Query 027032
Match_columns 229
No_of_seqs 171 out of 1833
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02864 enoyl-CoA hydratase 100.0 1.7E-46 3.6E-51 319.0 32.0 223 7-229 88-310 (310)
2 KOG1206 Peroxisomal multifunct 100.0 3E-34 6.6E-39 225.9 4.8 212 5-227 58-270 (272)
3 cd03448 HDE_HSD HDE_HSD The R 99.9 1.6E-26 3.4E-31 171.4 15.6 120 103-222 1-121 (122)
4 cd03447 FAS_MaoC FAS_MaoC, the 99.9 4.3E-26 9.3E-31 170.1 16.9 117 109-225 5-126 (126)
5 cd03453 SAV4209_like SAV4209_l 99.9 1.1E-23 2.4E-28 157.5 15.0 109 113-223 11-127 (127)
6 cd03455 SAV4209 SAV4209 is a S 99.9 1.1E-23 2.4E-28 156.6 14.4 108 114-223 11-123 (123)
7 COG3777 Uncharacterized conser 99.9 1.4E-22 3.1E-27 161.2 9.4 194 5-221 70-272 (273)
8 cd03449 R_hydratase (R)-hydrat 99.9 3.6E-21 7.8E-26 143.5 15.0 110 113-223 12-127 (128)
9 PRK13693 (3R)-hydroxyacyl-ACP 99.9 4.8E-21 1E-25 145.7 15.1 109 113-223 21-140 (142)
10 cd03452 MaoC_C MaoC_C The C-t 99.9 1.1E-21 2.3E-26 149.5 11.1 108 113-223 17-137 (142)
11 cd03441 R_hydratase_like (R)-h 99.9 5.8E-21 1.2E-25 142.1 14.6 110 113-222 9-126 (127)
12 COG2030 MaoC Acyl dehydratase 99.9 6.5E-21 1.4E-25 147.7 13.2 112 112-223 32-153 (159)
13 PF01575 MaoC_dehydratas: MaoC 99.9 2E-21 4.4E-26 144.3 8.0 87 113-199 17-103 (122)
14 cd03446 MaoC_like MoaC_like 99.8 3.9E-20 8.4E-25 140.4 13.4 109 113-223 17-139 (140)
15 cd03451 FkbR2 FkbR2 is a Strep 99.8 2.8E-20 6.1E-25 142.1 12.3 113 113-225 20-143 (146)
16 PRK08190 bifunctional enoyl-Co 99.8 2.3E-19 4.9E-24 160.9 15.6 114 113-227 25-144 (466)
17 cd03454 YdeM YdeM is a Bacillu 99.8 4.5E-19 9.8E-24 134.6 12.5 109 114-223 17-138 (140)
18 cd03450 NodN NodN (nodulation 99.8 1.8E-18 3.9E-23 132.5 13.8 108 113-221 23-144 (149)
19 PRK13691 (3R)-hydroxyacyl-ACP 99.8 7.9E-18 1.7E-22 131.1 14.3 110 114-224 20-144 (166)
20 PRK13692 (3R)-hydroxyacyl-ACP 99.8 1.1E-17 2.3E-22 129.5 13.2 111 113-223 19-143 (159)
21 TIGR02278 PaaN-DH phenylacetic 99.7 6.1E-17 1.3E-21 150.8 12.0 107 113-222 540-659 (663)
22 PRK11563 bifunctional aldehyde 99.7 1.5E-16 3.3E-21 148.8 11.9 109 113-222 552-671 (675)
23 PF13452 MaoC_dehydrat_N: N-te 99.4 3.4E-12 7.3E-17 95.7 9.3 64 4-68 66-132 (132)
24 PRK13691 (3R)-hydroxyacyl-ACP 99.1 1.4E-09 3E-14 84.8 11.9 72 6-78 77-148 (166)
25 PF13452 MaoC_dehydrat_N: N-te 99.1 2.2E-10 4.8E-15 85.8 5.8 103 114-217 14-131 (132)
26 PRK13692 (3R)-hydroxyacyl-ACP 99.0 7.6E-09 1.6E-13 80.1 11.8 70 7-77 78-147 (159)
27 PRK04424 fatty acid biosynthes 98.6 1.2E-06 2.7E-11 69.4 11.7 79 145-224 100-181 (185)
28 cd01288 FabZ FabZ is a 17kD be 98.4 6.8E-06 1.5E-10 61.1 12.0 92 132-223 28-129 (131)
29 PRK00006 fabZ (3R)-hydroxymyri 98.4 5.8E-06 1.3E-10 63.0 11.6 90 135-224 46-144 (147)
30 cd03452 MaoC_C MaoC_C The C-t 98.3 6.7E-06 1.4E-10 62.4 10.3 62 15-77 78-141 (142)
31 cd03454 YdeM YdeM is a Bacillu 98.2 9.7E-06 2.1E-10 61.2 9.0 63 12-75 75-140 (140)
32 cd03446 MaoC_like MoaC_like 98.2 1.7E-05 3.6E-10 59.8 9.5 60 13-73 78-139 (140)
33 cd03451 FkbR2 FkbR2 is a Strep 98.1 2.4E-05 5.1E-10 59.3 9.3 62 15-77 81-145 (146)
34 PRK13188 bifunctional UDP-3-O- 98.1 8.4E-05 1.8E-09 66.6 12.8 92 132-223 356-458 (464)
35 cd03450 NodN NodN (nodulation 98.1 4.9E-05 1.1E-09 58.2 9.8 62 13-74 85-147 (149)
36 TIGR02286 PaaD phenylacetic ac 98.0 0.00033 7.1E-09 50.9 12.2 78 147-224 31-113 (114)
37 cd03441 R_hydratase_like (R)-h 97.9 0.00011 2.4E-09 53.9 9.7 60 11-71 66-125 (127)
38 cd03449 R_hydratase (R)-hydrat 97.9 0.00013 2.9E-09 53.7 10.0 60 11-73 68-127 (128)
39 TIGR01750 fabZ beta-hydroxyacy 97.9 0.00034 7.3E-09 52.7 11.4 78 145-222 49-138 (140)
40 cd03453 SAV4209_like SAV4209_l 97.9 0.00018 4E-09 53.3 9.6 54 17-71 72-125 (127)
41 cd03455 SAV4209 SAV4209 is a S 97.8 0.00025 5.3E-09 52.3 9.2 56 13-72 67-122 (123)
42 cd03440 hot_dog The hotdog fol 97.7 0.0016 3.5E-08 43.2 11.5 78 145-222 14-99 (100)
43 cd00493 FabA_FabZ FabA/Z, beta 97.6 0.002 4.3E-08 47.5 12.1 77 146-222 41-129 (131)
44 PRK08190 bifunctional enoyl-Co 97.6 0.00066 1.4E-08 61.5 10.6 64 11-77 81-144 (466)
45 PF03061 4HBT: Thioesterase su 97.5 0.0023 5.1E-08 42.6 10.2 68 148-215 3-78 (79)
46 COG2030 MaoC Acyl dehydratase 97.5 0.00083 1.8E-08 52.0 8.9 64 12-76 93-156 (159)
47 PLN02864 enoyl-CoA hydratase 97.4 0.002 4.3E-08 55.3 10.6 108 114-221 25-152 (310)
48 cd03443 PaaI_thioesterase PaaI 97.2 0.011 2.5E-07 42.1 11.5 75 148-223 30-112 (113)
49 TIGR02278 PaaN-DH phenylacetic 97.1 0.0019 4.2E-08 60.9 8.3 59 15-74 601-661 (663)
50 cd03445 Thioesterase_II_repeat 97.0 0.022 4.7E-07 40.0 11.0 77 145-223 14-93 (94)
51 TIGR00369 unchar_dom_1 unchara 97.0 0.018 3.9E-07 41.8 10.8 74 148-222 34-115 (117)
52 PRK11563 bifunctional aldehyde 96.9 0.0045 9.7E-08 58.7 8.3 58 17-75 615-674 (675)
53 cd00586 4HBT 4-hydroxybenzoyl- 96.9 0.039 8.5E-07 38.4 11.5 76 148-223 17-107 (110)
54 cd03447 FAS_MaoC FAS_MaoC, the 96.8 0.015 3.2E-07 43.1 9.2 52 16-72 71-123 (126)
55 COG2050 PaaI HGG motif-contain 96.8 0.039 8.5E-07 41.6 11.5 82 145-227 49-139 (141)
56 cd00586 4HBT 4-hydroxybenzoyl- 96.8 0.027 5.8E-07 39.3 10.0 58 12-74 51-108 (110)
57 PRK00006 fabZ (3R)-hydroxymyri 96.7 0.028 6.1E-07 42.5 10.0 58 13-76 89-146 (147)
58 cd03442 BFIT_BACH Brown fat-in 96.6 0.075 1.6E-06 38.3 11.3 78 148-225 24-113 (123)
59 cd03440 hot_dog The hotdog fol 96.5 0.041 8.9E-07 36.1 9.1 57 11-72 43-99 (100)
60 COG0764 FabA 3-hydroxymyristoy 96.5 0.085 1.8E-06 40.2 11.5 80 146-225 55-144 (147)
61 TIGR02286 PaaD phenylacetic ac 96.5 0.044 9.6E-07 39.6 9.6 56 13-73 57-112 (114)
62 cd01289 FabA_like Domain of un 96.4 0.097 2.1E-06 39.4 11.4 54 172-225 78-137 (138)
63 PRK11688 hypothetical protein; 96.4 0.09 1.9E-06 40.3 11.3 77 146-223 55-152 (154)
64 PF13622 4HBT_3: Thioesterase- 96.4 0.095 2.1E-06 43.2 12.2 79 146-226 9-90 (255)
65 PF07977 FabA: FabA-like domai 96.3 0.039 8.5E-07 41.3 8.8 74 145-218 46-137 (138)
66 PRK10800 acyl-CoA thioesterase 96.2 0.11 2.5E-06 38.2 10.9 62 11-77 52-113 (130)
67 PLN02322 acyl-CoA thioesterase 96.2 0.19 4.1E-06 38.6 12.0 78 147-224 43-133 (154)
68 PF03061 4HBT: Thioesterase su 96.2 0.041 8.9E-07 36.4 7.6 50 12-66 30-79 (79)
69 PLN02647 acyl-CoA thioesterase 96.2 0.94 2E-05 40.7 20.5 58 18-77 150-211 (437)
70 COG5496 Predicted thioesterase 96.1 0.28 6.1E-06 36.1 11.8 87 132-220 16-109 (130)
71 PRK10293 acyl-CoA esterase; Pr 96.0 0.22 4.7E-06 37.4 11.5 76 147-223 51-134 (136)
72 cd00556 Thioesterase_II Thioes 96.0 0.14 3E-06 35.5 10.0 77 146-222 14-97 (99)
73 PRK10800 acyl-CoA thioesterase 96.0 0.087 1.9E-06 38.8 9.2 52 172-223 54-109 (130)
74 TIGR01749 fabA beta-hydroxyacy 95.9 0.18 4E-06 39.3 11.0 84 145-228 71-168 (169)
75 PRK10254 thioesterase; Provisi 95.9 0.25 5.4E-06 37.2 11.3 76 147-223 51-134 (137)
76 PRK04424 fatty acid biosynthes 95.9 0.073 1.6E-06 42.2 8.8 56 13-74 126-181 (185)
77 PF13279 4HBT_2: Thioesterase- 95.8 0.21 4.5E-06 36.1 10.4 62 12-77 43-106 (121)
78 TIGR00369 unchar_dom_1 unchara 95.8 0.093 2E-06 38.0 8.3 56 12-73 61-116 (117)
79 COG0824 FcbC Predicted thioest 95.7 0.13 2.8E-06 38.6 9.1 53 173-225 58-113 (137)
80 TIGR00189 tesB acyl-CoA thioes 95.6 0.13 2.8E-06 43.0 9.8 76 148-225 22-100 (271)
81 COG1607 Acyl-CoA hydrolase [Li 95.6 0.34 7.4E-06 37.3 11.2 78 149-226 31-120 (157)
82 cd01288 FabZ FabZ is a 17kD be 95.6 0.18 3.8E-06 37.0 9.5 55 14-74 76-130 (131)
83 PRK05174 3-hydroxydecanoyl-(ac 95.5 0.44 9.5E-06 37.3 11.8 84 145-228 74-171 (172)
84 TIGR02799 thio_ybgC tol-pal sy 95.5 0.17 3.7E-06 36.8 9.1 52 173-224 54-108 (126)
85 PLN02370 acyl-ACP thioesterase 95.5 1.7 3.8E-05 38.8 22.0 62 12-77 196-257 (419)
86 cd03442 BFIT_BACH Brown fat-in 95.3 0.3 6.5E-06 35.1 9.8 54 19-76 57-114 (123)
87 PRK11688 hypothetical protein; 95.3 0.23 4.9E-06 38.0 9.4 57 12-74 97-153 (154)
88 cd03443 PaaI_thioesterase PaaI 95.3 0.37 8E-06 34.1 10.1 56 12-73 57-112 (113)
89 PRK10694 acyl-CoA esterase; Pr 95.2 0.8 1.7E-05 34.2 11.8 78 148-225 28-120 (133)
90 cd01287 FabA FabA, beta-hydrox 95.2 0.29 6.2E-06 37.5 9.6 60 12-73 85-145 (150)
91 TIGR02799 thio_ybgC tol-pal sy 95.1 0.57 1.2E-05 34.0 10.9 59 13-77 53-111 (126)
92 TIGR01750 fabZ beta-hydroxyacy 95.1 0.21 4.5E-06 37.4 8.5 56 12-73 84-139 (140)
93 cd01287 FabA FabA, beta-hydrox 95.0 0.69 1.5E-05 35.3 11.3 76 145-220 48-142 (150)
94 PF07977 FabA: FabA-like domai 95.0 0.15 3.2E-06 38.2 7.6 55 12-69 83-138 (138)
95 PRK10526 acyl-CoA thioesterase 94.9 0.28 6.2E-06 41.5 9.7 80 146-227 31-113 (286)
96 COG0824 FcbC Predicted thioest 94.9 0.64 1.4E-05 34.9 10.6 59 13-77 57-115 (137)
97 PF01643 Acyl-ACP_TE: Acyl-ACP 94.9 1.9 4.2E-05 35.9 16.7 61 13-77 61-121 (261)
98 PF12119 DUF3581: Protein of u 94.8 0.13 2.8E-06 41.0 6.7 65 114-194 16-81 (218)
99 TIGR00051 acyl-CoA thioester h 94.5 0.55 1.2E-05 33.4 9.2 59 13-76 49-107 (117)
100 KOG3328 HGG motif-containing t 94.1 0.58 1.3E-05 35.4 8.6 74 148-221 55-136 (148)
101 COG2050 PaaI HGG motif-contain 94.0 0.67 1.5E-05 34.7 9.2 57 15-76 82-138 (141)
102 PF13279 4HBT_2: Thioesterase- 93.9 0.73 1.6E-05 33.2 9.0 51 173-223 45-102 (121)
103 COG1607 Acyl-CoA hydrolase [Li 93.8 0.73 1.6E-05 35.5 8.9 60 18-77 62-121 (157)
104 cd00493 FabA_FabZ FabA/Z, beta 93.8 0.96 2.1E-05 32.9 9.5 52 12-69 75-126 (131)
105 TIGR02447 yiiD_Cterm thioester 93.8 1.4 3.1E-05 33.0 10.5 77 148-224 39-136 (138)
106 PRK10254 thioesterase; Provisi 93.7 1.2 2.5E-05 33.6 9.8 59 12-76 79-137 (137)
107 PRK13188 bifunctional UDP-3-O- 93.4 0.7 1.5E-05 41.9 9.4 57 14-75 404-460 (464)
108 PRK07531 bifunctional 3-hydrox 93.2 0.72 1.6E-05 42.2 9.4 61 12-77 395-455 (495)
109 PF01575 MaoC_dehydratas: MaoC 93.1 0.31 6.7E-06 35.6 5.8 42 12-53 75-116 (122)
110 cd00556 Thioesterase_II Thioes 93.0 0.74 1.6E-05 31.7 7.4 57 12-73 42-98 (99)
111 TIGR00051 acyl-CoA thioester h 92.9 1.3 2.8E-05 31.4 8.7 47 172-218 49-99 (117)
112 PRK10694 acyl-CoA esterase; Pr 92.7 1 2.3E-05 33.6 8.2 60 18-77 60-122 (133)
113 PLN02322 acyl-CoA thioesterase 92.6 1.7 3.6E-05 33.4 9.4 60 12-75 70-134 (154)
114 PRK10293 acyl-CoA esterase; Pr 92.4 2.1 4.5E-05 32.1 9.5 57 12-74 79-135 (136)
115 cd03448 HDE_HSD HDE_HSD The R 90.8 1.3 2.8E-05 32.5 6.8 46 14-68 71-116 (122)
116 TIGR02447 yiiD_Cterm thioester 90.7 1 2.2E-05 33.8 6.3 60 11-75 68-137 (138)
117 COG1946 TesB Acyl-CoA thioeste 90.2 2.2 4.7E-05 36.1 8.3 64 9-77 222-285 (289)
118 PLN02868 acyl-CoA thioesterase 90.2 2.4 5.2E-05 37.9 9.2 79 147-227 158-239 (413)
119 PRK05174 3-hydroxydecanoyl-(ac 89.4 5.4 0.00012 31.2 9.6 58 13-73 105-163 (172)
120 PRK07531 bifunctional 3-hydrox 89.1 3.6 7.7E-05 37.7 9.6 52 173-224 397-452 (495)
121 cd01289 FabA_like Domain of un 87.4 8.4 0.00018 28.7 9.2 59 11-74 77-136 (138)
122 TIGR00189 tesB acyl-CoA thioes 86.8 5.2 0.00011 33.3 8.6 60 11-75 212-271 (271)
123 TIGR01749 fabA beta-hydroxyacy 86.8 6.2 0.00013 30.7 8.4 56 14-72 103-159 (169)
124 PF14539 DUF4442: Domain of un 86.3 3.9 8.5E-05 30.3 6.8 56 14-73 76-131 (132)
125 PRK10526 acyl-CoA thioesterase 86.3 4.6 9.9E-05 34.2 8.1 59 13-76 226-284 (286)
126 PLN02647 acyl-CoA thioesterase 86.3 6.3 0.00014 35.6 9.2 61 17-77 338-403 (437)
127 PRK13693 (3R)-hydroxyacyl-ACP 86.2 8.9 0.00019 28.8 8.8 44 17-63 82-130 (142)
128 COG0764 FabA 3-hydroxymyristoy 84.5 14 0.00031 28.1 9.2 59 11-74 85-143 (147)
129 cd03444 Thioesterase_II_repeat 83.0 8.9 0.00019 27.1 7.2 58 11-73 46-103 (104)
130 KOG3328 HGG motif-containing t 82.4 16 0.00035 27.7 8.5 63 10-77 79-142 (148)
131 PF02551 Acyl_CoA_thio: Acyl-C 79.0 12 0.00025 28.0 6.7 52 15-71 77-129 (131)
132 PF03756 AfsA: A-factor biosyn 76.2 28 0.0006 25.5 8.4 50 173-222 73-130 (132)
133 PLN02370 acyl-ACP thioesterase 75.8 29 0.00062 31.2 9.5 50 173-222 198-252 (419)
134 PF10989 DUF2808: Protein of u 71.2 17 0.00036 27.5 6.1 39 175-213 89-132 (146)
135 COG1946 TesB Acyl-CoA thioeste 67.4 40 0.00087 28.6 8.0 79 146-226 31-112 (289)
136 PF14765 PS-DH: Polyketide syn 62.4 71 0.0015 26.4 8.9 58 13-75 230-288 (295)
137 PF03756 AfsA: A-factor biosyn 62.1 59 0.0013 23.7 7.7 59 12-72 71-130 (132)
138 PLN02868 acyl-CoA thioesterase 60.8 29 0.00064 30.9 6.5 56 13-73 357-412 (413)
139 PF09500 YiiD_Cterm: Putative 59.6 75 0.0016 24.1 7.9 50 173-222 77-140 (144)
140 KOG4781 Uncharacterized conser 59.3 33 0.00072 28.1 5.8 66 141-207 137-208 (237)
141 PF13622 4HBT_3: Thioesterase- 59.0 97 0.0021 25.2 9.3 56 14-74 199-255 (255)
142 PF01643 Acyl-ACP_TE: Acyl-ACP 57.4 87 0.0019 25.9 8.5 50 173-222 62-116 (261)
143 PF09500 YiiD_Cterm: Putative 55.0 91 0.002 23.6 8.8 59 11-74 74-142 (144)
144 KOG3016 Acyl-CoA thioesterase 53.8 1.3E+02 0.0028 25.6 8.7 78 148-227 39-119 (294)
145 PF14539 DUF4442: Domain of un 53.5 87 0.0019 23.0 9.9 47 174-222 77-130 (132)
146 PF01835 A2M_N: MG2 domain; I 50.1 58 0.0013 22.3 5.4 40 180-220 5-55 (99)
147 PF10862 FcoT: FcoT-like thioe 37.8 1.9E+02 0.004 22.3 6.9 53 10-63 93-148 (157)
148 PF14765 PS-DH: Polyketide syn 33.9 2.7E+02 0.0058 22.9 10.8 78 144-224 36-126 (295)
149 cd04316 ND_PkAspRS_like_N ND_P 31.2 1.3E+02 0.0027 21.1 4.7 27 26-52 9-35 (108)
150 COG5496 Predicted thioesterase 24.8 2.9E+02 0.0064 20.5 9.2 57 13-75 58-114 (130)
151 COG3884 FatA Acyl-ACP thioeste 22.0 3E+02 0.0065 22.8 5.7 51 174-228 193-245 (250)
152 PF14326 DUF4384: Domain of un 21.9 2.5E+02 0.0054 18.6 5.3 12 187-198 5-16 (83)
153 cd04317 EcAspRS_like_N EcAspRS 21.8 1.2E+02 0.0025 22.3 3.2 28 25-52 10-37 (135)
154 cd07689 Ig2_VCAM-1 Second immu 21.0 1.4E+02 0.0029 21.2 3.1 30 19-48 5-34 (99)
155 PF04775 Bile_Hydr_Trans: Acyl 20.8 3.2E+02 0.0069 19.9 5.3 25 47-73 15-39 (126)
No 1
>PLN02864 enoyl-CoA hydratase
Probab=100.00 E-value=1.7e-46 Score=318.96 Aligned_cols=223 Identities=78% Similarity=1.237 Sum_probs=194.5
Q ss_pred CCCCCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCcCCCCCCCCC
Q 027032 7 RHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQP 86 (229)
Q Consensus 7 ~~~~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~~~~~~~~~p 86 (229)
+||+.++||++|+|++||||+++++|+++++|.++++||+|.++++++++++.++|+++|+.++|+++|+.+++++++.+
T Consensus 88 ~~d~~~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~gg~g~~~~~ 167 (310)
T PLN02864 88 NYDPSLLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGAGGFSNSSQP 167 (310)
T ss_pred CCChhheeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCCCCCCCCCCC
Confidence 68999999999999999999999999999999999999999999999988865689999999999999999877755433
Q ss_pred CCCCccCCCCccccCCCCCCCCEEEeecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHH
Q 027032 87 FSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFI 166 (229)
Q Consensus 87 ~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~ 166 (229)
......+..+....+.|++.|+...+..+..++.+||++|||+||||+|+++|+..||+++|+||||+++++.+++.+++
T Consensus 168 ~~~~~~~~~~~~~~~~p~~~pd~~~~~~t~~~~~~~a~lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~~~~ 247 (310)
T PLN02864 168 FSYSNYPTNQVSAVKIPKSQPDAVFEDQTQPSQALLYRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVIKCF 247 (310)
T ss_pred ccccccccccccccCCCCCCCCeEEeeccChhHHHHHHhhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHHhhh
Confidence 11011111111123456678899888899999999999999999999999999999999999999999999999988887
Q ss_pred ccCCCceeeEEEEEECcCCCCCCEEEEEEEEECcEEEEEEEEccCCeEEEEEEEEEEecCCCC
Q 027032 167 CRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALSGFVDVHRLASSL 229 (229)
Q Consensus 167 ~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~~~~v~~~~~~~~~g~~v~~g~~~~~~~~~~~ 229 (229)
.++++..+.++++||.+||++||+|+++.|.+++.+.|++.+|++|++|++|.+++..+.|||
T Consensus 248 ~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~~~~~v~~~~~~~~~g~~vl~G~a~~~~~~~~~ 310 (310)
T PLN02864 248 CNGDPTAVKTISGRFLLHVYPGETLVTEMWLEGLRVIYQTKVKERNKAVLSGYVDLRHLTSSL 310 (310)
T ss_pred cCCCCceEEEEEEEEcCCccCCCEEEEEEEeCCCEEEEEEEEecCCeEEEEEEEEEecccCCC
Confidence 777778888999999999999999999999888889999888899999999999999999886
No 2
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=100.00 E-value=3e-34 Score=225.91 Aligned_cols=212 Identities=39% Similarity=0.665 Sum_probs=182.8
Q ss_pred CCCCCCCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCcCCCCCCC
Q 027032 5 HNRHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSS 84 (229)
Q Consensus 5 ~~~~~~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~~~~~~~~ 84 (229)
.+++++..++|++|-++...+++.++.+.+.+++.++-+||+|..+....+.++ ++|.++....+..++|+.+.+++++
T Consensus 58 ~d~~~~~~~lhgeqy~e~~~~l~~~g~l~t~~~~~~v~dkg~~a~v~~~~et~d-~~~k~i~~~~~stf~~g~~~~~~k~ 136 (272)
T KOG1206|consen 58 VDNFDYAMLLHGEQYFELCTTLPSNGTLKTLAKVLDVLDKGSGALVVGNFETYD-ETGKLIAYNQGSTFIRGAGVFGGKR 136 (272)
T ss_pred chhHHHHHHHHHHHHHHHHccccccchhhhcceeEEeccCcceeEEEeeeeeec-ccccchhhhcCceeEecccccCccc
Confidence 345788999999999999999999999999999999999999999999999996 8999999999999999988777664
Q ss_pred CCCCCCccCCCCccccCCCCCCCCEEEeecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHH
Q 027032 85 QPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK 164 (229)
Q Consensus 85 ~p~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~ 164 (229)
.+ .+ ..-+...|.+.|++..+.++.+|+..||++|||+||+|+||+.|++.||+.+|+||+|++++..+.+..
