Query 027028
Match_columns 229
No_of_seqs 119 out of 410
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3142 Prenylated rab accepto 100.0 9.7E-34 2.1E-38 241.2 12.1 136 82-220 31-167 (187)
2 PF03208 PRA1: PRA1 family pro 100.0 9.1E-30 2E-34 208.8 16.5 134 86-221 5-141 (153)
3 KOG4050 Glutamate transporter 99.8 2.1E-20 4.6E-25 155.6 14.1 128 89-220 19-154 (188)
4 COG5130 YIP3 Prenylated rab ac 99.7 1.1E-17 2.4E-22 137.0 9.8 137 81-220 22-159 (169)
5 PRK11715 inner membrane protei 72.9 41 0.00089 32.8 10.6 36 125-160 304-348 (436)
6 PF06123 CreD: Inner membrane 72.3 46 0.001 32.4 10.7 35 125-159 298-341 (430)
7 COG4129 Predicted membrane pro 52.9 1.9E+02 0.0042 27.1 10.8 49 101-156 46-95 (332)
8 COG5144 TFB2 RNA polymerase II 45.6 6.7 0.00014 37.1 -0.1 26 1-30 48-73 (447)
9 PF08260 Kinin: Insect kinin p 44.0 5.3 0.00011 17.7 -0.5 7 16-22 1-7 (8)
10 COG4452 CreD Inner membrane pr 41.3 3.5E+02 0.0076 26.4 11.1 35 125-159 298-341 (443)
11 PF06645 SPC12: Microsomal sig 40.5 1.2E+02 0.0026 22.3 5.9 36 177-212 15-50 (76)
12 PF05975 EcsB: Bacterial ABC t 35.5 3.8E+02 0.0082 25.1 13.3 72 64-142 228-301 (386)
13 PF05879 RHD3: Root hair defec 34.0 72 0.0016 33.0 5.2 34 127-160 652-689 (742)
14 PF09991 DUF2232: Predicted me 33.5 3.2E+02 0.0069 23.6 10.6 41 182-222 44-84 (290)
15 PF11639 HapK: REDY-like prote 32.1 16 0.00035 28.9 0.1 17 13-29 13-29 (104)
16 PF01350 Flavi_NS4A: Flaviviru 29.1 3.4E+02 0.0074 22.7 8.6 46 178-227 79-125 (144)
17 PF11674 DUF3270: Protein of u 27.7 1.8E+02 0.0038 22.4 5.2 20 193-212 64-83 (90)
18 COG1575 MenA 1,4-dihydroxy-2-n 26.3 4.4E+02 0.0096 24.6 8.5 109 110-223 90-205 (303)
19 PF09921 DUF2153: Uncharacteri 25.1 33 0.00072 28.0 0.8 10 17-26 47-56 (126)
20 cd01785 PDZ_GEF_RA Ubiquitin-l 24.8 13 0.00029 28.2 -1.4 23 104-126 62-84 (85)
21 PF04277 OAD_gamma: Oxaloaceta 22.0 2.1E+02 0.0046 20.3 4.6 21 200-220 17-37 (79)
22 PF12959 DUF3848: Protein of u 22.0 34 0.00074 26.9 0.3 30 6-40 62-92 (101)
23 PF04791 LMBR1: LMBR1-like mem 22.0 6.9E+02 0.015 23.7 9.9 13 112-124 115-127 (471)
24 PF03374 ANT: Phage antirepres 21.5 49 0.0011 25.1 1.1 19 12-30 34-52 (111)
25 PRK10527 hypothetical protein; 21.1 4.5E+02 0.0097 21.2 11.1 8 141-148 28-35 (125)
26 KOG3471 RNA polymerase II tran 20.9 34 0.00074 33.4 0.1 30 1-34 55-84 (465)
27 PF11241 DUF3043: Protein of u 20.6 3.2E+02 0.007 23.3 6.0 41 101-141 52-94 (170)
28 PF07854 DUF1646: Protein of u 20.2 7.6E+02 0.016 23.5 9.3 12 112-123 17-28 (347)
29 PF09771 Tmemb_18A: Transmembr 20.1 4.4E+02 0.0096 21.5 6.4 12 113-124 13-24 (125)
No 1
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-34 Score=241.24 Aligned_cols=136 Identities=26% Similarity=0.412 Sum_probs=123.7
Q ss_pred hhhhhcCCCCchhhhhhcCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027028 82 TDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKF 161 (229)
Q Consensus 82 ~~dls~~rrpW~efFlgd~~~fs~P~s~~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl~Li~l~~~~~~w~~l~~ 161 (229)
++.++++|| |+||| |.++|++|+|++|+.+|+++|+.|||.||.+++.++.++++++||++|+++++++++|.++|+
T Consensus 31 ~~~lst~Rp-W~ef~--d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~LY~ 107 (187)
T KOG3142|consen 31 QSGLSTRRP-WSEFF--DRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFLYF 107 (187)
T ss_pred HHHHhccCC-HHHHH--cccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHheee
