Query 027035
Match_columns 229
No_of_seqs 144 out of 1419
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:02:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10903 peptidyl-prolyl cis-t 100.0 1.2E-45 2.5E-50 302.8 21.7 182 1-190 2-190 (190)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 3.6E-46 7.9E-51 298.1 17.3 157 27-191 38-204 (217)
3 cd01923 cyclophilin_RING cyclo 100.0 8.5E-46 1.8E-50 296.2 19.3 155 30-194 1-158 (159)
4 cd01921 cyclophilin_RRM cyclop 100.0 7E-46 1.5E-50 298.7 18.5 161 32-196 1-166 (166)
5 KOG0546 HSP90 co-chaperone CPR 100.0 3.3E-46 7.2E-51 322.8 14.1 158 27-192 7-181 (372)
6 KOG0881 Cyclophilin type pepti 100.0 1.5E-46 3.2E-51 280.6 9.7 157 23-189 4-163 (164)
7 COG0652 PpiB Peptidyl-prolyl c 100.0 3.8E-45 8.1E-50 289.0 17.0 153 30-189 1-157 (158)
8 cd01928 Cyclophilin_PPIL3_like 100.0 2.5E-44 5.5E-49 285.9 18.5 150 29-188 1-153 (153)
9 KOG0883 Cyclophilin type, U bo 100.0 9.8E-45 2.1E-49 314.5 14.4 166 27-202 276-444 (518)
10 cd01927 cyclophilin_WD40 cyclo 100.0 1.6E-43 3.5E-48 279.8 17.3 145 32-186 1-148 (148)
11 cd01925 cyclophilin_CeCYP16-li 100.0 1.1E-42 2.5E-47 281.1 19.5 159 28-196 5-167 (171)
12 PRK10791 peptidyl-prolyl cis-t 100.0 1.4E-42 3E-47 278.6 18.5 152 31-189 2-163 (164)
13 cd01922 cyclophilin_SpCYP2_lik 100.0 8.8E-43 1.9E-47 275.0 16.7 143 32-185 1-146 (146)
14 PTZ00221 cyclophilin; Provisio 100.0 3.5E-42 7.6E-47 290.6 19.7 160 26-197 50-227 (249)
15 PLN03149 peptidyl-prolyl isome 100.0 1.8E-41 3.9E-46 277.3 18.9 156 26-189 16-186 (186)
16 PTZ00060 cyclophilin; Provisio 100.0 4.2E-41 9.1E-46 274.6 19.5 153 28-189 15-182 (183)
17 cd01920 cyclophilin_EcCYP_like 100.0 3.9E-41 8.4E-46 268.2 16.7 147 33-186 2-155 (155)
18 cd01926 cyclophilin_ABH_like c 100.0 7.1E-41 1.5E-45 269.1 18.2 143 36-187 13-164 (164)
19 KOG0879 U-snRNP-associated cyc 100.0 8.1E-42 1.8E-46 257.9 11.7 154 27-188 9-176 (177)
20 KOG0884 Similar to cyclophilin 100.0 1.1E-41 2.4E-46 253.0 11.6 155 29-193 1-159 (161)
21 KOG0882 Cyclophilin-related pe 100.0 4.2E-41 9.1E-46 296.8 12.6 156 23-188 399-557 (558)
22 KOG0415 Predicted peptidyl pro 100.0 2.2E-40 4.7E-45 284.6 13.4 164 29-196 1-169 (479)
23 KOG0885 Peptidyl-prolyl cis-tr 100.0 5.7E-40 1.2E-44 283.6 13.2 163 26-198 10-176 (439)
24 PF00160 Pro_isomerase: Cyclop 100.0 6.6E-39 1.4E-43 255.0 16.6 151 30-188 1-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 9E-39 1.9E-43 252.0 17.1 144 32-185 1-146 (146)
26 KOG0111 Cyclophilin-type pepti 100.0 2.1E-37 4.6E-42 251.6 9.6 155 26-189 134-297 (298)
27 cd01924 cyclophilin_TLP40_like 100.0 7.3E-36 1.6E-40 242.2 14.3 133 34-166 3-165 (176)
28 KOG0865 Cyclophilin type pepti 100.0 3.7E-30 8E-35 205.1 9.2 153 28-189 3-167 (167)
29 KOG0882 Cyclophilin-related pe 98.3 1.4E-06 2.9E-11 78.7 6.6 156 30-189 100-262 (558)
30 TIGR03268 methan_mark_3 putati 96.9 0.0092 2E-07 55.1 10.6 115 37-166 374-496 (503)
31 PRK00969 hypothetical protein; 96.6 0.023 4.9E-07 52.7 10.4 114 37-166 377-498 (508)
32 PRK00969 hypothetical protein; 96.0 0.07 1.5E-06 49.6 10.5 119 28-168 50-170 (508)
33 COG4070 Predicted peptidyl-pro 95.6 0.04 8.7E-07 49.6 7.0 111 39-165 377-498 (512)
34 TIGR03268 methan_mark_3 putati 95.6 0.15 3.2E-06 47.4 10.7 118 28-167 46-166 (503)
35 PF12903 DUF3830: Protein of u 95.5 0.066 1.4E-06 42.1 6.9 111 37-165 7-130 (147)
36 COG4070 Predicted peptidyl-pro 95.5 0.032 7E-07 50.2 5.8 98 40-166 205-306 (512)
37 COG5633 Predicted periplasmic 93.0 0.099 2.2E-06 39.3 2.9 37 1-37 1-37 (123)
38 PF04126 Cyclophil_like: Cyclo 88.8 4.6 0.0001 30.5 8.6 100 30-165 2-113 (120)
39 PF08139 LPAM_1: Prokaryotic m 85.0 0.79 1.7E-05 24.9 1.8 18 1-18 7-24 (25)
40 PRK11627 hypothetical protein; 70.5 7.9 0.00017 31.9 4.4 22 1-22 2-23 (192)
41 PRK10954 periplasmic protein d 69.4 16 0.00034 30.0 6.1 70 1-73 1-78 (207)
42 PRK10449 heat-inducible protei 59.5 9.2 0.0002 29.6 2.7 21 1-21 1-21 (140)
43 PRK11372 lysozyme inhibitor; P 58.2 35 0.00075 25.4 5.5 45 1-46 3-48 (109)
44 PF08194 DIM: DIM protein; In 56.3 18 0.00039 21.4 2.9 14 1-14 1-14 (36)
45 TIGR03352 VI_chp_3 type VI sec 55.7 26 0.00057 27.4 4.7 22 40-61 49-72 (146)
46 PRK13792 lysozyme inhibitor; P 53.3 33 0.0007 26.4 4.7 23 1-23 1-25 (127)
47 PF11153 DUF2931: Protein of u 52.3 15 0.00032 30.5 3.0 23 1-24 1-23 (216)
48 COG5567 Predicted small peripl 51.8 12 0.00026 24.3 1.8 15 1-15 1-15 (58)
49 TIGR03516 ppisom_GldI peptidyl 51.7 15 0.00032 29.8 2.8 21 1-21 1-21 (177)
50 PF06291 Lambda_Bor: Bor prote 50.7 12 0.00026 27.3 2.0 20 1-20 1-20 (97)
51 PF10913 DUF2706: Protein of u 48.4 27 0.00059 22.4 3.0 22 1-22 1-25 (60)
52 PF05643 DUF799: Putative bact 47.1 21 0.00045 30.0 3.0 62 1-65 1-70 (215)
53 COG4594 FecB ABC-type Fe3+-cit 46.3 29 0.00064 30.1 3.8 10 31-40 34-43 (310)
54 PF02402 Lysis_col: Lysis prot 46.3 8.5 0.00018 23.8 0.5 20 1-20 1-21 (46)
55 PRK12407 flgH flagellar basal 46.1 23 0.00049 29.9 3.2 19 1-19 1-19 (221)
56 TIGR02052 MerP mercuric transp 45.3 16 0.00035 24.4 1.9 21 1-21 1-21 (92)
57 PRK13861 type IV secretion sys 45.2 46 0.001 29.2 5.1 46 1-46 2-60 (292)
58 PRK09810 entericidin A; Provis 45.1 21 0.00046 21.8 2.1 18 1-18 2-19 (41)
59 PRK11671 mltC murein transglyc 44.8 55 0.0012 29.7 5.6 23 30-52 75-97 (359)
60 PF12099 DUF3575: Protein of u 44.2 24 0.00053 28.8 3.0 18 1-18 1-18 (189)
61 PF06138 Chordopox_E11: Chordo 43.1 73 0.0016 24.4 5.1 48 29-76 4-61 (130)
62 PTZ00443 Thioredoxin domain-co 42.5 46 0.001 28.0 4.5 51 1-51 1-66 (224)
63 PF13617 Lipoprotein_19: YnbE- 42.3 58 0.0013 21.5 4.0 16 3-18 2-17 (59)
64 PRK10756 hypothetical protein; 37.8 73 0.0016 25.3 4.6 30 36-65 36-65 (157)
65 PHA03001 putative virion core 37.6 75 0.0016 24.4 4.5 48 29-76 4-60 (132)
66 PRK09723 putative fimbrial-lik 35.2 38 0.00083 31.3 3.1 20 1-20 1-20 (421)
67 PRK09929 hypothetical protein; 34.0 53 0.0012 23.7 3.1 70 1-75 1-74 (91)
68 PRK15346 outer membrane secret 33.1 1.6E+02 0.0034 27.9 6.9 33 1-33 1-33 (499)
69 PRK15299 fimbrial chaperone pr 33.0 55 0.0012 27.5 3.5 54 1-54 1-55 (227)
70 PRK11443 lipoprotein; Provisio 32.0 47 0.001 25.3 2.7 20 1-21 1-20 (124)
71 PRK02710 plastocyanin; Provisi 31.9 87 0.0019 23.3 4.2 11 29-39 31-41 (119)
72 PF12396 DUF3659: Protein of u 31.4 65 0.0014 21.6 3.0 28 143-172 16-43 (64)
73 COG5429 Uncharacterized secret 31.2 1.4E+02 0.003 25.6 5.5 31 26-63 40-70 (261)