T Consensus 137 ~~------~~-~~~av~~p~r~pd~~v~~~ts~DqaAlyrlsgD~NPLHiDPe~A~~agFetpilHGlc~lg~~~riv~a 209 (272)
T KOG1206|consen 137 DG------KR-AKKAVQVPHRDPDAVVERFTSEDQAALYRLSGDHNPLHIDPESALEAGFETPILHGLCTLGFSARIVGA 209 (272)
T ss_pred cc------hh-heeeccCCCcCcchheeecchhhHHHHHHhcCCCCccccCHHHHHhcCCCCchhhhHHHhhhhHHHHHH
Confidence 32 11 011234677889999999999999999999999999999999999999999999999999999999987
Q ss_pred HHccCCCceeeEEEEEECcCCCCCCEEEEEEEEECcEEEEEEEEccCCeEEE-EEEEEEEecCC
Q 027032 165 FICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSAL-SGFVDVHRLAS 227 (229)
Q Consensus 165 ~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~~~~v~~~~~~~~~g~~v~-~g~~~~~~~~~ 227 (229)
.+ +++.+..+++||..||+|||+|.+..|..+.++.|+..+...|++|+ ...+.+++.+|
T Consensus 210 ~~---~~a~y~~~kvrF~spV~pGdtll~~~wK~g~r~~fqt~vv~t~~~v~sna~iDl~~aks 270 (272)
T KOG1206|consen 210 QF---PPAVYKAQKVRFSSPVGPGDTLLVLVWKQGLRITFQTYVVETGKIVISNAVIDLEAAKS 270 (272)
T ss_pred hc---CchhhheeeeeecCCCCCchhHHHHHHhhhceeEEEEEEEEEEEEEeeccEEehhhhcc
Confidence 76 46777899999999999999999999998888888877666788888 44555655544
No 3
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=99.95 E-value=1.6e-26 Score=171.43 Aligned_cols=120 Identities=59% Similarity=0.910 Sum_probs=105.6
Q ss_pred CCCCCCEEEeecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEEC
Q 027032 103 PKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFL 182 (229)
Q Consensus 103 p~~~p~~~~~~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~ 182 (229)
|.++|+++.+..++.++..+|++|||+||||+|+++|+..||+++|+|||++++++.+++..++.++.+..+..+++||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~SgD~nPiH~d~e~A~~~g~~~~iahG~~t~a~~~~~~~~~~~~~~~~~~~~~~~rF~ 80 (122)
T cd03448 1 PDRAPDAVVEIPTSPDQALLYRLSGDYNPLHIDPAFAKAAGFPRPILHGLCTYGFAARAVLEAFADGDPARFKAIKVRFS 80 (122)
T ss_pred CCCCCCEEEEecCCcChHHHHHHhCCCCccccCHHHHHHcCCCCceehhHHHHHHHHHHHHHHhcCCCcceeEEEEEEEc
Confidence 45678999998888888888889999999999999999999999999999999999998888876666777888999999
Q ss_pred cCCCCCCEEEEEEEEECcEEEEEEEEccCCeEEEEE-EEEE
Q 027032 183 LHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALSG-FVDV 222 (229)
Q Consensus 183 ~Pv~~gd~l~~~~~~~~~~v~~~~~~~~~g~~v~~g-~~~~ 222 (229)
+|||+||+|+++++..++.+.|+++++++|++++.| .+++
T Consensus 81 ~PV~~gDtl~~~~~~~~~~v~~~~~~~~~g~~v~~g~~~~~ 121 (122)
T cd03448 81 SPVFPGETLRTEMWKEGNRVIFQTKVVERDVVVLSNGAALL 121 (122)
T ss_pred CCccCCCEEEEEEEEeCCEEEEEEEEccCCcEEEECCEEec
Confidence 999999999999998888888998876788887754 4543
No 4
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=99.95 E-value=4.3e-26 Score=170.14 Aligned_cols=117 Identities=24% Similarity=0.334 Sum_probs=100.5
Q ss_pred EEEeecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCC
Q 027032 109 AVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPG 188 (229)
Q Consensus 109 ~~~~~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~g 188 (229)
+.....++.|+..|+.+|||+||||+|+++|+..||+++|+|||++++++.+++..++..+++..+.++++||++||++|
T Consensus 5 ~~~~~~t~~d~~~fa~lsGD~nPiH~D~~~A~~~g~~~~iahG~l~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~PV~~g 84 (126)
T cd03447 5 ASLTITAPASNEPYARVSGDFNPIHVSRVFASYAGLPGTITHGMYTSAAVRALVETWAADNDRSRVRSFTASFVGMVLPN 84 (126)
T ss_pred ceEEEEChHHHHHHHHHhCCCCccCCCHHHHHHcCCCCCeechhHHHHHHHHHHHHhccCCCcceEEEEEEEEcccCcCC
Confidence 34556889999999999999999999999999999999999999999999998877654446667788999999999999
Q ss_pred CEEEEEEEEE---CcEEEEEEEE-ccC-CeEEEEEEEEEEec
Q 027032 189 ETLVTEMWLQ---GLRVIYQVKV-KER-NRSALSGFVDVHRL 225 (229)
Q Consensus 189 d~l~~~~~~~---~~~v~~~~~~-~~~-g~~v~~g~~~~~~~ 225 (229)
|+|++++++. .+.+.+++++ ||+ |++|++|++++.++
T Consensus 85 dtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g~~~v~~p 126 (126)
T cd03447 85 DELEVRLEHVGMVDGRKVIKVEARNEETGELVLRGEAEVEQP 126 (126)
T ss_pred CEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEEEEEEeCC
Confidence 9999998873 3555666663 788 99999999998864
No 5
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.92 E-value=1.1e-23 Score=157.49 Aligned_cols=109 Identities=27% Similarity=0.332 Sum_probs=95.5
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEE
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLV 192 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~ 192 (229)
..+..++..|++++||+||||+|+++|+..||+++|+||+++++++.+++..++ ++++.+.++++||++|||+||+|+
T Consensus 11 ~vt~~~i~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~~~~~~~~~~~~--~~~~~i~~~~~rf~~Pv~~Gdtl~ 88 (127)
T cd03453 11 PVSRADLVRYAGASGDFNPIHYDEDFAKKVGLPGVIAHGMLTMGLLGRLVTDWV--GDPGRVVSFGVRFTKPVPVPDTLT 88 (127)
T ss_pred ecCHHHHHHHHHhhcCCCccccCHHHHHHcCCCCcEecHHHHHHHHHHHHHHHc--CCccceEEEEEEECCcCcCCCEEE
Confidence 467889999999999999999999999999999999999999999999888875 346677889999999999999999
Q ss_pred EEEEEE-----C--cEEEEEEE-EccCCeEEEEEEEEEE
Q 027032 193 TEMWLQ-----G--LRVIYQVK-VKERNRSALSGFVDVH 223 (229)
Q Consensus 193 ~~~~~~-----~--~~v~~~~~-~~~~g~~v~~g~~~~~ 223 (229)
+++++. + +.+.++++ .||+|+++++|++++.
T Consensus 89 ~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v~~g~a~v~ 127 (127)
T cd03453 89 CTGIVVEKTVADGEDALTVTVDATDQAGGKKVLGRAIVA 127 (127)
T ss_pred EEEEEEEEEecCCCcEEEEEEEEEEcCCCEEEEEEEEEC
Confidence 998762 1 46677777 4999999999999873
No 6
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=99.91 E-value=1.1e-23 Score=156.61 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=94.9
Q ss_pred cChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEE
Q 027032 114 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVT 193 (229)
Q Consensus 114 ~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~ 193 (229)
.++.++..|+++|||+||||+|+++|+..||+++|+||+++++++.+++.+++ +++..+.++++||.+||++||+|++
T Consensus 11 vt~~~i~~fa~~s~D~~piH~D~~~A~~~g~~~~ia~G~~~~~~~~~~~~~~~--~~~~~~~~~~~rf~~pv~~Gdtl~~ 88 (123)
T cd03455 11 PDPTLLFRYSAATRDFHRIHHDRDYARAVGYPDLYVNGPTLAGLVIRYVTDWA--GPDARVKSFAFRLGAPLYAGDTLRF 88 (123)
T ss_pred CCHHHHHHHHhhcCCCCcccCCHHHHHhcCCCceEEEHHHHHHHHHHHHHHcc--CCcceEEEEEEEeeccccCCCEEEE
Confidence 67888999999999999999999999999999999999999999999888775 3456778899999999999999999
Q ss_pred EEEEEC---c-EEEEEEEE-ccCCeEEEEEEEEEE
Q 027032 194 EMWLQG---L-RVIYQVKV-KERNRSALSGFVDVH 223 (229)
Q Consensus 194 ~~~~~~---~-~v~~~~~~-~~~g~~v~~g~~~~~ 223 (229)
++++.+ + .+.+++++ ||+|+++++|++++.
T Consensus 89 ~~~v~~~~~~~~v~~~~~~~nq~G~~v~~g~a~v~ 123 (123)
T cd03455 89 GGRVTAKRDDEVVTVELWARNSEGDHVMAGTATVA 123 (123)
T ss_pred EEEEEeeccCcEEEEEEEEEcCCCCEEEeEEEEEC
Confidence 998732 2 56677764 899999999999873
No 7
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=1.4e-22 Score=161.16 Aligned_cols=194 Identities=19% Similarity=0.216 Sum_probs=145.7
Q ss_pred CCCCCCCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEc-C-Ce--EEEEEEEEEEECCCCcEEEEEEEEEEEeCcCCC
Q 027032 5 HNRHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDK-G-KA--AILEIETKSYNAESGELLCMNRMTAFLRGAGGF 80 (229)
Q Consensus 5 ~~~~~~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~-g-~g--~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~~~~ 80 (229)
.|++++.+.++++.+++||+||..|++.+|..+|..+++| | .| .+|++. +.+. +.|+++.+++.+++|+++..
T Consensus 70 lpp~~~~RRmWa~G~l~f~~pl~lgqe~t~~e~Iq~i~ek~g~~g~ltfvT~~-h~~~-~~~~l~l~Err~ivY~n~~~- 146 (273)
T COG3777 70 LPPLRYRRRMWAGGELVFHLPLRLGQEYTCHETIQYIEEKHGRSGELTFVTVP-HVYS-SPGQLCLFERRTIVYTNAPA- 146 (273)
T ss_pred CCCcchhhhhhccceEEEecceecCceeehhHHHHHHHHhcccccceeEEecc-ceec-cCcceeeeeeeeEEEecCCC-
Confidence 3567889999999999999999999999999999999997 3 24 577755 4454 78999999999999998741
Q ss_pred CCCCCCCCCCccCCCCccccCCCCCCCCEEE-eec--ChhhHHHHHhhhCCCCCCCCCHHHHHh-CCCCCceechhHHHH
Q 027032 81 SNSSQPFSYSKYQTIPVSVVKIPKSQPFAVF-EDY--TQPSQALVYRLSGDYNPLHSDPMVAKA-AGFSRPILHGLCTMG 156 (229)
Q Consensus 81 ~~~~~p~~~~~~~~~~~~~~~~p~~~p~~~~-~~~--~~~~~~~~~~~sgd~npiH~d~~~A~~-~G~~~~i~hG~~~~~ 156 (229)
..|. .+.....|. ..+ ..+ ++.++.+|.+++.|.|.||||..||+. .||+++|+||++...
T Consensus 147 ---s~p~--------~~~s~~~p~----~~w~~~~tptpvllfrYsaltfN~HrIHyD~~Yat~vEgYpgLVvhGPl~at 211 (273)
T COG3777 147 ---SKPA--------VKMSVAEPN----GKWLKNFTPTPVLLFRYSALTFNGHRIHYDAPYATYVEGYPGLVVHGPLIAT 211 (273)
T ss_pred ---CCcc--------ccCCCCCCC----CchhhcCCCCchheeehhhhccCceeeeccCcceeeccCCCCceecchHHHH
Confidence 1110 000112222 111 122 334445778999999999999999985 899999999999999
Q ss_pred HHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEEEC-cEEEEEEEEccCCeEEEEEEEE
Q 027032 157 FAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQG-LRVIYQVKVKERNRSALSGFVD 221 (229)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~~-~~v~~~~~~~~~g~~v~~g~~~ 221 (229)
++.+++.... +..++++++|-.+|+|+++++++.....+ +.++... .+.+|.+.|.|.+.
T Consensus 212 lll~~~~~~~----pq~~~Rf~fR~L~p~f~~~~lti~~~l~~~g~~~~w~-~~~~~pv~mrarV~ 272 (273)
T COG3777 212 LLLRAFQPFL----PQPIRRFRFRNLSPAFPNETLTICGSLSGSGGAELWT-IRGDGPVAMRARVF 272 (273)
T ss_pred HHHHHhhhhc----cccchheeccccccccCCCCeeEeeEecCCCceEEEE-ecCCcchhheeeec
Confidence 9998887653 34478999999999999999999988755 3343221 35667666777653
No 8
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=99.87 E-value=3.6e-21 Score=143.54 Aligned_cols=110 Identities=25% Similarity=0.363 Sum_probs=93.6
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEE
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLV 192 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~ 192 (229)
..+..++..|++++||+||||+|+++|+..||+++|+||+++++++.+++..++ +++.......+++|.+|+++||+|+
T Consensus 12 tv~~~~~~~fa~~~gd~npiH~D~~~A~~~g~~~~i~~g~~~~~~~~~~~~~~~-~g~~~~~~~~~~~f~~Pv~~gd~l~ 90 (128)
T cd03449 12 TITEEDVELFAELSGDFNPIHLDEEYAKKTRFGGRIAHGMLTASLISAVLGTLL-PGPGTIYLSQSLRFLRPVFIGDTVT 90 (128)
T ss_pred EEcHHHHHHHHHHhCCCCCccCCHHHHhhCCCCCceecHHHHHHHHHHHHhccC-CCceEEEEEEEEEECCCccCCCEEE
Confidence 367888899999999999999999999999999999999999999988776653 4444455678999999999999999
Q ss_pred EEEEEE---C--cEEEEEEEE-ccCCeEEEEEEEEEE
Q 027032 193 TEMWLQ---G--LRVIYQVKV-KERNRSALSGFVDVH 223 (229)
Q Consensus 193 ~~~~~~---~--~~v~~~~~~-~~~g~~v~~g~~~~~ 223 (229)
+++++. + +.+.+++++ |++|+++++|++++.
T Consensus 91 ~~~~v~~~~~~~~~v~~~~~~~~~~g~~v~~g~~~~~ 127 (128)
T cd03449 91 ATVTVTEKREDKKRVTLETVCTNQNGEVVIEGEAVVL 127 (128)
T ss_pred EEEEEEEEecCCCEEEEEEEEEeCCCCEEEEEEEEEe
Confidence 998862 3 567777764 788999999998874
No 9
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=99.87 E-value=4.8e-21 Score=145.74 Aligned_cols=109 Identities=25% Similarity=0.343 Sum_probs=87.8
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCC-C--
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPG-E-- 189 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~g-d-- 189 (229)
..++.|+..|+.+|||+||||+|+++|+..||+++|+|||++++++.+++.+|+ +++..+.++++||++|||+| |
T Consensus 21 tvt~~di~~FA~~sgD~nPiH~D~~~A~~~g~~~~iahG~~~~a~~~~~~~~~~--~~~~~~~~~~~rF~~pv~~g~D~~ 98 (142)
T PRK13693 21 PLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGLGGGYVTSWV--GDPGAVTEYNVRFTAVVPVPNDGK 98 (142)
T ss_pred eeCHHHHHHHHHHhCCCCccccCHHHHHhcCCCCcEecHHHHHHHHHHHHHHhc--CCCcceEEEEEEecccEECCCCcc
Confidence 367889999999999999999999999999999999999999999999888775 34556678999999999964 4
Q ss_pred --EEEEEEEEE-----CcEEEEEEEEccCCeE-EEEEEEEEE
Q 027032 190 --TLVTEMWLQ-----GLRVIYQVKVKERNRS-ALSGFVDVH 223 (229)
Q Consensus 190 --~l~~~~~~~-----~~~v~~~~~~~~~g~~-v~~g~~~~~ 223 (229)
++++.+++. ++.+.+++++.++|+. +..|.+++.
T Consensus 99 ~~~l~~~~~V~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 140 (142)
T PRK13693 99 GAELVFNGRVKSVDPESKSVTIALTATTGGKKIFGRAIASAK 140 (142)
T ss_pred ceEEEEEEEEEEeccCCcEEEEEEEEEECCcEEEEEEEEEEE
Confidence 788777662 2467788776444444 446666654
No 10
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=99.87 E-value=1.1e-21 Score=149.53 Aligned_cols=108 Identities=22% Similarity=0.214 Sum_probs=89.3
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCcee---eEEEEEECcCCCCCC
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMV---KNIFSRFLLHVYPGE 189 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~rf~~Pv~~gd 189 (229)
..+..++..|+.++||+||||+|+++|+..||+++|+||+++++++.+++..+. ++..+ ...++||++||++||
T Consensus 17 tvt~~~i~~Fa~~tgD~nPiH~D~e~A~~~~fg~~ia~G~l~~s~~~~l~~~~~---~~~~~~~~g~~~~rf~~PV~~GD 93 (142)
T cd03452 17 TVTEADIVNFACLTGDHFYAHMDEIAAKASFFGKRVAHGYFVLSAAAGLFVDPA---PGPVLANYGLENLRFLEPVYPGD 93 (142)
T ss_pred EEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeeecHHHHHHHHhhhCccCC---cccEEEEeccceEEECCCCCCCC
Confidence 367888999999999999999999999999999999999999999988765442 22332 246999999999999
Q ss_pred EEEEEEEEE-----C----cEEEEEEEE-ccCCeEEEEEEEEEE
Q 027032 190 TLVTEMWLQ-----G----LRVIYQVKV-KERNRSALSGFVDVH 223 (229)
Q Consensus 190 ~l~~~~~~~-----~----~~v~~~~~~-~~~g~~v~~g~~~~~ 223 (229)
+|++++++. . +.+.+++.+ ||+|++|++|+.++.
T Consensus 94 tl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~ 137 (142)
T cd03452 94 TIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVASYDILTL 137 (142)
T ss_pred EEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEEEEEehHe
Confidence 999988761 1 367777764 999999999987654
No 11
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=99.87 E-value=5.8e-21 Score=142.09 Aligned_cols=110 Identities=36% Similarity=0.503 Sum_probs=94.4
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEE
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLV 192 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~ 192 (229)
..++.++..|++++||+||||+|+++|+..||+++|+||+++++++.+++..++..++...+..++++|.+||++||+|+
T Consensus 9 ~~~~~~~~~fa~~~gd~npiH~d~~~A~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Pv~~Gd~l~ 88 (127)
T cd03441 9 TVTEADIALFARLSGDPNPIHVDPEYAKAAGFGGRIAHGMLTLSLASGLLVQWLPGTDGANLGSQSVRFLAPVFPGDTLR 88 (127)
T ss_pred EcCHHHHHHHHHHhCCCCccccCHHHHHhCCCCCceechHHHHHHHHhhhhhhccCcccceeEEeEEEEeCCcCCCCEEE
Confidence 46788899999999999999999999999999999999999999999988877622245667789999999999999999
Q ss_pred EEEEEEC-------cEEEEEEE-EccCCeEEEEEEEEE
Q 027032 193 TEMWLQG-------LRVIYQVK-VKERNRSALSGFVDV 222 (229)
Q Consensus 193 ~~~~~~~-------~~v~~~~~-~~~~g~~v~~g~~~~ 222 (229)
++.++.+ +.+.++++ .||+|++++.|++.+
T Consensus 89 ~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~ 126 (127)
T cd03441 89 VEVEVLGKRPSKGRGVVTVRTEARNQGGEVVLSGEATV 126 (127)
T ss_pred EEEEEEEeeccCCCcEEEEEEEEEeCCCCEEEEEEEEe
Confidence 9988722 35667766 488999999998875
No 12
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=99.86 E-value=6.5e-21 Score=147.75 Aligned_cols=112 Identities=27% Similarity=0.383 Sum_probs=94.1
Q ss_pred eecChhhHHHHHhhhCCCCCCCCCHHHHHh-CCCCCceechhHHHHHHHHHHHHHHccC-CCceeeEEEEEECcCCCCCC
Q 027032 112 EDYTQPSQALVYRLSGDYNPLHSDPMVAKA-AGFSRPILHGLCTMGFAVRAIIKFICRG-DPNMVKNIFSRFLLHVYPGE 189 (229)
Q Consensus 112 ~~~~~~~~~~~~~~sgd~npiH~d~~~A~~-~G~~~~i~hG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rf~~Pv~~gd 189 (229)
...+++|+..|++++||+||||+|+++|+. ++|+++|+|||++++++.+++..+...+ ....+...++||.+||++||
T Consensus 32 ~~~t~~d~~~fa~~tgD~qpiH~D~e~A~~~~~fg~~iahG~~t~a~~~~~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gd 111 (159)
T COG2030 32 RTVTEADIVLFAAVTGDPNPIHLDPEAAKKTSGFGGPIAHGMLTLALAMGLVVAALGDPSVGANLGGDEVRFVKPVFPGD 111 (159)
T ss_pred eEecHHHHHHHHHhcCCCCceecCHHHHhccCCCCCEehhHHHHHHHHHHHHHHhccCcceeeeccccceEecCCCCCCC
Confidence 357889999999999999999999999999 6999999999999999999888775321 13466778999999999999
Q ss_pred EEEEEEEEEC-------cEEEEEEE-EccCCeEEEEEEEEEE
Q 027032 190 TLVTEMWLQG-------LRVIYQVK-VKERNRSALSGFVDVH 223 (229)
Q Consensus 190 ~l~~~~~~~~-------~~v~~~~~-~~~~g~~v~~g~~~~~ 223 (229)
+|+++.++.+ +.+.++.. .||+|+.++.+.++..
