Query 027033
Match_columns 229
No_of_seqs 117 out of 239
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03998 Utp11: Utp11 protein; 100.0 3.6E-75 7.8E-80 515.9 19.9 216 10-229 1-243 (243)
2 KOG3237 Uncharacterized conser 100.0 2.9E-74 6.3E-79 502.2 16.9 225 1-229 1-250 (250)
3 COG5223 Uncharacterized conser 100.0 6.9E-55 1.5E-59 373.6 12.7 219 1-229 1-240 (240)
4 PF10241 KxDL: Uncharacterized 35.6 50 0.0011 25.0 3.4 24 40-63 65-88 (88)
5 cd07605 I-BAR_IMD Inverse (I)- 18.5 1.6E+02 0.0035 26.2 3.9 31 32-62 119-149 (223)
6 PF04696 Pinin_SDK_memA: pinin 17.8 2.1E+02 0.0046 23.2 4.1 49 173-221 61-109 (131)
7 COG4549 Uncharacterized protei 16.1 51 0.0011 28.6 0.1 11 58-68 108-118 (178)
8 PF02202 Tachykinin: Tachykini 15.3 21 0.00045 17.7 -1.4 7 59-65 3-9 (11)
9 PF10258 RNA_GG_bind: PHAX RNA 14.9 2.2E+02 0.0047 21.8 3.3 68 26-93 9-78 (87)
10 smart00203 TK Tachykinin famil 13.2 59 0.0013 19.7 -0.2 12 59-70 3-14 (26)
No 1
>PF03998 Utp11: Utp11 protein; InterPro: IPR007144 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp11, a large ribonuclear protein that associates with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=100.00 E-value=3.6e-75 Score=515.92 Aligned_cols=216 Identities=49% Similarity=0.770 Sum_probs=195.2
Q ss_pred cccccccCCcchhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHHhhCCCcchhhhhhccccC-CcccccCC-CCCCC
Q 027033 10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVD-GVHRLEGE-ANKYT 87 (229)
Q Consensus 10 rr~HrERsQp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~L~~KA~~rNpDEFyf~M~~~k~~~-G~h~~~~~-~~~lt 87 (229)
||+|+|||||++|+|||||||||||++||+|||+|+++|+.|++||++||||||||+|||+++.+ |+|+..++ ++.+|
T Consensus 1 rr~HrERsQP~~R~~lGlLEKkKDY~lRA~dy~~K~~~Lk~Lr~KA~~RNpDEFyf~M~~sk~~~~G~h~~~~~~~~~~~ 80 (243)
T PF03998_consen 1 RRNHRERSQPASRKKLGLLEKKKDYKLRAKDYHKKEAKLKRLREKAANRNPDEFYFGMINSKTDDDGVHVEKREENEELS 80 (243)
T ss_pred CCcccccCChHHhhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHhcccCCCCeeccCccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999 99999887 78999
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhccCCCCC--CCeEEEecChHHHHH-------------hhhhcCCCC
Q 027033 88 QEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPS--SRHVYFAEDREEAKE-------------IKSQSGRKD 152 (229)
Q Consensus 88 ~e~~kLlKTQDl~Yv~~~r~~e~kKIekL~~~L~~~~~~~~--nkH~vFvD~~~e~~~-------------~~~~~nr~~ 152 (229)
+++++||+|||++||+++++++.++|++|+++||++++..+ |+|||||||++|+++ +++.+|+|+
T Consensus 81 ~e~~~llkTQD~~Yv~~~~~~e~kKIekL~~~l~~~~~~~~~~~kh~vFvD~~~e~~~f~~~~~~~t~~e~~~~~~nr~~ 160 (243)
T PF03998_consen 81 KEQVKLLKTQDLNYVRTKRQIERKKIEKLQSELHLLDGKSSGKNKHIVFVDSEEEAKEFDPAEYFDTDPELLDRRENRPK 160 (243)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCceEEecCchHHHhccHHHhhccchhhhcccccccc
Confidence 99999999999999999999999999999999999986554 599999999999886 457788888
Q ss_pred CCCCCC-CC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcceecccccCCCCCceee
Q 027033 153 ALPDFD-DI-------PDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKG--RKRKLREEEIVCPTSKAVYK 222 (229)
Q Consensus 153 ~~~l~~-~~-------~~~~~~~~~~~y~eL~~r~~R~k~L~~~~~~Lelqk~lm~Kg--~kkKv~~~~~g~~~~~~vyk 222 (229)
.++|.. .+ ...+...+...|++|.+|++|+++|..|+++|+++++||++| ++++++++.+ ++|||+
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~eL~~r~~R~k~L~~~~~~lelqr~lm~kg~~~k~k~~~~~~----~~~vyk 236 (243)
