Query 027028
Match_columns 229
No_of_seqs 119 out of 410
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eap_A Lymphocyte cytosolic pr 60.0 8.9 0.00031 28.5 3.7 29 2-30 7-38 (90)
2 2jdj_A HAPK, REDY-like protein 27.7 13 0.00046 28.2 0.1 17 13-29 13-29 (105)
3 1rij_A E6APN1 peptide; Trp-CAG 20.9 31 0.0011 19.4 0.7 13 16-28 3-15 (26)
4 1ci4_A Protein (barrier-TO-aut 17.5 36 0.0012 25.2 0.6 19 10-28 50-69 (89)
5 1fjk_A Cardiac phospholamban; 16.5 1.8E+02 0.006 18.9 3.7 29 113-141 21-49 (52)
6 3fpn_B Geobacillus stearotherm 15.7 59 0.002 24.0 1.5 26 4-29 9-38 (106)
7 2ovg_A Phage lambda CRO; trans 10.6 66 0.0022 21.8 0.4 20 12-31 23-42 (66)
8 1rh5_C Secbeta; protein transl 10.4 2.2E+02 0.0075 18.7 2.9 16 200-215 35-50 (53)
9 2kyg_A CAMP-dependent protein 10.3 3.5E+02 0.012 17.0 4.1 32 98-129 4-43 (50)
10 3b5x_A Lipid A export ATP-bind 10.2 9.5E+02 0.033 22.1 8.5 20 108-127 120-139 (582)
No 1
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.01 E-value=8.9 Score=28.47 Aligned_cols=29 Identities=14% Similarity=0.398 Sum_probs=20.7
Q ss_pred CCcccCCCccccc---CchHHHHhhhhcCchh
Q 027028 2 GKVFASNPLSLNV---PDPAFESWLRDSGYLE 30 (229)
Q Consensus 2 ~~~f~~nplsl~~---~~~~~~~w~~d~~~~~ 30 (229)
||+|..=|.-..| -..++..|||+.||-|
T Consensus 7 ~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~ 38 (90)
T 2eap_A 7 GMALRNVPFRSEVLGWDPDSLADYFKKLNYKD 38 (90)
T ss_dssp CSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHH
T ss_pred cccccccccCccccccCHHHHHHHHHHcCCch
Confidence 7887655544333 3578999999999954
No 2
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=27.74 E-value=13 Score=28.23 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=14.4
Q ss_pred ccCchHHHHhhhhcCch
Q 027028 13 NVPDPAFESWLRDSGYL 29 (229)
Q Consensus 13 ~~~~~~~~~w~~d~~~~ 29 (229)
.++.++||+|.||..|=
T Consensus 13 g~d~~aFe~w~~evD~P 29 (105)
T 2jdj_A 13 VAQADAFEFWVQNVDYA 29 (105)
T ss_dssp GGGHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHhchhh
Confidence 46788999999999874
No 3
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=20.85 E-value=31 Score=19.41 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=9.6
Q ss_pred chHHHHhhhhcCc
Q 027028 16 DPAFESWLRDSGY 28 (229)
Q Consensus 16 ~~~~~~w~~d~~~ 28 (229)
++-.-+||||-|-
T Consensus 3 qellgqwlkdggp 15 (26)
T 1rij_A 3 QELLGQWLKDGGP 15 (26)
T ss_dssp HHHHHHHHHTTGG
T ss_pred HHHHHHHHHcCCC
Confidence 3456799999873
No 4
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=17.55 E-value=36 Score=25.15 Aligned_cols=19 Identities=37% Similarity=0.795 Sum_probs=15.1
Q ss_pred cccccCchHHHHhhhhc-Cc
Q 027028 10 LSLNVPDPAFESWLRDS-GY 28 (229)
Q Consensus 10 lsl~~~~~~~~~w~~d~-~~ 28 (229)
|.|.=+++.|..||+|+ |.