74 TIGR03780 Bac_Flav_CT_N Bacter 30.8 1.1E+02 0.0023 26.9 4.9 18 1-18 1-18 (285)
75 PRK13883 conjugal transfer pro 30.6 43 0.00094 26.5 2.3 19 1-19 1-19 (151)
76 PF12276 DUF3617: Protein of u 30.6 84 0.0018 24.4 4.1 15 1-15 1-15 (162)
77 PRK10386 curli assembly protei 29.4 85 0.0018 24.2 3.7 22 1-22 1-22 (130)
78 PF11873 DUF3393: Domain of un 29.3 1.6E+02 0.0035 24.5 5.6 24 29-52 88-111 (204)
79 PRK15208 long polar fimbrial c 29.1 70 0.0015 26.9 3.6 22 26-47 25-46 (228)
80 PF10880 DUF2673: Protein of u 29.0 75 0.0016 20.7 2.8 24 1-24 1-25 (65)
81 PF05325 DUF730: Protein of un 28.7 1.7E+02 0.0036 21.4 4.9 38 182-219 62-99 (122)
82 PF05913 DUF871: Bacterial pro 28.5 43 0.00094 30.3 2.3 52 112-165 297-349 (357)
83 TIGR01781 Trep_dent_lipo Trepo 28.3 29 0.00062 31.0 1.1 24 3-26 7-30 (412)
84 PF09710 Trep_dent_lipo: Trepo 26.9 35 0.00075 30.7 1.3 20 3-22 4-23 (394)
85 TIGR03659 IsdE heme ABC transp 26.0 67 0.0014 27.5 3.0 21 1-21 3-23 (289)
86 PF00135 COesterase: Carboxyle 25.6 50 0.0011 30.5 2.2 20 146-165 209-228 (535)
87 PF11106 YjbE: Exopolysacchari 25.5 63 0.0014 22.5 2.1 18 1-18 1-18 (80)
88 COG5510 Predicted small secret 25.5 65 0.0014 19.9 2.0 18 1-18 2-22 (44)
89 PRK10957 iron-enterobactin tra 25.1 97 0.0021 26.8 3.9 29 12-42 12-40 (317)
90 PF13956 Ibs_toxin: Toxin Ibs, 24.1 42 0.00092 16.7 0.8 6 1-6 2-7 (19)
91 COG3045 CreA Uncharacterized p 23.9 2.4E+02 0.0051 22.4 5.3 10 39-48 41-50 (165)
92 PF03207 OspD: Borrelia outer 23.8 69 0.0015 25.8 2.4 21 1-21 1-22 (254)
93 PF11777 DUF3316: Protein of u 23.7 59 0.0013 24.1 1.9 14 1-14 1-14 (114)
94 PRK15188 fimbrial chaperone pr 23.0 76 0.0016 26.8 2.6 22 26-47 31-52 (228)
95 PRK09918 putative fimbrial cha 22.9 96 0.0021 26.1 3.3 20 27-46 29-48 (230)
96 TIGR00548 lolB outer membrane 22.9 67 0.0014 26.4 2.3 19 1-19 1-19 (202)
97 PRK13835 conjugal transfer pro 22.5 81 0.0018 24.8 2.5 20 1-20 1-20 (145)
98 PF07197 DUF1409: Protein of u 21.5 43 0.00094 21.4 0.7 38 183-220 11-48 (51)
99 PF13970 DUF4221: Domain of un 21.3 82 0.0018 27.7 2.6 45 8-53 1-45 (333)
100 PRK09934 fimbrial-like adhesin 20.9 66 0.0014 25.6 1.8 9 1-9 1-9 (171)
101 PHA00407 phage lambda Rz1-like 20.7 1.6E+02 0.0035 20.5 3.4 29 8-36 39-67 (84)
102 PF11471 Sugarporin_N: Maltopo 20.7 1.9E+02 0.004 19.1 3.6 28 195-222 29-56 (60)
103 COG4314 NosL Predicted lipopro 20.7 1E+02 0.0022 24.6 2.7 20 1-20 1-21 (176)
104 PRK15211 fimbrial chaperone pr 20.5 75 0.0016 26.8 2.1 26 22-47 22-47 (229)
105 cd02962 TMX2 TMX2 family; comp 20.3 2.9E+02 0.0063 21.6 5.3 37 38-74 48-87 (152)
106 PF07400 IL11: Interleukin 11; 20.1 53 0.0012 27.0 1.1 34 1-34 1-34 (199)
No 1
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.2e-45 Score=302.78 Aligned_cols=182 Identities=27% Similarity=0.430 Sum_probs=146.0
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEE
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQ 80 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq 80 (229)
|++...++++++.+.++.++...+ .++++|.|+|+.|+|+||||++.||++|+||++||+.|||+|+.||||+|+|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQ 80 (190)
T PRK10903 2 FKSTLAAMAAVFALSALSPAALAA-KGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQ 80 (190)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-CCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEE
Confidence 445544444333333332222233 4567899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCccccccccCccccCC-cCCCCCCccEEEEecCCCCCCCcccEEEEcCCCCCCCC-----CCcEEEEEE
Q 027035 81 VADVVGGRSAPMNEVQRVEAEKTVVGE-FSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDG-----QYAVFGKVT 154 (229)
Q Consensus 81 ~Gd~~~~~~~~~~~~~~~~~~~~~~~e-~~~l~h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~-----~~~vFG~Vi 154 (229)
|||+....+.. ..+..+++| ...++|.+|+|||++.+++++++|||||++++.++||+ +|+|||+|+
T Consensus 81 gG~~~~~~~~~-------~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~ 153 (190)
T PRK10903 81 GGGFTEQMQQK-------KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVV 153 (190)
T ss_pred eCCcCCCCCCC-------CCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEe
Confidence 99987643211 124566777 45677799999999977799999999999999999984 899999999
Q ss_pred cCHHHHHHHhcCCCCCCCC-CCCCCcceEEEEeeeec
Q 027035 155 KGDETLRKLEGLPTRKEGI-FVMPTERITIHSSYYYD 190 (229)
Q Consensus 155 ~G~~vl~~I~~~~~~~~~~-~~~P~~~i~I~~~~vl~ 190 (229)
+|||||++|+++++++++. .++|.++|.|.+|+|++
T Consensus 154 eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 154 KGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred cCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEeC
Confidence 9999999999999976321 13999999999999873
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-46 Score=298.05 Aligned_cols=157 Identities=29% Similarity=0.439 Sum_probs=143.7
Q ss_pred CCcEEEEEEe-----CceEEEEEcCCCCchhHHHHHHhhcCC----CcCCceEeEEecCCEEEeecCCCCCCCCCccccc
Q 027035 27 GSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQR 97 (229)
Q Consensus 27 ~~~~v~~~T~-----~G~I~ieL~~d~aP~t~~nF~~l~~~g----~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~ 97 (229)
-+.+|.|+.. .|||+|+||++.+|+||+||.+||.++ .|.++.||||+|||+|||||+..|+|... .
T Consensus 38 vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg----~ 113 (217)
T KOG0880|consen 38 VTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGG----K 113 (217)
T ss_pred ceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCC----e
Confidence 4568888876 789999999999999999999999843 69999999999999999999999766531 2
Q ss_pred cccCccccCCcCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCC
Q 027035 98 VEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVM 176 (229)
Q Consensus 98 ~~~~~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~ 176 (229)
...|..+++|+..|+| ++|.||||+ .+||+||||||||+...+||||+|+|||+|++|||+|.+|+.+++|.++ +
T Consensus 114 SIyG~~F~DENf~LkH~rpG~lSMAn-~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~d---k 189 (217)
T KOG0880|consen 114 SIYGEKFPDENFKLKHDRPGRLSMAN-AGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERD---K 189 (217)
T ss_pred EeecCCCCCccceeecCCCceEeeec-cCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCC---C
Confidence 2358889999999999 999999999 8999999999999999999999999999999999999999999999999 9
Q ss_pred CCcceEEEEeeeecC
Q 027035 177 PTERITIHSSYYYDT 191 (229)
Q Consensus 177 P~~~i~I~~~~vl~~ 191 (229)
|+++++|.+|+.++.