T Consensus 112 tl~~~~~v~~~~~~~~~G~v~~~~~~~~~~g~~v~~~~~~~~ 153 (159)
T COG2030 112 TLRARVEVLDKRPSKSRGLVTLRLETVNQEGELVLTLEATVL 153 (159)
T ss_pred EEEEEEEEEEeeecCCceEEEEEEEEEccCCcEEEEEEEeEe
Confidence 9999998732 66777665 5999999887776643
No 13
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=99.85 E-value=2e-21 Score=144.26 Aligned_cols=87 Identities=33% Similarity=0.579 Sum_probs=71.3
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEE
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLV 192 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~ 192 (229)
.+++.++..|+.+|||+||||+|+++|+..||+++|+||+++++++.+++..++....+..+..+++||.+||++||+|+
T Consensus 17 tit~~~~~~fa~~sgD~nPiH~D~~~A~~~gf~~~ivhG~~~~a~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~~gdtl~ 96 (122)
T PF01575_consen 17 TITEADIRQFAALSGDFNPIHVDPEYARATGFGGPIVHGMLTLALASGLLGDWLGPNPPARLGRFNVRFRAPVFPGDTLT 96 (122)
T ss_dssp EEEHHHHHHHHHHHT---HHHH-HHHHHTSTTSSSB-BHHHHHHHHHHHHHHHHSTTECEEEEEEEEEESS--BTTEEEE
T ss_pred EECHHHHHHHHHhhCCCCcceecHHHHhhcCCCCEEEccHHHHHHHHHHHHHhccCccceEEEEEEEEEeccccCCCEEE
Confidence 36788889999999999999999999999999999999999999999999988743335778899999999999999999
Q ss_pred EEEEEEC
Q 027032 193 TEMWLQG 199 (229)
Q Consensus 193 ~~~~~~~ 199 (229)
+.+++.+
T Consensus 97 ~~~~v~~ 103 (122)
T PF01575_consen 97 AEVEVTE 103 (122)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9988743
No 14
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.84 E-value=3.9e-20 Score=140.37 Aligned_cols=109 Identities=28% Similarity=0.334 Sum_probs=88.5
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCce----eeEEEEEECcCCCCC
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNM----VKNIFSRFLLHVYPG 188 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~rf~~Pv~~g 188 (229)
..+..++..|++++||+||+|+|+++|+..||+++|+||+++++++.+++..+. ++... +...+++|.+||++|
T Consensus 17 tvt~~~i~~fa~~~gD~np~H~D~~~A~~~~~~~~ia~G~~~~a~~~~~~~~~~--~~~~~~~~~~g~~~~~f~~pv~~G 94 (140)
T cd03446 17 TVTEADVVMFAGLSGDWNPIHTDAEYAKKTRFGERIAHGLLTLSIATGLLQRLG--VFERTVVAFYGIDNLRFLNPVFIG 94 (140)
T ss_pred EECHHHHHHHHHhhCCCcccccCHHHHccCCCCCceeccccHHHHHhhHhhhcc--cccceeeEEeccceEEEcCCCCCC
Confidence 367888999999999999999999999999999999999999999887765432 22111 223499999999999
Q ss_pred CEEEEEEEEE---------CcEEEEEEE-EccCCeEEEEEEEEEE
Q 027032 189 ETLVTEMWLQ---------GLRVIYQVK-VKERNRSALSGFVDVH 223 (229)
Q Consensus 189 d~l~~~~~~~---------~~~v~~~~~-~~~~g~~v~~g~~~~~ 223 (229)
|+|+++.++. .+.+.+++. .||+|++|++|++++.
T Consensus 95 D~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~l 139 (140)
T cd03446 95 DTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGEMSLL 139 (140)
T ss_pred CEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEEEEEEEeee
Confidence 9999998761 135677776 4899999999998764
No 15
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=99.84 E-value=2.8e-20 Score=142.12 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=90.8
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEE
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLV 192 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~ 192 (229)
..+..++..|++++||+||+|+|+++|+..||+++|+||+++++++.+++..++.......+...+++|++||++||+|+
T Consensus 20 tvt~~~i~~fa~~~gd~~piH~D~~~a~~~~~~~~ia~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~pv~~GDtl~ 99 (146)
T cd03451 20 TVTEADNVLFTLLTMNTAPLHFDAAYAAKTEFGRRLVNSLFTLSLALGLSVNDTSLTAVANLGYDEVRFPAPVFHGDTLY 99 (146)
T ss_pred EEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCccccHHhHHHHHhhheehhccccceeccCccEEEecCCCCCCCEEE
Confidence 36788899999999999999999999999999999999999999988765554311122223345999999999999999
Q ss_pred EEEEEE----C------cEEEEEEEE-ccCCeEEEEEEEEEEec
Q 027032 193 TEMWLQ----G------LRVIYQVKV-KERNRSALSGFVDVHRL 225 (229)
Q Consensus 193 ~~~~~~----~------~~v~~~~~~-~~~g~~v~~g~~~~~~~ 225 (229)
++.++. + +.+.++..+ ||+|++|++|++++.-.
T Consensus 100 ~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~ 143 (146)
T cd03451 100 AESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTALVP 143 (146)
T ss_pred EEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEEEEEehhEEE
Confidence 988762 1 366777775 89999999999887543
No 16
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=99.82 E-value=2.3e-19 Score=160.93 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=97.4
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEE
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLV 192 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~ 192 (229)
..++.++..|++++||+||||+|+++|+..||+++|+||+++++++.+++..++ ++++.....+++||.+||++||+|+
T Consensus 25 tvT~~di~~FA~lsGD~nPiH~D~e~Ak~sgfg~~IahG~l~~s~~~~l~~~~~-~g~~~~~~~~~~rF~~PV~~GDtl~ 103 (466)
T PRK08190 25 TLTPDDIELFAAMSGDVNPAHLDAAYAASDGFHHVVAHGMWGGALISAVLGTRL-PGPGTIYLGQSLRFRRPVRIGDTLT 103 (466)
T ss_pred EecHHHHHHHHHHhCCCCCCCcCHHHHHhCCCCCceeCHHHHHHHHHHHHhhhC-CCcceEEEEEEEEEeCCcCCCCEEE
Confidence 477888999999999999999999999999999999999999999988776654 4555566789999999999999999
Q ss_pred EEEEEE-----CcEEEEEEEE-ccCCeEEEEEEEEEEecCC
Q 027032 193 TEMWLQ-----GLRVIYQVKV-KERNRSALSGFVDVHRLAS 227 (229)
Q Consensus 193 ~~~~~~-----~~~v~~~~~~-~~~g~~v~~g~~~~~~~~~ 227 (229)
+++++. .+.+.+++++ ||+|++|+.|++++.....
T Consensus 104 ~~~~V~~~~~~~~~v~~~~~~~nq~G~~V~~g~~~~l~~~~ 144 (466)
T PRK08190 104 VTVTVREKDPEKRIVVLDCRCTNQDGEVVITGTAEVIAPTE 144 (466)
T ss_pred EEEEEEEEECCCCEEEEEEEEEeCCCCEEEEEEEEeecccc
Confidence 998872 2467777764 8999999999998876543
No 17
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.81 E-value=4.5e-19 Score=134.63 Aligned_cols=109 Identities=22% Similarity=0.148 Sum_probs=86.8
Q ss_pred cChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCC-Ccee-eEEEEEECcCCCCCCEE
Q 027032 114 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGD-PNMV-KNIFSRFLLHVYPGETL 191 (229)
Q Consensus 114 ~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~rf~~Pv~~gd~l 191 (229)
.+..++..|+.+ +|+||||+|+++|+..||+++|+||+++++++.+++.+....+. .... ...+++|.+||++||+|
T Consensus 17 vt~~~v~~Fa~~-~D~npih~D~e~A~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~pv~~Gd~l 95 (140)
T cd03454 17 VTEEEIIAFARE-FDPQPFHLDEEAAKESLFGGLAASGWHTAAITMRLLVDAGLSGSASGGSPGIDELRWPRPVRPGDTL 95 (140)
T ss_pred EcHHHHHHHHHc-cCCCccCcCHHHHhcCCCCCeeechHHHHHHHHHhhhhhccccceEEEEcceeeeEeCCCCCCCCEE
Confidence 677889999997 99999999999999999999999999999999877654332221 1122 23599999999999999
Q ss_pred EEEEEEE---------C-cEEEEEEEE-ccCCeEEEEEEEEEE
Q 027032 192 VTEMWLQ---------G-LRVIYQVKV-KERNRSALSGFVDVH 223 (229)
Q Consensus 192 ~~~~~~~---------~-~~v~~~~~~-~~~g~~v~~g~~~~~ 223 (229)
+++.++. + +.+.+++.+ ||+|++|++|++++.
T Consensus 96 ~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~~ 138 (140)
T cd03454 96 SVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVVLTFEATVL 138 (140)
T ss_pred EEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEEEEEEehhe
Confidence 9988761 1 256666664 899999999998753
No 18
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=99.80 E-value=1.8e-18 Score=132.47 Aligned_cols=108 Identities=20% Similarity=0.144 Sum_probs=84.5
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCc----eeeEEEEEECcCCCCC
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPN----MVKNIFSRFLLHVYPG 188 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~rf~~Pv~~g 188 (229)
..+..++..|++++||+||+|+|+++|+..||+++|+||+++++++.+++.+++. .+.. .+...++||.+||++|
T Consensus 23 ~vt~~di~~FA~~sgD~nPiH~D~e~A~~~gfg~~Ia~G~~t~sl~~~l~~~~~~-~~~~~~~~~~g~~~~rF~~PV~~G 101 (149)
T cd03450 23 TVDQERIDQFADATGDHQWIHVDPERAAAEPFGGTIAHGFLTLSLLPALTPQLFR-VEGVKMGVNYGLDKVRFPAPVPVG 101 (149)
T ss_pred EECHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeEECHHHHHHHHHHHHHhccc-CCCceEEEEeeccEEEeCcceeCC
Confidence 3678899999999999999999999999999999999999999999998877642 2222 2334689999999999
Q ss_pred CEEEEEEEEE------Cc--EEEEEEE--EccCCeEEEEEEEE
Q 027032 189 ETLVTEMWLQ------GL--RVIYQVK--VKERNRSALSGFVD 221 (229)
Q Consensus 189 d~l~~~~~~~------~~--~v~~~~~--~~~~g~~v~~g~~~ 221 (229)
|+|+++.++. ++ ++..+.. ....+++++..+..
T Consensus 102 Dtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 144 (149)
T cd03450 102 SRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDKPACVAEWI 144 (149)
T ss_pred cEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCCceEEEEEE
Confidence 9999998862 23 4444333 34556777766543
No 19
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=99.78 E-value=7.9e-18 Score=131.08 Aligned_cols=110 Identities=11% Similarity=0.036 Sum_probs=82.7
Q ss_pred cChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHc----cC-CCce-e-eEEEEEECcCCC
Q 027032 114 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFIC----RG-DPNM-V-KNIFSRFLLHVY 186 (229)
Q Consensus 114 ~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~----~~-~~~~-~-~~~~~rf~~Pv~ 186 (229)
.+..++..|++++||+||+|+|++||+..||+++|+||++. +++...+...+. .| +... + ..++++|.+||+
T Consensus 20 Vt~~~I~~FA~~~GD~nPlH~D~eyA~~s~fg~~IApgt~~-~~~~~~~~~~~~~~~~~g~~~~~~v~~~q~~~f~rPV~ 98 (166)
T PRK13691 20 VGREQIRQFARAVKCDHPAFFSEDAAAELGYDALVAPLTFV-TIFAKYVQLDFFRHVDVGMETMQIVQVDQRFVFHKPVL 98 (166)
T ss_pred ECHHHHHHHHHHHCCCCCcccCHHHHHhCCCCCcccCHHHH-HHHHHHhccccccccccCCCcceeeeeeeEEEEeCCcC
Confidence 57889999999999999999999999999999999999886 333222221111 11 1111 1 356899999999
Q ss_pred CCCEEEEEEEEE----C---cEEEEEEE-EccCCeEEEEEEEEEEe
Q 027032 187 PGETLVTEMWLQ----G---LRVIYQVK-VKERNRSALSGFVDVHR 224 (229)
Q Consensus 187 ~gd~l~~~~~~~----~---~~v~~~~~-~~~~g~~v~~g~~~~~~ 224 (229)
+||+|+++.++. + +.+.++.. .||+|++|++++.++.-
T Consensus 99 ~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~ 144 (166)
T PRK13691 99 AGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELVMEAYTTLMG 144 (166)
T ss_pred CCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 999999998762 1 46677766 49999999999876543
No 20
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=99.76 E-value=1.1e-17 Score=129.52 Aligned_cols=111 Identities=9% Similarity=0.077 Sum_probs=83.5
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHc----cCCCc-ee-eEEEEEECcCCC
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFIC----RGDPN-MV-KNIFSRFLLHVY 186 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~----~~~~~-~~-~~~~~rf~~Pv~ 186 (229)
..+.+++..|++++||+||+|+|++||+..+|+++|+|+++..++.......+.. ..+.. .+ .+++++|.+||+
T Consensus 19 tvt~~dI~~FA~~~GD~nPlh~D~e~A~~~~fg~~iA~~~~~~~~gl~~~~~~~~~~~l~~~~~~~~~~~q~~~f~~PV~ 98 (159)
T PRK13692 19 EVEREKIREYAVAVQNDDAAYFEEDAAAELGYKGLLAPLTFICVFGYKAQSAFFKHANIAVADAQIVQVDQVLKFEKPIV 98 (159)
T ss_pred EeCHHHHHHHHHHHCCCCCCccCHHHHHhcCCCCcccChHHHHHhhhhhhhhhhhcccCCCCccceEeeeeEEEEeCCcc
Confidence 4678899999999999999999999999999999999988865433321111110 00111 11 247999999999
Q ss_pred CCCEEEEEEEEE-----C--cEEEEEEE-EccCCeEEEEEEEEEE
Q 027032 187 PGETLVTEMWLQ-----G--LRVIYQVK-VKERNRSALSGFVDVH 223 (229)
Q Consensus 187 ~gd~l~~~~~~~-----~--~~v~~~~~-~~~~g~~v~~g~~~~~ 223 (229)
+||+|++++++. + +.+.++.. .||+|++|+++++++.
T Consensus 99 ~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq~Ge~V~~~~~~~~ 143 (159)
T PRK13692 99 AGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDVVQETYTTLA 143 (159)
T ss_pred CCCEEEEEEEEEEEEEcCCceEEEEEEEEEcCCCCEEEEEEEEEE
Confidence 999999988762 1 46777776 4999999999988764
No 21
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=99.71 E-value=6.1e-17 Score=150.76 Aligned_cols=107 Identities=22% Similarity=0.213 Sum_probs=88.9
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCce---eeEEEEEECcCCCCCC
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNM---VKNIFSRFLLHVYPGE 189 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~rf~~Pv~~gd 189 (229)
..+..|+..|+.+|||+||||+|+++|+..+|+++|+||+++++++.+++..+. +... +...++||++||++||
T Consensus 540 tvt~~dI~~FA~~sgD~nPiH~D~e~A~~s~fg~~Ia~G~l~~sl~~~l~~~~~---~~~~~~~~g~~~~rF~~PV~~GD 616 (663)
T TIGR02278 540 TVTEADIALFAALSGDHFYAHMDEIAARESFFGKRVAHGYFVLSAAAGLFVDPA---PGPVLANYGLENLRFLEPVGPGD 616 (663)
T ss_pred EEcHHHHHHHHHhhCCCCcccCCHHHHhhCCCCCceeCHHHHHHHHHHHhhccC---ccchhhhcccceEEEcCCCCCCC
Confidence 367889999999999999999999999999999999999999999988775543 2222 2346999999999999
Q ss_pred EEEEEEEEE------C---cEEEEEEEE-ccCCeEEEEEEEEE
Q 027032 190 TLVTEMWLQ------G---LRVIYQVKV-KERNRSALSGFVDV 222 (229)
Q Consensus 190 ~l~~~~~~~------~---~~v~~~~~~-~~~g~~v~~g~~~~ 222 (229)
+|++++++. + +.+++++.+ ||+|++|++++.++
T Consensus 617 tl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~G~~Vl~~~~~~ 659 (663)
T TIGR02278 617 TIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQNGEPVATYDVLT 659 (663)
T ss_pred EEEEEEEEEEEEecCCCCceEEEEEEEEEcCCCCEEEEEEEHH
Confidence 999988762 1 257777764 89999999998754
No 22
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=99.69 E-value=1.5e-16 Score=148.76 Aligned_cols=109 Identities=22% Similarity=0.168 Sum_probs=88.5
Q ss_pred ecChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCC-CceeeEEEEEECcCCCCCCEE
Q 027032 113 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGD-PNMVKNIFSRFLLHVYPGETL 191 (229)
Q Consensus 113 ~~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rf~~Pv~~gd~l 191 (229)
..+..++..|+.++||+||||+|+++|+..||+++|+||+++++++.+++..+. .+. ...+...++||.+||++||+|
T Consensus 552 tvt~~di~~FA~lsgD~nPiH~D~e~A~~~~fg~~ia~G~l~~sl~~~l~~~~~-~~~~~~~~g~~~~rF~~PV~~GDtl 630 (675)
T PRK11563 552 TVTEADIVNFACLSGDTFYAHMDEIAAAANFFGGRVAHGYFVLSAAAGLFVDPA-PGPVLANYGLENLRFLTPVKPGDTI 630 (675)
T ss_pred EEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCceeCHHHHHHHHHHHhhccC-ccchhhhcccceEEEcCCCCCCCEE
Confidence 367889999999999999999999999999999999999999999998776553 111 111223589999999999999
Q ss_pred EEEEEEE-----C----cEEEEEEEE-ccCCeEEEEEEEEE
Q 027032 192 VTEMWLQ-----G----LRVIYQVKV-KERNRSALSGFVDV 222 (229)
Q Consensus 192 ~~~~~~~-----~----~~v~~~~~~-~~~g~~v~~g~~~~ 222 (229)
+++.++. + +.+++++.+ ||+|++|++|+..+
T Consensus 631 ~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~G~~V~~~~~~~ 671 (675)
T PRK11563 631 QVRLTCKRKTPRRQAPYGVVRWDVEVTNQDGELVATYDILT 671 (675)
T ss_pred EEEEEEEEEEecCCCCceEEEEEEEEEECCCCEEEEEEEHH
Confidence 9988762 1 356777764 89999999998754
No 23
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=99.37 E-value=3.4e-12 Score=95.73 Aligned_cols=64 Identities=25% Similarity=0.462 Sum_probs=54.7
Q ss_pred CCCCCCCCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEc---CCeEEEEEEEEEEECCCCcEEEEE
Q 027032 4 QHNRHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDK---GKAAILEIETKSYNAESGELLCMN 68 (229)
Q Consensus 4 ~~~~~~~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~---g~g~~v~~~~~~~~~~~g~~v~~~ 68 (229)
...++|+.++||++|+++||+||++||+|+++++|.++++| |++.+++++.++++ ++|++|+++
T Consensus 66 ~~~~~~~~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~-~~Ge~v~t~ 132 (132)
T PF13452_consen 66 PDLGFDLTRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTD-QDGELVATQ 132 (132)
T ss_dssp GCCSS-GGGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE-
T ss_pred ecCCCChhhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEEC-CCCCEEEeC
Confidence 45678999999999999999999999999999999999998 46889999999885 999999985
No 24
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=99.11 E-value=1.4e-09 Score=84.81 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=62.7
Q ss_pred CCCCCCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCcC
Q 027032 6 NRHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAG 78 (229)
Q Consensus 6 ~~~~~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~~ 78 (229)
++++..+++|++|+++|++|+++||.|+++.+|.++.+++.+.+++++.+++ ||+|++|++...+++.+...
T Consensus 77 ~g~~~~~~v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~-NQ~Ge~V~~~~~~~~~~~~~ 148 (166)
T PRK13691 77 VGMETMQIVQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCT-NDDGELVMEAYTTLMGQQGD 148 (166)
T ss_pred cCCCcceeeeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEE-CCCCCEEEEEEEEEEEecCC
Confidence 4567777899999999999999999999999999998765545678888887 59999999999999998653
No 25
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=99.07 E-value=2.2e-10 Score=85.82 Aligned_cols=103 Identities=21% Similarity=0.140 Sum_probs=69.1
Q ss_pred cChhhHHHHHhhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHH--HHHHHccCCCcee--eEEEEEECcCCCCCC
Q 027032 114 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRA--IIKFICRGDPNMV--KNIFSRFLLHVYPGE 189 (229)
Q Consensus 114 ~~~~~~~~~~~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~rf~~Pv~~gd 189 (229)
.+..++..|+.+.||.||.|+|+++|+..|+++.+++.++...+.... +... ++.+...+ .+.+++|.+|+++||
T Consensus 14 v~~~~i~~ya~avg~~~p~~~d~~~a~~~~~~~~~apPt~~~~~~~~~~~~~~~-~~~~~~~~vh~~~~~~~h~Pl~~Gd 92 (132)
T PF13452_consen 14 VTRRDIRRYALAVGDPNPLYLDEEYARAAGHGGLIAPPTFAVVLAWPAPAMFPD-LGFDLTRLVHGEQDIEFHRPLRPGD 92 (132)
T ss_dssp E-HHHHHHHHHHTT-CTTHHHHCTSS--TTSTT-B--GGGHHHHHHHCCGGCGC-CSS-GGGEEEEEEEEEESS--BSSE
T ss_pred ECHHHHHHHHHHhCcCCccccCHhHhhccCCCCcccCHHHHhhhhcccceeeec-CCCChhhEEecCcEEEEeCCCCCCC
Confidence 677889999999999999999999999999999999999988777643 2221 12233333 478999999999999
Q ss_pred EEEEEEEE-----E-C-c-E--EEEEEE-EccCCeEEEE
Q 027032 190 TLVTEMWL-----Q-G-L-R--VIYQVK-VKERNRSALS 217 (229)
Q Consensus 190 ~l~~~~~~-----~-~-~-~--v~~~~~-~~~~g~~v~~ 217 (229)
+|+++.++ . + | . +.++.. .|++|++|++
T Consensus 93 ~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v~t 131 (132)
T PF13452_consen 93 TLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELVAT 131 (132)
T ss_dssp EEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEEEE
T ss_pred EEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEEEe
Confidence 99998775 2 1 2 2 344444 3899999875
No 26
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=99.00 E-value=7.6e-09 Score=80.11 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=60.6
Q ss_pred CCCCCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 7 RHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 7 ~~~~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
+++..+.+|++++++|++|+++||+|+++.+|.++++++...+++++.+++ ||+|++|++.+.+++.|+.
T Consensus 78 ~~~~~~~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~-Nq~Ge~V~~~~~~~~~r~~ 147 (159)
T PRK13692 78 AVADAQIVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVT-NEEGDVVQETYTTLAGRAG 147 (159)
T ss_pred CCCccceEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEE-cCCCCEEEEEEEEEEEecC
Confidence 445577999999999999999999999999999988764334678888888 5999999999999999965
No 27
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.57 E-value=1.2e-06 Score=69.44 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=57.9
Q ss_pred CCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEEE---CcEEEEEEEEccCCeEEEEEEEE
Q 027032 145 SRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKVKERNRSALSGFVD 221 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~---~~~v~~~~~~~~~g~~v~~g~~~ 221 (229)
...++||.++++.+..++... .++........+++|++||+|||+|.+++++. ++.+.+.+.+.++|++++.|+++
T Consensus 100 ~~~i~hG~f~~aqa~~la~~~-~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~v~g~~V~ege~~ 178 (185)
T PRK04424 100 KTGIARGHHLFAQANSLAVAV-IDAELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSYVGDELVFRGKFI 178 (185)
T ss_pred CCCeecHHHHHHHHHHHHHHh-cCCcEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEEECCEEEEEEEEE
Confidence 467999999999888754432 22322223456999999999999999999873 24556666666789999999988
Q ss_pred EEe
Q 027032 222 VHR 224 (229)
Q Consensus 222 ~~~ 224 (229)
+..
T Consensus 179 ~~~ 181 (185)
T PRK04424 179 MYR 181 (185)
T ss_pred EEE
Confidence 643
No 28
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.43 E-value=6.8e-06 Score=61.06 Aligned_cols=92 Identities=15% Similarity=0.060 Sum_probs=62.8
Q ss_pred CCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHc--c----CCCceeeE-EEEEECcCCCCCCEEEEEEEE---ECcE
Q 027032 132 LHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFIC--R----GDPNMVKN-IFSRFLLHVYPGETLVTEMWL---QGLR 201 (229)
Q Consensus 132 iH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~--~----~~~~~~~~-~~~rf~~Pv~~gd~l~~~~~~---~~~~ 201 (229)
|..|..+++....+++++||.+..-++.++..-+.. . +....+.+ .+++|.+|+++||+++++++. .++.
T Consensus 28 v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~ 107 (131)
T cd01288 28 VTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGI 107 (131)
T ss_pred ecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCE
Confidence 344555677666788999999885555444332211 1 11112233 589999999999999999886 3456
Q ss_pred EEEEEEEccCCeEEEEEEEEEE
Q 027032 202 VIYQVKVKERNRSALSGFVDVH 223 (229)
Q Consensus 202 v~~~~~~~~~g~~v~~g~~~~~ 223 (229)
+.++...+.+|+++++|++++.
T Consensus 108 ~~~~~~~~~~g~~v~~~~~~~~ 129 (131)
T cd01288 108 GKFKGKAYVDGKLVAEAELMFA 129 (131)
T ss_pred EEEEEEEEECCEEEEEEEEEEE
Confidence 6677666778999999998764
No 29
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.42 E-value=5.8e-06 Score=63.03 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=59.1
Q ss_pred CHHHHHhCCCCCceechhHHHHHHHHHHHHHH--cc---CCCceeeEE-EEEECcCCCCCCEEEEEEEEE---CcEEEEE
Q 027032 135 DPMVAKAAGFSRPILHGLCTMGFAVRAIIKFI--CR---GDPNMVKNI-FSRFLLHVYPGETLVTEMWLQ---GLRVIYQ 205 (229)
Q Consensus 135 d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~--~~---~~~~~~~~~-~~rf~~Pv~~gd~l~~~~~~~---~~~v~~~ 205 (229)
|..+.+....+++|+||.+..-++.++..-+. .. +....+.++ +++|.+||++||+|++++++. ++.+.++
T Consensus 46 d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~ 125 (147)
T PRK00006 46 NEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFK 125 (147)
T ss_pred CCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEE
Confidence 33344444457899999888443333222111 11 112223443 799999999999999998863 3567777
Q ss_pred EEEccCCeEEEEEEEEEEe
Q 027032 206 VKVKERNRSALSGFVDVHR 224 (229)
Q Consensus 206 ~~~~~~g~~v~~g~~~~~~ 224 (229)
....++|+.+++|++++..
