q Consensus 118 ~p~~dI~E~~d~y~l~~dLP-G~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v 196 (229)
.+.+++.++.+.+.|.|.+| |..++||+|.+..+.|.|..... .. -.| .|...|
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~---------------~~----l~G------~L~~~I 59 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ---------------EV----LKG------KLFDSV 59 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE---------------EE----EcC------cccCcc
Confidence 45689999999999999998 99999999999999999985110 00 112 688899
Q ss_pred ccCceEEEEECCE-EEEEEeccCC
Q 027026 197 EFEKIQAEVKDGV-LYITIPKASS 219 (229)
Q Consensus 197 d~~~IkA~~~nGv-L~ItiPK~~~ 219 (229)
+++...-.+++|- |.|+|.|...
T Consensus 60 ~~destWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 60 VADECTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred CcccCEEEEECCcEEEEEEEeCCC
Confidence 9999899998775 8999999763
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.11 E-value=0.0097 Score=45.68 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=62.4
Q ss_pred cCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCccc
Q 027026 119 TPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEF 198 (229)
Q Consensus 119 p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~ 198 (229)
|++++.++.+.+.|.+++|+ .+|++|.++++.|.++|... +. -.|.-.+.|=..|++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~---~g------------------~~y~~~l~l~~~I~p 58 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG---DN------------------VKIYNEIELYDRVDP 58 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC---CC------------------cEEEEEEEeecccCc
Confidence 56899999999999999999 58999999999999998331 00 124456788889999
Q ss_pred CceEEEEECCEEEEEEeccCC
Q 027026 199 EKIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 199 ~~IkA~~~nGvL~ItiPK~~~ 219 (229)
+..+.....--+.|.|.|.+.
T Consensus 59 e~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 59 NDSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred ccCeEEeCCceEEEEEEeCCC
Confidence 977777767788889999763
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.40 E-value=0.013 Score=49.00 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=63.9
Q ss_pred CcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcc
Q 027026 118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 197 (229)
Q Consensus 118 ~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd 197 (229)
...+|++++....+|.+..+|+.++||.|.+.++.|.|..+.... ..|.-...|-..|.
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g---------------------~~~~l~~~L~~~I~ 61 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSG---------------------SEYNLQLKLYHEII 61 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCc---------------------hhhhhhHHhccccc
Confidence 456899999999999999999999999999999999998766311 13444455777888
Q ss_pred cCceEEEEECCEEEEEEeccC
Q 027026 198 FEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 198 ~~~IkA~~~nGvL~ItiPK~~ 218 (229)
++..+-++----++|+|+|..
T Consensus 62 pe~~s~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 62 PEKSSFKVFSTKVEITLAKAE 82 (196)
T ss_pred ccceeeEeeeeeEEEEecccc
Confidence 887776666778899999854
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.31 E-value=0.024 Score=52.12 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=67.8
Q ss_pred CcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcc
Q 027026 118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 197 (229)
Q Consensus 118 ~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd 197 (229)
.+..|++++++.+.|.|.+.|+.++++.|.+.++.|.|+..... + ..|...+.|-..|+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~------------~---------~~y~~~~~L~~~I~ 214 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPG------------E---------DAYHLQPRLFGKII 214 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCC------------C---------cceeeccccccccc
Confidence 35589999999999999999999999999999999999874421 0 13555678999999
Q ss_pred cCceEEEEECCEEEEEEeccCC
Q 027026 198 FEKIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 198 ~~~IkA~~~nGvL~ItiPK~~~ 219 (229)
++..+..+.-.-++|++.|...
T Consensus 215 p~~s~~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 215 PDKCKYEVLSTKIEIRLAKAEP 236 (356)
T ss_pred ccccEEEEecceEEEEEecCCC
Confidence 9999988888899999988753
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.16 E-value=0.069 Score=39.37 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=56.5
Q ss_pred EEEeCCEEEEEEEcC-C--CCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccC
Q 027026 123 IRETENDYKIRLDVP-G--MSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFE 199 (229)
Q Consensus 123 I~E~~d~y~l~~dLP-G--~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
+.++.++..|.+.+| | .+..||+|.+..+.|.|..... .. --.-.|...|+.+
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~--------------~~----------~i~G~L~~~V~~d 58 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQ--------------PP----------IIDGELYNEVKVE 58 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCC--------------ce----------EEeCcccCccccc
Confidence 456788899999996 3 8899999999999999865210 00 1122678889999
Q ss_pred ceEEEEECC-EEEEEEeccCC
Q 027026 200 KIQAEVKDG-VLYITIPKASS 219 (229)
Q Consensus 200 ~IkA~~~nG-vL~ItiPK~~~ 219 (229)
...-.+++| .|.|++-|.+.
T Consensus 59 es~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 59 ESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred ccEEEEeCCCEEEEEEEECCC
Confidence 888889986 89999999864
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.04 E-value=0.16 Score=38.71 Aligned_cols=81 Identities=17% Similarity=0.309 Sum_probs=62.0
Q ss_pred CcCeEEEEeCCEEEEEEEcC-CC-CCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCC
Q 027026 118 RTPWAIRETENDYKIRLDVP-GM-SRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDN 195 (229)
Q Consensus 118 ~p~~dI~E~~d~y~l~~dLP-G~-~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~ 195 (229)
...|.+.++.+++.|+|.+| |. +.+||+|.+..+.|.|.-..... +... -.| .|+..
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~-----------~~~~----i~G------~L~~~ 62 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGG-----------EKVL----MEG------EFTHK 62 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCC-----------CceE----EeC------cccCc
Confidence 45789999999999999999 64 57999999999999988742100 0000 012 58889
Q ss_pred cccCceEEEEECC-EEEEEEeccCC
Q 027026 196 VEFEKIQAEVKDG-VLYITIPKASS 219 (229)
Q Consensus 196 vd~~~IkA~~~nG-vL~ItiPK~~~ 219 (229)
|+.+...-.+++| .|.|++-|...
