BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027032
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 12/212 (5%)
Query: 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 72
+LHG+QY+ELYKP P + ++ EA +A + DKG ++ ++ SY+ + EL+C N+ +
Sbjct: 87 VLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGVVIIMDVYSYSEK--ELICHNQFSL 144
Query: 73 FLRGAGGFSNSSQPFSYSKYQTIPVSV-VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNP 131
FL G+GGF K + V V V IP P AV D T +QA +YRLSGD+NP
Sbjct: 145 FLVGSGGFGG--------KRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNP 196
Query: 132 LHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETL 191
LH DP A AGF +PILHGLCT GF+ R +++ D + K + +RF VYPG+TL
Sbjct: 197 LHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTL 256
Query: 192 VTEMWLQGLRVIYQVKVKERNRSALS-GFVDV 222
TEMW +G R+ +Q KV+E +S +VD+
Sbjct: 257 QTEMWKEGNRIHFQTKVQETGDIVISNAYVDL 288
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 8/221 (3%)
Query: 3 LQHNRHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESG 62
L +++ D +LHG+QY+E+ P+S ++ + + DKG A++ ++S++ ESG
Sbjct: 385 LPNSQVDFSNILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGSGAVVVTNSESFD-ESG 443
Query: 63 ELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALV 122
LL N+ T F+ GAG F P + +P+ P QP A + T QA +
Sbjct: 444 RLLVRNQSTTFIVGAGKFGGKKDPIA----GVVPLQ--PAPNRQPDATVQYTTSEDQAAL 497
Query: 123 YRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFL 182
YRLSGD NPLH DP +A AGF PILHGLCT+GF+VRA++ +P + K + RF
Sbjct: 498 YRLSGDKNPLHIDPQMALLAGFKTPILHGLCTLGFSVRAVLAQFADNNPALFKAVKVRFS 557
Query: 183 LHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALSG-FVDV 222
V PG+TL ++W QG R+ ++ V E + +SG +VD+
Sbjct: 558 GPVIPGQTLRVDLWKQGTRINFRTVVVETGKEVISGAYVDL 598
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 119/212 (56%), Gaps = 26/212 (12%)
Query: 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMT 71
++LHG+QY+ELYKP P + ++ EA +A + ++ I Y+ EL+C N+ +
Sbjct: 61 MVLHGEQYLELYKPLPRAGKLKCEAVVADV-------LVVIIMDVYSYSEKELICHNQFS 113
Query: 72 AFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNP 131
FL + V+V IP P AV D T +QA +YRLSGD+NP
Sbjct: 114 LFLS-----------------DKVKVAVA-IPNRPPDAVLTDTTSLNQAALYRLSGDWNP 155
Query: 132 LHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETL 191
LH DP A AGF +PILHGLCT GF+ R +++ D + K + +RF VYPG+TL
Sbjct: 156 LHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTL 215
Query: 192 VTEMWLQGLRVIYQVKVKERNRSALS-GFVDV 222
TEMW +G R+ +Q KV+E +S +VD+
Sbjct: 216 QTEMWKEGNRIHFQTKVQETGDIVISNAYVDL 247
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 123/214 (57%), Gaps = 17/214 (7%)
Query: 9 DPRLLLHGQQYMELYKPF-PSSASIRNEACIAGLHDKGKAAILEIETK--SYNAESGELL 65
+P ++LHG+Q +E+ +P PS ++ + + +DKGK ++E +T+ N +L+
Sbjct: 119 NPAMILHGEQSVEILRPLDPSGGTLTGKTKVISFYDKGKGTLMETQTQFEDGNGPVAKLI 178
Query: 66 CMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRL 125
+F+RG G+ K + +P V +IPK QP E T P QA VYRL
Sbjct: 179 S----GSFIRGLTGYEG--------KGRKLPARV-QIPKRQPDFNDEFKTSPHQAQVYRL 225
Query: 126 SGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHV 185
SGDYN LH DP +AK+ GF +PILHGLC+MG A RA+ K C GD K+I RF
Sbjct: 226 SGDYNSLHIDPEIAKSVGFKQPILHGLCSMGVASRALFKQFCGGDVARFKSIRVRFSSPC 285
Query: 186 YPGETLVTEMWLQGL-RVIYQVKVKERNRSALSG 218
+PGET+ T MW +G +V++Q VKER + G
Sbjct: 286 FPGETIQTRMWQEGSGKVLFQAVVKERGAVIVDG 319
>pdb|3KHP|A Chain A, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|B Chain B, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|C Chain C, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|D Chain D, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
Length = 311
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 108/204 (52%), Gaps = 13/204 (6%)