T Consensus 126 ~~~~~~g~~v~~~~~~~~~ 144 (147)
T PRK00006 126 GVATVDGKLVAEAELMFAI 144 (147)
T ss_pred EEEEECCEEEEEEEEEEEE
Confidence 7766789999999988753
No 30
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=98.34 E-value=6.7e-06 Score=62.41 Aligned_cols=62 Identities=10% Similarity=0.198 Sum_probs=52.7
Q ss_pred EeceEEEEEccCCCCCEEEEEEEEeEEEEcC--CeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 15 HGQQYMELYKPFPSSASIRNEACIAGLHDKG--KAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 15 H~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g--~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
++.++++|++|+++||.|+++.+|.++.++. ...++++++.++ |++|++|++.+.+++.+.+
T Consensus 78 ~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~-nq~g~~V~~~~~~~~~~~~ 141 (142)
T cd03452 78 YGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVT-NQNGELVASYDILTLVAKK 141 (142)
T ss_pred eccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEE-ecCCCEEEEEEehHeeEec
Confidence 6779999999999999999999999998753 235678888888 4999999999999887644
No 31
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.23 E-value=9.7e-06 Score=61.15 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=52.1
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEc-C--CeEEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDK-G--KAAILEIETKSYNAESGELLCMNRMTAFLR 75 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~-g--~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r 75 (229)
...++.++++|++|+++||+|+++.+|.++.++ + ...++++++.++ |++|++|++.+.+++.+
T Consensus 75 ~~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~-nq~g~~v~~~~~~~~~~ 140 (140)
T cd03454 75 GGSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETL-NQRGEVVLTFEATVLVR 140 (140)
T ss_pred EEEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEE-cCCCCEEEEEEehheeC
Confidence 456777899999999999999999999999975 2 223578888888 49999999999887653
No 32
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.19 E-value=1.7e-05 Score=59.76 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=50.6
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcC--CeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKG--KAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g--~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
..++.++++|++|+++||+|+++.+|.+++++. ...+++++..++ |++|++|++.+.+++
T Consensus 78 ~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~-nq~g~~v~~~~~~~l 139 (140)
T cd03446 78 AFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVV-NQRGEVVQSGEMSLL 139 (140)
T ss_pred EEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEE-cCCCCEEEEEEEeee
Confidence 457788999999999999999999999998763 234678888877 499999999988765
No 33
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.13 E-value=2.4e-05 Score=59.34 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=52.1
Q ss_pred EeceEEEEEccCCCCCEEEEEEEEeEEEEc-C--CeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 15 HGQQYMELYKPFPSSASIRNEACIAGLHDK-G--KAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 15 H~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~-g--~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
.+.++++|++|+++||.|+++.+|.+++++ + ...+++++.+++ +++|++|++.+.+++.+..
T Consensus 81 ~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~-nq~g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 81 LGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGY-NQDGEPVLSFERTALVPKR 145 (146)
T ss_pred cCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEE-CCCCCEEEEEEehhEEEcC
Confidence 445799999999999999999999999874 2 235678888887 5999999999999888743
No 34
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=98.06 E-value=8.4e-05 Score=66.60 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=66.1
Q ss_pred CCCCHHHHHhCCCCCceechhHHHHHHHHHHHHH---HccCCC---ceeeEE-EEEECcCCCCCCEEEEEEEEE----Cc
Q 027032 132 LHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKF---ICRGDP---NMVKNI-FSRFLLHVYPGETLVTEMWLQ----GL 200 (229)
Q Consensus 132 iH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~---~~~~~~---~~~~~~-~~rf~~Pv~~gd~l~~~~~~~----~~ 200 (229)
++.|..|++...++.+++||.+..=++.+...-+ ...+.. ..+.++ +++|.+||+|||+|++++++. ++
T Consensus 356 Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~g 435 (464)
T PRK13188 356 VTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRG 435 (464)
T ss_pred cCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCC
Confidence 7888888887778899999999884444332211 111112 234454 899999999999999998752 45
Q ss_pred EEEEEEEEccCCeEEEEEEEEEE
Q 027032 201 RVIYQVKVKERNRSALSGFVDVH 223 (229)
Q Consensus 201 ~v~~~~~~~~~g~~v~~g~~~~~ 223 (229)
.+.|+..+.++|+++++|+..+.
T Consensus 436 iv~f~g~~~vdGelVaeael~~~ 458 (464)
T PRK13188 436 ICQMQGKAYVNGKLVCEAELMAQ 458 (464)
T ss_pred EEEEEEEEEECCEEEEEEEEEEE
Confidence 66777776688999999988764
No 35
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=98.06 E-value=4.9e-05 Score=58.18 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=51.7
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCe-EEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKA-AILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g-~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
..++.++++|++|+.+||+|+++.+|.+++++.++ ..++++.+++.....++++..++..+|
T Consensus 85 ~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 147 (149)
T cd03450 85 VNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDKPACVAEWISRL 147 (149)
T ss_pred EEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCCceEEEEEEEee
Confidence 45678999999999999999999999999998764 777777777765567888888887665
No 36
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.96 E-value=0.00033 Score=50.93 Aligned_cols=78 Identities=19% Similarity=0.046 Sum_probs=55.6
Q ss_pred ceechhHHHHHHHHHHHHHHccCCC-ceeeEEEEEECcCCCCCCEEEEEEEEE--Cc-EEEEEEEE-ccCCeEEEEEEEE
Q 027032 147 PILHGLCTMGFAVRAIIKFICRGDP-NMVKNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKV-KERNRSALSGFVD 221 (229)
Q Consensus 147 ~i~hG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rf~~Pv~~gd~l~~~~~~~--~~-~v~~~~~~-~~~g~~v~~g~~~ 221 (229)
-++||...++++..+.......... ..-..++++|.+|+.+||++.+++++. ++ ...+++.+ +++|+++..++++
T Consensus 31 g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~g~~~~~~~~~i~~~~~~~va~~~~t 110 (114)
T TIGR02286 31 GTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGERLEAEAVEVSRGGRTGTYDVEVVNQEGELVALFRGT 110 (114)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCCEEEEEEEE
Confidence 4899999999998765433311211 223578999999999999999998873 33 33445443 6889999899888
Q ss_pred EEe
Q 027032 222 VHR 224 (229)
Q Consensus 222 ~~~ 224 (229)
+..
T Consensus 111 ~~~ 113 (114)
T TIGR02286 111 SRR 113 (114)
T ss_pred EEE
Confidence 764
No 37
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=97.95 E-value=0.00011 Score=53.88 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=49.7
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEE
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMT 71 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t 71 (229)
...++..++++|++|+++||+|+++.++.+.+++....+++++...++ ++|+++++.+.+
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~v~~g~~~ 125 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARN-QGGEVVLSGEAT 125 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEe-CCCCEEEEEEEE
Confidence 467899999999999999999999999999988743334677877775 789998885554
No 38
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=97.94 E-value=0.00013 Score=53.68 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=50.3
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
.+.++.+++++|++|+.+||.|++++++.++.++ ++ .++++...++ ++|+++++.+.+++
T Consensus 68 ~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~-~~-~v~~~~~~~~-~~g~~v~~g~~~~~ 127 (128)
T cd03449 68 PGTIYLSQSLRFLRPVFIGDTVTATVTVTEKRED-KK-RVTLETVCTN-QNGEVVIEGEAVVL 127 (128)
T ss_pred ceEEEEEEEEEECCCccCCCEEEEEEEEEEEecC-CC-EEEEEEEEEe-CCCCEEEEEEEEEe
Confidence 4678899999999999999999999999999764 23 4567777775 78999999998865
No 39
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=97.87 E-value=0.00034 Score=52.73 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=53.7
Q ss_pred CCceechhHHHHHHHHHHHHHHc---c---CC--CceeeE-EEEEECcCCCCCCEEEEEEEEE---CcEEEEEEEEccCC
Q 027032 145 SRPILHGLCTMGFAVRAIIKFIC---R---GD--PNMVKN-IFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKVKERN 212 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~~~~~~---~---~~--~~~~~~-~~~rf~~Pv~~gd~l~~~~~~~---~~~v~~~~~~~~~g 212 (229)
+.++++|.+..=.+.+...-+.. . +. ...+.+ .+++|.+|+++||+|++.++.. ++.+.++...+.+|
T Consensus 49 ~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~~~~~g 128 (140)
T TIGR01750 49 EKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGEATVDG 128 (140)
T ss_pred CcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEEEEEECC
Confidence 45788897776665554432210 1 11 123344 4899999999999999988863 35666776667789
Q ss_pred eEEEEEEEEE
Q 027032 213 RSALSGFVDV 222 (229)
Q Consensus 213 ~~v~~g~~~~ 222 (229)
+++++|++++
T Consensus 129 ~~va~~~~~~ 138 (140)
T TIGR01750 129 KVVAEAEITF 138 (140)
T ss_pred EEEEEEEEEE
Confidence 9999999876
No 40
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.86 E-value=0.00018 Score=53.30 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=44.6
Q ss_pred ceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEE
Q 027032 17 QQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMT 71 (229)
Q Consensus 17 ~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t 71 (229)
+.+++|++|+.+||.|+++.+|.++++++...+++++..+++ ++|+.|++.+.+
T Consensus 72 ~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~n-q~g~~v~~g~a~ 125 (127)
T cd03453 72 SFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATD-QAGGKKVLGRAI 125 (127)
T ss_pred EEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEE-cCCCEEEEEEEE
Confidence 567999999999999999999999987643235678888885 999999887754
No 41
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=97.78 E-value=0.00025 Score=52.29 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=46.6
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEE
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 72 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~ 72 (229)
....+++++|++|+.+||.|+++.+|.+.++. + +++++.++. |++|++|++.+.++
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~-~--~v~~~~~~~-nq~G~~v~~g~a~v 122 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDD-E--VVTVELWAR-NSEGDHVMAGTATV 122 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeeccC-c--EEEEEEEEE-cCCCCEEEeEEEEE
Confidence 34467799999999999999999999987543 2 788888888 49999999888764
No 42
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=97.69 E-value=0.0016 Score=43.24 Aligned_cols=78 Identities=26% Similarity=0.257 Sum_probs=58.3
Q ss_pred CCceechhHHHHHHHHHHHHHHcc----CCCceeeEEEEEECcCCCCCCEEEEEEEEEC---cEEEEEEEE-ccCCeEEE
Q 027032 145 SRPILHGLCTMGFAVRAIIKFICR----GDPNMVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKV-KERNRSAL 216 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~~---~~v~~~~~~-~~~g~~v~ 216 (229)
...++||.....++......++.. +....+.+.+++|.+|+++||.+.++.+..+ ..+.++... +++|+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (100)
T cd03440 14 GGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVRNEDGKLVA 93 (100)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEEEEECCCCCEEE
Confidence 456899999999999888777632 2244557889999999999999999998843 345555553 55688888
Q ss_pred EEEEEE
Q 027032 217 SGFVDV 222 (229)
Q Consensus 217 ~g~~~~ 222 (229)
.+..++
T Consensus 94 ~~~~~~ 99 (100)
T cd03440 94 TATATF 99 (100)
T ss_pred EEEEEe
Confidence 876653
No 43
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=97.62 E-value=0.002 Score=47.51 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=52.4
Q ss_pred CceechhHHHHHHHHHHHHHHccC--------CCceeeE-EEEEECcCCCCCCEEEEEEEEE---CcEEEEEEEEccCCe
Q 027032 146 RPILHGLCTMGFAVRAIIKFICRG--------DPNMVKN-IFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKVKERNR 213 (229)
Q Consensus 146 ~~i~hG~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~rf~~Pv~~gd~l~~~~~~~---~~~v~~~~~~~~~g~ 213 (229)
.++++|.+..=++.+....++... ....+.+ .+++|.+|+++||++++++++. ++.+.++.....+|+
T Consensus 41 ~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~~~~~~g~ 120 (131)
T cd00493 41 DPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDGRAYVDGK 120 (131)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEEEEEECCE
Confidence 578888887776666554443111 1123333 5899999999999999998873 356677766544689
Q ss_pred EEEEEEEEE
Q 027032 214 SALSGFVDV 222 (229)
Q Consensus 214 ~v~~g~~~~ 222 (229)
++++|+..+
T Consensus 121 ~v~~~~~~~ 129 (131)
T cd00493 121 LVAEAELMA 129 (131)
T ss_pred EEEEEEEEE
Confidence 999988543
No 44
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=97.58 E-value=0.00066 Score=61.46 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=54.0
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
.+.+|.+++++|++|+++||+|+++.++.+.++ +++ ++++++++++ |+|++|++.+.+++.+..
T Consensus 81 ~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~-~~~-~v~~~~~~~n-q~G~~V~~g~~~~l~~~~ 144 (466)
T PRK08190 81 PGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDP-EKR-IVVLDCRCTN-QDGEVVITGTAEVIAPTE 144 (466)
T ss_pred cceEEEEEEEEEeCCcCCCCEEEEEEEEEEEEC-CCC-EEEEEEEEEe-CCCCEEEEEEEEeecccc
Confidence 467899999999999999999999999998654 344 5677877775 999999999999888754
No 45
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=97.52 E-value=0.0023 Score=42.57 Aligned_cols=68 Identities=25% Similarity=0.272 Sum_probs=47.1
Q ss_pred eechhHHHHHHHHHHHHHHcc--C--CCceeeEEEEEECcCCCCCCEEEEEEEEE---CcEEEEEEEE-ccCCeEE
Q 027032 148 ILHGLCTMGFAVRAIIKFICR--G--DPNMVKNIFSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKV-KERNRSA 215 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~---~~~v~~~~~~-~~~g~~v 215 (229)
++||...++++..+...++.. . ......+++++|.+|+.+||++++++++. +..+.++..+ +++++.+
T Consensus 3 ~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~~~~~~ 78 (79)
T PF03061_consen 3 IVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSEDGRLC 78 (79)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEETTSCEE
T ss_pred EEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEECCCcEE
Confidence 689998898888766554421 1 12344689999999999999999998873 3556666553 5566554
No 46
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=97.51 E-value=0.00083 Score=51.96 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=53.8
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeC
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 76 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~ 76 (229)
+.-.+.+.++|++|+.+||.|+.+.++.+.+++.+.-++..+.+++ ++.|+.+.....+.++..
T Consensus 93 ~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~-~~~g~~v~~~~~~~~~~~ 156 (159)
T COG2030 93 GANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETV-NQEGELVLTLEATVLVLR 156 (159)
T ss_pred eeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEE-ccCCcEEEEEEEeEeEee
Confidence 4577889999999999999999999999999987633456676777 599999999998877653
No 47
>PLN02864 enoyl-CoA hydratase
Probab=97.39 E-value=0.002 Score=55.26 Aligned_cols=108 Identities=10% Similarity=-0.033 Sum_probs=76.2
Q ss_pred cChhhHHHHHhhhCCCCCCCCCHHHHHh----CCCCCceechhHHHHHHHHHHHH-H-Hcc---CCCcee--eEEEEEEC
Q 027032 114 YTQPSQALVYRLSGDYNPLHSDPMVAKA----AGFSRPILHGLCTMGFAVRAIIK-F-ICR---GDPNMV--KNIFSRFL 182 (229)
Q Consensus 114 ~~~~~~~~~~~~sgd~npiH~d~~~A~~----~G~~~~i~hG~~~~~~~~~~~~~-~-~~~---~~~~~~--~~~~~rf~ 182 (229)
.+..|+.+|+...|+.+|.+.|++.++. .|+++..+...+...+....... + ..+ -+...+ .++++++.
T Consensus 25 ~~~~d~~lyAl~vG~~~~~~~d~~~l~~~ye~~g~~~~~a~PTf~~vl~~~~~~~~~~~~p~~~~d~~~lVHgeq~i~~~ 104 (310)
T PLN02864 25 YTERDVALYALGVGACGRDAVDEDELKYVYHRDGQQFIKVLPTFASLFNLGSLDGFGLDLPGLNYDPSLLLHGQQYIEIY 104 (310)
T ss_pred ECHHHHHHHHHhcCCCCCCCCChHHhhhhhccccCCCcccCCceeeeccccCcccccccCCCCCCChhheeeccceEEEE
Confidence 5778899999999999999999998887 78999999888776654322111 1 011 123334 36899999
Q ss_pred cCCCCCCEEEEEEEEE----Cc---EEEEEEEE-c-cCCeEEEEEEEE
Q 027032 183 LHVYPGETLVTEMWLQ----GL---RVIYQVKV-K-ERNRSALSGFVD 221 (229)
Q Consensus 183 ~Pv~~gd~l~~~~~~~----~~---~v~~~~~~-~-~~g~~v~~g~~~ 221 (229)
+|+.++++++++.++. +| .+.++... + +.|+++.+.+.+
T Consensus 105 rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st 152 (310)
T PLN02864 105 KPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRST 152 (310)
T ss_pred CCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEE
Confidence 9999999999988763 23 24455442 3 689988866554
No 48
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=97.21 E-value=0.011 Score=42.07 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=54.2
Q ss_pred eechhHHHHHHHHHHHHHHcc----CCCceeeEEEEEECcCCCCCCEEEEEEEEE--C-cEEEEEEEE-ccCCeEEEEEE
Q 027032 148 ILHGLCTMGFAVRAIIKFICR----GDPNMVKNIFSRFLLHVYPGETLVTEMWLQ--G-LRVIYQVKV-KERNRSALSGF 219 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~--~-~~v~~~~~~-~~~g~~v~~g~ 219 (229)
++||...++++..+....+.. +......+++++|.+|+.. +.+.++++.. + ..+.+++.. +++|+++..|+
T Consensus 30 ~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~a~ 108 (113)
T cd03443 30 IVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARVVKLGRRLAVVEVEVTDEDGKLVATAR 108 (113)
T ss_pred eEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEecCceEEEEEEEEECCCCCEEEEEE
Confidence 799999999998776544311 2333456899999999999 9999988873 2 345556554 44588888888
Q ss_pred EEEE
Q 027032 220 VDVH 223 (229)
Q Consensus 220 ~~~~ 223 (229)
+++.
T Consensus 109 ~~~~ 112 (113)
T cd03443 109 GTFA 112 (113)
T ss_pred EEEe
Confidence 7753
No 49
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=97.12 E-value=0.0019 Score=60.93 Aligned_cols=59 Identities=10% Similarity=0.254 Sum_probs=49.6
Q ss_pred EeceEEEEEccCCCCCEEEEEEEEeEEEEcCC-e-EEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 15 HGQQYMELYKPFPSSASIRNEACIAGLHDKGK-A-AILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 15 H~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~-g-~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
|+.++++|++|+++||+|+++.+|.+++++.+ + .+++++..++ |++|++|++.+.++++
T Consensus 601 ~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~-nq~G~~Vl~~~~~~lv 661 (663)
T TIGR02278 601 YGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVV-NQNGEPVATYDVLTLV 661 (663)
T ss_pred cccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEE-cCCCCEEEEEEEHHhc
Confidence 67789999999999999999999999987533 2 3577888887 5999999999887654
No 50
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.02 E-value=0.022 Score=39.95 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=58.7
Q ss_pred CCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEE--ECcEE-EEEEEEccCCeEEEEEEEE
Q 027032 145 SRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGLRV-IYQVKVKERNRSALSGFVD 221 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~--~~~~v-~~~~~~~~~g~~v~~g~~~ 221 (229)
.+..++|-++++.+..++.... .++..+..+.+.|.+|..++..+.++++. ++..+ ..++...|+|++++.+.+.
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~--~~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q~g~~~~~a~~s 91 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV--PDDRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQNGKVIFTATAS 91 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC--CCCCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEECCEEEEEEEEE
Confidence 4568999999999988877654 23355789999999999999888888776 44333 3455567889999988887
Q ss_pred EE
Q 027032 222 VH 223 (229)
Q Consensus 222 ~~ 223 (229)
+.
T Consensus 92 f~ 93 (94)
T cd03445 92 FQ 93 (94)
T ss_pred Ee
Confidence 64
No 51
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=96.99 E-value=0.018 Score=41.82 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=50.3
Q ss_pred eechhHHHHHHHHHHHH--HHccCCCcee--eEEEEEECcCCCCCCEEEEEEEEE--Cc-EEEEEEEE-ccCCeEEEEEE
Q 027032 148 ILHGLCTMGFAVRAIIK--FICRGDPNMV--KNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKV-KERNRSALSGF 219 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~rf~~Pv~~gd~l~~~~~~~--~~-~v~~~~~~-~~~g~~v~~g~ 219 (229)
++||-..++++..+... .....+.... .+++++|.+|+..| .|.+++++. ++ ...+++.. +++|+++..++
T Consensus 34 ~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~gr~~~~~~~~i~~~~g~~va~~~ 112 (117)
T TIGR00369 34 SLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQVVHLGRQTGVAEIEIVDEQGRLCALSR 112 (117)
T ss_pred cChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEEEEecCceEEEEEEEEECCCCCEEEEEE
Confidence 69999999988755411 1111122222 47899999999999 899988763 33 34445553 66899999998
Q ss_pred EEE
Q 027032 220 VDV 222 (229)
Q Consensus 220 ~~~ 222 (229)
+++
T Consensus 113 ~t~ 115 (117)
T TIGR00369 113 GTT 115 (117)
T ss_pred EEE
Confidence 876
No 52
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=96.87 E-value=0.0045 Score=58.70 Aligned_cols=58 Identities=10% Similarity=0.236 Sum_probs=48.8
Q ss_pred ceEEEEEccCCCCCEEEEEEEEeEEEEcCC--eEEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027032 17 QQYMELYKPFPSSASIRNEACIAGLHDKGK--AAILEIETKSYNAESGELLCMNRMTAFLR 75 (229)
Q Consensus 17 ~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~--g~~v~~~~~~~~~~~g~~v~~~~~t~~~r 75 (229)
-++++|++|+++||+|+++.+|.+++++.+ ..++++++.+++ ++|++|++.+.+++.+
T Consensus 615 ~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~G~~V~~~~~~~lv~ 674 (675)
T PRK11563 615 LENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTN-QDGELVATYDILTLVA 674 (675)
T ss_pred cceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEE-CCCCEEEEEEEHHhcc
Confidence 368999999999999999999999987632 246788888884 9999999999886654
No 53
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=96.86 E-value=0.039 Score=38.38 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=49.2
Q ss_pred eechhHHHHHHHHHHHHHHc-----------cCCCceeeEEEEEECcCCCCCCEEEEEEEEEC---cEEEEEEEE-ccCC
Q 027032 148 ILHGLCTMGFAVRAIIKFIC-----------RGDPNMVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKV-KERN 212 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~~---~~v~~~~~~-~~~g 212 (229)
.+++...+.++..+...++. .+....+.+++++|.+|+++||++.++.+..+ ..+.+.... +++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~g 96 (110)
T cd00586 17 HVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGRKSFTFEQEIFREDG 96 (110)
T ss_pred EEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCcEEEEEEEEEECCCC
Confidence 45555555555555443331 12223446789999999999999999998743 344444443 3468
Q ss_pred eEEEEEEEEEE
Q 027032 213 RSALSGFVDVH 223 (229)
Q Consensus 213 ~~v~~g~~~~~ 223 (229)
++++.|..+..
T Consensus 97 ~~~a~~~~~~~ 107 (110)
T cd00586 97 ELLATAETVLV 107 (110)
T ss_pred eEEEEEEEEEE
Confidence 99999887654
No 54
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=96.82 E-value=0.015 Score=43.13 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=40.1
Q ss_pred eceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCC-CcEEEEEEEEE
Q 027032 16 GQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAES-GELLCMNRMTA 72 (229)
Q Consensus 16 ~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~-g~~v~~~~~t~ 72 (229)
.+++++|.+|+.+||.|+++.++.+..+ |. ++++.++++ ++ |++|++.+.++
T Consensus 71 ~~~~~rf~~PV~~gdtl~~~~~v~~~~~---~~-~~~~~~~~n-q~~g~~V~~g~~~v 123 (126)
T cd03447 71 RSFTASFVGMVLPNDELEVRLEHVGMVD---GR-KVIKVEARN-EETGELVLRGEAEV 123 (126)
T ss_pred EEEEEEEcccCcCCCEEEEEEEEEEEeC---Ce-EEEEEEEEE-CCCCCEEEEEEEEE
Confidence 3469999999999999999999988643 22 355666675 77 99998887764
No 55
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.039 Score=41.56 Aligned_cols=82 Identities=22% Similarity=0.174 Sum_probs=54.7
Q ss_pred CCceechhHHHHHHHHHHHHHHcc-CCCcee---eEEEEEECcCCCCCCEEEEEEEE--ECcE-EEEEEEE--ccCCeEE
Q 027032 145 SRPILHGLCTMGFAVRAIIKFICR-GDPNMV---KNIFSRFLLHVYPGETLVTEMWL--QGLR-VIYQVKV--KERNRSA 215 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~rf~~Pv~~gd~l~~~~~~--~~~~-v~~~~~~--~~~g~~v 215 (229)
+.-++||.+.++++..+..-.... .+.... .++++.|.+|+..|+ +++++.+ .+.+ ..+++.+ .+.++++
T Consensus 49 ~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a~v~~~G~~~~v~~i~v~~~~~~~lv 127 (141)
T COG2050 49 PGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEARVLHLGRRVAVVEIEVKNDEGGRLV 127 (141)
T ss_pred CCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEEEEEeeCCEEEEEEEEEEECCCCeEE
Confidence 445899999999988665433311 122122 378899999999999 8888776 3443 2334443 3455888
Q ss_pred EEEEEEEEecCC
Q 027032 216 LSGFVDVHRLAS 227 (229)
Q Consensus 216 ~~g~~~~~~~~~ 227 (229)
..++.++.-...