T Consensus 63 V~~des~Wtled~~~l~I~L~K~~~ 87 (102)
T cd06495 63 INTENSLWSLEPGKCVLLSLSKCSE 87 (102)
T ss_pred ccCccceEEEeCCCEEEEEEEECCC
Confidence 9999989999986 58999999754
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.71 E-value=0.18 Score=37.09 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=56.8
Q ss_pred eEEEEeCCEEEEEEEcCC--CCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCccc
Q 027026 121 WAIRETENDYKIRLDVPG--MSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEF 198 (229)
Q Consensus 121 ~dI~E~~d~y~l~~dLPG--~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~ 198 (229)
+|++++++...|.+...+ ..++++.+....+.|.|+.... . ..|...+.|=..|+.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~----~------------------~~~~~~~~L~~~I~~ 58 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG----D------------------KSYLLHLDLSNEVQW 58 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC----C------------------ceEEEeeeccccCCC
Confidence 478999999999999885 5556666666777888876431 0 236667788888987
Q ss_pred CceEEEEE--CCEEEEEEeccCC
Q 027026 199 EKIQAEVK--DGVLYITIPKASS 219 (229)
Q Consensus 199 ~~IkA~~~--nGvL~ItiPK~~~ 219 (229)
+. +..+. -|-++|++.|.++
T Consensus 59 ~~-~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 59 PC-EVRISTETGKIELVLKKKEP 80 (87)
T ss_pred Cc-EEEEcccCceEEEEEEcCCC
Confidence 75 55555 7899999999764
No 42
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=86.92 E-value=6.3 Score=31.28 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=53.0
Q ss_pred CcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcc
Q 027026 118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 197 (229)
Q Consensus 118 ~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd 197 (229)
...+.|...++ ..+++.. ..+.+++..+++.|.|+.+.....- ...+.+... ...-.-.+.||.++.
T Consensus 65 ~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~--------~~~~~~~~~-~~~~~i~I~lP~~~~ 131 (166)
T PF13349_consen 65 NGDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESFF--------FKGFNFNNS-DNKSKITIYLPKDYK 131 (166)
T ss_pred ceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEecccccc--------cceEEEccc-CCCcEEEEEECCCCc
Confidence 34577776554 4444554 2226889999999999986211000 011111111 245566799999998
Q ss_pred cCceEEEEECCEEEEEE
Q 027026 198 FEKIQAEVKDGVLYITI 214 (229)
Q Consensus 198 ~~~IkA~~~nGvL~Iti 214 (229)
.++|+....+|-+.|.=
T Consensus 132 l~~i~i~~~~G~i~i~~ 148 (166)
T PF13349_consen 132 LDKIDIKTSSGDITIED 148 (166)
T ss_pred eeEEEEEeccccEEEEc
Confidence 89999999999888753
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=86.91 E-value=2.3 Score=35.52 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=60.4
Q ss_pred CcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcc
Q 027026 118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVE 197 (229)
Q Consensus 118 ~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd 197 (229)
.|.+.+.+..+.++|.+.++ +..+++|.+++..|+++++.... .-.|...|.|=..||
T Consensus 7 ~p~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d--------------------~~~~~~~ief~~eId 64 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGAD--------------------NHKYENEIEFFDEID 64 (180)
T ss_pred CCcchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCC--------------------ceeeEEeeehhhhcC
Confidence 56688889999999999997 45678888899999999966311 124556789999999
Q ss_pred cCceEEEEECCEEEEEEeccCC
Q 027026 198 FEKIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 198 ~~~IkA~~~nGvL~ItiPK~~~ 219 (229)
+++.+-+.. +.+...+++++.
T Consensus 65 pe~sk~k~~-~r~if~i~~K~e 85 (180)
T KOG3158|consen 65 PEKSKHKRT-SRSIFCILRKKE 85 (180)
T ss_pred Hhhcccccc-ceEEEEEEEccc
Confidence 998876666 777777776553
No 44
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=77.80 E-value=1.2 Score=40.11 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCc
Q 027026 117 GRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 196 (229)
Q Consensus 117 ~~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v 196 (229)
.+..|+..++.....|-+.-|-+..++|.+.+++|+|.|+-+... ...-+.-.+.|-..|
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~--------------------~~~~~~~~~~Ly~ev 234 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRR--------------------LRLWNDITISLYKEV 234 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccc--------------------cchHHHhhhhhhhhc
Confidence 355688889999999999999999999999999999999976532 111233456777888
Q ss_pred ccCceEEEEECCEEEEEEeccC
Q 027026 197 EFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 197 d~~~IkA~~~nGvL~ItiPK~~ 218 (229)
+++...-+.---+++|+|-|..
T Consensus 235 ~P~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 235 YPDIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred Ccchhhhhhcchhheehhhhhh
Confidence 8887665555578888887764
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=76.21 E-value=6.2 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=29.7
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEeccC
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
..|.-...|| +++++.|+..+.||.|+|..-+..
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 3677789999 799999999999999999997754
No 46
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=75.24 E-value=23 Score=29.73 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=60.3
Q ss_pred CCCcCeEEEEeCCEEEEEEEcC-CC-CCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECC
Q 027026 116 RGRTPWAIRETENDYKIRLDVP-GM-SRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALP 193 (229)
Q Consensus 116 ~~~p~~dI~E~~d~y~l~~dLP-G~-~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP 193 (229)
...+.+.+..+=.++.|.+.+| |+ +..+|.+.+....|.|.-......- -| .|.