T Consensus 190 P~e~v~I~~~g~l~~ 204 (217)
T KOG0880|consen 190 PLEDVVIANCGELPV 204 (217)
T ss_pred ccccEEEeecCcccc
Confidence 999999999999865
No 3
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=8.5e-46 Score=296.17 Aligned_cols=155 Identities=34% Similarity=0.521 Sum_probs=139.6
Q ss_pred EEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccCccccCC-
Q 027035 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE- 107 (229)
Q Consensus 30 ~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~~e- 107 (229)
+|.|+|+.|+|+||||.+.||++|+||++||+.|+|+++.||||+|++++||||+.+ +.+.. ...+..+++|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~------~~~g~~~~~E~ 74 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGE------SIWGKPFKDEF 74 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCc------cccCCccCccc
Confidence 489999999999999999999999999999999999999999999999999999875 22211 1135567777
Q ss_pred cCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEEEEe
Q 027035 108 FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (229)
Q Consensus 108 ~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (229)
.+.++| .+|+|+|++ .++++++|||||++++.|+||++|+|||+|++|||+|++|++.++++++ +|.++|+|.+|
T Consensus 75 ~~~~~h~~~G~v~ma~-~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~---~P~~~i~I~~~ 150 (159)
T cd01923 75 KPNLSHDGRGVLSMAN-SGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTD---RPKEEIKIEDT 150 (159)
T ss_pred ccCcCcCCCcEEEEee-CCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCC---CCCCCeEEEEe
Confidence 457788 899999999 6799999999999999999999999999999999999999999998777 99999999999
Q ss_pred eeecCCcc
Q 027035 187 YYYDTEME 194 (229)
Q Consensus 187 ~vl~~~~~ 194 (229)
+|+.+||+
T Consensus 151 ~i~~dpf~ 158 (159)
T cd01923 151 SVFVDPFE 158 (159)
T ss_pred EEEeCCCC
Confidence 99999986
No 4
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=7e-46 Score=298.67 Aligned_cols=161 Identities=27% Similarity=0.428 Sum_probs=138.2
Q ss_pred EEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCC-CCC-CCccccccccCccccCC-c
Q 027035 32 VFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGG-RSA-PMNEVQRVEAEKTVVGE-F 108 (229)
Q Consensus 32 ~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~-~~~-~~~~~~~~~~~~~~~~e-~ 108 (229)
.|+|+.|+|+||||.+.||++|+||++||+.++|+++.||||++++++||||+... .+. ..........+..+.+| .
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 37899999999999999999999999999999999999999999999999998752 211 11111111123455666 4
Q ss_pred CCCCC-CccEEEEecCCCCCCCcccEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEEEEe
Q 027035 109 SDVKH-VRGILSMGRYSDPNSAASSFSILLGD-APHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (229)
Q Consensus 109 ~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~-~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (229)
+.++| .+|+|+||+ .++++++|||||++++ .++||++|+|||+|++|||||++|++++++.++ +|.++|+|.+|
T Consensus 81 ~~~~h~~~G~l~ma~-~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~---~P~~~i~I~~~ 156 (166)
T cd01921 81 PLLKHSKKGTVSMVN-AGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDG---RPLKDIRIKHT 156 (166)
T ss_pred CccccCCceEEEEeE-CCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCC---CCCCCeEEEEE
Confidence 67888 899999999 5788999999999976 799999999999999999999999999998888 99999999999
Q ss_pred eeecCCcchh
Q 027035 187 YYYDTEMEIC 196 (229)
Q Consensus 187 ~vl~~~~~~~ 196 (229)
+|+++||+++
T Consensus 157 ~i~~~pf~~~ 166 (166)
T cd01921 157 HILDDPFPDP 166 (166)
T ss_pred EEECCCCCCC
Confidence 9999999864
No 5
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-46 Score=322.84 Aligned_cols=158 Identities=31% Similarity=0.438 Sum_probs=144.6
Q ss_pred CCcEEEEEEe-----CceEEEEEcCCCCchhHHHHHHhhcCC-----------CcCCceEeEEecCCEEEeecCCCCCCC
Q 027035 27 GSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLG-----------CYNTNHFFRVDKGFVAQVADVVGGRSA 90 (229)
Q Consensus 27 ~~~~v~~~T~-----~G~I~ieL~~d~aP~t~~nF~~l~~~g-----------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~ 90 (229)
++|+|.|+++ .|||+||||.|.||+||+||..||++- .|+|+.||||+++|||||||++.|+|.
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 5789999998 799999999999999999999999742 699999999999999999999998876
Q ss_pred CCccccccccCccccCCcCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCC
Q 027035 91 PMNEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTR 169 (229)
Q Consensus 91 ~~~~~~~~~~~~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~ 169 (229)
..+ ..+|..+.+|++.++| ++++||||| .+||+||||||||+.+.|||||+|+|||+||+|++||+.|+++.++
T Consensus 87 GGe----SIYG~~FdDEnF~lKHdrpflLSMAN-~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d 161 (372)
T KOG0546|consen 87 GGE----SIYGEKFDDENFELKHDRPFLLSMAN-RGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETD 161 (372)
T ss_pred Ccc----cccccccccccceeccCcchhhhhhc-CCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccc
Confidence 422 2246777888889999 999999999 6799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceEEEEeeeecCC
Q 027035 170 KEGIFVMPTERITIHSSYYYDTE 192 (229)
Q Consensus 170 ~~~~~~~P~~~i~I~~~~vl~~~ 192 (229)
..+ +|..+|+|.+||++...
T Consensus 162 ~~s---kP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 162 EES---KPLADVVISDCGELVKK 181 (372)
T ss_pred cCC---CCccceEeccccccccc
Confidence 998 99999999999999643
No 6
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=280.56 Aligned_cols=157 Identities=32% Similarity=0.519 Sum_probs=143.9
Q ss_pred CCCCCCcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccC
Q 027035 23 DPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAE 101 (229)
Q Consensus 23 ~p~~~~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~ 101 (229)
.|....+.|.++|++|.|++|||-+.||+||.||..|++.|||+|..||||+++|+|||||+++ |.|.. ...|
T Consensus 4 ~~~~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGa------SIYG 77 (164)
T KOG0881|consen 4 PPEWQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGA------SIYG 77 (164)
T ss_pred CccCCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCcc------cccc
Confidence 3445668999999999999999999999999999999999999999999999999999999997 44431 1257
Q ss_pred ccccCC-cCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCc
Q 027035 102 KTVVGE-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTE 179 (229)
Q Consensus 102 ~~~~~e-~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~ 179 (229)
..+.+| ++.|+| .+|+||||+ .+||+|||||||+|++.+||||+|++||||..||+|+.+|..+.+++.+ +|..
T Consensus 78 ~kF~DEi~~dLkhTGAGILsMAN-aGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~D---RPi~ 153 (164)
T KOG0881|consen 78 DKFEDEIHSDLKHTGAGILSMAN-AGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSD---RPID 153 (164)
T ss_pred chhhhhhhhhhcccchhhhhhhc-cCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCC---CCcc
Confidence 778888 789999 999999999 8999999999999999999999999999999999999999999999998 9999
Q ss_pred ceEEEEeeee
Q 027035 180 RITIHSSYYY 189 (229)
Q Consensus 180 ~i~I~~~~vl 189 (229)
+++|.+....
T Consensus 154 ~~kIika~~~ 163 (164)
T KOG0881|consen 154 EVKIIKAYPS 163 (164)
T ss_pred ceeeEeeecC
Confidence 9999988654
No 7
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-45 Score=288.96 Aligned_cols=153 Identities=37% Similarity=0.581 Sum_probs=132.4
Q ss_pred EEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCCcC
Q 027035 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFS 109 (229)
Q Consensus 30 ~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e~~ 109 (229)
.|.++|++|+|+|+||++.||+||+||++||+.+||+|+.||||+++|++||||+.++.+... .++.+++|+.
T Consensus 1 ~v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg-------~~~~f~~E~~ 73 (158)
T COG0652 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGG-------PGPPFKDENF 73 (158)
T ss_pred CceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCC-------CCCCCccccc
Confidence 378999999999999999999999999999999999999999999999999999998644311 3577888854
Q ss_pred CCC---CCccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCC-CCCCCcceEEEE
Q 027035 110 DVK---HVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGI-FVMPTERITIHS 185 (229)
Q Consensus 110 ~l~---h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~-~~~P~~~i~I~~ 185 (229)
... |.+|+||||+.+.|++++|||||++.++||||++|+|||+|++|||+|++|++..+...+. .+.|..+++|.+
T Consensus 74 ~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~ 153 (158)
T COG0652 74 ALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153 (158)
T ss_pred ccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEee
Confidence 433 3599999999656999999999999999999999999999999999999999988876541 236778888888
Q ss_pred eeee
Q 027035 186 SYYY 189 (229)
Q Consensus 186 ~~vl 189 (229)
..++
T Consensus 154 ~~~~ 157 (158)
T COG0652 154 VKIV 157 (158)
T ss_pred eeee
Confidence 7664
No 8
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=2.5e-44 Score=285.90 Aligned_cols=150 Identities=39% Similarity=0.613 Sum_probs=133.7
Q ss_pred cEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccCccccCC
Q 027035 29 ARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE 107 (229)
Q Consensus 29 ~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~~e 107 (229)
+.|.|+|+.|+|+||||++.||++|+||++||+.+||+++.|||+++++++||||+.+ +.+.. ...+..+++|
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~------~~~~~~~~~e 74 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGE------SIWGKKFEDE 74 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCC------ccCCCccccc
Confidence 4689999999999999999999999999999999999999999999999999999875 22211 1135567777
Q ss_pred c-CCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEEEE
Q 027035 108 F-SDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHS 185 (229)
Q Consensus 108 ~-~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~ 185 (229)
. +.++| .+|+|+|++ .++++++|||||++++.|+||++|+|||+|++|||+|++|+++++++++ +|..+|+|.+
T Consensus 75 ~~~~~~~~~~G~v~ma~-~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~---~P~~~i~I~~ 150 (153)
T cd01928 75 FRETLKHDSRGVVSMAN-NGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKY---RPLEEIRIKD 150 (153)
T ss_pred cccCCCcCCCcEEEEee-CCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCC---CCcCCeEEEE
Confidence 4 56788 899999999 5799999999999999999999999999999999999999999998877 9999999999
Q ss_pred eee
Q 027035 186 SYY 188 (229)
Q Consensus 186 ~~v 188 (229)
|.+
T Consensus 151 ~~~ 153 (153)
T cd01928 151 VTI 153 (153)
T ss_pred eEC
Confidence 853
No 9
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-45 Score=314.47 Aligned_cols=166 Identities=31% Similarity=0.483 Sum_probs=153.2
Q ss_pred CCcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccCcccc
Q 027035 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVV 105 (229)
Q Consensus 27 ~~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~ 105 (229)
...+|.|.|+.|.+.+||++|.+|++|+||+.||+.|||+|+.|||.+.+|+||||||++ |.|. ...+|..+.