T PF03998_consen 161 KDQLEEESLPEEEREAKKKLEKKREKLYKELEARLEREKELKKAEQELELQRALMKKGKKKKKKIKGGKN----GAPVYK 236 (243)
T ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeccCCCC----CCceEE
Confidence 888722 22 225677889999999999999999999999999999999999 5555655433 499999
Q ss_pred ecccccC
Q 027033 223 WRSERKR 229 (229)
Q Consensus 223 wk~eRKr 229 (229)
|++||||
T Consensus 237 wk~eRKr 243 (243)
T PF03998_consen 237 WKRERKR 243 (243)
T ss_pred eecccCC
Confidence 9999997
No 2
>KOG3237 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.9e-74 Score=502.21 Aligned_cols=225 Identities=48% Similarity=0.738 Sum_probs=208.8
Q ss_pred Ccccccccc--cccccccCCcchhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHHhhCCCcchhhhhhccccCCccc
Q 027033 1 MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHR 78 (229)
Q Consensus 1 MSSlrnavk--rr~HrERsQp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~L~~KA~~rNpDEFyf~M~~~k~~~G~h~ 78 (229)
||||+||++ |++|||||||.+|++||+|||||||++||.|||+|+++|+.|+++|+++|||||||+|+|+++.||+|+
T Consensus 1 mss~~~a~ks~rk~HRERsQP~~Rrk~G~LEKkKDY~~RA~dy~kKq~tLK~LrekA~eKNpDEfyh~M~~~K~~dG~hi 80 (250)
T KOG3237|consen 1 MSSFVNASKSRRKVHRERSQPEARRKYGFLEKKKDYKKRAQDYHKKQDTLKKLREKALEKNPDEFYHKMHNSKTKDGRHI 80 (250)
T ss_pred CcchhhcchhhhhHHHhhcChhHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhccccCCccc
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhccC--CCCCCCeEEEecChHHHHH-------------
Q 027033 79 LEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEAKE------------- 143 (229)
Q Consensus 79 ~~~~~~~lt~e~~kLlKTQDl~Yv~~~r~~e~kKIekL~~~L~~~~--~~~~nkH~vFvD~~~e~~~------------- 143 (229)
+..+.+++|+|||+||+||||+||.+++++|.+|||+|.++||+++ .+.+|+||+||||.+|+++
T Consensus 81 ~k~e~~e~t~eqlklmktQDi~YV~~kr~~ErkKIerlka~L~~~~~~~~~s~kH~~F~d~~~ea~~Fdp~~~f~tt~el 160 (250)
T KOG3237|consen 81 EKDEVDEPTMEQLKLMKTQDIGYVRMKRQRERKKIERLKAQLHCVDRNKGESNKHTKFVDDREEAKSFDPAKFFQTTLEL 160 (250)
T ss_pred cccccccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccccccccccccCceeEEeccHHHHhccChHHHhcccHHH
Confidence 9987789999999999999999999999999999999999999998 6778999999999999976
Q ss_pred hhhhcCCCCCCCCCCC-------Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceecccccCC
Q 027033 144 IKSQSGRKDALPDFDD-------IP-DHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCP 215 (229)
Q Consensus 144 ~~~~~nr~~~~~l~~~-------~~-~~~~~~~~~~y~eL~~r~~R~k~L~~~~~~Lelqk~lm~Kg~kkKv~~~~~g~~ 215 (229)
+++.+|++..+++..+ .| ..+.+.+...|.+|..|++|+++|.+|++.|++++.|+++ +++++++ +++
T Consensus 161 v~R~~nr~~keei~~~~~~~~~~~~~k~~~k~~~k~~~eL~kR~eR~k~L~~v~qkv~l~k~L~~k-~~~k~Kk---~~v 236 (250)
T KOG3237|consen 161 VGRSENRLKKEEIQKEISKATSPMPKKSLDKKKQKRYNELKKRREREKKLNVVEQKVELQKELQKK-KKRKVKK---KTV 236 (250)
T ss_pred hhhhhhhhhHHHHHHHHHhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccch---hhc
Confidence 5788999998887111 12 2567888999999999999999999999999999999988 5667776 578
Q ss_pred CCCceeeecccccC
Q 027033 216 TSKAVYKWRSERKR 229 (229)
Q Consensus 216 ~~~~vykwk~eRKr 229 (229)
+|+|||+|.++|||
T Consensus 237 ~~~~vyk~~~erkr 250 (250)
T KOG3237|consen 237 DSPAVYKWRYERKR 250 (250)
T ss_pred cchhhhcchhhccC
Confidence 88999999999986
No 3
>COG5223 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.9e-55 Score=373.56 Aligned_cols=219 Identities=35% Similarity=0.442 Sum_probs=197.5