Confidence 455666665 99999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccc-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 027028 162 CSDKW-NWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLS 220 (229)
Q Consensus 162 ~~d~~-~~~r~pi~~~~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~ 220 (229)
.||+. ......+.++.++++++++|++++|+++++.+++|++++++++|+.||+||++|
T Consensus 108 ~rd~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~d 167 (187)
T KOG3142|consen 108 LRDEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNTD 167 (187)
T ss_pred ecCCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhChH
Confidence 99762 222224557788999999999999999999999999999999999999999987
No 2
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=99.97 E-value=9.1e-30 Score=208.81 Aligned_cols=134 Identities=24% Similarity=0.416 Sum_probs=118.7
Q ss_pred hcCCCCchhhhhhcCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcc-
Q 027028 86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSD- 164 (229)
Q Consensus 86 s~~rrpW~efFlgd~~~fs~P~s~~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl~Li~l~~~~~~w~~l~~~~d- 164 (229)
..++|||+||| |.++|+.|+|.+|+.+|+++|+.|||+||+++++++++++++++|+.++++++++++|++++..++
T Consensus 5 ~~~~Rpw~eF~--~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03208_consen 5 LSPLRPWREFF--DTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRKE 82 (153)
T ss_pred cCCCCCHHHHh--CccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34566799999 999999999999999999999999999999999999999999999999999999999998887665
Q ss_pred --ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 027028 165 --KWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSP 221 (229)
Q Consensus 165 --~~~~~r~pi~~~~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~~ 221 (229)
+.......+.++.++.++.+++++++++++++.+++|+++++++++++||+||+++-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~ 141 (153)
T PF03208_consen 83 NDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDL 141 (153)
T ss_pred CcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 222233344566778889999999999999999999999999999999999999884
No 3
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-20 Score=155.55 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=103.0
Q ss_pred CCCchhhhhhcCCCCCCCC--ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-H-HHHHHhcc
Q 027028 89 TPSWTREFIGALGSYSFPS--SPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLAL-W-DFFKFCSD 164 (229)
Q Consensus 89 rrpW~efFlgd~~~fs~P~--s~~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl~Li~l~~~~~~-w-~~l~~~~d 164 (229)
.|.|.||++| ++||..|+ ++++|++|+.+|+.|||+||+++++..+.+..+.+|..+++.++..++ . ..++....
T Consensus 19 lRa~ddF~lg-S~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa~~~ 97 (188)
T KOG4050|consen 19 LRALDDFLLG-SDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWAASA 97 (188)
T ss_pred chhHHHhccC-cccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999994 99999998 899999999999999999999999999999999999998874444432 2 23332222
Q ss_pred ccC--C--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 027028 165 KWN--W--DRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLS 220 (229)
Q Consensus 165 ~~~--~--~r~pi~~~~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~ 220 (229)
+-. . .+||. ..++++..+++++++..|+..++.+++..+++++++||++|-..