Query: 9 DPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKG--KAAILEIETKSYNAESGELLC 66
+P LLHG Q + L+ P P++ + +A + DKG K AI+ + + + ESG L+
Sbjct: 95 NPAALLHGSQGIRLHAPLPAAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDPESGSLVA 154
Query: 67 MNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLS 126
T LR + + P + P P A + T+ QAL+YRLS
Sbjct: 155 ETLTTLVLR-----GQGGFGGARGERPAAP----EFPDRHPDARIDMPTREDQALIYRLS 205
Query: 127 GDYNPLHSDPMVA-KAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHV 185
GD NPLHSDP A + AGF +PILHGLCT G A RA++ + G + +I +RF V
Sbjct: 206 GDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANITSIAARFTKPV 265
Query: 186 YPGETLVTEMW-LQGLRVIYQVKV 208
+PGETL T +W + R +++ +V
Sbjct: 266 FPGETLSTVIWRTEPGRAVFRTEV 289
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 105/212 (49%), Gaps = 14/212 (6%)
Query: 9 DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCM 67
+P LLLHG+ Y++++ P P+ I+ KG ++ +KS + +SGEL+
Sbjct: 67 NPXLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKSGELIYS 126
Query: 68 NRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSG 127
N T F+R + Y+ + PK P + A +YRLSG
Sbjct: 127 NEATYFIRNC-----QADNKVYADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSG 181
Query: 128 DYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPNMVKNIFSRFLLHVY 186
D NPLH DP AK A F +PILHG CT G + +A+I KF G N +K +RF V+
Sbjct: 182 DRNPLHIDPNFAKGAKFPKPILHGXCTYGLSAKALIDKF---GXFNEIK---ARFTGIVF 235
Query: 187 PGETLVTEMWLQGLR-VIYQVKVKERNRSALS 217
PGETL W + +++Q V +R A++
Sbjct: 236 PGETLRVLAWKESDDTIVFQTHVVDRGTIAIN 267
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 103/212 (48%), Gaps = 14/212 (6%)
Query: 9 DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCM 67
+P LLLHG+ Y++++ P P+ I+ KG ++ +KS + +SGEL+
Sbjct: 67 NPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKSGELIYS 126
Query: 68 NRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSG 127
N T F+R + Y+ + PK P + A +YRLSG
Sbjct: 127 NEATYFIRNCQADNKV-----YADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSG 181
Query: 128 DYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPNMVKNIFSRFLLHVY 186
D NPL DP AK A F +PILHG+CT G + +A+I KF M I +RF V+
Sbjct: 182 DRNPLQIDPNFAKGAKFPKPILHGMCTYGLSAKALIDKF------GMFNEIKARFTGIVF 235
Query: 187 PGETLVTEMWLQG-LRVIYQVKVKERNRSALS 217
PGETL W + +++Q V +R A++
Sbjct: 236 PGETLRVLAWKESDDTIVFQTHVVDRGTIAIN 267
>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
Length = 134
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 125 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLH 184
LS D+NPLH DP A F RPI+HG+ + ++ G ++ F L
Sbjct: 29 LSEDFNPLHLDPAFAATTAFERPIVHGML-LASLFSGLLGQQLPGKGSIYLGQSLSFKLP 87
Query: 185 VYPGETLVTEMWLQGLR 201
V+ G+ + E+ + LR
Sbjct: 88 VFVGDEVTAEVEVTALR 104
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 107 PFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK-F 165
P AV + YT + R+SGD NP+H A A I HG+ + +VRA+I+ +
Sbjct: 1538 PIAVLDSYTPSTNEPYARVSGDLNPIHVSRHFASYANLPGTITHGMFSSA-SVRALIENW 1596
Query: 166 ICRGDPNMVKNIFSRFLLHVYPGETLVTEM----WLQGLRVIYQVKVKERNRSALSGFVD 221
+ V+ +F+ V P L T + + G ++I E + L+G +
Sbjct: 1597 AADSVSSRVRGYTCQFVDMVLPNTALKTSIQHVGMINGRKLIKFETRNEDDVVVLTGEAE 1656
Query: 222 VHRLASSL 229
+ + ++
Sbjct: 1657 IEQPVTTF 1664
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 125 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIF---SRF 181
+SGD+NP+H+D A AG PI+HG+ A + G P + +RF
Sbjct: 1242 VSGDHNPIHTDRAAALLAGLEGPIVHGMWLSAAAQHVVTA--TDGKPVPPAKLIGWTARF 1299
Query: 182 LLHVYPGETL 191
L V PG+ +
Sbjct: 1300 LGMVKPGDQV 1309
>pdb|3IR3|A Chain A, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
pdb|3IR3|B Chain B, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
Length = 148
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 114 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNM 173
