RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027026
(229 letters)
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 104 bits (262), Expect = 1e-28
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 17/164 (10%)
Query: 73 WDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWA---------I 123
D F ++M + + I
Sbjct: 4 RDPF--DSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISI 61
Query: 124 RETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGY 183
E + K+ +PG+++ D+ + L I+A+++ ++ E E
Sbjct: 62 IEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE-----E 116
Query: 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA-SSTAKIVDI 226
I LP V+ E A+ ++GVL + +PKA SS K ++I
Sbjct: 117 EEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 160
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 102 bits (256), Expect = 9e-28
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 89 MERIMEDPF-AYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVR 147
+ DPF + P+ +ET + + D+PG+ + +VKV
Sbjct: 13 FADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVE 72
Query: 148 VEE-SMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVK 206
VE+ ++LV+ E+ + E D E G + R L ++ + E+++A ++
Sbjct: 73 VEDGNVLVVSGERTKEKEDKNDKWHRVE------RSSGKFVRRFRLLEDAKVEEVKAGLE 126
Query: 207 DGVLYITIPK---ASSTAKIVDIN 227
+GVL +T+PK K + I+
Sbjct: 127 NGVLTVTVPKAEVKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 99.9 bits (250), Expect = 2e-27
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
I+E N + + D+PG+ + ++V++++ +L I+ E+ + T+ + E
Sbjct: 9 IKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIE------RR 62
Query: 183 YGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA 217
YGS+ R ALPD+ + + I A ++GVL I IPK
Sbjct: 63 YGSFHRRFALPDSADADGITAAGRNGVLEIRIPKR 97
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 91.9 bits (229), Expect = 4e-24
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 86 METMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVK 145
M + + ++ +E R Y P + E + D+ G ++ +K
Sbjct: 1 MYYLGKELQKRS---------EELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIK 51
Query: 146 VRVEE-SMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFE-KIQA 203
RV + L+I+AE+ E ++ + I LP NV + +I
Sbjct: 52 ARVSGQNELIIEAER----------EITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISG 101
Query: 204 EVKDGVLYITIPKASSTAKIVD 225
+ ++GVL I IP A ++ +
Sbjct: 102 KYENGVLTIRIPIAGTSVFKFE 123
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 75.8 bits (186), Expect = 2e-17
Identities = 27/181 (14%), Positives = 62/181 (34%), Gaps = 37/181 (20%)
Query: 66 PVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVT---WPSQQERVRSGYRRGRTPWA 122
+ P I F + R+ + F + + Y R +
Sbjct: 4 AIHHPWIRRPFFP-------FHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLR 56
Query: 123 -----------IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGST 171
+R ++ + + LDV S ++KV+V ++ + + +R + +
Sbjct: 57 APSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQD---EHGF 113
Query: 172 VEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEV-KDGVLYITIPK--ASSTAKIVDINV 228
+ E + + +P +V+ I + + DGVL + P+ S + + I
Sbjct: 114 ISRE----------FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITR 163
Query: 229 Q 229
+
Sbjct: 164 E 164
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 71.7 bits (176), Expect = 1e-16
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
+ + + LDV S ++ V+V + + A EE +
Sbjct: 6 VPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARH-------------EERPDEHGFI 52
Query: 183 YGSYSTRIALPDNVEFEKIQAEV-KDGVLYITIPKASSTAKI 223
+ R LP V+ + + + +GVL I AS+ A +
Sbjct: 53 AREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASL 94
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 70.5 bits (173), Expect = 2e-16
Identities = 12/93 (12%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 125 ETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYG 184
T + +++ LDV + +++ V+ ++ ++ I + ++
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKH-------------AARQDEHGYISR 50
Query: 185 SYSTRIALPDNVEFEKIQAEV-KDGVLYITIPK 216
++ + LP V+ ++ + + +G L + P
Sbjct: 51 CFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 69.5 bits (170), Expect = 1e-15
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
+R + + I LDV S D+ V+V+E + I + E ++
Sbjct: 7 VRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKH-------------NERQDDHGYI 53
Query: 183 YGSYSTRIALPDNVEFEKIQAEV-KDGVLYITIPK 216
+ R LP NV+ + + DG+L + PK