T Consensus 98 ~a~~krmr~~hp~---~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn 154 (188)
T KOG4050|consen 98 DANIKRMRTDHPL---VTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN 154 (188)
T ss_pred cHHHHHHhhcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 211 1 34554 35567888899999999999999999999999999999998654
No 4
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-17 Score=136.97 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=113.6
Q ss_pred chhhhhcCCCCchhhhhhcCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 027028 81 TTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFK 160 (229)
Q Consensus 81 ~~~dls~~rrpW~efFlgd~~~fs~P~s~~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl~Li~l~~~~~~w~~l~ 160 (229)
..+-|...+. -+||| |..|.++|.+++|+..|+-.|+.||..||..+...+.+|.+++||++|+++.+.+++.+.++
T Consensus 22 ~~q~L~~~~~-~~eFf--ni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~ 98 (169)
T COG5130 22 IKQALGDKDV-TREFF--NIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIR 98 (169)
T ss_pred HHHHhcCccc-HHHHh--ccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehh
Confidence 3344444443 48899 99999999999999999999999999999999999999999999999999888887766666
Q ss_pred HhccccCC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 027028 161 FCSDKWNW-DRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLS 220 (229)
Q Consensus 161 ~~~d~~~~-~r~pi~~~~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~ 220 (229)
..+.+.-. +-....++.+|.+++++.+++-++.++..+++|..+++.++++.||++..+.
T Consensus 99 kl~g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p 159 (169)
T COG5130 99 KLRGRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEP 159 (169)
T ss_pred hcccCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCc
Confidence 55543111 1111226679999999999999999999999999999999999999987653
No 5
>PRK11715 inner membrane protein; Provisional
Probab=72.94 E-value=41 Score=32.79 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHHH
Q 027028 125 RNYASLFILFFACSLY---------QMPLALVGLISSLALWDFFK 160 (229)
Q Consensus 125 ~NY~li~l~~~~~~Li---------~~Pl~Li~l~~~~~~w~~l~ 160 (229)
..|.++++++.+.+++ .||+.=+...+.+++++.+-
T Consensus 304 ~KYgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLL 348 (436)
T PRK11715 304 VKYAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLL 348 (436)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHH
Confidence 4688888888776654 59988776555555554443
No 6
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=72.27 E-value=46 Score=32.37 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHH
Q 027028 125 RNYASLFILFFACSLY---------QMPLALVGLISSLALWDFF 159 (229)
Q Consensus 125 ~NY~li~l~~~~~~Li---------~~Pl~Li~l~~~~~~w~~l 159 (229)
.-|.++++++.+.+++ .||+.=+...+.+++++.+
T Consensus 298 ~KYgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlL 341 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLL 341 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 4588888888777655 5998876655555554433
No 7
>COG4129 Predicted membrane protein [Function unknown]
Probab=52.93 E-value=1.9e+02 Score=27.12 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=29.0
Q ss_pred CCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHH
Q 027028 101 GSYSFPSSPHTLKLRVHENVKRYARNYASLFILFF-ACSLYQMPLALVGLISSLALW 156 (229)
Q Consensus 101 ~~fs~P~s~~ea~~Rv~~NL~yF~~NY~li~l~~~-~~~Li~~Pl~Li~l~~~~~~w 156 (229)
=+-+.++|...+.+|+-.|. +-+++.+. +...-.+|+.+-+.++++...