T Consensus 276 kkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GG------eSiWgKpFk 349 (518)
T KOG0883|consen 276 KKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGG------ESIWGKPFK 349 (518)
T ss_pred ccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCC------ccccCCccc
Confidence 457999999999999999999999999999999999999999999999999999999998 4443 123688899
Q ss_pred CC-cCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEE
Q 027035 106 GE-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITI 183 (229)
Q Consensus 106 ~e-~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I 183 (229)
+| .+.|.| .||+||||+ ++||+|||||||++.++.+||++|+|||+|+.|+++|.+|+++++++++ +|..+|+|
T Consensus 350 DEf~~~l~H~gRGvlSMAN-sGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D---rP~e~I~i 425 (518)
T KOG0883|consen 350 DEFCSNLSHDGRGVLSMAN-SGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD---RPKEEIKI 425 (518)
T ss_pred cccCCCCCcCCcceEeecc-CCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC---CcccceEE
Confidence 99 689999 999999999 8999999999999999999999999999999999999999999999998 99999999
Q ss_pred EEeeeecCCcchhHHHHHH
Q 027035 184 HSSYYYDTEMEICEKERSV 202 (229)
Q Consensus 184 ~~~~vl~~~~~~~~~~~~~ 202 (229)
....|.-+||++.+++.+.
T Consensus 426 ~~~~VFVdPfeEa~~e~~k 444 (518)
T KOG0883|consen 426 EDAIVFVDPFEEADKEREK 444 (518)
T ss_pred eeeEEeeCcHHHHHHHHHH
Confidence 9999999999877664443
No 10
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.6e-43 Score=279.85 Aligned_cols=145 Identities=35% Similarity=0.529 Sum_probs=128.8
Q ss_pred EEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccCccccCC-cC
Q 027035 32 VFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE-FS 109 (229)
Q Consensus 32 ~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~~e-~~ 109 (229)
+|+|++|+|+||||.+.||++|+||++||+.+||+++.||||+|++++||||+.+ +.+.. ...+..+++| .+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~------~~~~~~~~~e~~~ 74 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGE------SIWGKEFEDEFSP 74 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCC------cccCCcccccccc
Confidence 4799999999999999999999999999999999999999999999999999864 22211 1135567777 45
Q ss_pred CCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEEEEe
Q 027035 110 DVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (229)
Q Consensus 110 ~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (229)
.++| .+|+|+|++ .++++++|||||++++.|+||++|+|||+|++|||+|++|+++++++++ +|.++|+|.++
T Consensus 75 ~~~h~~~G~l~ma~-~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~---~P~~~i~I~~~ 148 (148)
T cd01927 75 SLKHDRPYTLSMAN-AGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKND---RPYEDIKIINI 148 (148)
T ss_pred ccCcCCCeEEEEee-CCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCC---CCcCCeEEEeC
Confidence 7888 679999999 5799999999999999999999999999999999999999999998877 99999999863
No 11
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.1e-42 Score=281.13 Aligned_cols=159 Identities=27% Similarity=0.414 Sum_probs=140.5
Q ss_pred CcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccCccccC
Q 027035 28 SARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVG 106 (229)
Q Consensus 28 ~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~~ 106 (229)
+.+|.|+|++|+|+||||.+.+|++|+||++||+.+||+++.||||++++++||||+.+ +.+.. ...+..+++
T Consensus 5 ~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~------s~~g~~~~~ 78 (171)
T cd01925 5 TGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGE------SIYGEPFKD 78 (171)
T ss_pred ccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCc------ccCCCccCc
Confidence 46899999999999999999999999999999999999999999999999999999874 22211 113456777
Q ss_pred C-cCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCCCCCCcceEE
Q 027035 107 E-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVT-KGDETLRKLEGLPTRKEGIFVMPTERITI 183 (229)
Q Consensus 107 e-~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi-~G~~vl~~I~~~~~~~~~~~~~P~~~i~I 183 (229)
| .+.++| ++|+|+|++ .++++++|||||++++.++||++|+|||+|+ ++++++++|+++++++++ +|.++|+|
T Consensus 79 E~~~~~~~~~~G~l~ma~-~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~---~P~~~i~I 154 (171)
T cd01925 79 EFHSRLRFNRRGLVGMAN-AGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDE---RPVYPPKI 154 (171)
T ss_pred ccccCcCCCCCcEEEECc-CCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCC---CcCCCeEE
Confidence 7 456776 899999999 6688999999999999999999999999999 468899999999998887 99999999
Q ss_pred EEeeeecCCcchh
Q 027035 184 HSSYYYDTEMEIC 196 (229)
Q Consensus 184 ~~~~vl~~~~~~~ 196 (229)
.+|+++.+||++.
T Consensus 155 ~~~~i~~~pf~~~ 167 (171)
T cd01925 155 TSVEVLENPFDDI 167 (171)
T ss_pred EEEEEEcCCchhh
Confidence 9999999999764
No 12
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.4e-42 Score=278.61 Aligned_cols=152 Identities=33% Similarity=0.529 Sum_probs=131.2
Q ss_pred EEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCC-cC
Q 027035 31 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-FS 109 (229)
Q Consensus 31 v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e-~~ 109 (229)
|.|+|+.|+|+|+||.+.||++|+||++||+.+||+++.||||+|+|++||||+..+.+.. ..+..+++| ..
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~~-------~~~~~~~~e~~~ 74 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQK-------ATKEPIKNEANN 74 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCCCCcC-------CCCCCcCCcccc
Confidence 7899999999999999999999999999999999999999999999999999976543221 124566677 45
Q ss_pred CCCCCccEEEEecCCCCCCCcccEEEEcCCCCCCC-------C-CCcEEEEEEcCHHHHHHHhcCCCCCCCC-CCCCCcc
Q 027035 110 DVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD-------G-QYAVFGKVTKGDETLRKLEGLPTRKEGI-FVMPTER 180 (229)
Q Consensus 110 ~l~h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld-------~-~~~vFG~Vi~G~~vl~~I~~~~~~~~~~-~~~P~~~ 180 (229)
.++|.+|+||||+.++|++++|||||++.++++|| + +|+|||+|++|||||++|++++++..+. .++|..+
T Consensus 75 ~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~ 154 (164)
T PRK10791 75 GLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKED 154 (164)
T ss_pred cccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCC
Confidence 67789999999996679999999999999998886 2 6999999999999999999999976321 1399999
Q ss_pred eEEEEeeee
Q 027035 181 ITIHSSYYY 189 (229)
Q Consensus 181 i~I~~~~vl 189 (229)
|+|.+|.|.
T Consensus 155 v~I~~~~i~ 163 (164)
T PRK10791 155 VIIESVTVS 163 (164)
T ss_pred eEEEEEEEe
Confidence 999999875
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=8.8e-43 Score=275.00 Aligned_cols=143 Identities=33% Similarity=0.574 Sum_probs=127.0
Q ss_pred EEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccCccccCC-cC
Q 027035 32 VFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE-FS 109 (229)
Q Consensus 32 ~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~~e-~~ 109 (229)
.|+|+.|+|+||||.+.||++|+||++||+.|||+++.||||+|++++||||+.+ +.+.. ...+..+++| .+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~------~~~~~~~~~e~~~ 74 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGA------SIYGKKFEDEIHP 74 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcc------cccCCCccccccc
Confidence 3789999999999999999999999999999999999999999999999999864 22211 1135567777 56
Q ss_pred CCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEEEE
Q 027035 110 DVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHS 185 (229)
Q Consensus 110 ~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~ 185 (229)
.++| ++|+|||++ .++++++|||||+++++|+||++|+|||+|++|||||++|++++++ ++ +|..+|+|.+
T Consensus 75 ~~~h~~~G~l~ma~-~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~---~P~~~I~I~~ 146 (146)
T cd01922 75 ELKHTGAGILSMAN-AGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TD---RPIDEVKILK 146 (146)
T ss_pred CcCCCCCeEEEEee-CCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CC---CcCCCeEEeC
Confidence 7888 799999999 6799999999999999999999999999999999999999999998 55 9999999974
No 14
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=3.5e-42 Score=290.55 Aligned_cols=160 Identities=26% Similarity=0.358 Sum_probs=140.7
Q ss_pred CCCcEEEEEEe-----CceEEEEEcCCCCchhHHHHHHhhcCC-----------CcCCceEeEEecC-CEEEeecCCCCC
Q 027035 26 LGSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLG-----------CYNTNHFFRVDKG-FVAQVADVVGGR 88 (229)
Q Consensus 26 ~~~~~v~~~T~-----~G~I~ieL~~d~aP~t~~nF~~l~~~g-----------~Y~g~~f~ri~~~-~~iq~Gd~~~~~ 88 (229)
..+++|+|+|+ .|+|+||||.+.||+||+||++||++. +|+++.||||+++ +++|+||+.+..