T Consensus 16 ~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~il------------------dG------~L~ 71 (179)
T KOG2265|consen 16 ADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPIL------------------DG------ELS 71 (179)
T ss_pred ccccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCcee------------------cC------ccc
Confidence 4567789999999999999997 88 8889999999998888753321110 02 366
Q ss_pred CCcccCceEEEEECCEEEEEEeccCC
Q 027026 194 DNVEFEKIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 194 ~~vd~~~IkA~~~nGvL~ItiPK~~~ 219 (229)
..|..+.....+++|.+.|++-++..
T Consensus 72 ~~vk~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 72 HSVKVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred cccccccceEEecCCEEEEEEeeccc
Confidence 67888888999999988887766543
No 47
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=72.67 E-value=8.7 Score=28.00 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=30.2
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEeccCC
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~~ 219 (229)
..|.-.+.|| ++..+.|+-.+++|.|+|+..+...
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 5788899999 6999999999999999999776543
No 48
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=70.86 E-value=7.8 Score=28.14 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=28.9
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEecc
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA 217 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~ 217 (229)
..|.-.+.|| ++.++.|+..++||.|+|.--+.
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4677889999 79999999999999999998653
No 49
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=70.25 E-value=20 Score=30.03 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=33.9
Q ss_pred CCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEEe
Q 027026 140 SRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIP 215 (229)
Q Consensus 140 ~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiP 215 (229)
=+++|+|.++++.++|+|.+ |...+.|.-+ .++..++||.|.|+..
T Consensus 12 IP~~V~v~i~~~~v~VkGp~------------------------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEGLVVTVKGPK------------------------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEECCEEEEECCC------------------------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 36889999999999999944 6666544422 4566778998888755
No 50
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=70.06 E-value=11 Score=27.52 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=29.2
Q ss_pred eEEEEEECCCCcccCceEEEEECCEEEEEEeccC
Q 027026 185 SYSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 185 ~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
.|.-.+.|| +++++.|+-.+++|.|+|+--+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577789999 799999999999999999997644
No 51
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=68.07 E-value=11 Score=27.14 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=29.0
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEecc
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA 217 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~ 217 (229)
..|.-.+.|| +++++.|+..+.+|.|+|..-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4678889999 89999999999999999998653
No 52
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=67.91 E-value=13 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=29.2
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEecc
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA 217 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~ 217 (229)
..|.-.+.|| +++++.|+..+.+|+|+|+--+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4688889999 79999999999999999998653
No 53
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=67.75 E-value=5.5 Score=27.42 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=16.2
Q ss_pred CceEEEEECCEEEEEEeccCCCCCceEeec
Q 027026 199 EKIQAEVKDGVLYITIPKASSTAKIVDINV 228 (229)
Q Consensus 199 ~~IkA~~~nGvL~ItiPK~~~~~k~i~I~i 228 (229)
..|+|.|+||||.--=|-.-.+...+.|.|
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~Eg~~V~i~I 32 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPEGEEVKITI 32 (60)
T ss_dssp --EEEEEETTEEEECS-----TTEEEEEEE
T ss_pred ceEEEEEECCEEEECCCCCCCCCCEEEEEE
Confidence 458999999999765433333444455544
No 54
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=67.64 E-value=27 Score=28.99 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=33.5
Q ss_pred CCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEEec
Q 027026 141 RNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPK 216 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK 216 (229)
+++|+|.++++.++|+|.+ |...+.|. |. .++...++|.|.|..+.
T Consensus 7 P~~V~v~i~~~~i~vkGp~------------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~~ 52 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPK------------------------GEVTRELW-YP-----GIEISVEDGKVVIETDF 52 (170)
T ss_pred CCCCEEEEeCCEEEEECCC------------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeCC
Confidence 5789999999999999944 66655443 32 45556788988888543
No 55
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=66.73 E-value=15 Score=26.58 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=29.5
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEeccC
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
..|.-.+.|| .++++.|+..+++|.|+|.--|..
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 3677789999 799999999999999999987644
No 56
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=66.73 E-value=11 Score=27.45 Aligned_cols=31 Identities=16% Similarity=0.384 Sum_probs=27.1
Q ss_pred CCEEEEEEEcCCCCCCceEEEEECCEEEEEE
Q 027026 127 ENDYKIRLDVPGMSRNDVKVRVEESMLVIKA 157 (229)
Q Consensus 127 ~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g 157 (229)
-+.|.-.+.||.+..+.++-++.+|.|+|+.
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 3467777899999999999999999999985
No 57
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.44 E-value=13 Score=25.94 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=28.8
Q ss_pred eCCEEEEEEEcC-CCCCCceEEEEECCEEEEEE
Q 027026 126 TENDYKIRLDVP-GMSRNDVKVRVEESMLVIKA 157 (229)
Q Consensus 126 ~~d~y~l~~dLP-G~~kedV~V~v~~~~L~I~g 157 (229)
....|.-.+.|| +++.+.++..+.+|.|+|+.
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~ 86 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENGVLTITL 86 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEE
Confidence 467899999999 78999999999999999986
No 58
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=65.25 E-value=36 Score=30.41 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=67.3
Q ss_pred CeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccC
Q 027026 120 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFE 199 (229)
Q Consensus 120 ~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
..|+..++..++|.++.-|.-++.-.|...+-.|.|....... -..|..-+.|=.-|+++
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~g--------------------na~fd~d~kLwgvvnve 275 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFG--------------------NASFDLDYKLWGVVNVE 275 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCC--------------------Cceeeccceeeeeechh
Confidence 4688999999999999999999999999999999988765311 13577777787788999
Q ss_pred ceEEEEECCEEEEEEeccCCC
Q 027026 200 KIQAEVKDGVLYITIPKASST 220 (229)
Q Consensus 200 ~IkA~~~nGvL~ItiPK~~~~ 220 (229)
...+.+-.--.+|+++|.++.