T Consensus 46 l~~t~~~s~~~~~~r~~g~~-------iG~~~a~l~~~l~g~~~~~~~v~~~i~i~~ 95 (332)
T COG4129 46 LSPTIKRSLKRALQRLLGNA-------LGAILAVLFFLLFGQNPIAFGVVLLIIIPL 95 (332)
T ss_pred ccCcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 44566667777888877665 33333333 333347888877755555443
No 8
>COG5144 TFB2 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]
Probab=45.64 E-value=6.7 Score=37.15 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCCcccCCCcccccCchHHHHhhhhcCchh
Q 027028 1 MGKVFASNPLSLNVPDPAFESWLRDSGYLE 30 (229)
Q Consensus 1 ~~~~f~~nplsl~~~~~~~~~w~~d~~~~~ 30 (229)
|.|.|++||.||+ +++.|.+.++-+-
T Consensus 48 m~mlfn~~~v~ll----d~d~wik~~~Ki~ 73 (447)
T COG5144 48 MDMLFNSHSVSLL----DEDEWIKETLKIL 73 (447)
T ss_pred HHHHcCCCCcchh----hHHHHHhhhhHHH
Confidence 7799999987775 8999999998653
No 9
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=44.04 E-value=5.3 Score=17.70 Aligned_cols=7 Identities=86% Similarity=1.853 Sum_probs=5.2
Q ss_pred chHHHHh
Q 027028 16 DPAFESW 22 (229)
Q Consensus 16 ~~~~~~w 22 (229)
||+|.+|
T Consensus 1 ~pafnsw 7 (8)
T PF08260_consen 1 DPAFNSW 7 (8)
T ss_pred Ccccccc
Confidence 5778777
No 10
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=41.28 E-value=3.5e+02 Score=26.40 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHH
Q 027028 125 RNYASLFILFFACSLY---------QMPLALVGLISSLALWDFF 159 (229)
Q Consensus 125 ~NY~li~l~~~~~~Li---------~~Pl~Li~l~~~~~~w~~l 159 (229)
.-|.++++.+.+.+.+ .||+.-++....+.+++.+
T Consensus 298 ~kYaIlfI~Ltf~afFifE~lt~~~~Hp~QY~LVGlsLv~FYLL 341 (443)
T COG4452 298 TKYAILFIGLTFMAFFIFEVLTGQRLHPMQYLLVGLSLVMFYLL 341 (443)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 4588888877766554 5999877655555554433
No 11
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=40.45 E-value=1.2e+02 Score=22.29 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027028 177 VLVRIAQCATLVVLMLLNVQMALFCALAISYIVMIL 212 (229)
Q Consensus 177 ~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVll 212 (229)
..+.+..+++.+.-|+++.....+++.+++++++++
T Consensus 15 ~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~l 50 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLL 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777778888777777777777666654
No 12
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=35.51 E-value=3.8e+02 Score=25.11 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=34.7
Q ss_pred hHHHHhhhhhcCcccccchhhhhcCCCCchhhhhhcCCCCCCCCChHHHHHH-HHHhHHHHHHHHHHHHHHHHH-HHHhh
Q 027028 64 YLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR-VHENVKRYARNYASLFILFFA-CSLYQ 141 (229)
Q Consensus 64 ~~~~~~~l~~~npf~~l~~~dls~~rrpW~efFlgd~~~fs~P~s~~ea~~R-v~~NL~yF~~NY~li~l~~~~-~~Li~ 141 (229)
+...+.++||=-|-.+-+ .+||||-|... ..=+........+...| .-+|=. |-..|+=+.++..+ +..+.