Sbjct: 54 SREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPK 88
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 67.9 bits (166), Expect = 2e-15
Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 125 ETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYG 184
++ + + LDV S ++KV+V ++ + + EE ++
Sbjct: 3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKH-------------EERQDEHGFISR 49
Query: 185 SYSTRIALPDNVEFEKIQAEV-KDGVLYITIPK 216
+ + +P +V+ I + + DGVL + P+
Sbjct: 50 EFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR 82
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 62.9 bits (152), Expect = 6e-12
Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 25/146 (17%)
Query: 73 WDSFPAARTVQQMMETMERIMEDPF--AYGVTWPSQQERVRSGYRRGRTPWAIRETENDY 130
+ + + +M+ M I F T P + + ++ Y G+ + +
Sbjct: 63 FTAMD--NAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGK------DGRLHF 114
Query: 131 KIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRI 190
K+ +V ++ ++ +++ LV++A+K+ D + E I
Sbjct: 115 KVYFNVKNFKAEEITIKADKNKLVVRAQKSVACG---DAAMSES-----------VGRSI 160
Query: 191 ALPDNVEFEKIQAEV-KDGVLYITIP 215
LP +V+ IQA + D VL I P
Sbjct: 161 PLPPSVDRNHIQATITTDDVLVIEAP 186
Score = 57.9 bits (139), Expect = 3e-10
Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 13/138 (9%)
Query: 82 VQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDV---PG 138
+ I P PS+ + + + + + KI L++ P
Sbjct: 185 APVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPH 244
Query: 139 MSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEF 198
+ DVKV + + + + + + + + + P+ V+
Sbjct: 245 FAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSE----------HREFYKAFVTPEVVDA 294
Query: 199 EKIQAEVKDGVLYITIPK 216
K QAE+ DG++ + P
Sbjct: 295 SKTQAEIVDGLMVVEAPL 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 50/110 (45%)
Query: 15 IITGFPS--YRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLNQSQ-P-KKRAA----- 65
+++G P Y LR + KA S L+QS+ P +R
Sbjct: 378 VVSGPPQSLYGLNLTLR------KAKA------------PSGLDQSRIPFSERKLKFSNR 419
Query: 66 --PVSSPGIWDSF------PAARTVQQMMETMERIMEDPFAYGVTWPSQQ 107
PV+SP F PA+ + I +D V++ ++
Sbjct: 420 FLPVASP-----FHSHLLVPAS----------DLINKDLVKNNVSFNAKD 454
Score = 35.0 bits (80), Expect = 0.018
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 21/92 (22%)
Query: 64 AAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAI 123
A ++ W+SF + V++ + + F GV + Y P +I
Sbjct: 280 AVAIAETDSWESFFVS--VRKAITVL-------FFIGVR--CYEA-----YPNTSLPPSI 323
Query: 124 RE--TENDYKIR---LDVPGMSRNDVKVRVEE 150
E EN+ + L + +++ V+ V +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Score = 30.8 bits (69), Expect = 0.39
Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 73/202 (36%)
Query: 57 Q-SQPKKRAAPVSSPG----IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVR 111
Q SQ G ++ + AA+ V + +D YG S + V
Sbjct: 1624 QGSQ---------EQGMGMDLYKTSKAAQDV---WNRADNHFKD--TYGF---SILDIVI 1666
Query: 112 S---------GYRRGRTPWAIRE--TENDYKIRLDVPGMSRNDVKVRVEE-SMLVIKAEK 159
+ G +G+ IRE + ++ +D + K E + ++EK
Sbjct: 1667 NNPVNLTIHFGGEKGK---RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 160 AQRNE-ANT-------DGSTVEEEEEW---PSNGY------GSYSTRIALPDNVEFEKIQ 202
+ T + + E+ + P++ G Y+ AL
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA---AL---ASL---- 1773
Query: 203 AEVKDGVLYITIPKASSTAKIV 224
A+V ++I S ++V
Sbjct: 1774 ADV------MSI---ESLVEVV 1786
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 9e-04
Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 45/206 (21%)
Query: 31 RDF-CGRI----KAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIW--DSFPAARTVQ 83
+F C + K++ +DH+ + + W S VQ
Sbjct: 31 DNFDCKDVQDMPKSILSKE-EIDHI----IMSKDAVSGTLRL----FWTLLSKQE-EMVQ 80
Query: 84 QMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRL--DVPGMSR 141
+ +E + RI + Y +++ R+ P + + + RL D ++
Sbjct: 81 KFVEEVLRI--N---YKFLM----SPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 142 NDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG-YGSYSTRIALPDNVEFEK 200
+V R++ + + +A R N ++ G GS T +AL D K
Sbjct: 129 YNVS-RLQPYLKLRQALLELRPAKNV---LID--------GVLGSGKTWVAL-DVCLSYK 175
Query: 201 IQAEVKDGVLYITIPKASSTAKIVDI 226
+Q ++ + ++ + +S ++++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEM 201
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.053
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 15/44 (34%)
Query: 44 RGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMME 87
+ +L LQ +SL K A S+P A ++ ME
Sbjct: 19 KQALKKLQ-ASL------KLYADDSAP--------ALAIKATME 47
Score = 29.5 bits (65), Expect = 0.49