T Consensus 276 ~s~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 276 ESSVVMGETKVEISLKKAEPG 296 (320)
T ss_pred hceEEeecceEEEEEeccCCC
Confidence 999999899999999998763
No 59
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=65.04 E-value=14 Score=26.35 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=30.1
Q ss_pred eEEEEEECCCCcccCceEEEEECCEEEEEEeccCC
Q 027026 185 SYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 185 ~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~~ 219 (229)
.|.-.+.|| ++.++.|+..++++.|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 688899999 5999999999999999999877553
No 60
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=64.13 E-value=30 Score=28.69 Aligned_cols=44 Identities=25% Similarity=0.491 Sum_probs=33.0
Q ss_pred CCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEEe
Q 027026 141 RNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIP 215 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiP 215 (229)
+++|+|+++++.|+|+|.. |...+.| |. .++...+++.|.|...
T Consensus 11 P~~V~v~~~~~~v~v~Gp~------------------------G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPK------------------------GELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCC------------------------eEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 6899999999999999944 6666555 54 3455678888877755
No 61
>PRK10743 heat shock protein IbpA; Provisional
Probab=62.84 E-value=17 Score=29.03 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEEEEECCCCcccCceEEEEECCEEEEEEeccC
Q 027026 186 YSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 186 f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
|.-...|| +++.+.|+..+++|+|+|..-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 44456788 799999999999999999986543
No 62
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=61.79 E-value=15 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=28.0
Q ss_pred CCEEEEEEEcC-CCCCCceEEEEECCEEEEEE
Q 027026 127 ENDYKIRLDVP-GMSRNDVKVRVEESMLVIKA 157 (229)
Q Consensus 127 ~d~y~l~~dLP-G~~kedV~V~v~~~~L~I~g 157 (229)
...|.-.+.|| +++.+.|+-.+++|.|+|+.
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 45899999999 79999999999999999985
No 63
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=61.63 E-value=32 Score=28.57 Aligned_cols=44 Identities=23% Similarity=0.453 Sum_probs=32.8
Q ss_pred CCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEEe
Q 027026 141 RNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIP 215 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiP 215 (229)
|++|+|+++++.|+|+|.. |...+.| |.. ++..++|+.|.|...
T Consensus 12 P~~V~v~~~~~~v~vkGp~------------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPK------------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCEEEEECCC------------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 5899999999999999944 6666655 543 455568888777754
No 64
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=61.49 E-value=27 Score=29.50 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=34.1
Q ss_pred CCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEEe
Q 027026 140 SRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIP 215 (229)
Q Consensus 140 ~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiP 215 (229)
=|++|+|+++++.++|+|.+ |...+.|.=|. ..|....+||.|.|.-+
T Consensus 12 IP~~V~V~i~~~~v~VkGp~------------------------G~L~~~~~~~~----~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVKSRKVTVTGKY------------------------GELTRSFRHLP----VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEECCEEEEECCC------------------------ceEEEEecCCC----ceEEEEeCCCEEEEEeC
Confidence 37899999999999999944 55555443211 25666778898877755
No 65
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=59.49 E-value=18 Score=26.15 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=28.4
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEec
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPK 216 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK 216 (229)
..|.-.+.|| +++++.|+..+.+|.|+|.--+
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 4678889999 7999999999999999999854
No 66
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=58.82 E-value=26 Score=25.42 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=29.7
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEeccC
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
..|.-.+.|| +++++.|+-.+.++.|+|+--+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 4677889999 799999999999999999986643
No 67
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=57.51 E-value=20 Score=23.86 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=20.4
Q ss_pred CCCCCCceEEEEECCEEEEEEEEec
Q 027026 137 PGMSRNDVKVRVEESMLVIKAEKAQ 161 (229)
Q Consensus 137 PG~~kedV~V~v~~~~L~I~g~~~~ 161 (229)
++++..+|+|.+.++.++|+|.-..
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESS
T ss_pred cccCCCeEEEEEECCEEEEEeeCcH
Confidence 4677779999999999999998854
No 68
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=57.28 E-value=25 Score=25.62 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=29.2
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEeccC
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
..|.-.+.|| .+.++.|+..++++.|.|+--+..
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 3577789999 799999999999999999987643
No 69
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=56.21 E-value=33 Score=24.99 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=27.8
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEecc
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA 217 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~ 217 (229)
..|.-.+.|| +++.+.|+-.+++|.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 4677889999 78999999999999999998776
No 70
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=55.05 E-value=35 Score=23.50 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=28.1
Q ss_pred CEEEEEEEcCC-CCCCceEEEEECCEEEEEEEE
Q 027026 128 NDYKIRLDVPG-MSRNDVKVRVEESMLVIKAEK 159 (229)
Q Consensus 128 d~y~l~~dLPG-~~kedV~V~v~~~~L~I~g~~ 159 (229)
+.|.+.++||+ +++++.+..+.++.|.|+-.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K 68 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVK 68 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEe
Confidence 56889999995 799999999999999999766
No 71
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=54.38 E-value=27 Score=28.12 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=26.1
Q ss_pred EEEEEECCCCcccCceEEEEECCEEEEEEeccC
Q 027026 186 YSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 186 f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
|.-...|| +++.+.|+-.+++|.|+|+--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44557788 789999999999999999986543
No 72
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=53.50 E-value=43 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEEe
Q 027026 141 RNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIP 215 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiP 215 (229)
+++|+|+++++.|+|+|.+ |..++ .||.. . =.|....++|.|.|+-+
T Consensus 12 P~~V~V~i~~~~ItVkGpk------------------------G~Ls~--~~~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKR------------------------GTLTK--DLRHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCCEEEEECCC------------------------cEEEE--EcCCC-C-cEEEEEecCCEEEEEeC
Confidence 6899999999999999944 55544 44431 0 13555677888888744
No 73
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=53.49 E-value=47 Score=28.21 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=56.8
Q ss_pred eEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEE-ECCCCcccC
Q 027026 121 WAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRI-ALPDNVEFE 199 (229)
Q Consensus 121 ~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i-~LP~~vd~~ 199 (229)
+-+-+.++.+.+.+.|-|+..|+|+|.+..+.|-|...--+ + -+|.-.+ .|-..|+++
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlq------------G---------K~y~~~vnnLlk~I~vE 135 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQ------------G---------KNYRMIVNNLLKPISVE 135 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeecC------------C---------cceeeehhhhccccChh
Confidence 44556788999999999999999999999999888864321 0 1233223 244567888
Q ss_pred ceEEEEECCEEEEEEeccCC
Q 027026 200 KIQAEVKDGVLYITIPKASS 219 (229)
Q Consensus 200 ~IkA~~~nGvL~ItiPK~~~ 219 (229)
+.+-..+-....|.+.|.+.