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~g 129 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFN 129 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCCC
Confidence 34679999988 567999999999999999999999742 3999999999985 899999987532
Q ss_pred CCCCccccccccCccccCCcCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCC
Q 027035 89 SAPMNEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLP 167 (229)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~ 167 (229)
.. ..|..+++|...++| .+|+|||++ .+|+++|||||||+.++|+||++|+|||+|++|||||++|++++
T Consensus 130 ~s--------~~G~~f~dE~~~~~h~~~G~LsMan-~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~ 200 (249)
T PTZ00221 130 VS--------STGTPIADEGYRHRHTERGLLTMIS-EGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLP 200 (249)
T ss_pred cc--------CCCCcccCccccccCCCCCEEEeCc-CCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCC
Confidence 11 146778888767888 999999999 67999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcceEEEEeeeecCCcchhH
Q 027035 168 TRKEGIFVMPTERITIHSSYYYDTEMEICE 197 (229)
Q Consensus 168 ~~~~~~~~~P~~~i~I~~~~vl~~~~~~~~ 197 (229)
++..+ +|.++|+|.+|+++.+|-+...
T Consensus 201 ~d~~g---rP~~~V~I~~Cgvl~~~~p~~~ 227 (249)
T PTZ00221 201 LDDVG---RPLLPVTVSFCGALTGEKPPGR 227 (249)
T ss_pred cCCCC---CCCCCeEEEECeEecCCCCCcc
Confidence 98777 9999999999999998765543
No 15
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.8e-41 Score=277.27 Aligned_cols=156 Identities=26% Similarity=0.347 Sum_probs=133.8
Q ss_pred CCCcEEEEEEe-----CceEEEEEcCCCCchhHHHHHHhhcCCC--------cCCceEeEEecCCEEEeecCCCCCCCCC
Q 027035 26 LGSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLGC--------YNTNHFFRVDKGFVAQVADVVGGRSAPM 92 (229)
Q Consensus 26 ~~~~~v~~~T~-----~G~I~ieL~~d~aP~t~~nF~~l~~~g~--------Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~ 92 (229)
..++.|.|+++ .|+|+||||.+.+|++|+||++||++.+ |+++.||||++++++||||+..+.+...
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~ 95 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence 34678888865 6999999999999999999999997644 9999999999999999999865433211
Q ss_pred ccccccccCccccCCcCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCC
Q 027035 93 NEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVT-KGDETLRKLEGLPTRK 170 (229)
Q Consensus 93 ~~~~~~~~~~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi-~G~~vl~~I~~~~~~~ 170 (229)
. ...+..+++|...++| .+|+|||++ .++++++|||||++++.|+||++|+|||+|+ +|||||++|++++++.
T Consensus 96 ~----~~~g~~f~~e~~~~~h~~~G~lsma~-~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~ 170 (186)
T PLN03149 96 V----SIYGSKFEDENFIAKHTGPGLLSMAN-SGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP 170 (186)
T ss_pred c----cccCCccCCcccccccCCCCEEEEee-CCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCC
Confidence 1 0124556677556677 899999999 6799999999999999999999999999999 7999999999999988
Q ss_pred CCCCCCCCcceEEEEeeee
Q 027035 171 EGIFVMPTERITIHSSYYY 189 (229)
Q Consensus 171 ~~~~~~P~~~i~I~~~~vl 189 (229)
++ +|.++|+|.+||++
T Consensus 171 ~~---~P~~~i~I~~cG~~ 186 (186)
T PLN03149 171 NN---RPKLACVISECGEM 186 (186)
T ss_pred CC---CCcCCeEEEeCEeC
Confidence 87 99999999999974
No 16
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.2e-41 Score=274.61 Aligned_cols=153 Identities=28% Similarity=0.424 Sum_probs=132.5
Q ss_pred CcEEEEEEe-----CceEEEEEcCCCCchhHHHHHHhhc---------CCCcCCceEeEEecCCEEEeecCCCCCCCCCc
Q 027035 28 SARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVR---------LGCYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93 (229)
Q Consensus 28 ~~~v~~~T~-----~G~I~ieL~~d~aP~t~~nF~~l~~---------~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~ 93 (229)
+++|.|+.+ .|+|+||||.+.||++|+||++||+ .++|+++.||||+|++++||||+..+.+....
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~ 94 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGE 94 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCC
Confidence 568888865 5999999999999999999999996 46999999999999999999998754332111
Q ss_pred cccccccCccccCCcCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCC
Q 027035 94 EVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEG 172 (229)
Q Consensus 94 ~~~~~~~~~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~ 172 (229)
...+..+++|...++| .+|+|+|++ .++++++|||||++++.|+||++|+|||+|++|||||++|++.++. ++
T Consensus 95 ----~~~g~~~~~e~~~~~h~~~G~lsma~-~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~ 168 (183)
T PTZ00060 95 ----SIYGRKFTDENFKLKHDQPGLLSMAN-AGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SG 168 (183)
T ss_pred ----cccccccCCccccccCCCCCEEEecc-CCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CC
Confidence 1125566777667888 789999999 5799999999999999999999999999999999999999999885 44
Q ss_pred CCCCCCcceEEEEeeee
Q 027035 173 IFVMPTERITIHSSYYY 189 (229)
Q Consensus 173 ~~~~P~~~i~I~~~~vl 189 (229)
+|.++|+|.+|+++
T Consensus 169 ---~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 169 ---YPKKPVVVTDCGEL 182 (183)
T ss_pred ---CCcCCeEEEEeEEc
Confidence 89999999999997
No 17
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.9e-41 Score=268.18 Aligned_cols=147 Identities=36% Similarity=0.538 Sum_probs=126.5
Q ss_pred EEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCC-cCCC
Q 027035 33 FQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-FSDV 111 (229)
Q Consensus 33 ~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e-~~~l 111 (229)
|+|+.|+|+||||++.||++|+||++||+.|||+++.||||+|++++||||+..+.+.. ..+..+++| ...+
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~-------~~~~~~~~e~~~~~ 74 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK-------ETLKPIKNEAGNGL 74 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcc-------ccCCcccCcccccc
Confidence 78999999999999999999999999999999999999999999999999987643221 124456666 4456
Q ss_pred CCCccEEEEecCCCCCCCcccEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCCCCC-CCCCCcceEEEE
Q 027035 112 KHVRGILSMGRYSDPNSAASSFSILLGDAPHLDG-----QYAVFGKVTKGDETLRKLEGLPTRKEGI-FVMPTERITIHS 185 (229)
Q Consensus 112 ~h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~-----~~~vFG~Vi~G~~vl~~I~~~~~~~~~~-~~~P~~~i~I~~ 185 (229)
+|.+|+||||++++|++++|||||++++.++||+ +|+|||+|++|||||++|++++++..+. .++|..+|+|.+
T Consensus 75 ~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 75 SNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred cCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 6799999999977799999999999999999995 7999999999999999999999976521 138999999976
Q ss_pred e
Q 027035 186 S 186 (229)
Q Consensus 186 ~ 186 (229)
+
T Consensus 155 ~ 155 (155)
T cd01920 155 A 155 (155)
T ss_pred C
Confidence 3
No 18
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=7.1e-41 Score=269.09 Aligned_cols=143 Identities=29% Similarity=0.457 Sum_probs=126.0
Q ss_pred eCceEEEEEcCCCCchhHHHHHHhhcC--C------CcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCC
Q 027035 36 NYGDIEFGFYPSVAPQTVDHIFKLVRL--G------CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE 107 (229)
Q Consensus 36 ~~G~I~ieL~~d~aP~t~~nF~~l~~~--g------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e 107 (229)
+.|+|+||||.+.||++|+||++||++ + +|+++.||||+|++++|+||+..+.+.... ...+..+++|
T Consensus 13 ~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~----~~~g~~~~~e 88 (164)
T cd01926 13 PAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK----SIYGEKFPDE 88 (164)
T ss_pred eceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCC----cccCCccCCC
Confidence 589999999999999999999999973 4 899999999999999999998754333211 1134556777
Q ss_pred cCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEEEEe
Q 027035 108 FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (229)
Q Consensus 108 ~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (229)
...++| .+|+|||++ .++++++|||||++++.++||++|+|||+|++|||||++|++++++ ++ +|.++|+|.+|
T Consensus 89 ~~~~~h~~~G~lsma~-~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~---~P~~~i~I~~c 163 (164)
T cd01926 89 NFKLKHTGPGLLSMAN-AGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NG---KPKKKVVIADC 163 (164)
T ss_pred CccccCCCccEEEeeE-CCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CC---CCcCCeEEEEC
Confidence 667889 899999999 5799999999999999999999999999999999999999999998 66 99999999999
Q ss_pred e
Q 027035 187 Y 187 (229)
Q Consensus 187 ~ 187 (229)
|
T Consensus 164 G 164 (164)
T cd01926 164 G 164 (164)
T ss_pred C
Confidence 6
No 19
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-42 Score=257.93 Aligned_cols=154 Identities=27% Similarity=0.408 Sum_probs=141.9
Q ss_pred CCcEEEEEEe-----CceEEEEEcCCCCchhHHHHHHhhcCC--------CcCCceEeEEecCCEEEeecCCCCCCCCCc
Q 027035 27 GSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLG--------CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93 (229)
Q Consensus 27 ~~~~v~~~T~-----~G~I~ieL~~d~aP~t~~nF~~l~~~g--------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~ 93 (229)
.+|.|.|+.+ .|||.||||.|.+|+|++||.++|++. .|+++.||||+++|+|||||...|.|....