T Consensus 128 a~~~~t~~v~~~ 139 (141)
T COG2050 128 AKGTGTYAVLRK 139 (141)
T ss_pred EEEEEEEEEecC
Confidence 899888765543
No 56
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=96.77 E-value=0.027 Score=39.27 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=45.5
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
..+-.+.+++|++|++.||++++++++.++..+ .+.+...++. ++|+++++...+.+.
T Consensus 51 ~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~~----~~~~~~~~~~-~~g~~~a~~~~~~~~ 108 (110)
T cd00586 51 GLVVVELEIDYLRPLRLGDRLTVETRVLRLGRK----SFTFEQEIFR-EDGELLATAETVLVC 108 (110)
T ss_pred eEEEEEeEeeEcCccCCCCEEEEEEEEEecCcE----EEEEEEEEEC-CCCeEEEEEEEEEEE
Confidence 456688999999999999999999999987332 2345556664 479999999987664
No 57
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=96.66 E-value=0.028 Score=42.53 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=45.0
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeC
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 76 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~ 76 (229)
.+-+-++++|++|+++||.|++++++.... ++ ++.++.+++ ++|+.|++.+.+++++.
T Consensus 89 ~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~---~~-~v~~~~~~~--~~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 89 YFAGIDKARFKRPVVPGDQLILEVELLKQR---RG-IWKFKGVAT--VDGKLVAEAELMFAIRD 146 (147)
T ss_pred EEeeeeEEEEccccCCCCEEEEEEEEEEee---CC-EEEEEEEEE--ECCEEEEEEEEEEEEEc
Confidence 344557999999999999999999987663 23 345566665 47999999999988753
No 58
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=96.55 E-value=0.075 Score=38.33 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=48.8
Q ss_pred eechhHHHHHHHHHHHHHHc--cCCCceeeEE-EEEECcCCCCCCEEEEEEEEE---CcEEEEEEEE-cc-----CCeEE
Q 027032 148 ILHGLCTMGFAVRAIIKFIC--RGDPNMVKNI-FSRFLLHVYPGETLVTEMWLQ---GLRVIYQVKV-KE-----RNRSA 215 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~rf~~Pv~~gd~l~~~~~~~---~~~v~~~~~~-~~-----~g~~v 215 (229)
++||...+.++..+...... .+.......+ +++|.+|+.+||.|.+++++. +..+.++... ++ +++++
T Consensus 24 ~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~ 103 (123)
T cd03442 24 TIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRTSMEVGVEVEAEDPLTGERRLV 103 (123)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEecCCeEEEEEEEEEecCCCCcEEEE
Confidence 57887777777655433211 1222233456 799999999999999998873 3345554432 22 34677
Q ss_pred EEEEEEEEec
Q 027032 216 LSGFVDVHRL 225 (229)
Q Consensus 216 ~~g~~~~~~~ 225 (229)
.+|..++..+
T Consensus 104 a~~~~~~v~~ 113 (123)
T cd03442 104 TSAYFTFVAL 113 (123)
T ss_pred EEEEEEEEEE
Confidence 7888776543
No 59
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=96.51 E-value=0.041 Score=36.14 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=45.2
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEE
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 72 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~ 72 (229)
...+.++.++.|++|++.||.+.++.++.+...+ .+.++....+ ++|+++++...++
T Consensus 43 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~ 99 (100)
T cd03440 43 LGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRS----SVTVEVEVRN-EDGKLVATATATF 99 (100)
T ss_pred CeEEEEEEEeEEecCCCCCCEEEEEEEEEecccc----EEEEEEEEEC-CCCCEEEEEEEEe
Confidence 4678889999999999999999999999888554 3455666664 5699998876653
No 60
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=96.50 E-value=0.085 Score=40.20 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=49.3
Q ss_pred CceechhHHHHHHHH---HHHHHHccCCC--ceeeE-EEEEECcCCCCCCEEEEEEEEEC----cEEEEEEEEccCCeEE
Q 027032 146 RPILHGLCTMGFAVR---AIIKFICRGDP--NMVKN-IFSRFLLHVYPGETLVTEMWLQG----LRVIYQVKVKERNRSA 215 (229)
Q Consensus 146 ~~i~hG~~~~~~~~~---~~~~~~~~~~~--~~~~~-~~~rf~~Pv~~gd~l~~~~~~~~----~~v~~~~~~~~~g~~v 215 (229)
.+|++|-+..=.+++ .+..+...+.. ..+.+ .++||++||.|||.+.++++... +...+.....-+|+++
T Consensus 55 ~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~Vdg~~v 134 (147)
T COG0764 55 DPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVATVDGKVV 134 (147)
T ss_pred CCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEEECCEEE
Confidence 477887776554443 33434322111 12233 58999999999999999887632 2333444444578888
Q ss_pred EEEEEEEEec
Q 027032 216 LSGFVDVHRL 225 (229)
Q Consensus 216 ~~g~~~~~~~ 225 (229)
.+++..+...
T Consensus 135 ~~a~~~~~~~ 144 (147)
T COG0764 135 AEAELLFAGV 144 (147)
T ss_pred EEEEEEEEEe
Confidence 8888776543
No 61
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=96.47 E-value=0.044 Score=39.57 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=43.0
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
.+-.+.+++|.+|++.||++.+++++... |+ .....+.++++ ++|+++++.+.|+.
T Consensus 57 ~~t~~~~i~f~rp~~~G~~l~~~a~v~~~---g~-~~~~~~~~i~~-~~~~~va~~~~t~~ 112 (114)
T TIGR02286 57 AVAAQCTIDFLRPGRAGERLEAEAVEVSR---GG-RTGTYDVEVVN-QEGELVALFRGTSR 112 (114)
T ss_pred eEEEEEEEEEecCCCCCCEEEEEEEEEEe---CC-cEEEEEEEEEc-CCCCEEEEEEEEEE
Confidence 45678899999999999999999998832 22 12245556775 78999999998864
No 62
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=96.41 E-value=0.097 Score=39.35 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=40.6
Q ss_pred ceeeEE-EEEECcCCCC-CCEEEEEEEE---EC-cEEEEEEEEccCCeEEEEEEEEEEec
Q 027032 172 NMVKNI-FSRFLLHVYP-GETLVTEMWL---QG-LRVIYQVKVKERNRSALSGFVDVHRL 225 (229)
Q Consensus 172 ~~~~~~-~~rf~~Pv~~-gd~l~~~~~~---~~-~~v~~~~~~~~~g~~v~~g~~~~~~~ 225 (229)
+.+.++ +++|.+|+++ ||+++++++. .+ +...|+.....+|+++++|+.++..+
T Consensus 78 g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~v~~~~va~a~l~~~~p 137 (138)
T cd01289 78 GFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIEDQGGVLASGRLNVYQP 137 (138)
T ss_pred EEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEEECCEEEEEEEEEEEcC
Confidence 345554 7999999988 9999998764 33 56666666556789999999887654
No 63
>PRK11688 hypothetical protein; Provisional
Probab=96.39 E-value=0.09 Score=40.26 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=52.2
Q ss_pred CceechhHHHHHHHHHHHHHHcc----C--CC---------c--eeeEEEEEECcCCCCCCEEEEEEEE--ECc-EEEEE
Q 027032 146 RPILHGLCTMGFAVRAIIKFICR----G--DP---------N--MVKNIFSRFLLHVYPGETLVTEMWL--QGL-RVIYQ 205 (229)
Q Consensus 146 ~~i~hG~~~~~~~~~~~~~~~~~----~--~~---------~--~~~~~~~rf~~Pv~~gd~l~~~~~~--~~~-~v~~~ 205 (229)
.-++||-..++++..++.-.... + .. . .-.++++.|.+|+. |+.|.+++++ .++ ...++
T Consensus 55 ~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~ 133 (154)
T PRK11688 55 QSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVAR 133 (154)
T ss_pred cCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEE
Confidence 34899999999987655332211 0 00 0 12478999999995 9999999887 333 33455
Q ss_pred EEE-ccCCeEEEEEEEEEE
Q 027032 206 VKV-KERNRSALSGFVDVH 223 (229)
Q Consensus 206 ~~~-~~~g~~v~~g~~~~~ 223 (229)
+.+ +++|+++..+++++.
T Consensus 134 ~~i~~~~g~lvA~a~~t~~ 152 (154)
T PRK11688 134 MELHNEQGVHIASGTATYL 152 (154)
T ss_pred EEEECCCCCEEEEEEEEEE
Confidence 553 678999999988764
No 64
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=96.36 E-value=0.095 Score=43.25 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=55.5
Q ss_pred CceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEE--ECc-EEEEEEEEccCCeEEEEEEEEE
Q 027032 146 RPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGL-RVIYQVKVKERNRSALSGFVDV 222 (229)
Q Consensus 146 ~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~--~~~-~v~~~~~~~~~g~~v~~g~~~~ 222 (229)
+..+||-++++++..++.... .++...+.++.+.|.+|+.+| .+.++++. .|+ ....++..-|+|++++.+.+.+
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~-~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q~~~~~~~a~~~f 86 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA-PPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQDGKVVATATASF 86 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH-TTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc-cCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEECCcCEEEEEEEE
Confidence 456899988888887776543 223356789999999999999 99988876 444 3344566678999999999888
Q ss_pred EecC
Q 027032 223 HRLA 226 (229)
Q Consensus 223 ~~~~ 226 (229)
....
T Consensus 87 ~~~~ 90 (255)
T PF13622_consen 87 GRPE 90 (255)
T ss_dssp E--T
T ss_pred ccCc
Confidence 6654
No 65
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=96.32 E-value=0.039 Score=41.33 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCceechhHHHHHHHHHH---HHHHcc--CCC-----ceee-EEEEEECcCCCCCC-EEEEEEEEEC------cEEEEEE
Q 027032 145 SRPILHGLCTMGFAVRAI---IKFICR--GDP-----NMVK-NIFSRFLLHVYPGE-TLVTEMWLQG------LRVIYQV 206 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~---~~~~~~--~~~-----~~~~-~~~~rf~~Pv~~gd-~l~~~~~~~~------~~v~~~~ 206 (229)
..++++|.+..=.+.+.. ..+... ... ..+. --++||++||+||| +|++++.... +...++.
T Consensus 46 ~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~ 125 (138)
T PF07977_consen 46 GDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDG 125 (138)
T ss_dssp TS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEEEEE
Confidence 357899988774443333 222211 111 1122 35899999999999 8888776532 4566666
Q ss_pred EEccCCeEEEEE
Q 027032 207 KVKERNRSALSG 218 (229)
Q Consensus 207 ~~~~~g~~v~~g 218 (229)
....+|+.++++
T Consensus 126 ~~~vdg~~v~~~ 137 (138)
T PF07977_consen 126 TAYVDGELVAEA 137 (138)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEEE
Confidence 555678887765
No 66
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=96.24 E-value=0.11 Score=38.19 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=48.7
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
.+.+=.+.+++|++|+..||++++++++..+..+ -+++..++++ .+|+++++..++.+.-+.
T Consensus 52 ~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~----s~~~~~~i~~-~~g~~~a~~~~~~v~~d~ 113 (130)
T PRK10800 52 VAFVVRKMTVEYYAPARLDDMLEVQSEITSMRGT----SLTFTQRIVN-AEGTLLNEAEVLIVCVDP 113 (130)
T ss_pred CEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCcE----EEEEEEEEEc-CCCeEEEEEEEEEEEEEC
Confidence 3456668999999999999999999999988642 2234445664 689999999999888754
No 67
>PLN02322 acyl-CoA thioesterase
Probab=96.20 E-value=0.19 Score=38.60 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=50.1
Q ss_pred ceechhHHHHHHHHHHHH--HHccCCCcee-eEEEEEECcCCCCCCEEEEEEEEE--Cc-EEEEE--EEEc--c---CCe
Q 027032 147 PILHGLCTMGFAVRAIIK--FICRGDPNMV-KNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQ--VKVK--E---RNR 213 (229)
Q Consensus 147 ~i~hG~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~rf~~Pv~~gd~l~~~~~~~--~~-~v~~~--~~~~--~---~g~ 213 (229)
-++||-..++++..+..- ....+....+ .++++.|.+|+..|+.|++++++. ++ ...++ ++.. . .|+
T Consensus 43 G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~~~~ 122 (154)
T PLN02322 43 KVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEATPVSTGKTIQVWEVKLWKTTDKDKANKI 122 (154)
T ss_pred CCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEEEEecCCCEEEEEEEEEECCCCcccCCe
Confidence 379999999999754321 1111111222 578999999999999999998873 33 33334 4421 1 267
Q ss_pred EEEEEEEEEEe
Q 027032 214 SALSGFVDVHR 224 (229)
Q Consensus 214 ~v~~g~~~~~~ 224 (229)
.+..++.++..
T Consensus 123 lva~a~~T~~~ 133 (154)
T PLN02322 123 LISSSRVTLIC 133 (154)
T ss_pred EEEEEEEEEEE
Confidence 77788888744
No 68
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=96.20 E-value=0.041 Score=36.36 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=38.3
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLC 66 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~ 66 (229)
..+=.+.++.|++|++.||.+++++++..+..+ .++++.++++ +++++++
T Consensus 30 ~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~----~~~~~~~v~~-~~~~~~~ 79 (79)
T PF03061_consen 30 GVVTVELSIDFLRPVRPGDTLRVEARVVRVGRK----SFTVEVEVYS-EDGRLCA 79 (79)
T ss_dssp EEEEEEEEEEESS-BBTTSEEEEEEEEEEEESS----EEEEEEEEEE-TTSCEEE
T ss_pred ceEEEEEEEEEccccCCCeEEEEEEEEEEECCE----EEEEEEEEEE-CCCcEEC
Confidence 355668899999999999999999999988765 3455666775 6777764
No 69
>PLN02647 acyl-CoA thioesterase
Probab=96.15 E-value=0.94 Score=40.75 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=40.2
Q ss_pred eEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEE----CCCCcEEEEEEEEEEEeCc
Q 027032 18 QYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYN----AESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 18 ~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~----~~~g~~v~~~~~t~~~r~~ 77 (229)
.++.|++|+..|+-+.+.++|..+-... ..|.+++...+ ++....+.++.-|++.++.
T Consensus 150 D~i~F~~Pi~~g~~v~l~g~Vt~vGrSS--MEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 150 DKIVLKKPIRVDVDLKIVGAVTWVGRSS--MEIQLEVIQPTKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred CcEEEcCCCcCCcEEEEEEEEEEecCCe--EEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcC
Confidence 5789999999999999999998864432 22233322211 0123568899999999986
No 70
>COG5496 Predicted thioesterase [General function prediction only]
Probab=96.12 E-value=0.28 Score=36.07 Aligned_cols=87 Identities=21% Similarity=0.262 Sum_probs=55.4
Q ss_pred CCCCHHHHHhCCCCCceechhHHHHHHHHHHHH---HHccCCCcee-eEEEEEECcCCCCCCEEEEEEEE---ECcEEEE
Q 027032 132 LHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK---FICRGDPNMV-KNIFSRFLLHVYPGETLVTEMWL---QGLRVIY 204 (229)
Q Consensus 132 iH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~rf~~Pv~~gd~l~~~~~~---~~~~v~~ 204 (229)
-|+++ ++..+|-...++-+.+ .+++-.+..+ -.++++-..+ .+..+|..+|+.+|.++++.+.. +++.+.|
T Consensus 16 n~t~~-~~~~~~~~~VlATp~m-i~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f 93 (130)
T COG5496 16 NHTVP-PAEGSGMLNVLATPAM-IGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKF 93 (130)
T ss_pred cccCc-hhHhCCccceeehHHH-HHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEE
Confidence 34544 2445565665555443 3333322222 2233333444 47899999999999999998775 5678999
Q ss_pred EEEEccCCeEEEEEEE
Q 027032 205 QVKVKERNRSALSGFV 220 (229)
Q Consensus 205 ~~~~~~~g~~v~~g~~ 220 (229)
++.+..+|+.+.+|+-
T Consensus 94 ~i~a~~~~~~Ig~g~h 109 (130)
T COG5496 94 RIIAMEGGDKIGEGTH 109 (130)
T ss_pred EEEEeeCCcEEeeeEE
Confidence 9887677777777764
No 71
>PRK10293 acyl-CoA esterase; Provisional
Probab=96.03 E-value=0.22 Score=37.43 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=50.7
Q ss_pred ceechhHHHHHHHHHHHH---HHccCCCcee-eEEEEEECcCCCCCCEEEEEEEEE--Cc-EEEEEEEE-ccCCeEEEEE
Q 027032 147 PILHGLCTMGFAVRAIIK---FICRGDPNMV-KNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKV-KERNRSALSG 218 (229)
Q Consensus 147 ~i~hG~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~rf~~Pv~~gd~l~~~~~~~--~~-~v~~~~~~-~~~g~~v~~g 218 (229)
-++||-..++++..+..- .....+...+ .++++.|.+|+..| +|++++++. ++ ...+++.+ +++|+++..+
T Consensus 51 G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g-~l~a~a~vv~~Gr~~~~~~~~v~d~~g~l~A~~ 129 (136)
T PRK10293 51 GLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG-RVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSS 129 (136)
T ss_pred CcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCc-eEEEEEEEEecCCCEEEEEEEEEeCCCCEEEEE
Confidence 379999999988754311 1111111122 47899999999987 689988863 33 33455554 6789999988
Q ss_pred EEEEE
Q 027032 219 FVDVH 223 (229)
Q Consensus 219 ~~~~~ 223 (229)
+.++.
T Consensus 130 ~~t~~ 134 (136)
T PRK10293 130 RLTTA 134 (136)
T ss_pred EEEEE
Confidence 88764
No 72
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=96.03 E-value=0.14 Score=35.47 Aligned_cols=77 Identities=13% Similarity=-0.005 Sum_probs=54.2
Q ss_pred CceechhHHHHHHHHHHHHHHccCC---CceeeEEEEEECcCCCCCCEEEEEEEE--EC-cEEEEEEEE-ccCCeEEEEE
Q 027032 146 RPILHGLCTMGFAVRAIIKFICRGD---PNMVKNIFSRFLLHVYPGETLVTEMWL--QG-LRVIYQVKV-KERNRSALSG 218 (229)
Q Consensus 146 ~~i~hG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~rf~~Pv~~gd~l~~~~~~--~~-~~v~~~~~~-~~~g~~v~~g 218 (229)
+.++||-..++++..++........ .....++++.|.+|...++.+.++++. .+ +....++.+ +++|++++.+
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~G~lva~~ 93 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQRDGKLVASA 93 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECCCCcEEEEE
Confidence 5689999999988877654432111 233458899999999999999998886 33 344445543 5569999988
Q ss_pred EEEE
Q 027032 219 FVDV 222 (229)
Q Consensus 219 ~~~~ 222 (229)
..++
T Consensus 94 ~~~~ 97 (99)
T cd00556 94 TQSF 97 (99)
T ss_pred EEeE
Confidence 8765
No 73
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=95.99 E-value=0.087 Score=38.84 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=38.6
Q ss_pred ceeeEEEEEECcCCCCCCEEEEEEEEEC--c-EEEEEEE-EccCCeEEEEEEEEEE
Q 027032 172 NMVKNIFSRFLLHVYPGETLVTEMWLQG--L-RVIYQVK-VKERNRSALSGFVDVH 223 (229)
Q Consensus 172 ~~~~~~~~rf~~Pv~~gd~l~~~~~~~~--~-~v~~~~~-~~~~g~~v~~g~~~~~ 223 (229)
..+.+.+++|.+|+..||+|.++.++.. + .+.+... .+++|++++.|..+..
T Consensus 54 ~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~v 109 (130)
T PRK10800 54 FVVRKMTVEYYAPARLDDMLEVQSEITSMRGTSLTFTQRIVNAEGTLLNEAEVLIV 109 (130)
T ss_pred EEEEEEEEEEcCcccCCCEEEEEEEEEeeCcEEEEEEEEEEcCCCeEEEEEEEEEE
Confidence 3456899999999999999999999743 3 3344333 2567888888887654
No 74
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=95.93 E-value=0.18 Score=39.33 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=53.6
Q ss_pred CCceechhHHHHHHHHHHHHHHc--cCC-CceeeE-EEEEECcCCCCCCEE-EEEEEE------ECcEEEEEEEEccCCe
Q 027032 145 SRPILHGLCTMGFAVRAIIKFIC--RGD-PNMVKN-IFSRFLLHVYPGETL-VTEMWL------QGLRVIYQVKVKERNR 213 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~rf~~Pv~~gd~l-~~~~~~------~~~~v~~~~~~~~~g~ 213 (229)
.+++++|.+..=.+++.+.-+.. ... ...+.. -+++|++||+|||++ ++++.. .++...++....-+|+
T Consensus 71 ~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~~~~~~~~i~v~g~ 150 (169)
T TIGR01749 71 GDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRRLVMGIADGEVLVDGR 150 (169)
T ss_pred CCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEEEeecCCcEEEEEEEEEECCE
Confidence 56888888877666665544331 111 123433 489999999999996 566553 1245566665555688
Q ss_pred EEEE---EEEEEEecCCC
Q 027032 214 SALS---GFVDVHRLASS 228 (229)
Q Consensus 214 ~v~~---g~~~~~~~~~~ 228 (229)
++.+ +.+.+-++.|+
T Consensus 151 ~va~a~~~~~~~~~~~~~ 168 (169)
T TIGR01749 151 LIYTASDLRVGLFTSTSA 168 (169)
T ss_pred EEEEEECCEEEEecCCCC
Confidence 8887 55677777665
No 75
>PRK10254 thioesterase; Provisional
Probab=95.91 E-value=0.25 Score=37.17 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=50.6
Q ss_pred ceechhHHHHHHHHHHHHH-H-ccCCCcee--eEEEEEECcCCCCCCEEEEEEEEE--Cc-EEEEEEEE-ccCCeEEEEE
Q 027032 147 PILHGLCTMGFAVRAIIKF-I-CRGDPNMV--KNIFSRFLLHVYPGETLVTEMWLQ--GL-RVIYQVKV-KERNRSALSG 218 (229)
Q Consensus 147 ~i~hG~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~rf~~Pv~~gd~l~~~~~~~--~~-~v~~~~~~-~~~g~~v~~g 218 (229)
-++||-.+++++..+..-. . ...++... .++++.|.+|+..| +|++++++. ++ ...+++.+ +++|+++..+
T Consensus 51 G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g-~l~a~a~vi~~Gr~~~v~~~~v~d~~g~l~a~~ 129 (137)
T PRK10254 51 GLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG-KVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTC 129 (137)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC-eEEEEEEEEecCcCEEEEEEEEEcCCCCEEEEE
Confidence 3799999999997553211 1 11122222 47889999999887 799988873 33 34455554 6789998888
Q ss_pred EEEEE
Q 027032 219 FVDVH 223 (229)
Q Consensus 219 ~~~~~ 223 (229)
+.++.
T Consensus 130 ~~t~~ 134 (137)
T PRK10254 130 RLGTA 134 (137)
T ss_pred EEEEE
Confidence 77653
No 76
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=95.88 E-value=0.073 Score=42.17 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=42.4
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
.+=+.+.++|.+|+.+||.|.+++++.... ++-. .+....+ ++|++|++...+++.
T Consensus 126 ~~~~i~~irF~kPV~pGD~L~~ea~v~~~~--~~~~--~v~~~~~--v~g~~V~ege~~~~~ 181 (185)
T PRK04424 126 ALTGVANIRFKRPVKLGERVVAKAEVVRKK--GNKY--IVEVKSY--VGDELVFRGKFIMYR 181 (185)
T ss_pred EEEEeeeEEEccCCCCCCEEEEEEEEEEcc--CCEE--EEEEEEE--ECCEEEEEEEEEEEE
Confidence 455668999999999999999999999433 2223 4444444 479999999998865
No 77
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=95.81 E-value=0.21 Score=36.10 Aligned_cols=62 Identities=10% Similarity=0.185 Sum_probs=43.9
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcE--EEEEEEEEEEeCc
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGEL--LCMNRMTAFLRGA 77 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~--v~~~~~t~~~r~~ 77 (229)
+.+=.+.+++|.+|+..+|++++++++.++..+ .. .++..++...+|+. +++...+.+.-+.
