Query 027033
Match_columns 229
No_of_seqs 117 out of 239
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 05:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027033.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027033hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gjsa_ a.8.1.2 (A:) IgG bindi 37.3 4.2 0.0003 27.0 0.5 47 27-77 7-54 (65)
2 d2j5ya1 a.8.1.2 (A:1-53) PAB { 34.2 4.2 0.00031 25.8 0.1 33 42-77 9-42 (53)
3 d1pzra_ a.38.2.1 (A:) Erythron 6.9 77 0.0056 19.8 1.1 31 62-92 4-34 (60)
4 d1a1va2 c.37.1.14 (A:326-624) 5.0 1.4E+02 0.01 24.4 2.0 17 128-144 36-52 (299)
5 d1t5ia_ c.37.1.19 (A:) Spliceo 4.9 2.6E+02 0.019 19.6 3.4 32 110-144 12-43 (168)
6 d1rw2a_ a.118.19.1 (A:) C-term 4.6 2.6E+02 0.019 20.2 3.1 43 47-92 100-144 (152)
7 d1gpqa_ d.233.1.1 (A:) Inhibit 4.1 1.8E+02 0.013 21.0 1.8 19 47-65 109-127 (127)
8 d1eyfa_ g.48.1.1 (A:) Ada DNA 4.0 2.1E+02 0.015 19.4 2.0 18 128-145 48-65 (92)
9 d1zh5a1 a.4.5.46 (A:5-103) Lup 3.9 87 0.0063 21.5 -0.2 11 60-70 16-26 (99)
10 d1s7oa_ a.4.13.3 (A:) Hypothet 3.8 5.6E+02 0.041 17.0 4.3 41 84-124 31-71 (106)
No 1
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=37.32 E-value=4.2 Score=26.97 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=34.2
Q ss_pred ccccchhHHHHHHHHhHHHHHHHHHHHHHHhhCCCcchhhhhh-ccccCCcc
Q 027033 27 LLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (229)
Q Consensus 27 lLEKkKDY~~RA~dy~~K~~~lk~L~~KA~~rNpDEFyf~M~~-~k~~~G~h 77 (229)
+=++|-|-+.=+.--+.|+..|+.|.+--- .+|||..|| .+|+.||.
T Consensus 7 ~~~k~ed~v~~~~L~~AKe~Ai~Elk~yGi----sdyy~nlIN~AKTVEGV~ 54 (65)
T d1gjsa_ 7 LNAQHDEAVDANSLAEAKVLANRELDKYGV----SDYYKNLINNAKTVEGVK 54 (65)
T ss_dssp SCSSCCSSCTHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHH
T ss_pred eccCcHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHhccchHHHHH
Confidence 334555555555566788999999987655 589999997 67777864
No 2
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=34.18 E-value=4.2 Score=25.83 Aligned_cols=33 Identities=39% Similarity=0.678 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhhhh-ccccCCcc
Q 027033 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (229)
Q Consensus 42 ~~K~~~lk~L~~KA~~rNpDEFyf~M~~-~k~~~G~h 77 (229)
+.|++.|+.|++-- =..+|||..|| .+|+.||.
T Consensus 9 ~AKe~AI~eLK~~G---Its~~y~~~InkaKTVEgV~ 42 (53)
T d2j5ya1 9 NAKEDAIAELKKAG---ITSDFYFNAINKAKTVEEVN 42 (53)
T ss_dssp HHHHHHHHHHHHTT---CCCHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHcC---ccHHHHHHHHHhhhhHHHHH
Confidence 46778888887632 24689999988 56777764
No 3
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=6.94 E-value=77 Score=19.84 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.2
Q ss_pred cchhhhhhccccCCcccccCCCCCCCHHHHH
Q 027033 62 EFYFKMIKTKTVDGVHRLEGEANKYTQEELM 92 (229)
Q Consensus 62 EFyf~M~~~k~~~G~h~~~~~~~~lt~e~~k 92 (229)
.=.|.|+..+..+|....-.+.+.+|.|.++
T Consensus 4 delfsmldqrfgggedllms~~~gmtedkLR 34 (60)
T d1pzra_ 4 DELFSMLDQRFGGGEDLLMSGDNGMTEEKLR 34 (60)
T ss_dssp HHHHHHHHHHHHCCCSSCCCCCCSSHHHHHH
T ss_pred HHHHHHHHHhhcCcchhhccCCCCCCHHHHH
Confidence 3468999999888988777777889999876
No 4
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=5.05 E-value=1.4e+02 Score=24.44 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=14.5
Q ss_pred CCCeEEEecChHHHHHh
Q 027033 128 SSRHVYFAEDREEAKEI 144 (229)
Q Consensus 128 ~nkH~vFvD~~~e~~~~ 144 (229)
.++++||++|..+++.+
T Consensus 36 ggk~LVFcnSR~~aE~L 52 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDEL 52 (299)
T ss_dssp SSEEEEECSSHHHHHHH
