Query 027033
Match_columns 229
No_of_seqs 117 out of 239
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jws_A GA88; evolution, foldin 30.2 15 0.00052 25.2 0.7 33 42-78 11-44 (56)
2 3twe_A Alpha4H; unknown functi 24.3 95 0.0032 17.9 3.3 19 169-187 4-22 (27)
3 2fs1_A PSD-1; solution structu 15.4 47 0.0016 22.8 0.8 32 42-77 11-43 (56)
4 1gjs_A Immunoglobulin G bindin 11.0 74 0.0025 22.4 0.7 33 41-77 21-54 (65)
5 4g3b_A Alpha4F3D; alpha helix, 9.3 3E+02 0.01 15.6 3.3 18 169-186 4-21 (26)
6 1q2z_A ATP-dependent DNA helic 8.1 4.1E+02 0.014 19.9 4.1 45 46-91 68-112 (120)
7 2l9s_A PHD finger protein 12; 7.4 2.4E+02 0.0082 18.4 2.1 16 48-63 14-29 (45)
8 2we8_A Xanthine dehydrogenase; 6.4 67 0.0023 29.3 -1.5 20 54-73 290-309 (386)
9 2w4s_A Ankyrin-repeat protein; 4.6 5.7E+02 0.02 19.4 3.1 54 25-78 16-70 (113)
10 2qnl_A Uncharacterized protein 4.5 2.4E+02 0.0082 22.4 0.9 43 94-136 2-58 (162)
No 1
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=30.20 E-value=15 Score=25.23 Aligned_cols=33 Identities=42% Similarity=0.642 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhhhh-ccccCCccc
Q 027033 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVHR 78 (229)
Q Consensus 42 ~~K~~~lk~L~~KA~~rNpDEFyf~M~~-~k~~~G~h~ 78 (229)
..|...|..|..-+- -||||.-|| +++++||.-
T Consensus 11 ~aK~~ai~el~~agi----~e~~~n~innakTVeGV~a 44 (56)
T 2jws_A 11 QAKEEAIKELVDAGI----AEKYIKLIANAKTVEGVWT 44 (56)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCSCHHHHHH
T ss_pred hhhHhHHHHHHHhhh----HHHHHHHhhcccccccccc
Confidence 357778888877664 389998875 777888753
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.29 E-value=95 Score=17.85 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027033 169 AASYRELEGRKKRVQELEK 187 (229)
Q Consensus 169 ~~~y~eL~~r~~R~k~L~~ 187 (229)
...|+||+.-.+|..+|..
T Consensus 4 delykeledlqerlrklrk 22 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4579999999998887754
No 3
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=15.39 E-value=47 Score=22.77 Aligned_cols=32 Identities=41% Similarity=0.756 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhhhh-ccccCCcc
Q 027033 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (229)
Q Consensus 42 ~~K~~~lk~L~~KA~~rNpDEFyf~M~~-~k~~~G~h 77 (229)
..|+..|..|..--. ..||+.-|| ++|.+||.
T Consensus 11 eAKe~Ai~El~~~GI----sd~y~~~In~AkTvEgv~ 43 (56)
T 2fs1_A 11 QAKEAAIKELKQYGI----GDYYIKLINNAKTVEGVE 43 (56)
T ss_dssp HHHHHHHHHHHHHCC----CHHHHHHHHTCSSSHHHH
T ss_pred HHHHHHHHHHHHcCc----hHHHHHHhhhhhhHHHHH
Confidence 346666666654322 678988886 77888865
No 4
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=10.98 E-value=74 Score=22.35 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHHHHHhhCCCcchhhhhh-ccccCCcc
Q 027033 41 YHKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (229)
Q Consensus 41 y~~K~~~lk~L~~KA~~rNpDEFyf~M~~-~k~~~G~h 77 (229)
-..|+..|..|..--. ..||+.-|| ++|.+||.
T Consensus 21 ~eAKe~Ai~EL~~~GI----sd~y~~~In~AkTvEgV~ 54 (65)
T 1gjs_A 21 AEAKVLANRELDKYGV----SDYYKNLINNAKTVEGVK 54 (65)
T ss_dssp HHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHHHHHcCc----cHHHHHhhhccchHHHHH
Confidence 3456777777765333 678988876 67777764
No 5
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=9.30 E-value=3e+02 Score=15.57 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027033 169 AASYRELEGRKKRVQELE 186 (229)
Q Consensus 169 ~~~y~eL~~r~~R~k~L~ 186 (229)
...|+||+...+|..+..