T Consensus 43 ~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~--s~--~~~~~i~~~~~g~~~~~a~~~~~~v~~d~ 106 (121)
T PF13279_consen 43 GFVVAESEIDYLRPLRFGDRLEVETRVEEIGGK--SF--RFEQEIFRPADGKGELAATGRTVMVFVDY 106 (121)
T ss_dssp EEEEEEEEEEE-S--BTTSEEEEEEEEEEEESS--EE--EEEEEEEECSTTEEEEEEEEEEEEEEEET
T ss_pred eEEEEEEEEEEcccccCCCEEEEEEEEEEECCc--EE--EEEEEEEEcCCCceEEEEEEEEEEEEEeC
Confidence 466778999999999999999999999776554 33 44445554335544 9999999888765
No 78
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=95.75 E-value=0.093 Score=38.00 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=42.3
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
..+=.+-++.|.+|.+.| .|++++++. .+|+- +...+.++++ ++|+++++.+.++.
T Consensus 61 ~~vt~~l~i~f~~p~~~g-~l~a~a~v~---~~gr~-~~~~~~~i~~-~~g~~va~~~~t~~ 116 (117)
T TIGR00369 61 AVVGLELNANHLRPAREG-KVRAIAQVV---HLGRQ-TGVAEIEIVD-EQGRLCALSRGTTA 116 (117)
T ss_pred eEEEEEEEeeeccccCCC-EEEEEEEEE---ecCce-EEEEEEEEEC-CCCCEEEEEEEEEc
Confidence 345567899999999999 999999876 33332 3455666775 68999999999864
No 79
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=95.71 E-value=0.13 Score=38.65 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=39.4
Q ss_pred eeeEEEEEECcCCCCCCEEEEEEEEEC---cEEEEEEEEccCCeEEEEEEEEEEec
Q 027032 173 MVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKVKERNRSALSGFVDVHRL 225 (229)
Q Consensus 173 ~~~~~~~rf~~Pv~~gd~l~~~~~~~~---~~v~~~~~~~~~g~~v~~g~~~~~~~ 225 (229)
.+.+.+++|++|+..||.++++.++.+ .++.+...+-..++++++|+.++..+
T Consensus 58 ~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~s~~~~~~i~~~~~l~a~~~~~~V~v 113 (137)
T COG0824 58 VVVEAEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVNEDELLATGETTLVCV 113 (137)
T ss_pred EEEEEEeEECCCccCCCEEEEEEEEEeecCeEEEEEEEEEeCCEEEEEEEEEEEEE
Confidence 346899999999999999999998743 35666555422338888998876554
No 80
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=95.64 E-value=0.13 Score=43.04 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=59.2
Q ss_pred eechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEE--ECcEE-EEEEEEccCCeEEEEEEEEEEe
Q 027032 148 ILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGLRV-IYQVKVKERNRSALSGFVDVHR 224 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~--~~~~v-~~~~~~~~~g~~v~~g~~~~~~ 224 (229)
-++|-+++|.++.+..+.. .+...+.++.+.|.+|..++..+.+++++ +|..+ ..++...|+|++++.+.+.+..
T Consensus 22 ~~fGG~~~Aqal~Aa~~tv--~~~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q~g~~~~~a~asf~~ 99 (271)
T TIGR00189 22 RVFGGQVVGQALAAASKTV--PEEFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQHGKTIFTLQASFQA 99 (271)
T ss_pred ceEccHHHHHHHHHHHhcC--CCCCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEECCEEEEEEEEEccc
Confidence 6899999999988777664 34456679999999999999988888886 44433 3455567899999999998874
Q ss_pred c
Q 027032 225 L 225 (229)
Q Consensus 225 ~ 225 (229)
.
T Consensus 100 ~ 100 (271)
T TIGR00189 100 E 100 (271)
T ss_pred C
Confidence 3
No 81
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=95.64 E-value=0.34 Score=37.28 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=47.2
Q ss_pred echhHHHHHHHHHHH---HHHccCCCceeeEEEEEECcCCCCCCEEEEEEEEE--Cc---EEEEEEEE----ccCCeEEE
Q 027032 149 LHGLCTMGFAVRAII---KFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQ--GL---RVIYQVKV----KERNRSAL 216 (229)
Q Consensus 149 ~hG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~--~~---~v~~~~~~----~~~g~~v~ 216 (229)
+||-+.++++..... ...+.+......--++.|.+||++||.+.+.+++. |. .+.++++. ++.-..+.
T Consensus 31 ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~~~~~~~~~~~t 110 (157)
T COG1607 31 IFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAEDIRSGERRLAT 110 (157)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEecccCCcceEee
Confidence 788888888874321 11222322222234799999999999999998873 22 34555553 12223345
Q ss_pred EEEEEEEecC
Q 027032 217 SGFVDVHRLA 226 (229)
Q Consensus 217 ~g~~~~~~~~ 226 (229)
.+..++..+.
T Consensus 111 ~~~ft~VAvd 120 (157)
T COG1607 111 SAYFTFVAVD 120 (157)
T ss_pred eEEEEEEEEC
Confidence 6777766553
No 82
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=95.60 E-value=0.18 Score=36.98 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=41.7
Q ss_pred eEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 14 LHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 14 vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
+-+-++++|++|+++||.+++++++....+ + .+.++.+++ .+|+++++.+.++++
T Consensus 76 l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~---~-~~~~~~~~~--~~g~~v~~~~~~~~~ 130 (131)
T cd01288 76 FAGIDKARFRKPVVPGDQLILEVELLKLRR---G-IGKFKGKAY--VDGKLVAEAELMFAI 130 (131)
T ss_pred EeeecccEEccccCCCCEEEEEEEEEEeeC---C-EEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 444589999999999999999999886542 2 335555554 479999999887654
No 83
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=95.54 E-value=0.44 Score=37.31 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=53.6
Q ss_pred CCceechhHHHHHHHHHHHHHHc--cCC-CceeeE-EEEEECcCCCCCCE-EEEEEEEE------CcEEEEEEEEccCCe
Q 027032 145 SRPILHGLCTMGFAVRAIIKFIC--RGD-PNMVKN-IFSRFLLHVYPGET-LVTEMWLQ------GLRVIYQVKVKERNR 213 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~rf~~Pv~~gd~-l~~~~~~~------~~~v~~~~~~~~~g~ 213 (229)
.+++++|.+..=.+.+.+.-+.. ... ...+.. -+++|+++|+|||+ +++++.+. ++.+.++...-.+|+
T Consensus 74 ~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~v~g~ 153 (172)
T PRK05174 74 GDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIADGRVLVDGE 153 (172)
T ss_pred CCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEEEEEEECCE
Confidence 46888888776666655443321 111 123333 47999999999998 77776542 245566665545688
Q ss_pred EEEEE---EEEEEecCCC
Q 027032 214 SALSG---FVDVHRLASS 228 (229)
Q Consensus 214 ~v~~g---~~~~~~~~~~ 228 (229)
++.++ ...+-++.|+
T Consensus 154 ~va~a~~~~l~~~~~~~~ 171 (172)
T PRK05174 154 EIYTAKDLKVGLFKDTSA 171 (172)
T ss_pred EEEEEEeeEEEEeccCCC
Confidence 88888 5666666554
No 84
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=95.53 E-value=0.17 Score=36.81 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=37.5
Q ss_pred eeeEEEEEECcCCCCCCEEEEEEEEEC---cEEEEEEEEccCCeEEEEEEEEEEe
Q 027032 173 MVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVKVKERNRSALSGFVDVHR 224 (229)
Q Consensus 173 ~~~~~~~rf~~Pv~~gd~l~~~~~~~~---~~v~~~~~~~~~g~~v~~g~~~~~~ 224 (229)
.+.+..++|.+|+..||+|.++.++.+ ..+.+......+|+++..|..+...
T Consensus 54 vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~~~~~~~~i~~~g~~~a~~~~~~v~ 108 (126)
T TIGR02799 54 VVRSMELDYLKPARLDDLLTVTTRVVELKGASLVFAQEVRRGDTLLCEATVEVAC 108 (126)
T ss_pred EEEEEEEEEcCcccCCCEEEEEEEEEecCceEEEEEEEEEeCCEEEEEEEEEEEE
Confidence 446899999999999999999999743 2333333322467888888876543
No 85
>PLN02370 acyl-ACP thioesterase
Probab=95.50 E-value=1.7 Score=38.83 Aligned_cols=62 Identities=5% Similarity=-0.017 Sum_probs=48.4
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
..|-...++++.||+..||+|++++++.++ .+ .....+..+++..+|+.+++..++.+.-+.
T Consensus 196 ~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~--~k--~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD~ 257 (419)
T PLN02370 196 IWVVTRMQVLVDRYPTWGDVVQVDTWVSAS--GK--NGMRRDWLVRDCKTGETLTRASSVWVMMNK 257 (419)
T ss_pred eEEEEEEEEEeCcCCCCCCEEEEEEEEeeC--CC--CEEEEEEEEEECCCCeEEEEEEEEEEEEEC
Confidence 367779999999999999999999999887 21 222445666753479999999999887654
No 86
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=95.32 E-value=0.3 Score=35.07 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=40.4
Q ss_pred EEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECC----CCcEEEEEEEEEEEeC
Q 027032 19 YMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAE----SGELLCMNRMTAFLRG 76 (229)
Q Consensus 19 ~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~----~g~~v~~~~~t~~~r~ 76 (229)
+++|++|+..||.|.+++++..+..+ -. .++.+++.+. +++++++...+++...
T Consensus 57 ~~~f~~p~~~gd~l~i~~~v~~~g~~--~~--~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 57 RIDFLKPVRVGDVVELSARVVYTGRT--SM--EVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred ceEEcCccccCcEEEEEEEEEEecCC--eE--EEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 89999999999999999999888332 22 3344455322 3578999999988875
No 87
>PRK11688 hypothetical protein; Provisional
Probab=95.31 E-value=0.23 Score=38.03 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=43.8
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
..+=.+-++.|.+|.+ |+.|.+++++.. .|+- +..++.++++ ++|+++++.+.+++.
T Consensus 97 ~~vTi~l~i~fl~p~~-g~~l~a~a~v~~---~g~r-~~~~~~~i~~-~~g~lvA~a~~t~~v 153 (154)
T PRK11688 97 RLGTIDLRVDYLRPGR-GERFTATSSVLR---AGNK-VAVARMELHN-EQGVHIASGTATYLV 153 (154)
T ss_pred cceEEEEEEEeeccCC-CCeEEEEEEEEE---ccCC-EEEEEEEEEC-CCCCEEEEEEEEEEe
Confidence 3466788999999995 999999999874 3332 3345667775 689999999999864
No 88
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=95.29 E-value=0.37 Score=34.05 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=42.9
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
..+=.+.+++|++|++. +.+.+++++... + +..+.++.++++ ++|+++++...+++
T Consensus 57 ~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~---g-~~~~~~~~~~~~-~~~~~~a~a~~~~~ 112 (113)
T cd03443 57 LAVTVDLNVNYLRPARG-GDLTARARVVKL---G-RRLAVVEVEVTD-EDGKLVATARGTFA 112 (113)
T ss_pred ceEEEEEEEeEEcCCCC-CeEEEEEEEEec---C-ceEEEEEEEEEC-CCCCEEEEEEEEEe
Confidence 34556779999999999 999999998755 2 334566777775 56999999888764
No 89
>PRK10694 acyl-CoA esterase; Provisional
Probab=95.19 E-value=0.8 Score=34.21 Aligned_cols=78 Identities=13% Similarity=-0.017 Sum_probs=46.7
Q ss_pred eechhHHHHHHHHHHHHH--HccCCCceeeEE-EEEECcCCCCCCEEEEEEEEEC---cEEEE--EEEEc---c--CCe-
Q 027032 148 ILHGLCTMGFAVRAIIKF--ICRGDPNMVKNI-FSRFLLHVYPGETLVTEMWLQG---LRVIY--QVKVK---E--RNR- 213 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~rf~~Pv~~gd~l~~~~~~~~---~~v~~--~~~~~---~--~g~- 213 (229)
.+||-..+.++..+..-. ...+......++ ++.|.+|++.||.+.+.+++.. ..+.+ +++.. . .|+
T Consensus 28 ~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~sS~~v~v~v~~~~~~~~~~g~~ 107 (133)
T PRK10694 28 DIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTTSISINIEVWVKKVASEPIGQR 107 (133)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEccCceEEEEEEEEEeecccCCCCcE
Confidence 688888888876543211 112223344566 5699999999999999988732 34443 33321 1 122
Q ss_pred -EEEEEEEEEEec
Q 027032 214 -SALSGFVDVHRL 225 (229)
Q Consensus 214 -~v~~g~~~~~~~ 225 (229)
.+.++..++..+
T Consensus 108 ~~~~~~~~tfVav 120 (133)
T PRK10694 108 YKATEALFTYVAV 120 (133)
T ss_pred EEEEEEEEEEEEE
Confidence 345777776554
No 90
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=95.19 E-value=0.29 Score=37.45 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=47.9
Q ss_pred ceeEeceEEEEEccCCCCC-EEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSA-SIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~-~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
..+-+-..++|++|+.+|+ +|+.++++.++...+.+-++..+..++. +|+++++....-+
T Consensus 85 ~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~~~v--dg~~v~~a~~~~~ 145 (150)
T cd01287 85 GAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLWV--DGLRIYEAKDIAV 145 (150)
T ss_pred eEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEEEEE--CCEEEEEEEccEE
Confidence 3455667899999999999 8999999999987555555566777774 8999999987654
No 91
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=95.15 E-value=0.57 Score=33.98 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=46.2
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
.+=.+.+++|++|+..||++.+++++..+..+ .+.++..++. +|+++++..++.+..+.
T Consensus 53 ~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~----~~~~~~~i~~--~g~~~a~~~~~~v~vd~ 111 (126)
T TIGR02799 53 FVVRSMELDYLKPARLDDLLTVTTRVVELKGA----SLVFAQEVRR--GDTLLCEATVEVACVDA 111 (126)
T ss_pred EEEEEEEEEEcCcccCCCEEEEEEEEEecCce----EEEEEEEEEe--CCEEEEEEEEEEEEEEC
Confidence 56668899999999999999999999886643 2344555553 68999999998887754
No 92
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=95.08 E-value=0.21 Score=37.36 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=41.6
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
..+-+-++++|++|+++||+|++++++.... + + ++.++.+++ .+|+++++.+.++.
T Consensus 84 ~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~--~-~-~~~~~~~~~--~~g~~va~~~~~~~ 139 (140)
T TIGR01750 84 VYFAGIDKAKFRRPVVPGDQLILHAEFLKKR--R-K-IGKFKGEAT--VDGKVVAEAEITFA 139 (140)
T ss_pred EEEeecceeEECCccCCCCEEEEEEEEEEcc--C-C-EEEEEEEEE--ECCEEEEEEEEEEE
Confidence 3455568999999999999999999987332 2 2 235555554 57999999988764
No 93
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=95.05 E-value=0.69 Score=35.34 Aligned_cols=76 Identities=8% Similarity=0.081 Sum_probs=48.3
Q ss_pred CCceechhHHHHHHHHHHHHHHc--cC-----CCc---eee-EEEEEECcCCCCCC-EEEEEEEEEC-------cEEEEE
Q 027032 145 SRPILHGLCTMGFAVRAIIKFIC--RG-----DPN---MVK-NIFSRFLLHVYPGE-TLVTEMWLQG-------LRVIYQ 205 (229)
Q Consensus 145 ~~~i~hG~~~~~~~~~~~~~~~~--~~-----~~~---~~~-~~~~rf~~Pv~~gd-~l~~~~~~~~-------~~v~~~ 205 (229)
.+++++|.+..=.+++++.-++. .. .+. .+. --+++|++||.||| +|++++++.. +.+.++
T Consensus 48 ~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~ 127 (150)
T cd01287 48 GDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIAD 127 (150)
T ss_pred CCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEE
Confidence 46888988877666655433321 11 101 122 34799999999999 7888887521 345555
Q ss_pred EEEccCCeEEEEEEE
Q 027032 206 VKVKERNRSALSGFV 220 (229)
Q Consensus 206 ~~~~~~g~~v~~g~~ 220 (229)
...--+|+++.+++-
T Consensus 128 ~~~~vdg~~v~~a~~ 142 (150)
T cd01287 128 ASLWVDGLRIYEAKD 142 (150)
T ss_pred EEEEECCEEEEEEEc
Confidence 554457888887764
No 94
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=95.04 E-value=0.15 Score=38.17 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=39.4
Q ss_pred ceeEeceEEEEEccCCCCC-EEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSA-SIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNR 69 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~-~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~ 69 (229)
..+-+-.+++|++|+.+|| .|++++++..+.+...+. ..++.+++. +|+.|++..
T Consensus 83 ~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~-~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 83 PFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGM-AIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp EEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTE-EEEEEEEEE--TTEEEEEEE
T ss_pred EEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCE-EEEEEEEEE--CCEEEEEEC
Confidence 3567889999999999999 999999999985544333 345656663 799998763
No 95
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=94.90 E-value=0.28 Score=41.54 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=61.0
Q ss_pred CceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEE--ECcEE-EEEEEEccCCeEEEEEEEEE
Q 027032 146 RPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGLRV-IYQVKVKERNRSALSGFVDV 222 (229)
Q Consensus 146 ~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~--~~~~v-~~~~~~~~~g~~v~~g~~~~ 222 (229)
..-+.|-+++|.++.+..... .+...+.++.+.|.+|.-++..+.++++. +|+.+ ...+.+.|+|+++++..+.+
T Consensus 31 ~r~~fGGqv~AQal~AA~~tv--~~~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q~g~~if~~~~sF 108 (286)
T PRK10526 31 LRQVFGGQVVGQALYAAKETV--PEERLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASF 108 (286)
T ss_pred CCceechHHHHHHHHHHHhcC--CCCCCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEECCEEEEEEEEEe
Confidence 356999999999987776664 23445679999999999999988888876 44433 34555679999999999988
Q ss_pred EecCC
Q 027032 223 HRLAS 227 (229)
Q Consensus 223 ~~~~~ 227 (229)
...++
T Consensus 109 ~~~e~ 113 (286)
T PRK10526 109 QAPEA 113 (286)
T ss_pred ccCCC
Confidence 75544
No 96
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=94.90 E-value=0.64 Score=34.85 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=48.2
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
.+=.+.+++|++|+..||.+++++++..+..+ -+++..++++ ++ +++++...+.++-+.
T Consensus 57 ~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~----s~~~~~~i~~-~~-~l~a~~~~~~V~v~~ 115 (137)
T COG0824 57 FVVVEAEIDYLRPARLGDVLTVRTRVEELGGK----SLTLGYEIVN-ED-ELLATGETTLVCVDL 115 (137)
T ss_pred EEEEEEEeEECCCccCCCEEEEEEEEEeecCe----EEEEEEEEEe-CC-EEEEEEEEEEEEEEC
Confidence 56678999999999999999999999888654 2455666775 33 999999999988764
No 97
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=94.88 E-value=1.9 Score=35.90 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=42.8
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
.|-....++++++...||++++++++.+... .+..-.+.+++.++|++++++.+..++-+.
T Consensus 61 Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~~----~~~~R~f~i~d~~~G~~l~~a~s~WvliD~ 121 (261)
T PF01643_consen 61 WVLSRYQIEIHRYPRWGEKITIETWPSGFKR----FFAYRDFEIYDAEDGELLARATSIWVLIDL 121 (261)
T ss_dssp EEEEEEEEEESS--BTT-EEEEEEEEEEE-S----SEEEEEEEEE--TTS-EEEEEEEEEEEEET
T ss_pred EEEEEEEEEEEecCCCCCEEEEEEEeccCCC----cEEEEEEEEEECCCCcEEEEEEEEEEEEEh
Confidence 5566889999999999999999999988653 333445566632689999999999888654
No 98
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=94.75 E-value=0.13 Score=41.03 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=46.8
Q ss_pred cChhhHHHHH-hhhCCCCCCCCCHHHHHhCCCCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEE
Q 027032 114 YTQPSQALVY-RLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLV 192 (229)
Q Consensus 114 ~~~~~~~~~~-~~sgd~npiH~d~~~A~~~G~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~ 192 (229)
++++....|| .+.||+||||-- +-++-.|+|=+.+++++ .+. +--.+++++|.+.|-.|-.|.
T Consensus 16 is~~QAS~FAK~VAgDFNPIHD~-------DaKRFCVPGDLLFalvL---~~~------GlS~~M~f~F~GMVg~~v~L~ 79 (218)
T PF12119_consen 16 ISAEQASRFAKEVAGDFNPIHDP-------DAKRFCVPGDLLFALVL---AKY------GLSQKMRFRFSGMVGDDVPLH 79 (218)
T ss_pred EcHHHHhHHHHHhccCCCccCCC-------CCccccCccHHHHHHHH---Hhc------CccceeEEEEeeeecCCceee
Confidence 4566667888 489999999942 23566899999999875 221 122578999999987777666
Q ss_pred EE
Q 027032 193 TE 194 (229)
Q Consensus 193 ~~ 194 (229)
..
T Consensus 80 f~ 81 (218)
T PF12119_consen 80 FP 81 (218)
T ss_pred cc
Confidence 54
No 99
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=94.51 E-value=0.55 Score=33.37 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=41.7
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeC
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 76 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~ 76 (229)
.+=.+.++.|++|+..||++++++++..+..+ .+.++.++++ .+|+++.....+.+.-+
T Consensus 49 ~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~----s~~~~~~i~~-~~~~~~~~~~~~~v~~d 107 (117)
T TIGR00051 49 FVVVNINIEYKKPARLDDVLEIRTQIEELNGF----SFVFSQEIFN-EDEALLKAATVIVVCVD 107 (117)
T ss_pred EEEEEEEEEECCcccCCCEEEEEEEEEecCcE----EEEEEEEEEe-CCCcEEEeeEEEEEEEE
Confidence 45568899999999999999999999987533 2344555665 55666666655444443
No 100
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=94.11 E-value=0.58 Score=35.43 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=51.7
Q ss_pred eechhHHHHHHHHHHHHHH-c--cCCCceeeEEEEEECcCCCCCCEEEEEEEEE--CcEE---EEEEEEccCCeEEEEEE
Q 027032 148 ILHGLCTMGFAVRAIIKFI-C--RGDPNMVKNIFSRFLLHVYPGETLVTEMWLQ--GLRV---IYQVKVKERNRSALSGF 219 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~--~~~v---~~~~~~~~~g~~v~~g~ 219 (229)
..||-+++.++...-.... . +..+..-..+++.|..|..+||.|.+++.+. |..+ .++++.+.+|++...|+
T Consensus 55 ~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~gr 134 (148)
T KOG3328|consen 55 TLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGR 134 (148)
T ss_pred cccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecc
Confidence 4899999988865443311 1 2234455689999999999999999998873 3333 33455566788888886
Q ss_pred EE
Q 027032 220 VD 221 (229)
Q Consensus 220 ~~ 221 (229)
.+
T Consensus 135 ht 136 (148)
T KOG3328|consen 135 HT 136 (148)
T ss_pred eE
Confidence 54
No 101
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.05 E-value=0.67 Score=34.74 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=42.9
Q ss_pred EeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeC
Q 027032 15 HGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 76 (229)
Q Consensus 15 H~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~ 76 (229)
=.+..++|.||.+.|+ ++..+++... |+-.. +.+.++++++.+++++..+.|+++..
T Consensus 82 ti~l~i~flr~~~~g~-v~a~a~v~~~---G~~~~-v~~i~v~~~~~~~lva~~~~t~~v~~ 138 (141)
T COG2050 82 TLELNINFLRPVKEGD-VTAEARVLHL---GRRVA-VVEIEVKNDEGGRLVAKGTGTYAVLR 138 (141)
T ss_pred EEEEEehhccCCCCCe-EEEEEEEEee---CCEEE-EEEEEEEECCCCeEEEEEEEEEEEec
Confidence 3477799999999999 9999999877 33222 24555665456799999999987754
No 102
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=93.95 E-value=0.73 Score=33.16 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=33.1
Q ss_pred eeeEEEEEECcCCCCCCEEEEEEEE---ECcEEEEEEE--EccCCeE--EEEEEEEEE
Q 027032 173 MVKNIFSRFLLHVYPGETLVTEMWL---QGLRVIYQVK--VKERNRS--ALSGFVDVH 223 (229)
Q Consensus 173 ~~~~~~~rf~~Pv~~gd~l~~~~~~---~~~~v~~~~~--~~~~g~~--v~~g~~~~~ 223 (229)
.+.+.+++|++|+..||.+.+..+. ++..+.++.. .+++|+. +.+|..+..
T Consensus 45 ~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v 102 (121)
T PF13279_consen 45 VVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFEQEIFRPADGKGELAATGRTVMV 102 (121)
T ss_dssp EEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEEEEEEECSTTEEEEEEEEEEEEE
T ss_pred EEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEEEEEEEcCCCceEEEEEEEEEEE
Confidence 4468999999999999999998876 3445555443 3345655 667776543
No 103
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=93.84 E-value=0.73 Score=35.46 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=40.7
Q ss_pred eEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 18 QYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 18 ~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
.++.|.+|++.||-+.+.+++..+-..+--+.|++..+-...+.-..+.++.-+++.-+.
