BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027028
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
Length = 241
Score = 284 bits (726), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 181/239 (75%), Gaps = 14/239 (5%)
Query: 5 FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
F+ NPLSL+VPDPAFESWLRDSGYLE+LD T+ +A A +++++ ++
Sbjct: 3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62
Query: 55 TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
++IT SLL L T SLLT+NPF+KL+ DDFS T WT FIG SYSFPSS
Sbjct: 63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122
Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182
Query: 171 YPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
+P +R++ + I QCAT V+L LNVQMALF ALAISY VMILHA FRKL+PSK+P+R R
Sbjct: 183 HPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSKKPTRGR 241
>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1
Length = 182
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 100 LGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFF 159
L ++SFPSS RV +N+ + NY+ + + +L P+A++ I+ W F
Sbjct: 29 LSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRPIAILAFIAVGLAWFFL 88
Query: 160 KFCSDK----WNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAA 215
F ++ + + I VL+ +LV V + + +V+ILHAA
Sbjct: 89 YFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVT---TGVWLRALTTVGFGVLVLILHAA 145
Query: 216 FRK 218
R
Sbjct: 146 LRG 148
>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1
Length = 188
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 13/147 (8%)
Query: 78 AKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFAC 137
AK D A SW F L S P + R+ N+ + NYA + +
Sbjct: 25 AKQRIKDGLATRRSWRVMF--DLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFF 82
Query: 138 SLYQMPLALVGLISSLALWDFFKFCSD------KWNWDRYPVIRQVLVRIAQCATLVVLM 191
SL P +L+ + LW F F D ++ D R VL+ ++ T+V+L+
Sbjct: 83 SLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDD----RAVLIGLS-VITIVLLL 137
Query: 192 LLNVQMALFCALAISYIVMILHAAFRK 218
L N + AL +++++HA RK
Sbjct: 138 LTNATFNIVAALMAGAVLVLIHAVIRK 164
>sp|Q9FH16|PR1G2_ARATH PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1
Length = 186
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 101 GSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQM----PLALVGLISSLALW 156
G +S P S +L LR N + NY I+ C+ + + P+AL+ + + +ALW
Sbjct: 45 GDFSLPESFSSLLLRSKTNFNYFFVNYT---IIVSTCAAFALITASPVALIVVGAIIALW 101
Query: 157 DFFKFCSDK----WNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMIL 212
F F + W+ + V + ++ A++ + N + L +++ ++ I+
Sbjct: 102 LIFHFFREDPLILWS---FQVGDRTVLLFLVLASVWAIWFTNSAVNLAVGVSVGLLLCII 158
Query: 213 HAAFRK 218
HA FR
Sbjct: 159 HAVFRN 164
>sp|A8G4Z1|ACSF_PROM2 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
OS=Prochlorococcus marinus (strain MIT 9215) GN=acsF
PE=3 SV=1
Length = 390
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 19 FESWLRDSG-YLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPF 77
FE+W +D + + D +V + S K T +T TH L Y + F L +PF
Sbjct: 204 FENWCQDENRHGDFFDALMKAQPRSVKSLSNKITIGGSTFTHPLFDYFHRFRYFLNNHPF 263
>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
Length = 189
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 115 RVHENVKRYARNYA--SLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDK------W 166
R+ N+ + NYA LFILF SL P +L+ L + W F F D+ +
Sbjct: 60 RIKTNLGYFRANYAIGVLFILF--LSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGY 117
Query: 167 NWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRK 218
D R VL+ ++ T+V+L+L + + +L + +++++HAA R+
Sbjct: 118 QIDD----RTVLIGLS-VLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRR 164
>sp|Q9FZ63|PR1F1_ARATH PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1
Length = 180
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 100 LGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFF 159
LGS++FP T+ R+ N + NY + + SL P +L+ L++ L W F
Sbjct: 45 LGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFL 104
Query: 160 KFCSDK--WNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFR 217
F D+ +DR R VL+ I TL +L L + ++ + A+ + ++ HAA R
Sbjct: 105 YFLRDEPLTVFDREIDHRIVLI-IMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVR 163
Query: 218 K 218
K
Sbjct: 164 K 164
>sp|Q9ZWD1|PR1G1_ARATH PRA1 family protein G1 OS=Arabidopsis thaliana GN=PRA1G1 PE=2 SV=1