T Consensus 228 r~yrf~nlFtdVp~~~~~-----vkRR~~Ld~ll-~~~~~~~~~~~~yLy~r~flR~~e-y~gl~lRL~~i~~l~i~~~~ 300 (386)
T PF05975_consen 228 RFYRFFNLFTDVPQLKKS-----VKRRRYLDFLL-RFLKKRQKNTYLYLYLRTFLRSGE-YLGLYLRLTLIGALLIFFLP 300 (386)
T ss_pred HHHHHHHHhcCCCCCCCC-----CCCCccchhhH-hhCCCCCccHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHHHHh
Confidence 455566677766643333 34667886663 22222223345555444 334433 34455544444443 34444
Q ss_pred h
Q 027028 142 M 142 (229)
Q Consensus 142 ~ 142 (229)
+
T Consensus 301 ~ 301 (386)
T PF05975_consen 301 G 301 (386)
T ss_pred H
Confidence 5
No 13
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=34.04 E-value=72 Score=33.03 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=23.4
Q ss_pred HHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHH
Q 027028 127 YASLFILFF----ACSLYQMPLALVGLISSLALWDFFK 160 (229)
Q Consensus 127 Y~li~l~~~----~~~Li~~Pl~Li~l~~~~~~w~~l~ 160 (229)
|++++++++ ++.++.||+.+.++++++++.+.+|
T Consensus 652 w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~~~~~~~ 689 (742)
T PF05879_consen 652 WMYLLLLVLGWNEFMAVLRNPLYFTLLLILGGGFYVLY 689 (742)
T ss_pred HHHHHHHHHhHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 444444444 5678899999988877777666665
No 14
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=33.48 E-value=3.2e+02 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 027028 182 AQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPS 222 (229)
Q Consensus 182 l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~~~ 222 (229)
..+.+++...+.|....+++.+..+..-++++-.+|+-.++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~ 84 (290)
T PF09991_consen 44 LLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSW 84 (290)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 33344555555666777777777777776777777765443
No 15
>PF11639 HapK: REDY-like protein HapK; InterPro: IPR021667 This family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY. The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C-terminal tail which it uses for dimer formation []. The surface of HapK has a deep cavity with consists of a kinked helix and a beta-four strand. HapK could be involved in prodigiosin biosynthesis, specifically the binding of a bipyrrole intermediate such as HBM or MBM []. ; PDB: 2JDJ_B.
Probab=32.07 E-value=16 Score=28.87 Aligned_cols=17 Identities=41% Similarity=0.901 Sum_probs=14.5
Q ss_pred ccCchHHHHhhhhcCch
Q 027028 13 NVPDPAFESWLRDSGYL 29 (229)
Q Consensus 13 ~~~~~~~~~w~~d~~~~ 29 (229)
.+...+||.|+|++-|-
T Consensus 13 gv~~~~fe~Wv~~tDy~ 29 (104)
T PF11639_consen 13 GVDPAAFERWVRETDYP 29 (104)
T ss_dssp GGGHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHhcchh
Confidence 46678999999999885
No 16
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=29.14 E-value=3.4e+02 Score=22.66 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccCCCCCCCCCC
Q 027028 178 LVRIAQCATLVVLMLLNVQMALFCAL-AISYIVMILHAAFRKLSPSKQPSR 227 (229)
Q Consensus 178 l~~~l~v~s~~lL~~t~~~~~l~~~l-~~s~~vVllHAsfR~~~~~~~~~~ 227 (229)
+-.....++..++|..|+...-+-+. .+.+++. ..-.|||.||-+.
T Consensus 79 lG~~vm~~~~~llw~ggv~~~~IAg~~lv~film----vVLiPEpg~QRS~ 125 (144)
T PF01350_consen 79 LGMLVMAVAGYLLWMGGVPPGQIAGVLLVFFILM----VVLIPEPGKQRSQ 125 (144)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHhHHHHHHHHHHH----HhcccCCCCcCCc
Confidence 33445556666777776443333222 2222211 2337888888653
No 17
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=27.72 E-value=1.8e+02 Score=22.42 Aligned_cols=20 Identities=35% Similarity=0.290 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027028 193 LNVQMALFCALAISYIVMIL 212 (229)
Q Consensus 193 t~~~~~l~~~l~~s~~vVll 212 (229)
.+.+.++.+++++|+++..+
T Consensus 64 l~t~~Af~~Ai~~Sl~~~~~ 83 (90)
T PF11674_consen 64 LNTFWAFPLAILISLAITQL 83 (90)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46677777888888766543
No 18
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=26.34 E-value=4.4e+02 Score=24.58 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=49.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHH
Q 027028 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPL-ALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLV 188 (229)
Q Consensus 110 ~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl-~Li~l~~~~~~w~~l~~~~d~~~~~r~pi~~~~l~~~l~v~s~~ 188 (229)
++.+.|+.-++.-+ =|....++...++..++++ .+++++.++++|.|- . ..+-....|+.+-.+......+.+.