T Consensus 9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~ 88 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVA 88 (177)
T ss_pred CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEE
Confidence 3789999976 799999999999999999999999864 599999999999999999999998776422
Q ss_pred cccccccCccccCCcCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCC
Q 027035 94 EVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEG 172 (229)
Q Consensus 94 ~~~~~~~~~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~ 172 (229)
...+..+++|+..++| .+|+||||+ +++++||.|||||.....|||++|+|||+|++|+.++++|+++++..++
T Consensus 89 ----sIy~~~F~DENFtlkH~~PGlLSMAN-sG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nn 163 (177)
T KOG0879|consen 89 ----SIYGSTFPDENFTLKHDGPGLLSMAN-SGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNN 163 (177)
T ss_pred ----EEcCCCCCCcceeeecCCCceeeccc-cCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCC
Confidence 2346789999999999 999999999 8999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcceEEEEeee
Q 027035 173 IFVMPTERITIHSSYY 188 (229)
Q Consensus 173 ~~~~P~~~i~I~~~~v 188 (229)
+|+-+|.|..||.
T Consensus 164 ---kPKl~v~i~qCGe 176 (177)
T KOG0879|consen 164 ---KPKLPVVIVQCGE 176 (177)
T ss_pred ---CCCCcEEEeeccc
Confidence 9999999999985
No 20
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=253.03 Aligned_cols=155 Identities=35% Similarity=0.540 Sum_probs=142.6
Q ss_pred cEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccCccccCC
Q 027035 29 ARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE 107 (229)
Q Consensus 29 ~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~~~e 107 (229)
+.|+++|+.|+|.||+|.+.+|++|+||+.+|...||++|.|||-+|+|++|+||+.. |.|.. ..+|..+.+|
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~------siwg~~fede 74 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGN------SIWGKKFEDE 74 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCc------cccCCcchHH
Confidence 3699999999999999999999999999999999999999999999999999999986 43331 1268888888
Q ss_pred c-CCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCCCCCCcceEEE
Q 027035 108 F-SDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKE-GIFVMPTERITIH 184 (229)
Q Consensus 108 ~-~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~-~~~~~P~~~i~I~ 184 (229)
+ .-|+| .||.||||+ .+|++|+|||||+.+..||||-+|++||+||+|+|+|+.|+..++++. . +|+.++.|.
T Consensus 75 ~~~~lkh~~rg~vsman-ngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~kty---rpl~~~~ik 150 (161)
T KOG0884|consen 75 YSEYLKHNVRGVVSMAN-NGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY---RPLNDVHIK 150 (161)
T ss_pred HHHHHhhccceeEEccc-CCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCcccc---ccchheeee
Confidence 4 56899 999999999 789999999999999999999999999999999999999999999887 5 999999999
Q ss_pred EeeeecCCc
Q 027035 185 SSYYYDTEM 193 (229)
Q Consensus 185 ~~~vl~~~~ 193 (229)
++.+-.+||
T Consensus 151 ~itihanp~ 159 (161)
T KOG0884|consen 151 DITIHANPF 159 (161)
T ss_pred eeEEecCcC
Confidence 999998887
No 21
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-41 Score=296.76 Aligned_cols=156 Identities=31% Similarity=0.491 Sum_probs=142.0
Q ss_pred CCCCCCcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccC
Q 027035 23 DPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAE 101 (229)
Q Consensus 23 ~p~~~~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~ 101 (229)
.+..-...+.+||+.|+|.|.||+++||+||+||...|++|||+|..||||+++|+||+|||.+ |.|. ...+|
T Consensus 399 g~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtgg------esiwg 472 (558)
T KOG0882|consen 399 GNKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGG------ESIWG 472 (558)
T ss_pred CceecccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCC------ccccc
Confidence 4444456799999999999999999999999999999999999999999999999999999998 3332 12257
Q ss_pred ccccCC-cCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCc
Q 027035 102 KTVVGE-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTE 179 (229)
Q Consensus 102 ~~~~~e-~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~ 179 (229)
..+.+| ++.|+| ++-+||||+ .+||+||||||||+-+.|||||+|+|||||+.|||||++|+++.++..+ +|++
T Consensus 473 ~dfedefh~~lrhdrpft~sman-ag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~d---rp~e 548 (558)
T KOG0882|consen 473 KDFEDEFHPNLRHDRPFTVSMAN-AGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYD---RPYE 548 (558)
T ss_pred ccchhhcCcccccCCCceEEecc-cCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCC---CCCC
Confidence 788889 789999 888999999 7899999999999999999999999999999999999999999998888 9999
Q ss_pred ceEEEEeee
Q 027035 180 RITIHSSYY 188 (229)
Q Consensus 180 ~i~I~~~~v 188 (229)
+|.|.++.+
T Consensus 549 ~v~iinisv 557 (558)
T KOG0882|consen 549 DVKIINISV 557 (558)
T ss_pred ceeEEEEec
Confidence 999999875
No 22
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-40 Score=284.57 Aligned_cols=164 Identities=29% Similarity=0.432 Sum_probs=149.3
Q ss_pred cEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCC-CCCccccccccCccccC
Q 027035 29 ARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRS-APMNEVQRVEAEKTVVG 106 (229)
Q Consensus 29 ~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~-~~~~~~~~~~~~~~~~~ 106 (229)
+.|.++|++|+|+|+||.+.+|.+|.||++||+..||+.|.||-|..+|++|.|||++ |.| ........++.+..+..
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffea 80 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEA 80 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhh
Confidence 3699999999999999999999999999999999999999999999999999999998 332 33444445556667777
Q ss_pred C-cCCCCC-CccEEEEecCCCCCCCcccEEEEcCCC-CCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEE
Q 027035 107 E-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDA-PHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITI 183 (229)
Q Consensus 107 e-~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~-~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I 183 (229)
| .+.++| ..|+|||++ .+.|.+||||||||+++ ..||++|+|||+|.+|||+|.+|+.+-+++++ +|+++|+|
T Consensus 81 E~~p~l~Hsk~G~vsmvs-~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~---rPykdIRI 156 (479)
T KOG0415|consen 81 EFLPKLKHSKMGTVSMVS-AGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKN---RPYKDIRI 156 (479)
T ss_pred hhcccccccccceEEeec-CCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCC---Ccccceee
Confidence 8 789999 999999999 78999999999999877 79999999999999999999999999999999 99999999
Q ss_pred EEeeeecCCcchh
Q 027035 184 HSSYYYDTEMEIC 196 (229)
Q Consensus 184 ~~~~vl~~~~~~~ 196 (229)
.+..||++||++|
T Consensus 157 ~HTiiLdDPFddp 169 (479)
T KOG0415|consen 157 KHTIILDDPFDDP 169 (479)
T ss_pred eeeEEecCCCCCc
Confidence 9999999999975
No 23
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-40 Score=283.59 Aligned_cols=163 Identities=22% Similarity=0.417 Sum_probs=148.3
Q ss_pred CCCcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCC-CCCCCCccccccccCccc
Q 027035 26 LGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTV 104 (229)
Q Consensus 26 ~~~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~~~~ 104 (229)
+.+.+|++.|+.|+|.||||+..||++|.||++||..|||+|+.|||++|+|++|||||.+ |.|. ...+|..+
T Consensus 10 ~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGg------esiyg~~f 83 (439)
T KOG0885|consen 10 PTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGG------ESIYGRPF 83 (439)
T ss_pred CccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCc------cccccccc
Confidence 3457999999999999999999999999999999999999999999999999999999997 3332 11257778
Q ss_pred cCC-cCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCCCCCCcce
Q 027035 105 VGE-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVT-KGDETLRKLEGLPTRKEGIFVMPTERI 181 (229)
Q Consensus 105 ~~e-~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi-~G~~vl~~I~~~~~~~~~~~~~P~~~i 181 (229)
.+| +++|++ ++|+|+||+ .+.+.|||||||||+++|||+++|++||+|+ +.+..+.+|..+.++.+. +|..+-
T Consensus 84 adE~h~Rlrf~rrGlvgman-a~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~---Rp~~p~ 159 (439)
T KOG0885|consen 84 ADEFHPRLRFNRRGLVGMAN-AGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADD---RPVDPP 159 (439)
T ss_pred hhhcCcceeeeccceeeecc-cCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhccccccccc---CCCCcc
Confidence 888 789999 999999999 5669999999999999999999999999999 588899999999999888 999999
Q ss_pred EEEEeeeecCCcchhHH
Q 027035 182 TIHSSYYYDTEMEICEK 198 (229)
Q Consensus 182 ~I~~~~vl~~~~~~~~~ 198 (229)
.|.+|.|+.+||+++..
T Consensus 160 kI~s~EV~~npFdDI~p 176 (439)
T KOG0885|consen 160 KIKSVEVLINPFDDIKP 176 (439)
T ss_pred ceeeeEeecCchhhcch
Confidence 99999999999999764
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=6.6e-39 Score=255.02 Aligned_cols=151 Identities=38% Similarity=0.604 Sum_probs=132.2
Q ss_pred EEEEEEe-CceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCCc
Q 027035 30 RVVFQTN-YGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEF 108 (229)
Q Consensus 30 ~v~~~T~-~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e~ 108 (229)
.|.|+|+ +|+|+||||++.||++|+||++||+.++|+++.|||++|++++|+|++....... ......+.++++|.