T Consensus 4 de~ykeled~qerlrk~r 21 (26)
T 4g3b_A 4 DEXYKELEDXQERLRKXR 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 357999999888876643
No 6
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=8.09 E-value=4.1e+02 Score=19.92 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhCCCcchhhhhhccccCCcccccCCCCCCCHHHH
Q 027033 46 ESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEEL 91 (229)
Q Consensus 46 ~~lk~L~~KA~~rNpDEFyf~M~~~k~~~G~h~~~~~~~~lt~e~~ 91 (229)
+=|..|+.+...++=.+|...++..++ +-+..........|+++-
T Consensus 68 ~Fl~~Lk~~~~~~~l~~FW~~iv~~~l-gLI~~~E~~~S~vt~eeA 112 (120)
T 1q2z_A 68 NFLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEA 112 (120)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHHHHTTC-CSCCSTTSSSCCCCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHCCc-CCCcHhhccccCCCHHHH
Confidence 347788888988888899987665322 212222222346677764
No 7
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=7.40 E-value=2.4e+02 Score=18.36 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhCCCcc
Q 027033 48 IRRLKEKAAFRNPDEF 63 (229)
Q Consensus 48 lk~L~~KA~~rNpDEF 63 (229)
+..|=.-|...||-+|
T Consensus 14 f~~Li~aA~~~NP~qF 29 (45)
T 2l9s_A 14 FELLIAAAMERNPTQF 29 (45)
T ss_dssp HHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHhChhhh
Confidence 3456677899999988
No 8
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A
Probab=6.39 E-value=67 Score=29.27 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=15.5
Q ss_pred HHHhhCCCcchhhhhhcccc
Q 027033 54 KAAFRNPDEFYFKMIKTKTV 73 (229)
Q Consensus 54 KA~~rNpDEFyf~M~~~k~~ 73 (229)
.++.+.||=||.|||.|++.
T Consensus 290 ~~aL~~~~~~YIG~iGSrrk 309 (386)
T 2we8_A 290 EVALRLPDIAYIGAMGSRRT 309 (386)
T ss_dssp HHHTTSSCCSEEEECCCHHH
T ss_pred HHHhcCCCCCEEEEecChhH
Confidence 45667787899999998863
No 9
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A {Cryptosporidium parvum}
Probab=4.55 E-value=5.7e+02 Score=19.44 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=38.4
Q ss_pred ccccccchhHHHHHHHHhHHHHHHHHHHHHH-HhhCCCcchhhhhhccccCCccc
Q 027033 25 FGLLEKHKDYVIRAKAYHKKEESIRRLKEKA-AFRNPDEFYFKMIKTKTVDGVHR 78 (229)
Q Consensus 25 lGlLEKkKDY~~RA~dy~~K~~~lk~L~~KA-~~rNpDEFyf~M~~~k~~~G~h~ 78 (229)
.+|-|.+.+.+.|+=+.-=....+..|.+-. -+.|...+.-.-...+|.+||-.
T Consensus 16 ~~L~E~k~~li~RvV~~lG~~~~~~L~~eT~~IE~~GG~~t~dGsRrRTpGGVF~ 70 (113)
T 2w4s_A 16 TGLQEPKKEFIARVIKTIGSQRSLQLYENAMKVENSGGLLTADMSRRKTIGGVFC 70 (113)
T ss_dssp HHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCTTSSSBCCHHHHHH
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECcCCCccccCCcchh
Confidence 4578999999999999999999999988754 45666556655556677777653
No 10
>2qnl_A Uncharacterized protein; putative DNA damage-inducible protein, structural genomics, center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=4.55 E-value=2.4e+02 Score=22.36 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=23.0
Q ss_pred hhhchHHHHHHHHHH-------HHHHHHHHHh-hhhccCCCCCC------CeEEEec
Q 027033 94 MKTQDIGYVLQKLQS-------ERNKIEKLTT-MLHSLDNNPSS------RHVYFAE 136 (229)
Q Consensus 94 lKTQDl~Yv~~~r~~-------e~kKIekL~~-~L~~~~~~~~n------kH~vFvD 136 (229)
|.|||.-|+...+.. -.+-|+.|-. +++...++++| +|++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~e~l~~~p~~~~Nsia~iv~HL~~~~ 58 (162)
T 2qnl_A 2 MHTQEALFVRLALDAWNTQSSRTDKLIQSLSNEALAVETAPGRNSGTYLLGHLTAVH 58 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHSBSSTTSCBHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcccCCCCCCcHHHHHHHHHHHH
Confidence 678887787765543 2233333322 23333344455 6888864
Done!