T Consensus 90 ~~~k~~~~l~l~l~--~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YT--g-Gp~PlgY~gLGEi~~~vffG~l~v~ 164 (303)
T COG1575 90 QSMKPALILSLALF--LLAGLALLGVILAALSDWLVLLLGLLCIAAGILYT--G-GPFPLGYMGLGEIFVGVFFGPLIVL 164 (303)
T ss_pred ccCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeec--c-CCcCcccCCHHHHHHHHHHHHHHHH
Confidence 44555555554332 1334444444455566676 233333333444432 1 2222245566565555545555555
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHhhcccCCCCCC
Q 027028 189 VLMLLNVQM------ALFCALAISYIVMILHAAFRKLSPSK 223 (229)
Q Consensus 189 lL~~t~~~~------~l~~~l~~s~~vVllHAsfR~~~~~~ 223 (229)
.-+|..... ..-...++....|+.---+|+.|.-+
T Consensus 165 g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~ 205 (303)
T COG1575 165 GAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDI 205 (303)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHH
Confidence 556654221 11222333334445555577776433
No 19
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.14 E-value=33 Score=27.98 Aligned_cols=10 Identities=50% Similarity=1.215 Sum_probs=8.5
Q ss_pred hHHHHhhhhc
Q 027028 17 PAFESWLRDS 26 (229)
Q Consensus 17 ~~~~~w~~d~ 26 (229)
.|||+||.|-
T Consensus 47 KaFd~WLqdP 56 (126)
T PF09921_consen 47 KAFDQWLQDP 56 (126)
T ss_pred HHHHHHHcCc
Confidence 5899999985
No 20
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=24.81 E-value=13 Score=28.17 Aligned_cols=23 Identities=22% Similarity=0.441 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHhHHHHHHH
Q 027028 104 SFPSSPHTLKLRVHENVKRYARN 126 (229)
Q Consensus 104 s~P~s~~ea~~Rv~~NL~yF~~N 126 (229)
-.|+.++++..||.-|=+||-.|
T Consensus 62 RLPdql~~La~RI~Ln~RYYLKn 84 (85)
T cd01785 62 RLPDQLQNLAERIQLSSRYYLKN 84 (85)
T ss_pred cCCHHHHHHHHhhcccceEEecc
Confidence 46778999999999999999654
No 21
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=22.04 E-value=2.1e+02 Score=20.34 Aligned_cols=21 Identities=10% Similarity=0.382 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhcccCCC
Q 027028 200 FCALAISYIVMILHAAFRKLS 220 (229)
Q Consensus 200 ~~~l~~s~~vVllHAsfR~~~ 220 (229)
+..+.+.+++.+.+-.+++..
T Consensus 17 ~~L~lL~~~i~l~~~~~~~~~ 37 (79)
T PF04277_consen 17 LVLILLILVISLMSKLIRKFA 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444433
No 22
>PF12959 DUF3848: Protein of unknown function (DUF3848); InterPro: IPR024380 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences[].
Probab=22.02 E-value=34 Score=26.92 Aligned_cols=30 Identities=13% Similarity=0.465 Sum_probs=23.1
Q ss_pred cCCCcccccCchHHHHhh-hhcCchhhhhhcccccc
Q 027028 6 ASNPLSLNVPDPAFESWL-RDSGYLEILDTATTTSA 40 (229)
Q Consensus 6 ~~nplsl~~~~~~~~~w~-~d~~~~~~~~~~~~~~~ 40 (229)
++||| +.-++.|+ +|+||.+.+-.+-.+.|
T Consensus 62 sp~PL-----~~iY~~w~~~et~~mD~ird~i~~~A 92 (101)
T PF12959_consen 62 SPSPL-----ADIYREWEKKETSHMDEIRDTIEDRA 92 (101)
T ss_pred CCChH-----HHHHHHHHhcccchHHHHHHHHHHHH
Confidence 56666 45789999 89999999877665555
No 23
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=22.00 E-value=6.9e+02 Score=23.70 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHH
Q 027028 112 LKLRVHENVKRYA 124 (229)
Q Consensus 112 a~~Rv~~NL~yF~ 124 (229)
++.|+++|+.||.