Length = 187
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 92 WTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLIS 151
W EF+ A GS PSS RV N+ +A NY L L P+ALV + S
Sbjct: 40 WWSEFL-AFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAASITLFLIGDPMALVTVAS 98
Query: 152 SLALWDFFKFCSDKWNWDRYPVI-------RQVLVRIAQCATLVVLMLLNVQMALFCALA 204
+A+W F D +P++ +V+V +L L +N L +
Sbjct: 99 FVAMWLLLYFYRD------HPLVLYGRHISDRVIVFGLILGSLWALWFINSLQCLILGVV 152
Query: 205 ISYIVMILHAAFRK 218
S ++ ++HA R
Sbjct: 153 TSVLLCLVHAIIRN 166
>sp|Q6Y5M6|PMIP_COPDI Mitochondrial intermediate peptidase OS=Coprinellus disseminatus
GN=OCT1 PE=3 SV=1
Length = 773
Score = 33.9 bits (76), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 46 ASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSF 105
AS T ++ +LL L+ FA LT DD AKTP F+ AL ++
Sbjct: 300 ASNSSTPEQISVLEALLRKRAELAQLIGRPSFAHLTLDDKMAKTPENVSNFLDALMDHTR 359
Query: 106 P---SSPHTLKLR--VHENV 120
P + HTL R H N+
Sbjct: 360 PFARRALHTLAQRKQAHHNL 379
>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 77 FAKLTT---DDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFIL 133
F++L+T D S + P WT E I S + P S R+ +N+ + NY ++ L
Sbjct: 30 FSRLSTSIRDGLSQRRP-WT-ELIDR-SSMARPESLTDALSRIRKNLAYFKVNYVAIVSL 86
Query: 134 FFACSLYQMPLALVGLISSLALWDFFKF--CSDK--WNWDRYPVIRQVLVRIAQCATLVV 189
A SL+ PL+L+ LI L W F SD+ + R R+ L+ + +T+VV
Sbjct: 87 VLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALV-LSTIVV 145
Query: 190 LMLLNVQMALFCALAISYIVMILHAAF 216
+ + +V L AL I ++ +H AF
Sbjct: 146 VFMTSVGSLLTSALMIGVAIVCVHGAF 172
>sp|Q9SIY7|PR1B2_ARATH PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1
Length = 213
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 115 RVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKF--CSDK--WNWDR 170
R+ +N+ + NY+++ L A SL P +L+ L+S L W F SD+ + R
Sbjct: 70 RIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGR 129
Query: 171 YPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFR 217
R+ L+ + T+VV+ + +V L AL I ++ LH AFR
Sbjct: 130 SFSDRETLLGLV-LTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFR 175
>sp|Q9LYQ4|PR1B6_ARATH PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1
Length = 216
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 102 SYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKF 161
++S P S RV +N + NY +L + A SL P AL L S A W F F
Sbjct: 55 AFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYF 114
Query: 162 CSDKWNWDRYPVIRQ------VLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAA 215
D+ VI + I +T+VV+ + +V L LA+ + + +H A
Sbjct: 115 FRPA---DQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGA 171
Query: 216 FR 217
FR
Sbjct: 172 FR 173
>sp|A4T8J9|ATPFD_MYCGI ATP synthase subunit b-delta OS=Mycobacterium gilvum (strain
PYR-GCK) GN=atpFH PE=3 SV=1
Length = 445
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 44 TTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSY 103
+ A ++ T TT+ L +S T+N TDD +AKT R F G LGS
Sbjct: 189 SVADGADSDTLTTVADELSGVAKVLLSETTLNKHLAEPTDDSTAKTRLVERLFDGKLGSN 248
Query: 104 SFP 106
S
Sbjct: 249 SLE 251
>sp|Q8GWC3|PR1A2_ARATH PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1
Length = 209
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 94 REFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVG 148
R F ++FP S K R+ N+ Y NY L I +L PLALVG
Sbjct: 25 RSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVG 79
>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1
Length = 223
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 102 SYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKF 161
+++ P S R +N + NY + L SL P +L+ L+ A W F
Sbjct: 65 AFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYL 124
Query: 162 --CSDK------WNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILH 213
SD+ ++ Y + +++ +T+ V+ +V L AL I + +H
Sbjct: 125 FRPSDRPLILFGRSFSEYETLGGLIL-----STIAVIFFTSVGSVLISALMIGIATICVH 179
Query: 214 AAFR 217
AFR
Sbjct: 180 GAFR 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,452,560
Number of Sequences: 539616
Number of extensions: 2685951
Number of successful extensions: 12331
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 11675
Number of HSP's gapped (non-prelim): 528
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)