Q ss_pred Cccccccc-ccccccccCCcchhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHHhhCCCcchhhhhhccccCCcccc
Q 027033 1 MSSLRNAL-PRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRL 79 (229)
Q Consensus 1 MSSlrnav-krr~HrERsQp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~L~~KA~~rNpDEFyf~M~~~k~~~G~h~~ 79 (229)
||+.-+.| +|++|+||+||-+|++||+|||||||+.||.|||.|++.|+.||++|+.||||||||+|++.+|.+|+.++
T Consensus 1 Ms~~f~~v~qrK~hrERtQp~~RrkyG~LEK~KDyvkRaqd~~~kq~~lk~lrEka~ernpdEyyh~mhs~Ktd~gv~~~ 80 (240)
T COG5223 1 MSLGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPDEYYHGMHSVKTDGGVSSI 80 (240)
T ss_pred CCcccccchHhhhHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHhhhhcccCCccce
Confidence 78644445 79999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEecChHHHHH-------------hhh
Q 027033 80 EGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKE-------------IKS 146 (229)
Q Consensus 80 ~~~~~~lt~e~~kLlKTQDl~Yv~~~r~~e~kKIekL~~~L~~~~~~~~nkH~vFvD~~~e~~~-------------~~~ 146 (229)
.+++++++.|++++++|||++|+++.++.|..+++.+..+++|. .++.||||||+..++++ +.+
T Consensus 81 ~ReDe~~~md~~KmlktqD~~~~R~~r~lEr~k~~~~~~qi~f~---es~~htifvD~r~~~kef~peeFf~tt~elV~r 157 (240)
T COG5223 81 YREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIKFE---ESSLHTIFVDMRFGQKEFIPEEFFRTTEELVVR 157 (240)
T ss_pred eccccchHHHHHHHHHhhhhHHHHHHHHHHHhCCcchhceeeee---ccccchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999994 56799999999988765 467
Q ss_pred hcCCCCCCCCCC-----C-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceecccccCCCCCc
Q 027033 147 QSGRKDALPDFD-----D-IPD-HIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKA 219 (229)
Q Consensus 147 ~~nr~~~~~l~~-----~-~~~-~~~~~~~~~y~eL~~r~~R~k~L~~~~~~Lelqk~lm~Kg~kkKv~~~~~g~~~~~~ 219 (229)
..||...++.+. . ++. ...+.+.++..+|..|..|.++|..|++.+++++.|.+||.++||+. | .|
T Consensus 158 ~enrl~kdqi~nNel~~sv~~~~~~~k~k~k~~~el~~~~krd~kl~~~eer~e~~r~l~~kg~kkkvv~---~----k~ 230 (240)
T COG5223 158 RENRLEKDQIENNELEDSVFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGKKKVVN---G----KP 230 (240)
T ss_pred HHHHHHHhhhcccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccC---C----cc
Confidence 778877766522 1 233 34667888999999999999999999999999999999999999986 5 99
Q ss_pred eeeecccccC
Q 027033 220 VYKWRSERKR 229 (229)
Q Consensus 220 vykwk~eRKr 229 (229)
||+|+.+|+|
T Consensus 231 ~~~~rn~~~r 240 (240)
T COG5223 231 VYKWRNERKR 240 (240)
T ss_pred cccccccccC
Confidence 9999999986
No 4
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=35.63 E-value=50 Score=25.00 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.8
Q ss_pred HHhHHHHHHHHHHHHHHhhCCCcc
Q 027033 40 AYHKKEESIRRLKEKAAFRNPDEF 63 (229)
Q Consensus 40 dy~~K~~~lk~L~~KA~~rNpDEF 63 (229)
|-.--..+|..|+.++....|+||
T Consensus 65 DLd~i~krir~lk~kl~~~yP~~y 88 (88)
T PF10241_consen 65 DLDYIFKRIRSLKAKLAKQYPEEY 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcC
Confidence 334456789999999999999998
No 5
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=18.52 E-value=1.6e+02 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=26.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHhhCCCc
Q 027033 32 KDYVIRAKAYHKKEESIRRLKEKAAFRNPDE 62 (229)
Q Consensus 32 KDY~~RA~dy~~K~~~lk~L~~KA~~rNpDE 62 (229)
++|+.+..++.+.+..++.|+.|+.-.||+.