T Consensus 62 d~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~ 121 (157)
T COG1607 62 DSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAEDIRSGERRLATSAYFTFVAVDE 121 (157)
T ss_pred ceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEecccCCcceEeeeEEEEEEEECC
Confidence 578999999999999999999887665433333333322222344556777778777765
No 104
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=93.82 E-value=0.96 Score=32.89 Aligned_cols=52 Identities=13% Similarity=0.260 Sum_probs=40.0
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNR 69 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~ 69 (229)
..+-+-.+++|++|+.+||+|++++++..... + ++.+...++. +|+++++.+
T Consensus 75 ~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~---~-~~~~~~~~~~--~g~~v~~~~ 126 (131)
T cd00493 75 GYLAGVRKVKFRGPVLPGDTLTLEVELLKVRR---G-LGKFDGRAYV--DGKLVAEAE 126 (131)
T ss_pred EEEEEcceeEECCCcCCCCEEEEEEEEEEeeC---C-EEEEEEEEEE--CCEEEEEEE
Confidence 44555689999999999999999999887664 2 3455666664 589998887
No 105
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=93.78 E-value=1.4 Score=32.96 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=44.5
Q ss_pred eechhHHHHHHHHHH-------HHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEE------------EC--cEEEEEE
Q 027032 148 ILHGLCTMGFAVRAI-------IKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL------------QG--LRVIYQV 206 (229)
Q Consensus 148 i~hG~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~------------~~--~~v~~~~ 206 (229)
++||-..++++.-+. ......+......+.+++|.+|+.-+-..++++.. .+ ..+.+++
T Consensus 39 ~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~ 118 (138)
T TIGR02447 39 TMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGDPVANCEAPDLESWEAFLATLQRGGKARVKLEA 118 (138)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCCeEEEEEcCCHHHHHHHHHHHHhCCceEEEEEE
Confidence 588888777774221 11111111234467999999999864333444421 12 2445666
Q ss_pred EEccCCeEEEEEEEEEEe
Q 027032 207 KVKERNRSALSGFVDVHR 224 (229)
Q Consensus 207 ~~~~~g~~v~~g~~~~~~ 224 (229)
.+.++|+++..++.++.-
T Consensus 119 ~v~~~~~lvA~~~g~~~~ 136 (138)
T TIGR02447 119 QISSDGKLAATFSGEYVA 136 (138)
T ss_pred EEEECCEEEEEEEEEEEE
Confidence 655678888888877654
No 106
>PRK10254 thioesterase; Provisional
Probab=93.73 E-value=1.2 Score=33.56 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=44.2
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeC
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 76 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~ 76 (229)
..+=.+-.+.|++|...| .|++++++.. +|+-. ...+.++++ ++|++++..+.|..+.+
T Consensus 79 ~~vTiel~in~Lrp~~~g-~l~a~a~vi~---~Gr~~-~v~~~~v~d-~~g~l~a~~~~t~~i~~ 137 (137)
T PRK10254 79 CVVGTELNATHHRPVSEG-KVRGVCQPLH---LGRQN-QSWEIVVFD-EQGRRCCTCRLGTAVLG 137 (137)
T ss_pred eEEEEEEEeEEeccCcCC-eEEEEEEEEe---cCcCE-EEEEEEEEc-CCCCEEEEEEEEEEEeC
Confidence 467778899999999877 6888888543 34433 345667785 78999999999987653
No 107
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=93.38 E-value=0.7 Score=41.85 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=44.2
Q ss_pred eEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027032 14 LHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 75 (229)
Q Consensus 14 vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r 75 (229)
+=+-.+++|++|+.+||.|++++++..... ++ ++.++.+++ ++|++|++.+..+++.
T Consensus 404 LlgI~kvKF~~PV~PGDtL~I~veI~~~~~--~g-iv~f~g~~~--vdGelVaeael~~~v~ 460 (464)
T PRK13188 404 FMKIDKVKFRQKVVPGDTLIFKVELLSPIR--RG-ICQMQGKAY--VNGKLVCEAELMAQIV 460 (464)
T ss_pred EEeccEEEEcCCCCCCCEEEEEEEEEEEec--CC-EEEEEEEEE--ECCEEEEEEEEEEEEe
Confidence 334469999999999999999999887443 23 345566665 4899999999998765
No 108
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.17 E-value=0.72 Score=42.23 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=48.5
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
..+=.+.+++|++|++.||++++++++.++..+ .+.++.++++ .+|+++++..++.+.-+.
T Consensus 395 ~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~----s~~~~~~i~~-~~g~l~A~g~~~~v~vD~ 455 (495)
T PRK07531 395 SYYTVETHIRHLGEAKAGQALHVETQLLSGDEK----RLHLFHTLYD-AGGELIATAEHMLLHVDL 455 (495)
T ss_pred cEEEEEEEEEEcccCCCCCEEEEEEEEEecCCc----EEEEEEEEEC-CCCcEEEEEEEEEEEEEC
Confidence 345578999999999999999999999877543 3355666774 689999999999888654
No 109
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=93.14 E-value=0.31 Score=35.57 Aligned_cols=42 Identities=7% Similarity=0.098 Sum_probs=31.5
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIE 53 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~ 53 (229)
...-...+++|.+|+.+||+|+++.++.+..+..+...+++.
T Consensus 75 ~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~ 116 (122)
T PF01575_consen 75 PARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVT 116 (122)
T ss_dssp CEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEE
Confidence 356678999999999999999999999998887644433433
No 110
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=92.96 E-value=0.74 Score=31.67 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=42.2
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
...-.+..+.|++|...++.+..++++.. .|++. ...+.++++ ++|+++++...+++
T Consensus 42 ~~~t~~~~i~F~~~~~~~~~~~~~~~~~~---~g~~~-~~~~~~i~~-~~G~lva~~~~~~~ 98 (99)
T cd00556 42 GFASLDHHIYFHRPGDADEWLLYEVESLR---DGRSR-ALRRGRAYQ-RDGKLVASATQSFL 98 (99)
T ss_pred CeeeeEEEEEEcCCCCCCccEEEEEEecc---cCCCc-eEEEEEEEC-CCCcEEEEEEEeEc
Confidence 35667889999999999999888877643 23443 344666774 67999999988764
No 111
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=92.88 E-value=1.3 Score=31.42 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=32.0
Q ss_pred ceeeEEEEEECcCCCCCCEEEEEEEEEC---cEEEEEEE-EccCCeEEEEE
Q 027032 172 NMVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVK-VKERNRSALSG 218 (229)
Q Consensus 172 ~~~~~~~~rf~~Pv~~gd~l~~~~~~~~---~~v~~~~~-~~~~g~~v~~g 218 (229)
..+.+.+++|.+|+..||++.++.+..+ ..+.+... .+++++.+..+
T Consensus 49 ~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 99 (117)
T TIGR00051 49 FVVVNINIEYKKPARLDDVLEIRTQIEELNGFSFVFSQEIFNEDEALLKAA 99 (117)
T ss_pred EEEEEEEEEECCcccCCCEEEEEEEEEecCcEEEEEEEEEEeCCCcEEEee
Confidence 3457899999999999999999999843 23444333 24445544433
No 112
>PRK10694 acyl-CoA esterase; Provisional
Probab=92.74 E-value=1 Score=33.59 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=37.5
Q ss_pred eEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEE-ECCCC--cEEEEEEEEEEEeCc
Q 027032 18 QYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSY-NAESG--ELLCMNRMTAFLRGA 77 (229)
Q Consensus 18 ~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~-~~~~g--~~v~~~~~t~~~r~~ 77 (229)
..+.|++|++.||.+++.+++..+..+.--+.+.+..+-. .+..| .++.+...|++.-+.
T Consensus 60 d~i~F~~Pv~~Gd~l~~~a~V~~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~ 122 (133)
T PRK10694 60 EGMTFLRPVAVGDVVCCYARCVKTGTTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVDP 122 (133)
T ss_pred CceEECCCcccCcEEEEEEEEEEccCceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECC
Confidence 3679999999999999999997776654222222221111 11113 346677778777654
No 113
>PLN02322 acyl-CoA thioesterase
Probab=92.64 E-value=1.7 Score=33.40 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=42.9
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEEC----C-CCcEEEEEEEEEEEe
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNA----E-SGELLCMNRMTAFLR 75 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~----~-~g~~v~~~~~t~~~r 75 (229)
..+=.+-.+.|++|.+.|+.|+.++++.. .|+- +...+.++++. + +|.+++..+.|+.+.
T Consensus 70 ~~vTiel~infLrpa~~G~~L~Aea~vv~---~Gr~-~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 70 RVAGIQLSINHLKSADLGDLVFAEATPVS---TGKT-IQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred ceEEEEEEEEEeccCCCCCEEEEEEEEEe---cCCC-EEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 45777889999999999999999997653 2332 22445556641 1 378999999998654
No 114
>PRK10293 acyl-CoA esterase; Provisional
Probab=92.43 E-value=2.1 Score=32.06 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=42.5
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
..+=.+-++.|.+|.+.| .|++++++.. .|+- +...+.++++ ++|++++..+.|+.+
T Consensus 79 ~~vTiel~infl~p~~~g-~l~a~a~vv~---~Gr~-~~~~~~~v~d-~~g~l~A~~~~t~~i 135 (136)
T PRK10293 79 KVVGLEINANHVRSAREG-RVRGVCKPLH---LGSR-HQVWQIEIFD-EKGRLCCSSRLTTAI 135 (136)
T ss_pred eEEEEEEEeEEecccCCc-eEEEEEEEEe---cCCC-EEEEEEEEEe-CCCCEEEEEEEEEEE
Confidence 356778899999999887 6888886543 3332 3355667786 789999999998764
No 115
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=90.76 E-value=1.3 Score=32.46 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=32.3
Q ss_pred eEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEE
Q 027032 14 LHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMN 68 (229)
Q Consensus 14 vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~ 68 (229)
.-...+++|.+|+.+||.|+++.+.. + + .++++.... ++|+++++.
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~~-----~-~-~v~~~~~~~--~~g~~v~~g 116 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWKE-----G-N-RVIFQTKVV--ERDVVVLSN 116 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEEe-----C-C-EEEEEEEEc--cCCcEEEEC
Confidence 34567999999999999999988732 2 2 446665554 467776654
No 116
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=90.75 E-value=1 Score=33.79 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=41.7
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeE----------EEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAG----------LHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 75 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~----------v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r 75 (229)
...|=.+.+++|++|...+ +..++++.+ +..+|+.. +..+.++++ +|+++++.+.++++.
T Consensus 68 ~~~vt~~~~i~yl~P~~~~--~~a~~~~~~~~~~~~~~~~l~~~gr~~-~~~~~~v~~--~~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 68 GDIVIADSHIRYLAPVTGD--PVANCEAPDLESWEAFLATLQRGGKAR-VKLEAQISS--DGKLAATFSGEYVAL 137 (138)
T ss_pred CcEEEEEeeeEEcCCcCCC--eEEEEEcCCHHHHHHHHHHHHhCCceE-EEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 3567778999999999764 666666633 34455655 345556664 679999999998753
No 117
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=90.25 E-value=2.2 Score=36.08 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=50.0
Q ss_pred CCCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 9 DPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 9 ~~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
+-.++.-..+.+.||||.+.+|-+.+..+.-+... ++|. ++.++++ ++|++++...+..+.|..
T Consensus 222 ~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~-~rgl---~~G~lf~-r~G~LiA~~~QEG~~r~~ 285 (289)
T COG1946 222 PGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASG-GRGL---VRGQLFD-RDGQLIASVVQEGLIRYH 285 (289)
T ss_pred CcceEeeccceEEEeccccCCCEEEEEeeCCcccC-Ccce---eeeEEEc-CCCCEEEEEeeeEEEecc
Confidence 56678888999999999999999888776655543 2344 2556775 899999999999888854
No 118
>PLN02868 acyl-CoA thioesterase family protein
Probab=90.23 E-value=2.4 Score=37.86 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=57.7
Q ss_pred ceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEE--ECcEE-EEEEEEccCCeEEEEEEEEEE
Q 027032 147 PILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGLRV-IYQVKVKERNRSALSGFVDVH 223 (229)
Q Consensus 147 ~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~--~~~~v-~~~~~~~~~g~~v~~g~~~~~ 223 (229)
.-++|-+++|.++.+..... .+...+..+.+.|.+|-.++..+.+++++ +|..+ ...+...|+|++++.+.+++.
T Consensus 158 ~~~fGG~~~aqal~Aa~~~~--~~~~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q~g~~~~~~~~sf~ 235 (413)
T PLN02868 158 GKVFGGQLVGQALAAASKTV--DPLKLVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQKGKVIFTLFASFQ 235 (413)
T ss_pred ccccchHHHHHHHHHHHccC--CCCCCceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEECCeeEEEEeeccc
Confidence 34899999999887776654 23455689999999888888778887776 44333 344556789999999988876
Q ss_pred ecCC
Q 027032 224 RLAS 227 (229)
Q Consensus 224 ~~~~ 227 (229)
..++
T Consensus 236 ~~~~ 239 (413)
T PLN02868 236 KEEQ 239 (413)
T ss_pred cCCC
Confidence 6543
No 119
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=89.40 E-value=5.4 Score=31.18 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=43.2
Q ss_pred eeEeceEEEEEccCCCCCE-EEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 13 LLHGQQYMELYKPFPSSAS-IRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~-l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
.+-+...++|++++.+|++ ++.+.++..+....++. +..+..++. +|+++++.+..-+
T Consensus 105 ~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~-~~~~~~i~v--~g~~va~a~~~~l 163 (172)
T PRK05174 105 RALGVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVM-GIADGRVLV--DGEEIYTAKDLKV 163 (172)
T ss_pred EEeeccEEEECccCcCCCEEEEEEEEEEEEecCCCCE-EEEEEEEEE--CCEEEEEEEeeEE
Confidence 3445678999999999998 89999999886533333 456666664 7999998866544
No 120
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.09 E-value=3.6 Score=37.73 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=38.4
Q ss_pred eeeEEEEEECcCCCCCCEEEEEEEEEC---cEEEEEEE-EccCCeEEEEEEEEEEe
Q 027032 173 MVKNIFSRFLLHVYPGETLVTEMWLQG---LRVIYQVK-VKERNRSALSGFVDVHR 224 (229)
Q Consensus 173 ~~~~~~~rf~~Pv~~gd~l~~~~~~~~---~~v~~~~~-~~~~g~~v~~g~~~~~~ 224 (229)
.+.+.+++|.+|+..||+++++.++.+ ..+.++.. .+.+|+++.+|+.+...
T Consensus 397 vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~s~~~~~~i~~~~g~l~A~g~~~~v~ 452 (495)
T PRK07531 397 YTVETHIRHLGEAKAGQALHVETQLLSGDEKRLHLFHTLYDAGGELIATAEHMLLH 452 (495)
T ss_pred EEEEEEEEEcccCCCCCEEEEEEEEEecCCcEEEEEEEEECCCCcEEEEEEEEEEE
Confidence 446899999999999999999998743 24444433 25678888888876543
No 121
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=87.40 E-value=8.4 Score=28.75 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=42.2
Q ss_pred CceeEeceEEEEEccCCC-CCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 11 RLLLHGQQYMELYKPFPS-SASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~-g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
.+.+=+-..++|++|..+ ||.|++.+++..... ++ +..++.+++ .+|+++++.+.+++.
T Consensus 77 ~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~--~~-~~~~~~~~~--v~~~~va~a~l~~~~ 136 (138)
T cd01289 77 PGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGD--SG-LGVFECTIE--DQGGVLASGRLNVYQ 136 (138)
T ss_pred cEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCC--Cc-EEEEEEEEE--ECCEEEEEEEEEEEc
Confidence 345566689999999755 999999888766553 22 234455555 368999999988764
No 122
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=86.82 E-value=5.2 Score=33.29 Aligned_cols=60 Identities=12% Similarity=0.220 Sum_probs=43.4
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 75 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r 75 (229)
....-.++.+.||+|++.++-+..+++-... ..|+|. .+.++++ .+|++|++..+..+.|
T Consensus 212 ~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~-~~Grg~---~~~~l~d-~~G~lvAs~~Qe~l~r 271 (271)
T TIGR00189 212 SMAASLDHSIWFHRPFRADDWLLYKCSSPSA-SGSRGL---VEGKIFT-RDGVLIASTVQEGLVR 271 (271)
T ss_pred cEEEeeeeeEEEeCCCCCCeeEEEEEEeccc-cCCceE---EEEEEEC-CCCCEEEEEEeeeecC
Confidence 4456788999999998888877776654433 223444 2457785 8999999999987654
No 123
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=86.77 E-value=6.2 Score=30.74 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=40.9
Q ss_pred eEeceEEEEEccCCCCCEE-EEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEE
Q 027032 14 LHGQQYMELYKPFPSSASI-RNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTA 72 (229)
Q Consensus 14 vH~~~~~~~~~Pl~~g~~l-~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~ 72 (229)
+=+-.+++|++|+.+||++ +.+.++..+....++ +..++.+++. +|+++++.+.--
T Consensus 103 l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~-~~~~~~~i~v--~g~~va~a~~~~ 159 (169)
T TIGR01749 103 ALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRRLV-MGIADGEVLV--DGRLIYTASDLR 159 (169)
T ss_pred EeeccEEEEccCEecCCeEEEEEEEEEEEeecCCc-EEEEEEEEEE--CCEEEEEEECCE
Confidence 3345699999999999997 899998887665444 3355666664 789998866543
No 124
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=86.33 E-value=3.9 Score=30.30 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=35.4
Q ss_pred eEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 14 LHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 14 vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
+=-+-+++|++| ....++.++++.. .+.+.....++++.++| .+|+.|++.+.|..
T Consensus 76 ~~k~~~i~f~kp--a~g~v~a~~~~~~-e~~~~~~~~~~~v~i~D-~~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 76 WDKSAEIDFLKP--ARGDVTATAELTE-EQIGERGELTVPVEITD-ADGEVVAEATITWY 131 (132)
T ss_dssp EEEEEEEEE-S-----S-EEEEEE-TC-CHCCHEEEEEEEEEEEE-TTC-EEEEEEEEEE
T ss_pred EEEeeEEEEEec--cCCcEEEEEEcCH-HHhCCCcEEEEEEEEEE-CCCCEEEEEEEEEE
Confidence 345788999998 5677888888877 22232344677888886 89999999988864
No 125
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=86.33 E-value=4.6 Score=34.21 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=43.4
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEeC
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRG 76 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r~ 76 (229)
..-..+.|.||+|.+.+|-+..+.+-... ..|+|. .+.++++ ++|++|++..+..+.|.
T Consensus 226 ~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a-~~gr~~---~~g~i~~-~~G~LvAs~~Qegl~r~ 284 (286)
T PRK10526 226 IATIDHSMWFHRPFNLNEWLLYSVESTSA-SSARGF---VRGEFYT-QDGVLVASTVQEGVMRN 284 (286)
T ss_pred EEeeeEeEEEeCCCCCCceEEEEEECCcc-cCCceE---EEEEEEC-CCCCEEEEEEeeEEEEe
Confidence 45778999999999998888776554333 123443 2446785 89999999999988874
No 126
>PLN02647 acyl-CoA thioesterase
Probab=86.32 E-value=6.3 Score=35.57 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=41.9
Q ss_pred ceEEEEEccCCCCCEEEEEEEEeEEEEcCCe---EEEEEEEEEEEC--CCCcEEEEEEEEEEEeCc
Q 027032 17 QQYMELYKPFPSSASIRNEACIAGLHDKGKA---AILEIETKSYNA--ESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 17 ~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g---~~v~~~~~~~~~--~~g~~v~~~~~t~~~r~~ 77 (229)
-.++.|.+|++.||-|.+.++|........| +.+.+.+...+. .+++++.+...|++..+.
T Consensus 338 vd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~ 403 (437)
T PLN02647 338 VDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPE 403 (437)
T ss_pred ecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEecc
Confidence 3578999999999999999999988765432 333444443332 235667777888776654
No 127
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=86.21 E-value=8.9 Score=28.80 Aligned_cols=44 Identities=5% Similarity=0.063 Sum_probs=31.3
Q ss_pred ceEEEEEccCCCC-C----EEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCc
Q 027032 17 QQYMELYKPFPSS-A----SIRNEACIAGLHDKGKAAILEIETKSYNAESGE 63 (229)
Q Consensus 17 ~~~~~~~~Pl~~g-~----~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~ 63 (229)
+.+++|.+|+.+| | +++++.+|.++.+ +++ .+++...+.. ++++
T Consensus 82 ~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~-~~~-~v~~~~~~~~-~~~~ 130 (142)
T PRK13693 82 EYNVRFTAVVPVPNDGKGAELVFNGRVKSVDP-ESK-SVTIALTATT-GGKK 130 (142)
T ss_pred EEEEEecccEECCCCccceEEEEEEEEEEecc-CCc-EEEEEEEEEE-CCcE
Confidence 5799999999864 4 9999999999864 333 3566666663 4444
No 128
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=84.50 E-value=14 Score=28.06 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=42.6
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
.....+-+...|.+|+.+||.+....++...+...-+. ...+.+ .+|++++++....+.
T Consensus 85 ~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~---~~~~a~--Vdg~~v~~a~~~~~~ 143 (147)
T COG0764 85 LGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGK---AKGVAT--VDGKVVAEAELLFAG 143 (147)
T ss_pred EEEEEEecceeecCccCCCCEEEEEEEEEEecccceEE---EEEEEE--ECCEEEEEEEEEEEE
Confidence 44577788999999999999988888877665443333 233333 479998888876554
No 129
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=83.01 E-value=8.9 Score=27.07 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=38.3
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
....=..+.+.||+|....+-+..+.+.... +.|. ...+.++++ ++|++|++..+..+
T Consensus 46 ~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~---~~gr-~~~~~~l~~-~~G~LvAs~~Q~~l 103 (104)
T cd03444 46 SASASLDHAIWFHRPFRADDWLLYEQRSPRA---GNGR-GLVEGRIFT-RDGELVASVAQEGL 103 (104)
T ss_pred cceEeeeEEEEEeCCCCCCceEEEEEECccc---cCCe-eEEEEEEEC-CCCCEEEEEEEeee
Confidence 4566778999999998876544444332222 2233 234667885 79999999988754
No 130
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=82.38 E-value=16 Score=27.74 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=48.0
Q ss_pred CCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCe-EEEEEEEEEEECCCCcEEEEEEEEEEEeCc
Q 027032 10 PRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKA-AILEIETKSYNAESGELLCMNRMTAFLRGA 77 (229)
Q Consensus 10 ~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g-~~v~~~~~~~~~~~g~~v~~~~~t~~~r~~ 77 (229)
..+.|-.+-++.|..|-+.||.|.+++++..+ |+. .++.++ ++...+|+..+..+.+.+.+..
T Consensus 79 ~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~---Gk~la~t~v~--l~~K~t~kiia~grhtk~~~~~ 142 (148)
T KOG3328|consen 79 FKPGVSVDLSVSYLSSAKLGEELEIEATVVRV---GKTLAFTDVE--LRRKSTGKIIAKGRHTKYFRPA 142 (148)
T ss_pred CCCceEEEEEhhhccccCCCCeEEEEEEEeec---CceEEEEEEE--EEEcCCCeEEEecceEEEeecC
Confidence 45567778889999999999999999988754 443 344444 4444689999999999888765
No 131
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=79.01 E-value=12 Score=27.95 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=33.9
Q ss_pred EeceEEEEEccCCCCCEEEEEEEEeEEEEc-CCeEEEEEEEEEEECCCCcEEEEEEEE
Q 027032 15 HGQQYMELYKPFPSSASIRNEACIAGLHDK-GKAAILEIETKSYNAESGELLCMNRMT 71 (229)
Q Consensus 15 H~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~-g~g~~v~~~~~~~~~~~g~~v~~~~~t 71 (229)
-..+++-||||.+.+|.|.... ++.... ++|.. +.+++++++|++|++..+.