T ss_pred CCCEEEECCcHHHHHHH
Confidence 46899999999998874
No 5
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.93 E-value=2.6e+02 Score=19.60 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhccCCCCCCCeEEEecChHHHHHh
Q 027033 110 RNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEI 144 (229)
Q Consensus 110 ~kKIekL~~~L~~~~~~~~nkH~vFvD~~~e~~~~ 144 (229)
..|++.|..-|..+ ..++-+||+.+...++.+
T Consensus 12 ~~K~~~L~~ll~~~---~~~k~iIF~~~~~~~~~l 43 (168)
T d1t5ia_ 12 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIAL 43 (168)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCeEEEEEeeeecchhh
Confidence 34556665555443 346899999999888763
No 6
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.56 E-value=2.6e+02 Score=20.23 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhCCCcchhhhhhccccCCcccccCC--CCCCCHHHHH
Q 027033 47 SIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGE--ANKYTQEELM 92 (229)
Q Consensus 47 ~lk~L~~KA~~rNpDEFyf~M~~~k~~~G~h~~~~~--~~~lt~e~~k 92 (229)
=|..|+.++..+|-.+|....+..++ | .|...+ ....|.|+.+
T Consensus 100 FL~~LK~~~l~~~l~~FW~~i~~~~l--g-LIs~~E~~~S~Vt~eeA~ 144 (152)
T d1rw2a_ 100 FLKALQEKVEIKQLNHFWEIVVQDGI--T-LITKEEASGSSVTAEEAK 144 (152)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTC--S-SCSSSSSSSCSCCTHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcCC--c-cCChhhcccCCCCHHHHH
Confidence 47778888888887788876655433 2 222222 2467877755
No 7
>d1gpqa_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy {Escherichia coli [TaxId: 562]}
Probab=4.13 E-value=1.8e+02 Score=20.96 Aligned_cols=19 Identities=21% Similarity=0.266 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhCCCcchh
Q 027033 47 SIRRLKEKAAFRNPDEFYF 65 (229)
Q Consensus 47 ~lk~L~~KA~~rNpDEFyf 65 (229)
.|+.|=...+..+|+-|+|
T Consensus 109 ~m~a~L~~qL~~dPn~f~~ 127 (127)
T d1gpqa_ 109 VLFAALTGSLENHPDGFNF 127 (127)
T ss_dssp HHHHHHHSHHHHCTTSCCC
T ss_pred HHHHHHHHHHHhCccccCC
Confidence 4666777788899999987
No 8
>d1eyfa_ g.48.1.1 (A:) Ada DNA repair protein, N-terminal domain (N-Ada 10) {Escherichia coli [TaxId: 562]}
Probab=3.98 E-value=2.1e+02 Score=19.39 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.9
Q ss_pred CCCeEEEecChHHHHHhh
Q 027033 128 SSRHVYFAEDREEAKEIK 145 (229)
Q Consensus 128 ~nkH~vFvD~~~e~~~~~ 145 (229)
...+++|++|.+|+.+.+
T Consensus 48 ~~eNv~ff~t~~eA~~aG 65 (92)
T d1eyfa_ 48 LRENVSFYANASEALAAG 65 (92)
T ss_dssp CGGGEEEESSHHHHHHTT
T ss_pred CchheeecCCHHHHHHcC
Confidence 348999999999998843
No 9
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.92 E-value=87 Score=21.50 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=7.7
Q ss_pred CCcchhhhhhc
Q 027033 60 PDEFYFKMIKT 70 (229)
Q Consensus 60 pDEFyf~M~~~ 70 (229)
-=||||+=-|-
T Consensus 16 QvEfYFSd~NL 26 (99)
T d1zh5a1 16 QIEYYFGDFNL 26 (99)
T ss_dssp HHHHHTSTTTG
T ss_pred HHHHhcCHhhh
Confidence 34899986553
No 10
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=3.76 E-value=5.6e+02 Score=16.97 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhccC
Q 027033 84 NKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD 124 (229)
Q Consensus 84 ~~lt~e~~kLlKTQDl~Yv~~~r~~e~kKIekL~~~L~~~~ 124 (229)
..+|..+|.-.-.=-.+-|........+++....+.||+++
T Consensus 31 ~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~~e~kL~l~~ 71 (106)
T d1s7oa_ 31 DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHMYS 71 (106)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHChHH
Confidence 45888888865555667788888888889988888999853
Done!