T Consensus 119 ~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k 149 (223)
T cd07605 119 KEYKQKREDLDKARSELKKLQKKSQKSGTGK 149 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCc
Confidence 5778888899999999999999999777753
No 6
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=17.77 E-value=2.1e+02 Score=23.19 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceecccccCCCCCcee
Q 027033 173 RELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVY 221 (229)
Q Consensus 173 ~eL~~r~~R~k~L~~~~~~Lelqk~lm~Kg~kkKv~~~~~g~~~~~~vy 221 (229)
..+..+..+..+|...++++............-..-.....|.++|+||
T Consensus 61 ~~~~err~~~~elr~~e~~~~~~~~~~~~~~~~~~l~~fi~Tkt~P~iy 109 (131)
T PF04696_consen 61 ELLEERREKQRELRRLEQKKEEERLMEIWHEHYLALANFIRTKTEPHIY 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcee
Confidence 3455666666677777777776664432111111112223466667766
No 7
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=16.06 E-value=51 Score=28.58 Aligned_cols=11 Identities=45% Similarity=0.890 Sum_probs=8.3
Q ss_pred hCCCcchhhhh
Q 027033 58 RNPDEFYFKMI 68 (229)
Q Consensus 58 rNpDEFyf~M~ 68 (229)
.||||||-+-+
T Consensus 108 nlPde~YD~fv 118 (178)
T COG4549 108 NLPDEFYDEFV 118 (178)
T ss_pred CCchhhccceE
Confidence 59999995544
No 8
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=15.26 E-value=21 Score=17.68 Aligned_cols=7 Identities=57% Similarity=1.160 Sum_probs=4.8
Q ss_pred CCCcchh
Q 027033 59 NPDEFYF 65 (229)
Q Consensus 59 NpDEFyf 65 (229)
+||.||=
T Consensus 3 ~pd~F~G 9 (11)
T PF02202_consen 3 KPDQFYG 9 (11)
T ss_dssp CHHHHCC
T ss_pred Cccccee
Confidence 5778873
No 9
>PF10258 RNA_GG_bind: PHAX RNA-binding domain; InterPro: IPR019385 The phosphorylated adaptor for RNA export (PHAX) protein transports U3 snoRNA from the nucleus after transcription []. This entry represents the highly conserved U3 snoRNA-binding domain of PHAX, which is characterised by having two pairs of adjacent glycines with the sequence motif GGx12GG.; PDB: 2XC7_A 2W4S_B.
Probab=14.92 E-value=2.2e+02 Score=21.76 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=47.9
Q ss_pred cccccchhHHHHHHHHhHHHHHHHHHHHH-HHhhCCCcchhhhhhccccCCccccc-CCCCCCCHHHHHH
Q 027033 26 GLLEKHKDYVIRAKAYHKKEESIRRLKEK-AAFRNPDEFYFKMIKTKTVDGVHRLE-GEANKYTQEELML 93 (229)
Q Consensus 26 GlLEKkKDY~~RA~dy~~K~~~lk~L~~K-A~~rNpDEFyf~M~~~k~~~G~h~~~-~~~~~lt~e~~kL 93 (229)
.|-|++.|.+.|+=..-=.+..+..|.+- +-+.|..-+.-.-...+|.+||-... ......|+++.+.
T Consensus 9 ~L~E~k~~li~rvV~~lG~~~~~~l~~et~~Ie~~GG~~~~dG~RrRTpGGVF~~LlK~~~~i~~e~~k~ 78 (87)
T PF10258_consen 9 RLKEPKKDLIERVVKRLGVEKALELLNETMKIEKNGGMMTADGSRRRTPGGVFFNLLKNDDDISPEDKKE 78 (87)
T ss_dssp HCT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-EE-TTSSCE-SHHHHHHHHHHHTTSS-HHHHHH
T ss_pred HhCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHcCCeEeecCccCcCCCcchhHhhccCccCCHHHHHH
Confidence 57899999999999999999999988874 45778887777777778888877442 2235678887664
No 10
>smart00203 TK Tachykinin family. Tachykinins are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. These peptides are synthesized as longer precursors and then processed to peptides from ten to twelve residues long.
Probab=13.22 E-value=59 Score=19.72 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=9.0
Q ss_pred CCCcchhhhhhc
Q 027033 59 NPDEFYFKMIKT 70 (229)
Q Consensus 59 NpDEFyf~M~~~ 70 (229)
+||.||==|...
T Consensus 3 ~Pd~FyGLM~~~ 14 (26)
T smart00203 3 KPDQFYGLMXXX 14 (26)
T ss_pred ChhhEEEeeeec
Confidence 799998777543
Done!