T Consensus 136 ks~~kvKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 136 KSSKKVKTDTVLILCKKVEN 155 (224)
T ss_pred hcccccccceEEEeehhhhc
Confidence 88888888888888866553
No 74
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=53.30 E-value=28 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=26.8
Q ss_pred CEEEEEEEcC-CCCCCceEEEEE-CCEEEEEE
Q 027026 128 NDYKIRLDVP-GMSRNDVKVRVE-ESMLVIKA 157 (229)
Q Consensus 128 d~y~l~~dLP-G~~kedV~V~v~-~~~L~I~g 157 (229)
..|.=++.|| +++.++|+=.+. +|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5677889999 899999999998 89999986
No 75
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=52.03 E-value=53 Score=22.31 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=34.2
Q ss_pred CcCeEEE-EeCCEEEEEEEcCCCCCCceEEEEE-CCEEEEEEEEe
Q 027026 118 RTPWAIR-ETENDYKIRLDVPGMSRNDVKVRVE-ESMLVIKAEKA 160 (229)
Q Consensus 118 ~p~~dI~-E~~d~y~l~~dLPG~~kedV~V~v~-~~~L~I~g~~~ 160 (229)
..|+.+. -..+.|.|++..||+..-.-+|.+. +....|+.+..
T Consensus 24 ~tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 24 TTPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 5566776 4678999999999999998889987 56777777653
No 76
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=51.96 E-value=31 Score=22.74 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=27.5
Q ss_pred CCEEEEEEEcCC-CCCCceEEEEECCEEEEEEE
Q 027026 127 ENDYKIRLDVPG-MSRNDVKVRVEESMLVIKAE 158 (229)
Q Consensus 127 ~d~y~l~~dLPG-~~kedV~V~v~~~~L~I~g~ 158 (229)
...|...+.||+ +..+.++..+.++.|.|...
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 468999999995 68889999999999998753
No 77
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=51.54 E-value=67 Score=24.12 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=33.5
Q ss_pred CCCcCeEEEEeCCEEEEEEEcCCC-----CCCceEEEEECCEEEEEE
Q 027026 116 RGRTPWAIRETENDYKIRLDVPGM-----SRNDVKVRVEESMLVIKA 157 (229)
Q Consensus 116 ~~~p~~dI~E~~d~y~l~~dLPG~-----~kedV~V~v~~~~L~I~g 157 (229)
...|++.|+++++.|.|.+--+.- .++...|.-+++.|-|.-
T Consensus 23 ~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~~ 69 (95)
T PF12992_consen 23 NGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIET 69 (95)
T ss_pred CCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEec
Confidence 457899999999999999877654 667777777788887763
No 78
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=50.58 E-value=50 Score=27.45 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=31.7
Q ss_pred CCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEEe
Q 027026 141 RNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIP 215 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiP 215 (229)
+++|+|.++++.|+|+|.. |... ..||.. +....+|+.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~------------------------G~l~--~~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPK------------------------GTLS--RKIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCC------------------------EEEE--EECCCC-----eEEEEeCCEEEEEcC
Confidence 5789999999999999944 5544 455543 455678887777654
No 79
>PF14913 DPCD: DPCD protein family
Probab=50.16 E-value=1.2e+02 Score=25.71 Aligned_cols=77 Identities=18% Similarity=0.364 Sum_probs=55.2
Q ss_pred CcCeEEEEeCCEEEEEEEcCCCCCCceEEEEEC--CEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCC-
Q 027026 118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEE--SMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPD- 194 (229)
Q Consensus 118 ~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~--~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~- 194 (229)
.|-+-=.++...|+-++-==-+.++--.|.|++ +.++|+-.- -.|.++|.+|+
T Consensus 86 nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtN------------------------KKYyKk~~IPDl 141 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTN------------------------KKYYKKFSIPDL 141 (194)
T ss_pred CCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECcC------------------------ccceeEecCCcH
Confidence 333444678888888885444678888888876 568888533 24666788884
Q ss_pred -----CcccCceEEEEECCEEEEEEeccC
Q 027026 195 -----NVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 195 -----~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
..+.+.++..+.|..|.|+..|..
T Consensus 142 ~R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 142 DRCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred HhhCCCcchhhceeeeecCeEEEEecCcH
Confidence 236677899999999999998753
No 80
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=47.96 E-value=92 Score=22.63 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=14.6
Q ss_pred CceEEEEECCEEEEEEec
Q 027026 199 EKIQAEVKDGVLYITIPK 216 (229)
Q Consensus 199 ~~IkA~~~nGvL~ItiPK 216 (229)
=.+++.++||-..+++-.
