Query 027028
Match_columns 229
No_of_seqs 119 out of 410
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 05:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027028.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027028hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6c_ f.21.2.2 (C:) Fumarate 13.6 2.2E+02 0.016 20.4 7.4 14 141-154 64-78 (130)
2 d1r8se_ a.118.3.1 (E:) Exchang 12.6 2.2E+02 0.016 21.0 6.3 40 76-126 73-114 (187)
3 d1j8ia_ d.9.1.1 (A:) Lymphotac 12.5 47 0.0034 22.5 1.9 20 20-41 53-72 (93)
4 d2ftxb1 d.300.1.2 (B:155-213) 11.5 43 0.0032 21.2 1.3 8 121-128 46-53 (59)
5 d1ku1a_ a.118.3.1 (A:) ARF gua 10.6 2.9E+02 0.021 20.8 6.5 48 65-126 76-125 (211)
6 d1q79a2 d.218.1.3 (A:19-214) P 8.8 70 0.0051 24.4 2.0 24 7-30 5-35 (196)
7 d1f66c_ a.22.1.1 (C:) Histone 8.3 65 0.0047 22.3 1.4 19 12-30 10-28 (103)
8 d2hzaa1 a.43.1.3 (A:1-48) Nick 8.1 52 0.0038 19.8 0.7 20 10-29 4-26 (48)
9 d1tdha3 g.39.1.8 (A:247-290) E 8.0 50 0.0037 19.6 0.6 9 17-25 8-16 (44)
10 d1d5va_ a.4.5.14 (A:) Adipocyt 7.6 63 0.0046 21.9 1.0 9 112-120 48-56 (94)
No 1
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=13.59 E-value=2.2e+02 Score=20.37 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=9.3
Q ss_pred hhhHHHHH-HHHHHH
Q 027028 141 QMPLALVG-LISSLA 154 (229)
Q Consensus 141 ~~Pl~Li~-l~~~~~ 154 (229)
+||+.++. ++++++
T Consensus 64 qnP~vv~lniiaLaa 78 (130)
T d1kf6c_ 64 QNPVIVIINLITLAA 78 (130)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHH
Confidence 79999887 333333
No 2
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.56 E-value=2.2e+02 Score=20.99 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=29.1
Q ss_pred cccccchhhhhcCCCCchhhhhhcCCCCCCCCChHHHHHHHHHhH--HHHHHH
Q 027028 76 PFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENV--KRYARN 126 (229)
Q Consensus 76 pf~~l~~~dls~~rrpW~efFlgd~~~fs~P~s~~ea~~Rv~~NL--~yF~~N 126 (229)
.|+.++.++= .+.++ .+|..|.. ++...||.+=. +||+.|
T Consensus 73 ~f~~~~i~~A------LR~~l----~~f~lpgE-~Q~Idrile~Fs~~y~~~N 114 (187)
T d1r8se_ 73 EFTDLNLVQA------LRQFL----WSFRLPGK-AQKIDRMMEAFAQRYCLCN 114 (187)
T ss_dssp CCTTCCHHHH------HHHHH----HSSCCCSS-HHHHHHHHHHHHHHHHHHS
T ss_pred CcCCCcHHHH------HHHHH----HhccCCCc-HHHHHHHHHHHHHHHHHhC
Confidence 6777777553 56566 79999976 77788887766 677777
No 3
>d1j8ia_ d.9.1.1 (A:) Lymphotactin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.47 E-value=47 Score=22.52 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=15.6
Q ss_pred HHhhhhcCchhhhhhccccccc
Q 027028 20 ESWLRDSGYLEILDTATTTSAN 41 (229)
Q Consensus 20 ~~w~~d~~~~~~~~~~~~~~~~ 41 (229)
+.|+++ +++.||++......