T Consensus 115 l~~~l~~n~~~~~ 127 (471)
T PF04791_consen 115 LKSSLKENLIYYL 127 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999875
No 24
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=21.54 E-value=49 Score=25.14 Aligned_cols=19 Identities=32% Similarity=0.707 Sum_probs=16.7
Q ss_pred cccCchHHHHhhhhcCchh
Q 027028 12 LNVPDPAFESWLRDSGYLE 30 (229)
Q Consensus 12 l~~~~~~~~~w~~d~~~~~ 30 (229)
|.+++..|-+||||.|++-
T Consensus 34 L~i~~~~l~~~Lr~~g~l~ 52 (111)
T PF03374_consen 34 LGIGRNKLFQWLREKGWLY 52 (111)
T ss_pred hCCCHHHHHHHHHhCCceE
Confidence 4778899999999999993
No 25
>PRK10527 hypothetical protein; Provisional
Probab=21.13 E-value=4.5e+02 Score=21.21 Aligned_cols=8 Identities=25% Similarity=0.604 Sum_probs=4.5
Q ss_pred hhhHHHHH
Q 027028 141 QMPLALVG 148 (229)
Q Consensus 141 ~~Pl~Li~ 148 (229)
+-|+.|++
T Consensus 28 TTPFlLLA 35 (125)
T PRK10527 28 TTPFILLA 35 (125)
T ss_pred CcHHHHHH
Confidence 56665544
No 26
>KOG3471 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription; Replication, recombination and repair]
Probab=20.93 E-value=34 Score=33.37 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=24.5
Q ss_pred CCCcccCCCcccccCchHHHHhhhhcCchhhhhh
Q 027028 1 MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDT 34 (229)
Q Consensus 1 ~~~~f~~nplsl~~~~~~~~~w~~d~~~~~~~~~ 34 (229)
|-|.|+++| ||..++|.|++-+|-.|.-+.
T Consensus 55 m~MLf~~~p----VP~a~~~~Wv~~~~tk~q~ea 84 (465)
T KOG3471|consen 55 MQMLFKDQP----VPLADVDLWVKVEETKEQEEA 84 (465)
T ss_pred HHHHhcCCC----ccHHHHHHHhhhhhHHHHHHH
Confidence 567888887 688999999999988876554
No 27
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=20.57 E-value=3.2e+02 Score=23.35 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=23.2
Q ss_pred CCCCCCCChHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHhh
Q 027028 101 GSYSFPSSPHTLKLRVHENV--KRYARNYASLFILFFACSLYQ 141 (229)
Q Consensus 101 ~~fs~P~s~~ea~~Rv~~NL--~yF~~NY~li~l~~~~~~Li~ 141 (229)
++|=.|.+-+....=++.-+ .+.-++|++-+++++++..+.
T Consensus 52 eryLp~RDrGP~Rr~vRD~VDsR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 52 ERYLPPRDRGPVRRYVRDYVDSRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred hhcCCcccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 34555555444443333333 566677877777666665544
No 28
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=20.23 E-value=7.6e+02 Score=23.55 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=10.0
Q ss_pred HHHHHHHhHHHH
Q 027028 112 LKLRVHENVKRY 123 (229)
Q Consensus 112 a~~Rv~~NL~yF 123 (229)
..+++++|+.+|
T Consensus 17 ~~k~VE~NLE~F 28 (347)
T PF07854_consen 17 TVKKVEHNLEIF 28 (347)
T ss_pred HHHHHHHhHHHH
Confidence 357899999987
No 29
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=20.08 E-value=4.4e+02 Score=21.45 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=7.9
Q ss_pred HHHHHHhHHHHH
Q 027028 113 KLRVHENVKRYA 124 (229)
Q Consensus 113 ~~Rv~~NL~yF~ 124 (229)
-.|+.+++.|.|
T Consensus 13 ErRLtEvI~~l~ 24 (125)
T PF09771_consen 13 ERRLTEVINSLQ 24 (125)
T ss_pred HHHHHHHHHhcC
Confidence 467777776654
Done!