T Consensus 77 SlDHs~wFHrpfr~ddWlLY~~--~sp~A~~~Rgl~---~G~~f~~q~G~Lvas~~QE 129 (131)
T PF02551_consen 77 SLDHSMWFHRPFRADDWLLYAI--ESPSASGGRGLV---RGRFFDTQDGELVASVVQE 129 (131)
T ss_dssp EEEEEEEE-S--BTTS-EEEEE--EEEEEETTEEEE---EECCEEECTTEEEEEEEEE
T ss_pred ecceeEEEcCCCCCCCCEEEEE--EcCccccCcccc---cCceEecCCCCEEEEEecC
Confidence 6679999999999999877653 444444 45652 4456634899999997764
No 132
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=76.17 E-value=28 Score=25.48 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=36.0
Q ss_pred eeeEEEEEECcCCCCCCEEEEEEEEE------C--cEEEEEEEEccCCeEEEEEEEEE
Q 027032 173 MVKNIFSRFLLHVYPGETLVTEMWLQ------G--LRVIYQVKVKERNRSALSGFVDV 222 (229)
Q Consensus 173 ~~~~~~~rf~~Pv~~gd~l~~~~~~~------~--~~v~~~~~~~~~g~~v~~g~~~~ 222 (229)
.+.+++++|.+++.....+.+++... + ....+++.+.|+|+++.++++++
T Consensus 73 ~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q~g~~~a~~~~~~ 130 (132)
T PF03756_consen 73 VLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQGGRVVATASMTF 130 (132)
T ss_pred EEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEECCEEEEEEEEEE
Confidence 34689999999997666666666541 1 13556666779999999988875
No 133
>PLN02370 acyl-ACP thioesterase
Probab=75.81 E-value=29 Score=31.24 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=37.4
Q ss_pred eeeEEEEEECcCCCCCCEEEEEEEEEC--c---EEEEEEEEccCCeEEEEEEEEE
Q 027032 173 MVKNIFSRFLLHVYPGETLVTEMWLQG--L---RVIYQVKVKERNRSALSGFVDV 222 (229)
Q Consensus 173 ~~~~~~~rf~~Pv~~gd~l~~~~~~~~--~---~v~~~~~~~~~g~~v~~g~~~~ 222 (229)
.+.++.++|.+|...||+|++..|..+ + ...|++...++|+++..+..+.
T Consensus 198 VLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvW 252 (419)
T PLN02370 198 VVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLTRASSVW 252 (419)
T ss_pred EEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEE
Confidence 346899999999999999999999843 2 2234444344799988887654
No 134
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=71.19 E-value=17 Score=27.51 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=30.4
Q ss_pred eEEEEEECcCCCCCCEEEEEEEE-----ECcEEEEEEEEccCCe
Q 027032 175 KNIFSRFLLHVYPGETLVTEMWL-----QGLRVIYQVKVKERNR 213 (229)
Q Consensus 175 ~~~~~rf~~Pv~~gd~l~~~~~~-----~~~~v~~~~~~~~~g~ 213 (229)
..+++.|..||.+|+++++.+.. .+|.+.|.+.+...|+
T Consensus 89 ~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 89 RTITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 57999999999999999999854 3477888877543443
No 135
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=67.43 E-value=40 Score=28.61 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=55.6
Q ss_pred CceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEE--ECcEE-EEEEEEccCCeEEEEEEEEE
Q 027032 146 RPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWL--QGLRV-IYQVKVKERNRSALSGFVDV 222 (229)
Q Consensus 146 ~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~--~~~~v-~~~~~~~~~g~~v~~g~~~~ 222 (229)
..-+.|-.+.+-+..+..... .+...+.++..-|.+|.-+-+.+...++. +|+.+ .-+|.+-|+|++++...|.+
T Consensus 31 ~~~vFGGqvvaQAL~Aa~~TV--~~~r~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~aiQ~g~~If~~~ASF 108 (289)
T COG1946 31 LRRVFGGQVVAQALVAALRTV--PEDRVVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAIQHGKLIFSATASF 108 (289)
T ss_pred CccccccchHHHHHHHHHhhc--CCCCCcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEEECCEEEEEEEeec
Confidence 345778777777766666554 22334467888999999999999988886 44433 33455679999999999887
Q ss_pred EecC
Q 027032 223 HRLA 226 (229)
Q Consensus 223 ~~~~ 226 (229)
....
T Consensus 109 ~~~e 112 (289)
T COG1946 109 QVPE 112 (289)
T ss_pred cCCC
Confidence 6543
No 136
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=62.38 E-value=71 Score=26.41 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=40.4
Q ss_pred eeEeceEEEEEc-cCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027032 13 LLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 75 (229)
Q Consensus 13 ~vH~~~~~~~~~-Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r 75 (229)
+-..=.++.+++ |.+.++++.+.+++ ...+.. .++....+++ ++|+++++...-.+.+
T Consensus 230 lP~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~dv~v~d-~~G~~~~~~~gl~~~~ 288 (295)
T PF14765_consen 230 LPVSIERIRIFRAPPPPGDRLYVYARL---VKSDDD-TITGDVTVFD-EDGRVVAELEGLTFRR 288 (295)
T ss_dssp EEEEEEEEEESSS--SSTSEEEEEEEE---ESTTTT-EEEEEEEEEE-TTSBEEEEEEEEEEEE
T ss_pred cccEeCEEEEEeccCCCCCEEEEEEEE---ecccce-EEEEEEEEEC-CCCCEEEEEccEEEEE
Confidence 344557888884 88999999999999 332222 3466777886 8999999988866554
No 137
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=62.15 E-value=59 Score=23.70 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=40.9
Q ss_pred ceeEeceEEEEEccCCCCCEEEEEEEEeEEEEc-CCeEEEEEEEEEEECCCCcEEEEEEEEE
Q 027032 12 LLLHGQQYMELYKPFPSSASIRNEACIAGLHDK-GKAAILEIETKSYNAESGELLCMNRMTA 72 (229)
Q Consensus 12 ~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~-g~g~~v~~~~~~~~~~~g~~v~~~~~t~ 72 (229)
..+-.+-+++|.+++....++.++..+..-..+ ++..-..++..++ ++|+++++...++
T Consensus 71 ~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~--q~g~~~a~~~~~~ 130 (132)
T PF03756_consen 71 QFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVS--QGGRVVATASMTF 130 (132)
T ss_pred eEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEE--ECCEEEEEEEEEE
Confidence 366678899999988777777777777655444 3222334555555 6899999988764
No 138
>PLN02868 acyl-CoA thioesterase family protein
Probab=60.81 E-value=29 Score=30.90 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=39.3
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
..-..+.+.||+|+..+|-+..+.+-... ..|++. .+.++++ .+|++|++..+..+
T Consensus 357 ~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a-~~gr~~---~~g~l~~-~~G~LvAs~~Qe~l 412 (413)
T PLN02868 357 ALSLDHSMWFHRPFRADDWLLFVIVSPAA-HNGRGF---ATGHMFN-RKGELVVSLTQEAL 412 (413)
T ss_pred EEEcceeEEEecCCCCCceEEEEEECCcc-CCCcce---EEEEEEC-CCCCEEEEEEeeec
Confidence 45667899999999888877766554433 123333 2467785 89999999987643
No 139
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=59.57 E-value=75 Score=24.06 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=24.2
Q ss_pred eeeEEEEEECcCCCCCCEEEEEEEE------------ECc--EEEEEEEEccCCeEEEEEEEEE
Q 027032 173 MVKNIFSRFLLHVYPGETLVTEMWL------------QGL--RVIYQVKVKERNRSALSGFVDV 222 (229)
Q Consensus 173 ~~~~~~~rf~~Pv~~gd~l~~~~~~------------~~~--~v~~~~~~~~~g~~v~~g~~~~ 222 (229)
.+.+-++||.+||.-.=+.++.... .++ ++.+++.+..+|+.+.+-+.++
T Consensus 77 Vi~~~~i~Y~~Pv~~d~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~~~~~~a~f~G~y 140 (144)
T PF09500_consen 77 VIADSNIRYLKPVTGDFTARCSLPEPEDWERFLQTLARGGRARITLEVEIYSGGELAAEFTGRY 140 (144)
T ss_dssp EEEEEEEEE-S---S--EEEEE-------S---GGGGCTS-EEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEeCceEEcCCCCCCcEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEECCEEEEEEEEEE
Confidence 3457899999999876554444431 123 4555555556777766444444
No 140
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.33 E-value=33 Score=28.10 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=43.4
Q ss_pred hCCCCCceechhHHHHHHHHHHHHHHcc-CC--CceeeEEEEEECcCCCCCCEEEEEEEE---ECcEEEEEEE
Q 027032 141 AAGFSRPILHGLCTMGFAVRAIIKFICR-GD--PNMVKNIFSRFLLHVYPGETLVTEMWL---QGLRVIYQVK 207 (229)
Q Consensus 141 ~~G~~~~i~hG~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~rf~~Pv~~gd~l~~~~~~---~~~~v~~~~~ 207 (229)
..|+++ ++||-+.+.++..++...... .+ .+.-.+++..|..|++....+.++... .|+...+..+
T Consensus 137 L~gy~~-~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~~~Grk~~~~g~ 208 (237)
T KOG4781|consen 137 LTGYPG-LVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDKVEGRKCKTFGE 208 (237)
T ss_pred ccCCCC-ccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecchhhhcCcccceeeE
Confidence 457777 789988888888777543322 12 122257899999999999988777654 3444444333
No 141
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=58.97 E-value=97 Score=25.15 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=36.8
Q ss_pred eEeceEEEEE-ccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 14 LHGQQYMELY-KPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 14 vH~~~~~~~~-~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
.-.+..+.|+ .|...++-+.++.+-..+. .|.. ..+.++++ ++|++|++..+..++
T Consensus 199 ~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~---~Gr~-~~~~~l~d-~~G~lvA~~~Q~~lv 255 (255)
T PF13622_consen 199 ATLDHTIHFHRLPFDGDEWLLLEARSPRAG---NGRA-LMEGRLWD-EDGRLVASSRQEALV 255 (255)
T ss_dssp EEEEEEEEECSHCCTTTS-EEEEEEEEEEE---TTEE-EEEEEEEE-TTS-EEEEEEEEEE-
T ss_pred ccceeEEEEEeCCccCCceEEEEEEEeEeC---CCEE-EEEEEEEC-CCCCEEEEEEEEeeC
Confidence 4667778864 4666688888888655544 2332 34667886 899999999998653
No 142
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=57.45 E-value=87 Score=25.93 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=33.0
Q ss_pred eeeEEEEEECcCCCCCCEEEEEEEEEC--c---EEEEEEEEccCCeEEEEEEEEE
Q 027032 173 MVKNIFSRFLLHVYPGETLVTEMWLQG--L---RVIYQVKVKERNRSALSGFVDV 222 (229)
Q Consensus 173 ~~~~~~~rf~~Pv~~gd~l~~~~~~~~--~---~v~~~~~~~~~g~~v~~g~~~~ 222 (229)
.+.++.+++.++-..||+|+++.|..+ + .-.|++...++|+++..+....
T Consensus 62 vl~r~~i~i~r~P~~~e~i~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~W 116 (261)
T PF01643_consen 62 VLSRYQIEIHRYPRWGEKITIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIW 116 (261)
T ss_dssp EEEEEEEEESS--BTT-EEEEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEE
T ss_pred EEEEEEEEEEecCCCCCEEEEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEE
Confidence 346899999999999999999999854 2 2344555337899988887654
No 143
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=55.02 E-value=91 Score=23.61 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=34.3
Q ss_pred CceeEeceEEEEEccCCCCCEEEEEEEEe---EEE---E----cCCeEEEEEEEEEEECCCCcEEEEEEEEEEE
Q 027032 11 RLLLHGQQYMELYKPFPSSASIRNEACIA---GLH---D----KGKAAILEIETKSYNAESGELLCMNRMTAFL 74 (229)
Q Consensus 11 ~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~---~v~---~----~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~ 74 (229)
-.+|=.+.+++|++|+.-. ++.++++. ++. + +||+ -++++++++. +|+.+++-+..|+.
T Consensus 74 ~~IVi~~~~i~Y~~Pv~~d--~~A~~~~~~~~~~~~~~~~l~~~gra-ri~l~~~i~~--~~~~~a~f~G~yv~ 142 (144)
T PF09500_consen 74 GDIVIADSNIRYLKPVTGD--FTARCSLPEPEDWERFLQTLARGGRA-RITLEVEIYS--GGELAAEFTGRYVA 142 (144)
T ss_dssp -EEEEEEEEEEE-S---S----EEEEE-------S---GGGGCTS-E-EEEEEEEEEE--TTEEEEEEEEEEEE
T ss_pred CcEEEEeCceEEcCCCCCC--cEEEEeccccchhHHHHHHHHcCCcE-EEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 3477889999999999766 55555555 221 1 1334 4577888885 78889998888875
No 144
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=53.82 E-value=1.3e+02 Score=25.60 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=51.7
Q ss_pred eechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCCCCCEEEEEEEEE--CcEEEEE-EEEccCCeEEEEEEEEEEe
Q 027032 148 ILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQ--GLRVIYQ-VKVKERNRSALSGFVDVHR 224 (229)
Q Consensus 148 i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~~gd~l~~~~~~~--~~~v~~~-~~~~~~g~~v~~g~~~~~~ 224 (229)
-+.|...++-++.+..... .+.-....+.+-|.+-.-+...+...+..- |..+..+ +.+-|+|+++....+.+.+
T Consensus 39 ~~fGG~i~sQaLaAA~~TV--~e~f~p~SlH~YFI~~gd~~~pI~Y~V~rirdGr~F~~R~V~AvQ~~k~If~~qiSF~~ 116 (294)
T KOG3016|consen 39 HAYGGQIASQALAAASKTV--EEMFIPHSLHCYFILVGDPNIPIIYDVKRIRDGRNFATRSVDAVQKGKTIFTLQISFQQ 116 (294)
T ss_pred ccccceehHHHHHHHHhcc--ccccccceeeeeeeecCCCCCceEEEeeeecCCceeEEEEEEEEECCeEEEEEEEEEcc
Confidence 3555555555544444443 233444689999999999999998888763 3333222 3356899999999999985
Q ss_pred cCC
Q 027032 225 LAS 227 (229)
Q Consensus 225 ~~~ 227 (229)
.+.
T Consensus 117 ~~k 119 (294)
T KOG3016|consen 117 SEK 119 (294)
T ss_pred ccC
Confidence 443
No 145
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=53.47 E-value=87 Score=22.96 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=26.9
Q ss_pred eeEEEEEECcCCCCCCEEEEEEEEE------CcEEEEEEEE-ccCCeEEEEEEEEE
Q 027032 174 VKNIFSRFLLHVYPGETLVTEMWLQ------GLRVIYQVKV-KERNRSALSGFVDV 222 (229)
Q Consensus 174 ~~~~~~rf~~Pv~~gd~l~~~~~~~------~~~v~~~~~~-~~~g~~v~~g~~~~ 222 (229)
.+..+++|.+| .-..+++.+..+ +....+.+.+ +.+|+.|..++.++
T Consensus 77 ~k~~~i~f~kp--a~g~v~a~~~~~~e~~~~~~~~~~~v~i~D~~G~~Va~~~~t~ 130 (132)
T PF14539_consen 77 DKSAEIDFLKP--ARGDVTATAELTEEQIGERGELTVPVEITDADGEVVAEATITW 130 (132)
T ss_dssp EEEEEEEE-S-----S-EEEEEE-TCCHCCHEEEEEEEEEEEETTC-EEEEEEEEE
T ss_pred EEeeEEEEEec--cCCcEEEEEEcCHHHhCCCcEEEEEEEEEECCCCEEEEEEEEE
Confidence 46899999999 344556666552 1234444443 78899998888775
No 146
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=50.09 E-value=58 Score=22.26 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=24.1
Q ss_pred EECcCCC-CCCEEEEEEEE--EC--------cEEEEEEEEccCCeEEEEEEE
Q 027032 180 RFLLHVY-PGETLVTEMWL--QG--------LRVIYQVKVKERNRSALSGFV 220 (229)
Q Consensus 180 rf~~Pv~-~gd~l~~~~~~--~~--------~~v~~~~~~~~~g~~v~~g~~ 220 (229)
.--+|+| |||++.+++.. .+ ..+.+.+. +.+|..+.....
T Consensus 5 ~TDr~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~-dp~g~~v~~~~~ 55 (99)
T PF01835_consen 5 QTDRPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIK-DPSGNEVFRWSV 55 (99)
T ss_dssp EESSSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEE-ETTSEEEEEEEE
T ss_pred ECCccCcCCCCEEEEEEEEeccccccccccCCceEEEEE-CCCCCEEEEEEe
Confidence 3457888 99999888774 22 13333333 456776655544
No 147
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=37.82 E-value=1.9e+02 Score=22.26 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCceeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCe---EEEEEEEEEEECCCCc
Q 027032 10 PRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKA---AILEIETKSYNAESGE 63 (229)
Q Consensus 10 ~~~~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g---~~v~~~~~~~~~~~g~ 63 (229)
|+.++=.+-.-+|.|||.+ .+.+-+..+.+++.+++. +++.+..+.+|++.|+
T Consensus 93 LsdilI~~~~S~Frr~i~~-~~F~g~~~~~~~~~~~~~~~~l~l~t~~~F~D~~GG~ 148 (157)
T PF10862_consen 93 LSDILITSFKSRFRRPINP-RHFSGELEVTDMRVRDRTWPYLFLSTECRFWDDDGGR 148 (157)
T ss_dssp HHHEEEEEE-EEE-S---T-TSEEEEEEEE--EEE-SSS-EEEEEEEEEEE-----E
T ss_pred cCceeEeechhhhhcccCc-ceEEEEEEEEEEEEeccCCceEEEeeEEEEEeCCCCc
Confidence 4556777888899999975 457777788888888777 7788888888644344
No 148
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=33.87 E-value=2.7e+02 Score=22.88 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=46.0
Q ss_pred CCCceechhHHHHHHHHHHHHHHccCCCceeeEEEEEECcCCC--CCCEEEEEEEE--E-Cc----EEEEEEEE-ccCC-
Q 027032 144 FSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVY--PGETLVTEMWL--Q-GL----RVIYQVKV-KERN- 212 (229)
Q Consensus 144 ~~~~i~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~Pv~--~gd~l~~~~~~--~-~~----~v~~~~~~-~~~g- 212 (229)
.+.+|++|...+-++..++.... +.. .+.=-+++|.+|+. .++...+.+.. . ++ .+.|++.. ++.+
T Consensus 36 ~g~~i~Pga~~le~~~~Aa~~~~-~~~--~~~l~~~~~~~pl~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~s~~~~~~ 112 (295)
T PF14765_consen 36 QGQPILPGAAYLEMALEAARQLS-PSS--VVELRDLRFHRPLVLDEGEPRELRVELDPEEDGSGSMEWRFEIFSRNKDDS 112 (295)
T ss_dssp TTEEEE-HHHHHHHHHHHHHHHT-CSS--EEEEEEEEE-S-EEE-TTTEEEEEEEEEEETTTTEEEEEEEEEEEEESTCC
T ss_pred CCEeeehhHHHHHHHHHHHHHhh-Ccc--cceEEEeEecccEEecCCCcEEEEEEEEEccCCCCccceEEEEEEecCCCc
Confidence 45789999999999988776553 222 22223799999996 35665555543 4 22 24566552 3333
Q ss_pred --eEEEEEEEEEEe
Q 027032 213 --RSALSGFVDVHR 224 (229)
Q Consensus 213 --~~v~~g~~~~~~ 224 (229)
..+.+|.+.+..
T Consensus 113 ~~~~h~~g~v~~~~ 126 (295)
T PF14765_consen 113 GWTLHASGQVSLDK 126 (295)
T ss_dssp GEEEEEEEEEEEES
T ss_pred ceEEeeeeEEEeee
Confidence 566788777654
No 149
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=31.20 E-value=1.3e+02 Score=21.15 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=21.3
Q ss_pred CCCCCEEEEEEEEeEEEEcCCeEEEEE
Q 027032 26 FPSSASIRNEACIAGLHDKGKAAILEI 52 (229)
Q Consensus 26 l~~g~~l~~~~~i~~v~~~g~g~~v~~ 52 (229)
-..|+++++..+|..++..|+-.|+++
T Consensus 9 ~~~g~~V~v~Gwv~~~R~~g~~~Fi~L 35 (108)
T cd04316 9 ELDGEEVTVAGWVHEIRDLGGIKFVIL 35 (108)
T ss_pred hhCCCEEEEEEEEEeeeccCCeEEEEE
Confidence 346889999999999999887555554
No 150
>COG5496 Predicted thioesterase [General function prediction only]
Probab=24.84 E-value=2.9e+02 Score=20.48 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=41.0
Q ss_pred eeEeceEEEEEccCCCCCEEEEEEEEeEEEEcCCeEEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 027032 13 LLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLR 75 (229)
Q Consensus 13 ~vH~~~~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~~v~~~~~~~~~~~g~~v~~~~~t~~~r 75 (229)
.|=.+-.++-..|+++|.++++.+++..+.-+ .+-+.++ .. ++|+.+-+...+=++-
T Consensus 58 tVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr--~v~f~i~--a~--~~~~~Ig~g~h~R~iv 114 (130)
T COG5496 58 TVGTEVLVRHLAATPPGLTVTIGARLEKVEGR--KVKFRII--AM--EGGDKIGEGTHTRVIV 114 (130)
T ss_pred eeeEEEEeeeccCCCCCCeEEEEEEEEEEecc--EEEEEEE--Ee--eCCcEEeeeEEEEEEe
Confidence 45556677778899999999999999988755 4422333 33 4788888888775543
No 151
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=22.03 E-value=3e+02 Score=22.79 Aligned_cols=51 Identities=8% Similarity=0.134 Sum_probs=0.0
Q ss_pred eeEEEEEECcCCCCCCEEEEEEEE--ECcEEEEEEEEccCCeEEEEEEEEEEecCCC
Q 027032 174 VKNIFSRFLLHVYPGETLVTEMWL--QGLRVIYQVKVKERNRSALSGFVDVHRLASS 228 (229)
Q Consensus 174 ~~~~~~rf~~Pv~~gd~l~~~~~~--~~~~v~~~~~~~~~g~~v~~g~~~~~~~~~~ 228 (229)
..++.+++.+||.+|++|++.... .++.-.| +.+|.+..-..++-.-.+++
T Consensus 193 p~r~~l~y~keva~G~~iti~~e~~~~~s~~~f----~~d~~v~~lt~i~~d~iK~~ 245 (250)
T COG3884 193 PLRLTLEYVKEVAPGEKITIVYEVHPLESKHQF----TSDGQVNALTYIVGDEIKAA 245 (250)
T ss_pred cceeEEEEEcccCCCCeEEEEEEEcccCceeee----cCCcceEEEEEEEehhhHhH
No 152
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=21.92 E-value=2.5e+02 Score=18.60 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=8.7
Q ss_pred CCCEEEEEEEEE
Q 027032 187 PGETLVTEMWLQ 198 (229)
Q Consensus 187 ~gd~l~~~~~~~ 198 (229)
.||++++.++..
T Consensus 5 ~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 5 VGERVRFRVTSN 16 (83)
T ss_pred CCCEEEEEEEeC
Confidence 788887777663
No 153
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=21.79 E-value=1.2e+02 Score=22.27 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=22.1
Q ss_pred cCCCCCEEEEEEEEeEEEEcCCeEEEEE
Q 027032 25 PFPSSASIRNEACIAGLHDKGKAAILEI 52 (229)
Q Consensus 25 Pl~~g~~l~~~~~i~~v~~~g~g~~v~~ 52 (229)
+-..|+.+++.++|..++..|+-.|+++
T Consensus 10 ~~~~g~~V~i~Gwv~~~R~~gk~~Fi~L 37 (135)
T cd04317 10 ESHVGQEVTLCGWVQRRRDHGGLIFIDL 37 (135)
T ss_pred hhHCCCEEEEEEeEehhcccCCEEEEEE
Confidence 3456899999999999999887555554
No 154
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=20.96 E-value=1.4e+02 Score=21.15 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=24.3
Q ss_pred EEEEEccCCCCCEEEEEEEEeEEEEcCCeE
Q 027032 19 YMELYKPFPSSASIRNEACIAGLHDKGKAA 48 (229)
Q Consensus 19 ~~~~~~Pl~~g~~l~~~~~i~~v~~~g~g~ 48 (229)
.+.+-.|+..|..++++|.+.++++..+-.
T Consensus 5 ~i~~~~~l~~G~~vtv~C~v~~v~P~~~l~ 34 (99)
T cd07689 5 EILLSGPLEEGKPVTVKCEVPDVYPFDRLE 34 (99)
T ss_pred cCcccCcccCCceEEEEEEecCcccCCceE
Confidence 455667899999999999999999875543
No 155
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=20.83 E-value=3.2e+02 Score=19.90 Aligned_cols=25 Identities=4% Similarity=-0.028 Sum_probs=12.4
Q ss_pred eEEEEEEEEEEECCCCcEEEEEEEEEE
Q 027032 47 AAILEIETKSYNAESGELLCMNRMTAF 73 (229)
Q Consensus 47 g~~v~~~~~~~~~~~g~~v~~~~~t~~ 73 (229)
+..|+++....+ +....|++..++.
T Consensus 15 ~~~vtl~a~~~~--~~g~~w~S~A~f~ 39 (126)
T PF04775_consen 15 GQEVTLRARLTD--DNGVQWQSYATFR 39 (126)
T ss_dssp T-EEEEEEEEE---TTS-EEEEEEEEE
T ss_pred CCEEEEEEEEEe--CCCCEEEEEEEEE
Confidence 445566665553 3445666666643
Done!