Query 027029
Match_columns 229
No_of_seqs 199 out of 1221
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 78.5 31 0.0011 29.5 12.5 31 185-215 305-335 (438)
2 1pw4_A Glycerol-3-phosphate tr 61.4 41 0.0014 28.7 9.0 39 185-223 298-338 (451)
3 2lx0_A Membrane fusion protein 28.9 73 0.0025 18.6 3.4 17 72-88 11-27 (32)
4 2knc_B Integrin beta-3; transm 26.4 60 0.002 23.1 3.4 13 98-110 42-54 (79)
5 4ain_A Glycine betaine transpo 17.9 4E+02 0.014 25.4 8.2 83 4-90 412-500 (539)
6 2i68_A Protein EMRE; transmemb 17.7 2.5E+02 0.0085 21.5 5.7 18 72-89 86-103 (137)
7 4av3_A K(+)-stimulated pyropho 17.7 6.4E+02 0.022 25.0 9.8 36 73-108 17-52 (735)
8 3l1l_A Arginine/agmatine antip 10.9 3.2E+02 0.011 23.6 5.1 14 72-85 409-422 (445)
9 2jwa_A Receptor tyrosine-prote 9.0 2.4E+02 0.0082 17.9 2.6 28 172-199 9-36 (44)
10 2knc_A Integrin alpha-IIB; tra 9.0 2.4E+02 0.0081 18.7 2.6 18 71-88 17-34 (54)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=78.52 E-value=31 Score=29.49 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHHhhhhcCHHHHHHHHHHHH
Q 027029 185 ALCTTAAVIGGKSLASQISEKIVALSGGVLF 215 (229)
Q Consensus 185 ~l~t~lav~~G~~l~~~i~~~~v~~~~g~lF 215 (229)
.++..++.+.+.++.+|++.|.+-.++.++.
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3455566677777788888887765555443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=61.44 E-value=41 Score=28.72 Aligned_cols=39 Identities=0% Similarity=-0.053 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHhhhhc--CHHHHHHHHHHHHHHHHHHHh
Q 027029 185 ALCTTAAVIGGKSLASQI--SEKIVALSGGVLFIVFGIQSF 223 (229)
Q Consensus 185 ~l~t~lav~~G~~l~~~i--~~~~v~~~~g~lFl~fg~~~l 223 (229)
.++..++.....++.+|+ +.|.+..++..+....+...+
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 345555556666677777 777666666655554554443
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=28.89 E-value=73 Score=18.62 Aligned_cols=17 Identities=24% Similarity=0.692 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027029 72 HHITTVLFFGFGLWSLW 88 (229)
Q Consensus 72 ~~~a~~lFl~fG~~~L~ 88 (229)
-.++-..|+.||+|+..
T Consensus 11 glvalltflafgfwlfk 27 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555679999999874
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.43 E-value=60 Score=23.05 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.5
Q ss_pred hhHHHHHHhhhhh
Q 027029 98 EEFEEVEKKLDAD 110 (229)
Q Consensus 98 ~e~~e~e~~~~~~ 110 (229)
.|.++-|+|....
T Consensus 42 rE~~kFEkE~~~~ 54 (79)
T 2knc_B 42 KEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3444444444433
No 5
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=17.93 E-value=4e+02 Score=25.39 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHccCC---Cc--EeehHHHHHHHHHHHHHHHHH-hhhhccccHHHHHHHHHH
Q 027029 4 VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHP---RR--LVLSGCLGALIVMTILSAVVG-WVAPNLISRKLTHHITTV 77 (229)
Q Consensus 4 ~~~~f~~sf~~iflaElGDKTql~~~~LA~r~~---~~--~V~~G~~~Al~l~t~lav~~G-~~l~~~lp~~~v~~~a~~ 77 (229)
.+.....-..++|..--.|..=++...++++.+ ++ .+++|...+.+...++-+- | .. +=..+...+++|.
T Consensus 412 i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g~~~p~~~~rifWgv~~g~va~~LL~~G-G~~~---L~aLQt~~ii~al 487 (539)
T 4ain_A 412 IMGIIAMILLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLSG-GDNA---LSNLQNVTIVAAT 487 (539)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHhC-CHHH---HHHHHhhHHHHHh
Confidence 345556667788899999999999999998743 22 3999998888777766432 2 11 2234667778887
Q ss_pred HHHHHHHHHhhhh
Q 027029 78 LFFGFGLWSLWDA 90 (229)
Q Consensus 78 lFl~fG~~~L~~~ 90 (229)
=|.++=+.+.+.-
T Consensus 488 Pf~~v~llm~~sl 500 (539)
T 4ain_A 488 PFLFVVIGLMFAL 500 (539)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766665554443
No 6
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=17.69 E-value=2.5e+02 Score=21.52 Aligned_cols=18 Identities=11% Similarity=0.088 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027029 72 HHITTVLFFGFGLWSLWD 89 (229)
Q Consensus 72 ~~~a~~lFl~fG~~~L~~ 89 (229)
..+.|+..++.|+..+..
T Consensus 86 ~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 86 PAIIGMMLICAGVLIINL 103 (137)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 446778888889988853
No 7
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=17.68 E-value=6.4e+02 Score=25.02 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhh
Q 027029 73 HITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLD 108 (229)
Q Consensus 73 ~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~ 108 (229)
++.+++=++|+++..+.-.+.++.+|+++|+.+.++
T Consensus 17 ~~~~i~~l~~a~~~~~~v~~~~~G~~~M~eIa~~I~ 52 (735)
T 4av3_A 17 FLIPLVALGFAAANFAAVVRKPEGTERMKEISSYIR 52 (735)
T ss_dssp HTHHHHHHHHHHHHHHHHHTSCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 334444456777766655555666788888866554
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=10.89 E-value=3.2e+02 Score=23.60 Aligned_cols=14 Identities=0% Similarity=-0.287 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 027029 72 HHITTVLFFGFGLW 85 (229)
Q Consensus 72 ~~~a~~lFl~fG~~ 85 (229)
....++.+++.|+.
T Consensus 409 ~~~~~~~~~~~g~~ 422 (445)
T 3l1l_A 409 EVMWSFVTLMVITA 422 (445)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444455543
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=9.02 E-value=2.4e+02 Score=17.89 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=16.2
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHhHHhh
Q 027029 172 NPFGVVLGGIIGQALCTTAAVIGGKSLA 199 (229)
Q Consensus 172 ~~~~V~~G~~~a~~l~t~lav~~G~~l~ 199 (229)
+|.+.++|.+.|.++.-.++...+-++-
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIK 36 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhhee
Confidence 4555567777775555555555555553
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.01 E-value=2.4e+02 Score=18.68 Aligned_cols=18 Identities=11% Similarity=0.403 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027029 71 THHITTVLFFGFGLWSLW 88 (229)
Q Consensus 71 v~~~a~~lFl~fG~~~L~ 88 (229)
+..++|++.+..-+..||
T Consensus 17 ~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555555
Done!