Query 027029
Match_columns 229
No_of_seqs 199 out of 1221
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 05:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027029.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027029hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 60.3 17 0.0012 27.7 8.0 36 50-85 149-184 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 54.7 25 0.0018 27.7 8.4 16 188-203 298-313 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 15.1 1.8E+02 0.013 21.2 6.6 34 54-87 364-397 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 12.6 2.8E+02 0.02 21.0 8.9 76 141-217 24-101 (447)
5 d1kqfb2 f.23.22.1 (B:246-290) 7.2 1.2E+02 0.009 17.9 2.1 11 71-81 12-22 (45)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 5.9 1.8E+02 0.013 15.6 2.2 15 4-18 5-19 (32)
7 d1jb0i_ f.23.17.1 (I:) Subunit 4.2 2.4E+02 0.018 15.8 2.1 31 59-89 3-34 (38)
8 d2bl8a1 a.29.8.2 (A:4-103) Ent 3.2 1E+02 0.0074 21.3 -0.4 12 151-162 89-100 (100)
9 d2bida_ f.1.4.1 (A:) Proapopto 3.1 1.3E+02 0.0095 23.0 0.1 7 17-23 92-98 (197)
10 d1irqa_ a.43.1.4 (A:) Omega tr 2.8 1.2E+02 0.0085 17.8 -0.4 5 156-160 2-6 (48)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=60.26 E-value=17 Score=27.74 Aligned_cols=36 Identities=11% Similarity=-0.152 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 027029 50 VMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLW 85 (229)
Q Consensus 50 l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~ 85 (229)
....++..+|.++.+.-+...........++...+.
T Consensus 149 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (417)
T d1pv7a_ 149 VGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHH
Confidence 334445555555555555555445444444443333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=54.71 E-value=25 Score=27.70 Aligned_cols=16 Identities=0% Similarity=-0.054 Sum_probs=7.0
Q ss_pred HHHHHHHhHHhhhhcC
Q 027029 188 TTAAVIGGKSLASQIS 203 (229)
Q Consensus 188 t~lav~~G~~l~~~i~ 203 (229)
..++.+.+.++.+|..
T Consensus 298 ~~~~~~~~g~~~~~~~ 313 (447)
T d1pw4a_ 298 GIPGTLLCGWMSDKVF 313 (447)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred hhhhhhhhhhhhhhcc
Confidence 3344444444444443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.12 E-value=1.8e+02 Score=21.23 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=16.6
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 027029 54 LSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL 87 (229)
Q Consensus 54 lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L 87 (229)
++-.++.++.+....+..-++.+++.+...+..+
T Consensus 364 i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 397 (417)
T d1pv7a_ 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555555555555555555544444
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.57 E-value=2.8e+02 Score=20.96 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhhccCchHHHHHHHHH-cccCCcEeehHHHH-HHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHH
Q 027029 141 SPIFLKAFSITFFGEWGDKSQLATIGLA-ADENPFGVVLGGII-GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIV 217 (229)
Q Consensus 141 ~~~f~~af~~~FlaE~GDKTQlati~LA-a~~~~~~V~~G~~~-a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~ 217 (229)
+.++...|. .+.....|++-+..+.-- .+.+.-..-.|-.. ...+...++...+..+++|...|.+-.++.++..+
T Consensus 24 w~i~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFF-GYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHH-HHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 345555544 455566676554433222 22322223344432 33444556667777788999999876666555443
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=7.17 E-value=1.2e+02 Score=17.86 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 027029 71 THHITTVLFFG 81 (229)
Q Consensus 71 v~~~a~~lFl~ 81 (229)
.+.++.+.|.+
T Consensus 12 ~Kpl~~~~~~~ 22 (45)
T d1kqfb2 12 LKPLAAAGFIA 22 (45)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555444433
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.92 E-value=1.8e+02 Score=15.62 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHh
Q 027029 4 VVQGFTKSLAMTVLS 18 (229)
Q Consensus 4 ~~~~f~~sf~~ifla 18 (229)
.+.+-+.||.+||+.
T Consensus 5 il~aa~lsfglifvg 19 (32)
T d2e74f1 5 MLYAALLSFGLIFVG 19 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH
Confidence 457778888888864
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=4.25 E-value=2.4e+02 Score=15.78 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=20.1
Q ss_pred HhhhhccccHHHHHHHHHHHHH-HHHHHHhhh
Q 027029 59 GWVAPNLISRKLTHHITTVLFF-GFGLWSLWD 89 (229)
Q Consensus 59 G~~l~~~lp~~~v~~~a~~lFl-~fG~~~L~~ 89 (229)
|.+.++++|--.+..++=.+.. .+|+..+|-
T Consensus 3 G~yAAsyLPwI~iPvv~wl~p~vvMglLFiyI 34 (38)
T d1jb0i_ 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYI 34 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chhHHHhcchhHHHHHHHHHHHHHHHHHheee
Confidence 5566777777777666655555 567666653
No 8
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=3.20 E-value=1e+02 Score=21.29 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=9.1
Q ss_pred HHhhccCchHHH
Q 027029 151 TFFGEWGDKSQL 162 (229)
Q Consensus 151 ~FlaE~GDKTQl 162 (229)
+.++-++||+|+
T Consensus 89 vY~s~~~dksQF 100 (100)
T d2bl8a1 89 LYRADYGDKSQF 100 (100)
T ss_dssp CCSSSTTCGGGC
T ss_pred eeecCCchhccC
Confidence 467778888885
No 9
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.14 E-value=1.3e+02 Score=22.97 Aligned_cols=7 Identities=43% Similarity=1.013 Sum_probs=4.3
Q ss_pred HhhcccH
Q 027029 17 LSEIGDK 23 (229)
Q Consensus 17 laElGDK 23 (229)
+||+|||
T Consensus 92 LAqiGD~ 98 (197)
T d2bida_ 92 LAQVGDS 98 (197)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666665
No 10
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.79 E-value=1.2e+02 Score=17.82 Aligned_cols=5 Identities=60% Similarity=0.999 Sum_probs=0.0
Q ss_pred cCchH
Q 027029 156 WGDKS 160 (229)
Q Consensus 156 ~GDKT 160 (229)
+||||
T Consensus 2 mgdkt 6 (48)
T d1irqa_ 2 MGDKT 6 (48)
T ss_dssp CCEEE
T ss_pred CCCce
Done!