T Consensus 53 ~~WVq~--~ik~Ld~k~~~~~~ 72 (93)
T d1j8ia_ 53 ATWVRD--VVRSMDRKSNTRNN 72 (93)
T ss_dssp CHHHHH--HHHHHHHHTTTTSC
T ss_pred hHHHHH--HHHHHHhhccCCCC
Confidence 679986 78999988766553
No 4
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.45 E-value=43 Score=21.23 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=6.6
Q ss_pred HHHHHHHH
Q 027028 121 KRYARNYA 128 (229)
Q Consensus 121 ~yF~~NY~ 128 (229)
.||.+||+
T Consensus 46 ~fF~tnYi 53 (59)
T d2ftxb1 46 DFYKTKYI 53 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 58888986
No 5
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.65 E-value=2.9e+02 Score=20.80 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=29.6
Q ss_pred HHHHhhhhhcCcccccchhhhhcCCCCchhhhhhcCCCCCCCCChHHHHHHHHHhH--HHHHHH
Q 027028 65 LYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENV--KRYARN 126 (229)
Q Consensus 65 ~~~~~~l~~~npf~~l~~~dls~~rrpW~efFlgd~~~fs~P~s~~ea~~Rv~~NL--~yF~~N 126 (229)
+..+++++ .|+.+..++= .++|+ .+|..|.- ++-..|+.+=. +||+.|
T Consensus 76 L~~y~~~f---df~~~~id~A------LR~~l----~~f~LPgE-aQ~IdRile~Fa~~Y~~~N 125 (211)
T d1ku1a_ 76 LNEYIRLF---DFSGLRVDEA------IRILL----TKFRLPGE-SQQIERIIEAFSSAYCENQ 125 (211)
T ss_dssp HHHHHHTS---CCTTCCHHHH------HHHHT----TTCCCCSS-HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhcc---CcCCCCHHHH------HHHHH----HhccCCch-HHHHHHHHHHHhHHHHhcC
Confidence 44445444 6777776542 45566 78999976 55677776654 455544
No 6
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.80 E-value=70 Score=24.38 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.4
Q ss_pred CCCcccccCchH-------HHHhhhhcCchh
Q 027028 7 SNPLSLNVPDPA-------FESWLRDSGYLE 30 (229)
Q Consensus 7 ~nplsl~~~~~~-------~~~w~~d~~~~~ 30 (229)
.-|+|+..|.++ .+++|++.|+.|
T Consensus 5 T~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~p 35 (196)
T d1q79a2 5 TSPISLAAPKETDCLLTQKLVETLKPFGVFE 35 (196)
T ss_dssp SCCSCCCCCCHHHHHHHHHHHHHHGGGTCSC
T ss_pred CCCcccCCCChHHHHHHHHHHHHHHHcCCCC
Confidence 469999999988 899999988754
No 7
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}
Probab=8.30 E-value=65 Score=22.27 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.7
Q ss_pred cccCchHHHHhhhhcCchh
Q 027028 12 LNVPDPAFESWLRDSGYLE 30 (229)
Q Consensus 12 l~~~~~~~~~w~~d~~~~~ 30 (229)
|..|-.-+++||||.+|.+
T Consensus 10 L~FpVgrv~r~L~~~~~~~ 28 (103)
T d1f66c_ 10 LQFPVGRIHRHLKSRTTSH 28 (103)
T ss_dssp CSSCHHHHHHHHHHTSCSS
T ss_pred cccChHHHHHHHhccCccc
Confidence 5567788999999999874
No 8
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.06 E-value=52 Score=19.84 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=15.2
Q ss_pred cccccCch---HHHHhhhhcCch
Q 027028 10 LSLNVPDP---AFESWLRDSGYL 29 (229)
Q Consensus 10 lsl~~~~~---~~~~w~~d~~~~ 29 (229)
.|.|+|++ .|++.+++.||-
T Consensus 4 isVslp~~Ll~~lD~~v~~~gy~ 26 (48)
T d2hzaa1 4 VTITLDDDLLETLDSLSQRRGYN 26 (48)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCC
T ss_pred EEEecCHHHHHHHHHHHHHcCCC
Confidence 46788875 677888888884
No 9
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.04 E-value=50 Score=19.61 Aligned_cols=9 Identities=56% Similarity=1.143 Sum_probs=6.5
Q ss_pred hHHHHhhhh
Q 027028 17 PAFESWLRD 25 (229)
Q Consensus 17 ~~~~~w~~d 25 (229)
.+|++|||=
T Consensus 8 s~F~~WLqC 16 (44)
T d1tdha3 8 AAFRAWLRC 16 (44)
T ss_dssp HHHHHHCSS
T ss_pred HHHHHHHHH
Confidence 368888873
No 10
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.60 E-value=63 Score=21.92 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=4.8
Q ss_pred HHHHHHHhH
Q 027028 112 LKLRVHENV 120 (229)
Q Consensus 112 a~~Rv~~NL 120 (229)
|.+-|+.||
T Consensus 48 WkNSIRHnL 56 (94)
T d1d5va_ 48 WQNSIRHNL 56 (94)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHc
Confidence 555555554
Done!