+TQ A L+GD NPLH + AK F I+HG+ G + A++ G +
Sbjct: 28 FTQTDVATFSELTGDVNPLHLNEDFAKHTKFGNTIVHGVLINGL-ISALLGTKMPGPGCV 86
Query: 174 VKNIFSRFLLHVYPGETLVTEMWLQGLR-----VIYQVKVKERNRSALSGFVDV 222
+ F +Y GE ++ ++ L+ + V E ++ + G+V V
Sbjct: 87 FLSQEISFPAPLYIGEVVLASAEVKKLKRFIAIIAVSCSVIESKKTVMEGWVKV 140
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 124 RLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK-FICRGDPNMVKNIFSRFL 182
R+SGDYNP+H + + A I HG+ T AVR++++ + + V++ +
Sbjct: 1564 RVSGDYNPIHVSRVFSSYANLPGTITHGMYTSA-AVRSLVETWAAENNIGRVRSYHVNMV 1622
Query: 183 LHVYPGETLVTEMWLQGL---RVIYQVKV--KERNRSALSGFVDVHR 224
V P + + ++ G+ R I +V K+ + S L G +V +
Sbjct: 1623 GMVLPNDAITVKLEHVGMIAGRKIIKVDARNKDTDESVLQGEAEVEQ 1669
>pdb|1Q6W|A Chain A, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|B Chain B, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|C Chain C, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|D Chain D, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|E Chain E, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|F Chain F, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|G Chain G, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|H Chain H, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|I Chain I, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|J Chain J, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|K Chain K, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|L Chain L, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
Length = 161
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 125 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRG-DPNMVKNIFS---- 179
L+ D+ PLH+D AK F +PI G + A+ + + I D + V F
Sbjct: 42 LTADFFPLHTDVEFAKKTIFGKPIAQGXLVLSIALGXVDQVILSNYDVSSVIAFFGIKDV 101
Query: 180 RFLLHVYPGETL 191
RFL V+ G+T+
Sbjct: 102 RFLRPVFIGDTI 113
>pdb|2B3M|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|B Chain B, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
Length = 159
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 104 KSQPFAVFEDYTQPSQALVYR-------------LSGDYNPLHSDPMVAKAAGFSRPILH 150
K +PF FE + Y +SGD NP+H D A F ++H
Sbjct: 25 KVKPFEKFEGELKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDEDFASKTRFGGRVVH 84
Query: 151 GLCTMGFAVRAIIKF 165
G+ T A+ +
Sbjct: 85 GMLTTSLVSAAVARL 99
>pdb|2C2I|A Chain A, Structure And Function Of Rv0130, A Conserved Hypothetical
Protein From M.Tuberculosis
pdb|2C2I|B Chain B, Structure And Function Of Rv0130, A Conserved Hypothetical
Protein From M.Tuberculosis
Length = 151
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 115 TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGF 157
TQ L +GD+ +H DP A A F I HG T+
Sbjct: 27 TQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFXTLAL 69
>pdb|4E3E|A Chain A, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
pdb|4E3E|B Chain B, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
Length = 352
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 29/140 (20%)
Query: 104 KSQPFAVFEDY--------------TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPIL 149
K+ P FED+ T+ AL L G L S A++ G R +
Sbjct: 4 KTNPGNFFEDFRLGQTIVHATPRTITEGDVALYTSLYGSRFALTSSTPFAQSLGLERAPI 63
Query: 150 HGLCTMGFAVRAIIKFICRGDPNMVKNIF---SRFLLHVYPGETLVTEMWLQGLRVIYQV 206
L + I N + N+ RF VYPG+TL T + GLR
Sbjct: 64 DSLLVFHIVFGKTVPDISL---NAIANLGYAGGRFGAVVYPGDTLSTTSKVIGLR----- 115
Query: 207 KVKERNRSALSGFVDVHRLA 226
+N+ +G V VH +
Sbjct: 116 ----QNKDGKTGVVYVHSVG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,664,808
Number of Sequences: 62578
Number of extensions: 256026
Number of successful extensions: 466
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 16
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)