T Consensus 68 y~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 68 YTLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEEECCEEEEEEEE
Confidence 357888999999988864
No 81
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=47.13 E-value=54 Score=22.64 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=30.9
Q ss_pred CCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEE--EECCEEEEEEe
Q 027026 141 RNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAE--VKDGVLYITIP 215 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~--~~nGvL~ItiP 215 (229)
++.|+|.++++.+.++|.+ |. ..+.||.. |+.. .+|+.+.+...
T Consensus 2 P~gV~v~~~~~~i~v~G~~------------------------g~--l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPK------------------------GE--LSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETTEEEEESSS------------------------SE--EEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCC------------------------Ee--EEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 5789999999999999843 22 35677754 4444 56887777654
No 82
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=44.29 E-value=48 Score=26.29 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=26.0
Q ss_pred EEEEEECCCCcccCceEEEEECCEEEEEEeccC
Q 027026 186 YSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218 (229)
Q Consensus 186 f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~ 218 (229)
|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 33456778 799999999999999999988764
No 83
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=43.96 E-value=61 Score=21.92 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=29.2
Q ss_pred CCEEEEEEEcCC-CCCCceEEEEECCEEEEEEEEe
Q 027026 127 ENDYKIRLDVPG-MSRNDVKVRVEESMLVIKAEKA 160 (229)
Q Consensus 127 ~d~y~l~~dLPG-~~kedV~V~v~~~~L~I~g~~~ 160 (229)
+..|.+.++|++ +.+++....+.++.|.|.-.+.
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~ 74 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKK 74 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEEC
Confidence 468999999986 6888899999999999997764
No 84
>PRK10568 periplasmic protein; Provisional
Probab=42.54 E-value=54 Score=27.71 Aligned_cols=25 Identities=8% Similarity=0.271 Sum_probs=20.5
Q ss_pred CCCCCCceEEEEECCEEEEEEEEec
Q 027026 137 PGMSRNDVKVRVEESMLVIKAEKAQ 161 (229)
Q Consensus 137 PG~~kedV~V~v~~~~L~I~g~~~~ 161 (229)
++++..+|+|.++++.+++.|.-..
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeCC
Confidence 5566778999999999999998864
No 85
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=37.69 E-value=53 Score=24.97 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.8
Q ss_pred CceEEEEECCEEEEEEe
Q 027026 199 EKIQAEVKDGVLYITIP 215 (229)
Q Consensus 199 ~~IkA~~~nGvL~ItiP 215 (229)
..+.+++.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45788889999999998
No 86
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=35.82 E-value=1.3e+02 Score=25.34 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.0
Q ss_pred CCCCceEEEEECCEEEEEEEE
Q 027026 139 MSRNDVKVRVEESMLVIKAEK 159 (229)
Q Consensus 139 ~~kedV~V~v~~~~L~I~g~~ 159 (229)
.-|++|+|+++++.++++|-+
T Consensus 10 ~~P~gV~V~i~~~~v~vkGpk 30 (178)
T COG0097 10 VIPAGVTVSIEGQVVTVKGPK 30 (178)
T ss_pred ecCCCeEEEEeccEEEEECCC
Confidence 348999999999999999944
No 87
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=35.19 E-value=80 Score=25.27 Aligned_cols=41 Identities=37% Similarity=0.548 Sum_probs=26.9
Q ss_pred EEEEECCCCcccCceEEEEECCEEEEEEeccCCCCCceEeec
Q 027026 187 STRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINV 228 (229)
Q Consensus 187 ~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~~~~k~i~I~i 228 (229)
.-.+.-|+++ .+.++.+.+||.|.|...+.-...+.+.|.|
T Consensus 22 ~v~v~~~~~l-~~~i~~~v~~g~L~I~~~~~~~~~~~~~v~V 62 (181)
T PF10988_consen 22 SVEVEADENL-LDRIKVEVKDGTLKISYKKNISGSKPVKVRV 62 (181)
T ss_dssp EEEEEEEHHH-HCCEEEEEETTEEEEEE-SCCTCTSTEEEEE
T ss_pred EEEEEEChhh-cceEEEEEECCEEEEEECCCcCCCccEEEEE
Confidence 3345556544 6788999999999999986554444455443
No 88
>PRK14290 chaperone protein DnaJ; Provisional
Probab=34.97 E-value=3.1e+02 Score=25.25 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=26.9
Q ss_pred eEEEEEECCCCcccCceEEEEECCEEEEEEeccCCCCCceEe
Q 027026 185 SYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDI 226 (229)
Q Consensus 185 ~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~~~~k~i~I 226 (229)
.+...|.|.+.+.-..++-..-+|.+.|.||........+.|
T Consensus 273 ~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri 314 (365)
T PRK14290 273 YVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKI 314 (365)
T ss_pred EEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEE
Confidence 344456666666666666666788899999865443444443
No 89
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=34.56 E-value=1.6e+02 Score=20.44 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=26.5
Q ss_pred eEEEEEECCCCcccCceEEEEECCEEEEEEe
Q 027026 185 SYSTRIALPDNVEFEKIQAEVKDGVLYITIP 215 (229)
Q Consensus 185 ~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiP 215 (229)
...-.|.+|..+..+.++..+.+.-|.|.+.