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~---~~~~~~~~~~~~E~ 77 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYG---REDSTGGEPIPDEF 77 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSST---SEEBTTBSCBSSSG
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcc---cccccCcccccccc
Confidence 4789997 9999999999999999999999999999999999999999999999988744310 00111344688885
Q ss_pred --CCCCCCccEEEEecCC-CCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEEEE
Q 027035 109 --SDVKHVRGILSMGRYS-DPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHS 185 (229)
Q Consensus 109 --~~l~h~~G~lsma~~~-~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~ 185 (229)
..+.|.+|+|+|++++ ++++++|||||++++.++||++|+|||+|++||++|++|++.++++ +|.++|+|.+
T Consensus 78 ~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-----~p~~~v~I~~ 152 (155)
T PF00160_consen 78 NPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-----RPKQDVTISS 152 (155)
T ss_dssp BTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-----EBSSTEEEEE
T ss_pred ccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-----ccCCCeEEEE
Confidence 5688899999999853 4888999999999999999999999999999999999999988866 7999999999
Q ss_pred eee
Q 027035 186 SYY 188 (229)
Q Consensus 186 ~~v 188 (229)
|+|
T Consensus 153 cgv 155 (155)
T PF00160_consen 153 CGV 155 (155)
T ss_dssp EEE
T ss_pred eEC
Confidence 997
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=9e-39 Score=251.95 Aligned_cols=144 Identities=35% Similarity=0.520 Sum_probs=128.0
Q ss_pred EEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCCc-CC
Q 027035 32 VFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEF-SD 110 (229)
Q Consensus 32 ~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e~-~~ 110 (229)
+++|+.|+|+|+||.+.+|++|+||++||+.++|+++.|||++|++++|+||+....... ...+..+++|. +.
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~------~~~~~~~~~E~~~~ 74 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG------SGPGYKFPDENFPL 74 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC------CcCCCccCCccccC
Confidence 378999999999999999999999999999999999999999999999999988744321 12466778884 44
Q ss_pred C-CCCccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceEEEE
Q 027035 111 V-KHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHS 185 (229)
Q Consensus 111 l-~h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~ 185 (229)
. .|++|+|+|++ .++++++|||||++++.++||++|+|||+|++||++|++|+..++++++ +|.++|+|.+
T Consensus 75 ~~~~~~G~v~~~~-~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~---~P~~~i~I~~ 146 (146)
T cd00317 75 KYHHRRGTLSMAN-AGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENG---RPIKPVTISD 146 (146)
T ss_pred cCcCCCcEEEEee-CCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCC---cCcCceEEeC
Confidence 4 34999999999 6678999999999999999999999999999999999999999999888 9999999974
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=251.65 Aligned_cols=155 Identities=26% Similarity=0.352 Sum_probs=139.1
Q ss_pred CCCcEEEEEEe-----CceEEEEEcCCCCchhHHHHHHhhcC--C-CcCCceEeEEecCCEEEeecCCCCCCCCCccccc
Q 027035 26 LGSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRL--G-CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQR 97 (229)
Q Consensus 26 ~~~~~v~~~T~-----~G~I~ieL~~d~aP~t~~nF~~l~~~--g-~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~ 97 (229)
+.+|.|.+... .|+|+++|..|..|+|++||..||.+ | .|+|++||||+|.|++||||++.++|... .
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtgg----k 209 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGG----K 209 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCC----c
Confidence 45777877764 79999999999999999999999974 3 59999999999999999999999776631 2
Q ss_pred cccCccccCCcCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCC
Q 027035 98 VEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVM 176 (229)
Q Consensus 98 ~~~~~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~ 176 (229)
..+|..+.+|+..|+| .+|+||||+ +++|+||||||||+....|||++|+|||.|++||+||++++++++..+ +
T Consensus 210 siygkkfddenf~lkht~pgtlsman-sgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksg----k 284 (298)
T KOG0111|consen 210 SIYGKKFDDENFTLKHTMPGTLSMAN-SGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSG----K 284 (298)
T ss_pred ccccccccccceeeecCCCceeeccc-cCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCC----C
Confidence 2357778889889999 999999999 899999999999999999999999999999999999999999999765 8
Q ss_pred CCcceEEEEeeee
Q 027035 177 PTERITIHSSYYY 189 (229)
Q Consensus 177 P~~~i~I~~~~vl 189 (229)
|...|.|..||.+
T Consensus 285 p~qkv~i~~cge~ 297 (298)
T KOG0111|consen 285 PQQKVKIVECGEI 297 (298)
T ss_pred cceEEEEEecccc
Confidence 9999999999976
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=7.3e-36 Score=242.17 Aligned_cols=133 Identities=36% Similarity=0.444 Sum_probs=106.1
Q ss_pred EEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCC-CC-----------CCcccccc---
Q 027035 34 QTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGR-SA-----------PMNEVQRV--- 98 (229)
Q Consensus 34 ~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~-~~-----------~~~~~~~~--- 98 (229)
.|++|+|+|+||++.||+||+||++||+.+||+++.||||+++|++||||+.... +. |.+.....
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 5899999999999999999999999999999999999999999999999987531 11 11000000
Q ss_pred -ccCccc-----cCCcC-CCCCCccEEEEecCCC-CCCCcccEEEEcC-------CCCCCCCCCcEEEEEEcCHHHHHHH
Q 027035 99 -EAEKTV-----VGEFS-DVKHVRGILSMGRYSD-PNSAASSFSILLG-------DAPHLDGQYAVFGKVTKGDETLRKL 163 (229)
Q Consensus 99 -~~~~~~-----~~e~~-~l~h~~G~lsma~~~~-~~~~~sqFfI~l~-------~~~~ld~~~~vFG~Vi~G~~vl~~I 163 (229)
..+..+ .++.+ .+.|.+|+||||+.+. |++++|||||+++ +.++||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 011111 23333 3445999999999655 5999999999998 7899999999999999999999999
Q ss_pred hcC
Q 027035 164 EGL 166 (229)
Q Consensus 164 ~~~ 166 (229)
+..
T Consensus 163 ~~g 165 (176)
T cd01924 163 KVG 165 (176)
T ss_pred cCC
Confidence 653
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-30 Score=205.11 Aligned_cols=153 Identities=27% Similarity=0.384 Sum_probs=132.8
Q ss_pred CcEEEEEEe-----CceEEEEEcCCCCchhHHHHHHhhcCC---CcCCceEeEE---ecCCEEEeecCCCCCCCCCcccc
Q 027035 28 SARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLG---CYNTNHFFRV---DKGFVAQVADVVGGRSAPMNEVQ 96 (229)
Q Consensus 28 ~~~v~~~T~-----~G~I~ieL~~d~aP~t~~nF~~l~~~g---~Y~g~~f~ri---~~~~~iq~Gd~~~~~~~~~~~~~ 96 (229)
+++|.|+.+ .|++.++||.|..|+|++||..||++. .|++++|||+ .+++++||||...+++....
T Consensus 3 ~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggk--- 79 (167)
T KOG0865|consen 3 NPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGK--- 79 (167)
T ss_pred CCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccce---
Confidence 567888854 899999999999999999999999732 5999999993 34799999999887764211
Q ss_pred ccccCccccCCcCCCCC-CccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCC
Q 027035 97 RVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFV 175 (229)
Q Consensus 97 ~~~~~~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~ 175 (229)
..++..+++|+..++| .+|+||||+ .+|++++|||||++...+|||++|+|||+|.+||+++++|+...+.++
T Consensus 80 -Siy~ekF~DenFilkhtgpGiLSmaN-agpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g---- 153 (167)
T KOG0865|consen 80 -SIYGEKFDDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG---- 153 (167)
T ss_pred -EecccccCCcCcEEecCCCCeeehhh-cCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC----
Confidence 1146667888889999 899999999 789999999999999999999999999999999999999999887665
Q ss_pred CCCcceEEEEeeee
Q 027035 176 MPTERITIHSSYYY 189 (229)
Q Consensus 176 ~P~~~i~I~~~~vl 189 (229)
+|.++|.|.+|+.+
T Consensus 154 k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 KTSKKITIADCGQL 167 (167)
T ss_pred cccccEEEecCCcC
Confidence 89999999999864
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.4e-06 Score=78.71 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=125.3
Q ss_pred EEEEEEeCc----eEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCCCCCCcccccccc-Cccc
Q 027035 30 RVVFQTNYG----DIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEA-EKTV 104 (229)
Q Consensus 30 ~v~~~T~~G----~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~-~~~~ 104 (229)
.+.+.|+.| .|.|+++.+-.|.-++-|...|..+|+++..|.+|...+++|.||...........+.+... ...+
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 456667889 79999999999999999999999999999999999999999999876533322222333212 2223
Q ss_pred cCC--cCCCCCCccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCCCCcceE
Q 027035 105 VGE--FSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERIT 182 (229)
Q Consensus 105 ~~e--~~~l~h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~~~~P~~~i~ 182 (229)
++. +..++|..-++.+.. ......+-+|++.-...+.+..+..|||++..|-++++.|....++... .|..++.