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 197 EFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 229
+K+QA +K LY A +A + I
Sbjct: 21 ALKKLQASLK---LY-----ADDSAPALAIKAT 45
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.19
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 37/103 (35%)
Query: 105 SQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNE 164
+Q +R+ P +IR+ + + RL D +V E KA+K
Sbjct: 75 AQADRLTQ------EPESIRKWREEQRKRL-----QELDAASKVMEQEWREKAKK----- 118
Query: 165 ANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKD 207
+ EEW S ++ EK + +
Sbjct: 119 ---------DLEEW----NQRQSEQV--------EKNKINNRI 140
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 31.0 bits (70), Expect = 0.29
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 120 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRN 163
P I ++ ++RL +PG + VK+ + ++A +RN
Sbjct: 297 PKPITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRN 340
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 30.2 bits (69), Expect = 0.41
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITI--PKA 217
G+ + P ++ +E I E V IT+ P+A
Sbjct: 10 GTLEAQTQGPGSMTYETILVERDQRVGIITLNRPQA 45
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 29.0 bits (66), Expect = 1.0
Identities = 4/25 (16%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 195 NVEFEKIQAEVKDGVLYITI--PKA 217
+ + + +DG+ I + K+
Sbjct: 5 ETKKQYLTVFKEDGIAEIHLHINKS 29
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 28.7 bits (65), Expect = 1.3
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 185 SYSTRIALPDNVEFEKIQAEVKDGVLYITI--PKA 217
+ +T + E + L +T+ P
Sbjct: 6 APNTSETPANGESGPDALVEQRGHTLIVTMNRPSR 40
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 28.8 bits (65), Expect = 1.3
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 179 PSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITI---PKA 217
S+ + +S+ + + + I + +DG I +
Sbjct: 3 SSHHHHHHSSGLVPRGSSTYRDIVVKKEDGFTQIVLSTRSTE 44
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 28.6 bits (65), Expect = 1.4
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
EF I A + V I + P
Sbjct: 3 EFVSIAARQEGAVGIIELARPDV 25
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 28.6 bits (64), Expect = 1.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 180 SNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITI 214
+ G GS + I D + + EV D V IT
Sbjct: 16 TQGPGSMTHAIRPVDFDNLKTMTYEVTDRVARITF 50
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 28.7 bits (65), Expect = 1.6
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
F+ I+ EV IT+ P A
Sbjct: 9 SFDTIKYEVDGHTATITLNRPDA 31
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 28.6 bits (65), Expect = 1.7
Identities = 2/23 (8%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
++ + + V I +
Sbjct: 2 SYQYVNVVTINKVAVIEFNYGRK 24
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 28.3 bits (64), Expect = 1.9
Identities = 4/23 (17%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
++ ++ E++DG+ ++ + P+
Sbjct: 7 RWKTVKVEIEDGIAFVILNRPEK 29
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 28.3 bits (64), Expect = 2.0
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
+ AE + V+ ITI P+A
Sbjct: 7 DAPGALAERRGNVMVITINRPEA 29
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 28.2 bits (64), Expect = 2.1
Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
++ E V+ +T+ P
Sbjct: 7 AARELLVERDGPVVILTMNRPHR 29
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 27.9 bits (63), Expect = 2.3
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 185 SYSTRIALPDNVEFEKIQAEVKDGVLYITI--PKA 217
S + + + + VL I + PK
Sbjct: 2 SLTGNAQAATIADPSTLVVDTVGPVLTIGLNRPKK 36
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 28.0 bits (63), Expect = 2.3
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 189 RIALPDNVEFEKIQAEVKDGVLYITI--PKA 217
R + P+ I +V D + IT+ P+A
Sbjct: 10 RPSRPEQRTEMYIDYDVSDRIATITLNRPEA 40
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 27.9 bits (63), Expect = 2.5
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
++E ++ VL I + P
Sbjct: 7 DYETLRIRRDGYVLVIGLNRPAK 29
>1i1q_A Anthranilate synthase component I; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: d.161.1.1
PDB: 1i7q_A 1i7s_A*
Length = 520
Score = 28.1 bits (63), Expect = 2.8
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 115 RRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLV 154
RGR + + D +I LD+ R D K E MLV
Sbjct: 331 PRGRRADGTLDRDLDSRIELDM----RTDHKELSEHLMLV 366