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 4555788999999999999999999999886
No 90
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.87 E-value=93 Score=23.38 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=27.3
Q ss_pred eEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEE
Q 027026 121 WAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE 158 (229)
Q Consensus 121 ~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~ 158 (229)
|++.+.+| .|....||++ .|.|+.+...|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccceEEEecc
Confidence 67777777 5668899986 4888899999999883
No 91
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=32.86 E-value=62 Score=24.66 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.2
Q ss_pred eEEEEECCEEEEEEec
Q 027026 201 IQAEVKDGVLYITIPK 216 (229)
Q Consensus 201 IkA~~~nGvL~ItiPK 216 (229)
+.+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 7788999999999985
No 92
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=31.00 E-value=22 Score=28.95 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=18.1
Q ss_pred CCCCcccCceEEEEECCEEEEEEe
Q 027026 192 LPDNVEFEKIQAEVKDGVLYITIP 215 (229)
Q Consensus 192 LP~~vd~~~IkA~~~nGvL~ItiP 215 (229)
|-+++..+.-.+.|.||||+|.|+
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HHhhcCccccccccccceEEEEec
Confidence 344555556677899999999987
No 93
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=30.73 E-value=67 Score=24.31 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.4
Q ss_pred ceEEEEECCEEEEEEec
Q 027026 200 KIQAEVKDGVLYITIPK 216 (229)
Q Consensus 200 ~IkA~~~nGvL~ItiPK 216 (229)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 37788899999999984
No 94
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=30.04 E-value=1.8e+02 Score=25.17 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=27.0
Q ss_pred EEEECCEEEEEEEEecccccCCCCCCCCCce------eeeeeeeeeEEEEEECCC
Q 027026 146 VRVEESMLVIKAEKAQRNEANTDGSTVEEEE------EWPSNGYGSYSTRIALPD 194 (229)
Q Consensus 146 V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~------~~~er~~g~f~r~i~LP~ 194 (229)
|.++++.|+|++.+....... ....+ ......||.|+-++.||.
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~-----~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELG-----NGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCC-----CCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 567899999999775421100 00001 012347799999999995
No 95
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=28.31 E-value=1.8e+02 Score=24.27 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=27.6
Q ss_pred CCceEEEEECCEEEEEEEEecccccCCCCCCCCCce-eeeeeeeeeEEEEEECCCC
Q 027026 141 RNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEE-EWPSNGYGSYSTRIALPDN 195 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~~~er~~g~f~r~i~LP~~ 195 (229)
+++|+| +++.|+|++.+.......- ..+.. ......||.|+-++.+|..
T Consensus 31 ~~nv~v--~~g~L~l~~~~~~~~~~~~----tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEF--SDGGLALTLTNDTYGEKPY----ACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEE--ECCeEEEEEeCCcCCCCcc----ccceEEECceEEeeEEEEEEEcCCC
Confidence 556554 5889999987643210000 00111 1123478999999999853
No 96
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=26.92 E-value=1.2e+02 Score=31.05 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=27.7
Q ss_pred eeEEEEEECCCCcccCceEEEEECCEEEEEEeccCCCCCceEeec
Q 027026 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINV 228 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~~~~k~i~I~i 228 (229)
|-|....+.-+.||...+.-.|++|.|+|.+|-.+++ ..-.|+|
T Consensus 732 g~YsS~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~-~~~~v~~ 775 (777)
T PLN02711 732 RVFASEKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS-GLSLIEY 775 (777)
T ss_pred EEEecCCCeEEEECCEEeeeEecCCEEEEEecCCCcC-CceeEEE
Confidence 3444433333444666677778899999999987743 4444444
No 97
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.91 E-value=31 Score=32.79 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=53.9
Q ss_pred CcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCc-
Q 027026 118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV- 196 (229)
Q Consensus 118 ~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v- 196 (229)
.|.+.|..+++...|.+-.|-.+...+.+...+++.+.++ |.|--++.+|..+
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~--------------------------~pyflrl~~p~~~~ 56 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSA--------------------------GPYFLRLAGPGMVE 56 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHhhhhhhcc--------------------------chhHHhhcCcchhh
Confidence 4568889999999999999966666776666666666554 4455567777666
Q ss_pred ccCceEEEE--ECCEEEEEEeccCC
Q 027026 197 EFEKIQAEV--KDGVLYITIPKASS 219 (229)
Q Consensus 197 d~~~IkA~~--~nGvL~ItiPK~~~ 219 (229)
+-..-.|.| ++|...|.+||..+
T Consensus 57 ~d~~~n~s~d~kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 57 DDARPNASYDAKDGYAHVKVPKFHP 81 (466)
T ss_pred hhccccCccccccceeEEeecCCCc
Confidence 333344444 58999999999653
No 98
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=26.10 E-value=2.7e+02 Score=20.48 Aligned_cols=39 Identities=5% Similarity=0.180 Sum_probs=31.0
Q ss_pred ceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEE
Q 027026 175 EEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITI 214 (229)
Q Consensus 175 ~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~Iti 214 (229)
.|.|.. ..-...-.|.||.++..+.++..++..-|.|.+
T Consensus 7 ~y~W~Q-T~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 7 WGCWYQ-TMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CcEEEe-EcCEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 444542 445666778999999999999999999999987
No 99
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=25.80 E-value=1e+02 Score=23.47 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=15.3
Q ss_pred CceEEEEECCEEEEEEec
Q 027026 199 EKIQAEVKDGVLYITIPK 216 (229)
Q Consensus 199 ~~IkA~~~nGvL~ItiPK 216 (229)
..+.+.+.+|||+|+++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 358899999999999964
No 100
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=25.43 E-value=89 Score=23.78 Aligned_cols=21 Identities=5% Similarity=0.256 Sum_probs=17.7
Q ss_pred CCCCCCceEEEEECCEEEEEE
Q 027026 137 PGMSRNDVKVRVEESMLVIKA 157 (229)
Q Consensus 137 PG~~kedV~V~v~~~~L~I~g 157 (229)
-|+++++++|++-+|.++++-
T Consensus 18 ~~l~~~ql~vsl~~G~v~L~n 38 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNGEVELRN 38 (118)
T ss_pred hcCCHHHeeeeeccCceEEEc
Confidence 478999999999888888764
No 101
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=25.15 E-value=1.3e+02 Score=22.13 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=28.4
Q ss_pred EEEeCCEEEEEEEc-CCCCCCceEEEEEC--CEEEEEEEEec
Q 027026 123 IRETENDYKIRLDV-PGMSRNDVKVRVEE--SMLVIKAEKAQ 161 (229)
Q Consensus 123 I~E~~d~y~l~~dL-PG~~kedV~V~v~~--~~L~I~g~~~~ 161 (229)
|.++++.+.|.+.+ ||-+++.| +.+++ +.|.|+-.-..