T Consensus 50 L~l~kd~~~F~~WLk~~~ga 69 (89)
T 1ci4_A 50 LVLKKDEDLFREWLKDTCGA 69 (89)
T ss_dssp HHTTTCHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHhCc
Confidence 44556799999999998 64
No 5
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=16.51 E-value=1.8e+02 Score=18.94 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 027028 113 KLRVHENVKRYARNYASLFILFFACSLYQ 141 (229)
Q Consensus 113 ~~Rv~~NL~yF~~NY~li~l~~~~~~Li~ 141 (229)
...-+.|+.---.|+-++.+.+.++|++.
T Consensus 21 ~~qarqnlqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 21 PQQARQNLQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888877777766553
No 6
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=15.66 E-value=59 Score=24.02 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=20.0
Q ss_pred cccCCCcccccCc----hHHHHhhhhcCch
Q 027028 4 VFASNPLSLNVPD----PAFESWLRDSGYL 29 (229)
Q Consensus 4 ~f~~nplsl~~~~----~~~~~w~~d~~~~ 29 (229)
.|..++++|.+.+ +++.+||.+-||-
T Consensus 9 ~~~~~~l~l~~G~~i~~~~l~~~L~~~GY~ 38 (106)
T 3fpn_B 9 EYRELVVSLRVGMEIERNALLRRLVDIQYD 38 (106)
T ss_dssp ----CCEEEETTCBCCHHHHHHHHHHTTCE
T ss_pred HHhhCCeEEECCCCcCHHHHHHHHHHcCCE
Confidence 4778999998777 7999999999996
No 7
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=10.58 E-value=66 Score=21.77 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=16.8
Q ss_pred cccCchHHHHhhhhcCchhh
Q 027028 12 LNVPDPAFESWLRDSGYLEI 31 (229)
Q Consensus 12 l~~~~~~~~~w~~d~~~~~~ 31 (229)
|.|-++++.+|+|+.+.+++
T Consensus 23 L~vtQ~AVS~~ir~~r~v~L 42 (66)
T 2ovg_A 23 LGVYPSSINQAIHAGRKIFL 42 (66)
T ss_dssp HTSCHHHHHHHHHHTCEEEE
T ss_pred hCCCHHHHHHHHHhCCCcee
Confidence 78899999999998776654
No 8
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=10.44 E-value=2.2e+02 Score=18.72 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 027028 200 FCALAISYIVMILHAA 215 (229)
Q Consensus 200 ~~~l~~s~~vVllHAs 215 (229)
..++++.++++++|..
T Consensus 35 ~~si~~i~~V~~L~~~ 50 (53)
T 1rh5_C 35 GVTVAFVIIEAILTYG 50 (53)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3345555556666653
No 9
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=10.26 E-value=3.5e+02 Score=17.00 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=22.0
Q ss_pred hcCCCCCCCCChHHHHHHHHH--------hHHHHHHHHHH
Q 027028 98 GALGSYSFPSSPHTLKLRVHE--------NVKRYARNYAS 129 (229)
Q Consensus 98 gd~~~fs~P~s~~ea~~Rv~~--------NL~yF~~NY~l 129 (229)
|+..++..|.++.++.+-..+ |+.-|..||+-
T Consensus 4 ~~~~~~~ip~~l~~lL~~~~~evlr~qP~Di~~Faa~yF~ 43 (50)
T 2kyg_A 4 GSMSHIQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFT 43 (50)
T ss_dssp CTTCCCCCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred cccchhcCCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 456778888887776665554 55667777763
No 10
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=10.21 E-value=9.5e+02 Score=22.09 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHhHHHHHHHH
Q 027028 108 SPHTLKLRVHENVKRYARNY 127 (229)
Q Consensus 108 s~~ea~~Rv~~NL~yF~~NY 127 (229)
+.++..+|+.+.+...+..|
T Consensus 120 ~~g~l~~rl~~d~~~i~~~~ 139 (582)
T 3b5x_A 120 STGGLLSRITYDSEQVAGAT 139 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 46888999887776555443
Done!