BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027033
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 33 DYV-----IRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRL--EGEANK 85
DYV I A + K E + N D YF M + VDG +L +A+K
Sbjct: 2352 DYVTTKSYISALNWFKNEFFVDEWNIADVVANSDNNYFTMASERDVDGTFKLIELAKASK 2411
Query: 86 YTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAK 142
+ + + L +++ Y +++ ++KIE +L ++ + S Y + EE K
Sbjct: 2412 ESLKIIPLGSIENLNYAQEEIS--KSKIEGGWILLQNIQMSLSWVKTYLHKHVEETK 2466
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 94 MKTQDIGYVLQKLQSE------RNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQ 147
+ + +G +L+SE R + L T LH NNP +V D + + +
Sbjct: 323 IANESLGATASRLRSELDPASXRQRTRGLATYLH---NNPDKSNVSLTADADPSTSVXLS 379
Query: 148 SGRKDALPDFD 158
S K L D+D
Sbjct: 380 SWAKVGLWDYD 390
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 94 MKTQDIGYVLQKLQSE------RNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQ 147
+ + +G +L+SE R + L T LH NNP +V D + + +
Sbjct: 322 IANESLGATASRLRSELDPASMRQRTRGLATYLH---NNPDKSNVSLTADADPSTSVMLS 378
Query: 148 SGRKDALPDFD 158
S K L D+D
Sbjct: 379 SWAKVGLWDYD 389
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 54 KAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQ---KLQSER 110
KA NPD Y K+ + VH E E KY +E L + +Q YVL+ K +
Sbjct: 206 KAVTLNPDNSYIKVFLALKLQDVHA-EAEGEKYIEEILDQISSQP--YVLRYAAKFYRRK 262
Query: 111 NKIEKLTTML-HSLDNNPSSRHVY 133
N K +L +L+ P+S ++
Sbjct: 263 NSWNKALELLKKALEVTPTSSFLH 286
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 54 KAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQ---KLQSER 110
KA NPD Y K+ + VH E E KY +E L + +Q YVL+ K +
Sbjct: 206 KAVTLNPDNSYIKVFLALKLQDVHA-EAEGEKYIEEILDQISSQP--YVLRYAAKFYRRK 262
Query: 111 NKIEKLTTML-HSLDNNPSSRHVY 133
N K +L +L+ P+S ++
Sbjct: 263 NSWNKALELLKKALEVTPTSSFLH 286
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 453 KPYTSFQELTGEKEMAAELEELYGDI 478
>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A
pdb|3UYC|B Chain B, Designed Protein Ke59 R8_27A
Length = 249
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 77 HRLEG-EANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKL 116
H LE E NK Q +L+ M D+ V+ SERN+IE+L
Sbjct: 182 HDLETLEINKENQRKLISMVPSDVVKVVASGISERNEIEEL 222
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 473 KPYTSFQELTGEKEMAAELEELYGDI 498
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 473 KPYTSFQELTGEKEMAAELEELYGDI 498
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 112 KIEKLTTMLHSLDNNPSSR 130
K++++ +LH L NNPSSR
Sbjct: 123 KVDQVDYLLHQLKNNPSSR 141
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 112 KIEKLTTMLHSLDNNPSSR 130
K++++ +LH L NNPSSR
Sbjct: 122 KVDQVDYLLHQLKNNPSSR 140
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 449 KPYTSFQELTGEKEMAAELEELYGDI 474
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 442 KPYTSFQELTGEKEMAAELEELYGDI 467
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 23/169 (13%)
Query: 33 DYV-----IRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRL--EGEANK 85
DYV I A + K E + N + YF M + VDG +L +A+K
Sbjct: 2143 DYVTTKSYISALNWFKNEFFVDEWNIADVVANSENNYFTMASERDVDGTFKLIELAKASK 2202
Query: 86 YTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYF---------AE 136
+ + + L +++ Y +++ ++KIE +L ++ + S Y AE
Sbjct: 2203 ESLKIIPLGSIENLNYAQEEIS--KSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKAAE 2260
Query: 137 DREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQEL 185
+ E+ K + D LP ++R Y ++ G V++L
Sbjct: 2261 EHEKFKMFMTCHLTGDKLP-----APLLQRTDRVVYEDIPGILDTVKDL 2304
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 449 KPYTSFQELTGEKEMAAELEELYGDI 474
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 442 KPYTSFQELTGEKEMAAELEELYGDI 467
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 441 KPYTSFQELTGEKEMAAELEELYGDI 466
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 442 KPYTSFQELTGEKEMAAELEELYGDI 467
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 441 KPYTSFQELTGEKEMAAELEELYGDI 466
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 KTAASYRELEGRKKRVQELEKLYMDM 192
K S++EL G K+ ELE+LY D+
Sbjct: 441 KPYTSFQELTGEKEMAAELEELYGDI 466
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 9 PRRAHKERAQPQSRKKFGLLEKHKDYVIR 37
P E+ QP+ R FG++ K ++Y+++
Sbjct: 338 PSEETPEKPQPRRRSSFGIMIKAEEYILK 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,902,193
Number of Sequences: 62578
Number of extensions: 218021
Number of successful extensions: 906
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 50
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)