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i-~g~~~~~~~Lki~v~ApP 41 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSI-VGYNEWRKRVEVKIKAPP 41 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCccee-ccccCCCCeEEEEEecCC
Confidence 35678888888888 89988888 44667 77888875543
No 102
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=24.10 E-value=1.1e+02 Score=24.51 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=22.1
Q ss_pred CCCCCCceEEEEECCEEEEEEEEec
Q 027026 137 PGMSRNDVKVRVEESMLVIKAEKAQ 161 (229)
Q Consensus 137 PG~~kedV~V~v~~~~L~I~g~~~~ 161 (229)
.|+...+++|.++++.++++|....
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCC
Confidence 4888888999999999999998864
No 103
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=24.04 E-value=1.4e+02 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=20.9
Q ss_pred EECCCCcccCceEEEEECCEEEEEEecc
Q 027026 190 IALPDNVEFEKIQAEVKDGVLYITIPKA 217 (229)
Q Consensus 190 i~LP~~vd~~~IkA~~~nGvL~ItiPK~ 217 (229)
+.=|+.|.+........+|-+.+++|+.
T Consensus 149 ~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 149 FENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 4568888887666667799999999973
No 104
>PRK14276 chaperone protein DnaJ; Provisional
Probab=24.04 E-value=4.9e+02 Score=24.08 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=22.9
Q ss_pred EEEEECCCCcccCceEEEEECCEEEEEEeccCCCCCceEe
Q 027026 187 STRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDI 226 (229)
Q Consensus 187 ~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~~~~k~i~I 226 (229)
...|.|.+.+---.++...-+|.+.|.||.......++.|
T Consensus 275 ~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i 314 (380)
T PRK14276 275 TLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRL 314 (380)
T ss_pred EEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEE
Confidence 3344444555555566555677778888865443444443
No 105
>PRK14299 chaperone protein DnaJ; Provisional
Probab=23.44 E-value=4.9e+02 Score=23.05 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=20.5
Q ss_pred EECCCCcccCceEEEEECCEEEEEEeccCCCCCceEe
Q 027026 190 IALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDI 226 (229)
Q Consensus 190 i~LP~~vd~~~IkA~~~nGvL~ItiPK~~~~~k~i~I 226 (229)
|.|.+.+--..+....-+|.++|.+|.......++.|
T Consensus 209 Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl 245 (291)
T PRK14299 209 VPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRL 245 (291)
T ss_pred cCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEE
Confidence 3333444444555555578888888865443344433
No 106
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=23.41 E-value=70 Score=22.57 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.7
Q ss_pred ECCEEEEEEeccCCCCCceEee
Q 027026 206 KDGVLYITIPKASSTAKIVDIN 227 (229)
Q Consensus 206 ~nGvL~ItiPK~~~~~k~i~I~ 227 (229)
.+|.|.+.+||+.-+..++.++
T Consensus 9 ~~g~l~~YvpKKDLEE~Vv~~e 30 (67)
T TIGR02934 9 RAGELSAYVPKKDLEEVIVSVE 30 (67)
T ss_pred CCCCEEEEEECCcchhheeeee
Confidence 3678999999988766666654
No 107
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=99 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=24.6
Q ss_pred EEEcC-CCCCCceEEEEE-CCEEEEEEEEec
Q 027026 133 RLDVP-GMSRNDVKVRVE-ESMLVIKAEKAQ 161 (229)
Q Consensus 133 ~~dLP-G~~kedV~V~v~-~~~L~I~g~~~~ 161 (229)
+.-|| |++++.|.=.+. +|.|+|+|.+..
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 56788 999999999995 689999997754
No 108
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=21.81 E-value=2.4e+02 Score=20.34 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCCceEEEEECCEEEEEEEE
Q 027026 131 KIRLDVPGMSRNDVKVRVEESMLVIKAEK 159 (229)
Q Consensus 131 ~l~~dLPG~~kedV~V~v~~~~L~I~g~~ 159 (229)
.|.+.+| +|-+|+++|....-+|..
T Consensus 4 ~itv~vP----adAkl~v~G~~t~~~G~~ 28 (75)
T TIGR03000 4 TITVTLP----ADAKLKVDGKETNGTGTV 28 (75)
T ss_pred EEEEEeC----CCCEEEECCeEcccCccE
Confidence 5778888 888899888887777754
No 109
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=20.98 E-value=1.3e+02 Score=20.38 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=17.3
Q ss_pred EcCCCCC-CceEEEEECCEEEEE
Q 027026 135 DVPGMSR-NDVKVRVEESMLVIK 156 (229)
Q Consensus 135 dLPG~~k-edV~V~v~~~~L~I~ 156 (229)
+-.||.. +.|+|.+.++.|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEECCEEEEe
Confidence 4468844 689999999999987
No 110
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=20.91 E-value=1.3e+02 Score=21.63 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=18.9
Q ss_pred EEEcCCCCCCceEEEEECCEEEEEEEE
Q 027026 133 RLDVPGMSRNDVKVRVEESMLVIKAEK 159 (229)
Q Consensus 133 ~~dLPG~~kedV~V~v~~~~L~I~g~~ 159 (229)
.+.+|+ +.|.|..+|+.|+|.=-.
T Consensus 19 e~~f~~---~~VeI~r~G~~lII~P~~ 42 (74)
T COG4456 19 EFRFPE---DRVEIIREGDRLIIEPLG 42 (74)
T ss_pred heecCC---cEEEEEEeCCeEEEEeCC
Confidence 355666 889999999999998543
Done!