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics,
joint center F structural genomics, JCSG; HET: PG4;
2.07A {Bacteroides fragilis nctc 9343}
Length = 221
Score = 27.2 bits (60), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPK 216
G +I PDN+ IQ VKD L+++I K
Sbjct: 40 GKTDLQIYGPDNI-VALIQVAVKDNTLFLSIDK 71
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 27.5 bits (62), Expect = 4.0
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 195 NVEFEKIQAEVKDGVLYITI--PKA 217
N + + V+D + T+ A
Sbjct: 2 NAMLKFLSVRVEDHIAVATLNHAPA 26
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 27.5 bits (61), Expect = 4.1
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 194 DNVEFEKIQAEVKDGVLYITI--PKA 217
VE E + E +DGV +T+
Sbjct: 162 GEVEMEAVHLERRDGVARLTMCRDDR 187
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 27.2 bits (61), Expect = 4.3
Identities = 7/23 (30%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
E+++I+ E +G+ +TI P+
Sbjct: 11 EYDEIKYEFYEGIAKVTINRPEV 33
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 27.1 bits (61), Expect = 5.4
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 19/63 (30%)
Query: 32 DFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMER 91
D C R NR L+ L S G +D R +M ++
Sbjct: 864 DLCARTDTKKLNRRVLEKLIMS-----------------GAFDRLGPHR--AALMNSLGD 904
Query: 92 IME 94
++
Sbjct: 905 ALK 907
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 26.7 bits (60), Expect = 5.8
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
+ E+++ LYIT+ P+
Sbjct: 2 SLSYVHTEIQNDALYITLDYPEK 24
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta
protein, PSI, protein struct initiative; HET: TLA; 1.50A
{Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Length = 242
Score = 26.9 bits (59), Expect = 5.9
Identities = 10/94 (10%), Positives = 23/94 (24%), Gaps = 13/94 (13%)
Query: 15 IITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWD 74
II P Y ++ K ++ + S K +
Sbjct: 83 IIISSPVY-------LQNVSVDTKNF------IERIGGWSHLFRLAGKFVVTLDVAESNG 129
Query: 75 SFPAARTVQQMMETMERIMEDPFAYGVTWPSQQE 108
S + ++ + M + + + E
Sbjct: 130 SDNVSEYLRDIFSYMGGQILHQVSITNSLKDIAE 163
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 26.8 bits (60), Expect = 6.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 197 EFEKIQAEVKDGVLYITI 214
+E I+A + VL T
Sbjct: 6 SYETIKARLDGTVLSATF 23
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 26.4 bits (59), Expect = 7.0
Identities = 4/23 (17%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
+ + + D V +T+ P++
Sbjct: 7 DSPVLLVDTTDRVRTLTLNRPQS 29
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 26.4 bits (59), Expect = 7.3
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 185 SYSTRIALPDNVEFEKIQAEVKDGVLYITI 214
T ++ FE + +DG+ I
Sbjct: 12 DLGTENLYFQSMGFETLVVTSEDGITKIMF 41
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 26.5 bits (59), Expect = 7.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 198 FEKIQAEVKDGVLYITIPKA-SST-------AKIVDINV 228
+ K + E D VL +T+ S T +K VDI V
Sbjct: 100 YLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPV 138
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 26.4 bits (59), Expect = 7.5
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 197 EFEKIQAEVKDGVLYITI 214
+ ++ + GV I +
Sbjct: 7 AYSTLRVSSEHGVARIIL 24
>2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative;
hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB:
2xcy_A* 2xzj_A* 2xzk_A*
Length = 386
Score = 26.6 bits (57), Expect = 7.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 17 TGFPSYRSPPLLRNRDFCGRIKAVADNR 44
GF S+R P ++R GRI A A+ R
Sbjct: 33 IGFHSFRIPAVVRTTT--GRILAFAEGR 58
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 26.4 bits (59), Expect = 8.6
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 2/23 (8%)
Query: 197 EFEKIQAEVKDGVLYITI--PKA 217
++ I G+ I I P
Sbjct: 8 HYDDILYYKAGGIAKIVINRPHK 30
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H
binding protein complex; HET: CSS HEC; 1.77A {Starkeya
novella} PDB: 3ocd_A*
Length = 275
Score = 26.3 bits (57), Expect = 9.0
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 57 QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMER 91
Q+ P+ + ++P R Q + TM+
Sbjct: 197 QALPQLDVPGKDAQLTMATWPTYRVSQSALRTMQH 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.382
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,496,220
Number of extensions: 201552
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 57
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.2 bits)