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~---q~ks~y~ 255 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQY---QPKSPYG 255 (558)
T ss_pred ccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhh---ccccccc
Confidence 332 567899888888887 4445556789999888899999999999999999999999999999888 8999888
Q ss_pred EEEeeee
Q 027035 183 IHSSYYY 189 (229)
Q Consensus 183 I~~~~vl 189 (229)
|.++...
T Consensus 256 l~~Velg 262 (558)
T KOG0882|consen 256 LMHVELG 262 (558)
T ss_pred cceeehh
Confidence 8888655
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.94 E-value=0.0092 Score=55.15 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=65.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhhcCCCc--CCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCCcCCCCCC
Q 027035 37 YGDIEFGFYPSVAPQTVDHIFKLVRLGCY--NTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHV 114 (229)
Q Consensus 37 ~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y--~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e~~~l~h~ 114 (229)
.--|.|+||.+.||+++..|.+..--... =-..+|-..++..+--|+... ...-+|++.|.-+-.
T Consensus 374 ~~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~~~~-------------~k~LiPEN~P~~~V~ 440 (503)
T TIGR03268 374 DKVIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGNKEL-------------AKGLIPENTPEDKVE 440 (503)
T ss_pred HhEEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccCchh-------------ccccCCCCCCCCccc
Confidence 44599999999999999999988632111 112344444554333222211 122233334444447
Q ss_pred ccEEEEecCCCCCCCcccEEEEcCCCCCCC------CCCcEEEEEEcCHHHHHHHhcC
Q 027035 115 RGILSMGRYSDPNSAASSFSILLGDAPHLD------GQYAVFGKVTKGDETLRKLEGL 166 (229)
Q Consensus 115 ~G~lsma~~~~~~~~~sqFfI~l~~~~~ld------~~~~vFG~Vi~G~~vl~~I~~~ 166 (229)
+|.|++.|....+. .-.=|-+.++..+. ..--++|+|+++++.|.++...
T Consensus 441 ag~IgvTN~a~k~~--G~IGVRl~d~defGPTGE~F~gTNIiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 441 AGVIGVTNQACKHV--GMIGVRLEDSDEFGPTGEPFSGTNIIGRVVEGMERLKGLKEG 496 (503)
T ss_pred cceEeeechhhhcC--ceEEEEccCCcccCCCCCCccCcceEEEecCChhHhcccccC
Confidence 88888877543221 12334444443322 2345889999999998887653
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.58 E-value=0.023 Score=52.75 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=65.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhhcCCCc--CCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCCcCCCCCC
Q 027035 37 YGDIEFGFYPSVAPQTVDHIFKLVRLGCY--NTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHV 114 (229)
Q Consensus 37 ~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y--~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e~~~l~h~ 114 (229)
.--|.|+||.+.||+|+..|.++..-... =-..+|-..++.++--|+... ...-+|++.+.-+-.
T Consensus 377 ~~vi~IeLydd~AP~s~~yFR~~tGL~~~~VG~L~v~F~~~d~~lFk~~~~~-------------~k~liPEN~P~~~V~ 443 (508)
T PRK00969 377 DKLIEIELYDDKAPRTVWYFRKVTGLKTKPVGKLPVYFKYEDTYLFKGNIEY-------------AKGLLPENTPEDKVK 443 (508)
T ss_pred HHEEEEEEcCcCCchHHHHHHHhcCCcccccceeEEEEEeCCeEEEccChhh-------------ccccCCCCCCCCccc
Confidence 34599999999999999999998632211 112344445554443222221 122234434444457
Q ss_pred ccEEEEecCCCCCCCcccEEEEcCCCCCCC------CCCcEEEEEEcCHHHHHHHhcC
Q 027035 115 RGILSMGRYSDPNSAASSFSILLGDAPHLD------GQYAVFGKVTKGDETLRKLEGL 166 (229)
Q Consensus 115 ~G~lsma~~~~~~~~~sqFfI~l~~~~~ld------~~~~vFG~Vi~G~~vl~~I~~~ 166 (229)
+|.|++.|....+. .-.=|-+.++..+. ..--++|+|+ +++-|.++...
T Consensus 444 ag~IgvTN~a~k~~--G~iGVR~~d~d~fGPTGE~F~gTNIIGrVv-~~e~Lk~lKeG 498 (508)
T PRK00969 444 AGEIGVTNMAAKYK--GMIGVRLSDNDEFGPTGEPFEGTNIIGRVV-NLEKLKKLKEG 498 (508)
T ss_pred cceEeeechhhhcC--ceEEEEccCCcccCCCCCCccCceeEEEec-ChHHhcccccC
Confidence 88888877542221 12334444443322 2356999999 99998887653
No 32
>PRK00969 hypothetical protein; Provisional
Probab=96.04 E-value=0.07 Score=49.59 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=71.8
Q ss_pred CcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCC
Q 027035 28 SARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE 107 (229)
Q Consensus 28 ~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e 107 (229)
.....+.|++|.|+|||. .....+..++..++. |.|...+=-.++- +-.|-+.. .+..+
T Consensus 50 ~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~-vAfGp~~s----------------~l~p~ 108 (508)
T PRK00969 50 TKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSA-VAFGPFES----------------DLEPS 108 (508)
T ss_pred cceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccc-eeEccccc----------------Ccccc
Confidence 457889999999999999 355566666665543 3444433332222 22222211 11111
Q ss_pred cCCCCCCccEEEEecCCCCCCCcccEEEEcCCCCCCCCC--CcEEEEEEcCHHHHHHHhcCCC
Q 027035 108 FSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQ--YAVFGKVTKGDETLRKLEGLPT 168 (229)
Q Consensus 108 ~~~l~h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~--~~vFG~Vi~G~~vl~~I~~~~~ 168 (229)
.....+.++-|.+.- ++-+...+.+.|+..+....-|- --+||+|+.|..+|+++.....
T Consensus 109 ~~~~~y~r~DV~lg~-~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~D~ 170 (508)
T PRK00969 109 REEYEYERWDVVLSL-SGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDGDR 170 (508)
T ss_pred cCcceeecccEEEEc-cCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCCCe
Confidence 112233788888877 55565666777776555322221 2799999999999999987543
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.04 Score=49.62 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhhcCC--CcCCceEeEEecC--CEEEeecCCCCCCCCCccccccccCccccCC-cCCCCC
Q 027035 39 DIEFGFYPSVAPQTVDHIFKLVRLG--CYNTNHFFRVDKG--FVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-FSDVKH 113 (229)
Q Consensus 39 ~I~ieL~~d~aP~t~~nF~~l~~~g--~Y~g~~f~ri~~~--~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e-~~~l~h 113 (229)
-|.||||.+.||+++..|.+...-- ---....|-..++ .++.-|+... +..+..| .+.-+-
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~kpVGkL~Vhfay~d~~~vmfegn~~~--------------~K~llPEN~P~d~V 442 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTKPVGKLKVHFAYDDTYLVMFEGNAVL--------------AKGLLPENTPADTV 442 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcccccccccceEEEEEeCCceEEEEcCChHH--------------hccCCCCCCchhhe
Confidence 3999999999999999999886421 1112334444444 1222222221 1222222 222222
Q ss_pred CccEEEEecCCCCCCCcccEEEEcCCCCCCC------CCCcEEEEEEcCHHHHHHHhc
Q 027035 114 VRGILSMGRYSDPNSAASSFSILLGDAPHLD------GQYAVFGKVTKGDETLRKLEG 165 (229)
Q Consensus 114 ~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld------~~~~vFG~Vi~G~~vl~~I~~ 165 (229)
.+|.|+..|...+.. .-.-+-|.++..+. .+-.++|+|++|.+-|..|..
T Consensus 443 e~g~iGvTN~a~r~~--GmIGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 443 EAGEIGVTNQAARHM--GMIGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred ecccccccccchhcc--ceeEEEeccccccCCCCCccccceeehhhccChHHhccccc
Confidence 444444333221110 01122233332221 235699999999999888876
No 34
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.62 E-value=0.15 Score=47.43 Aligned_cols=118 Identities=7% Similarity=0.040 Sum_probs=71.1
Q ss_pred CcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCC
Q 027035 28 SARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE 107 (229)
Q Consensus 28 ~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e 107 (229)
.....+.|+.|+|+|+|-. ...+++-|+..++. |.|...+=-.++- +-.|-+.. .+...
T Consensus 46 ~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~~-vAfGp~~s----------------dl~p~ 104 (503)
T TIGR03268 46 TKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQE-VAFGPFPS----------------DLEPS 104 (503)
T ss_pred cceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchhh-eeeCcccC----------------Ccccc
Confidence 4578899999999999994 55667677665543 2333333222221 11221111 11111
Q ss_pred cCCCCCCccEEEEecCCCCCCCcccEEEEcCCCCCCC---CCCcEEEEEEcCHHHHHHHhcCC
Q 027035 108 FSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD---GQYAVFGKVTKGDETLRKLEGLP 167 (229)
Q Consensus 108 ~~~l~h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld---~~~~vFG~Vi~G~~vl~~I~~~~ 167 (229)
.....+.++.|.+.- ++-+...+.+.|+..+....- ...-+||+|+.|..+|+++....
T Consensus 105 ~~~~~y~r~DV~lg~-~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~D 166 (503)
T TIGR03268 105 REPSEYERWDVILSL-SGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDGD 166 (503)
T ss_pred CCcceeecccEEEEc-cCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCCC
Confidence 112233788888877 555666677777776554222 14579999999999999997754
No 35
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=95.48 E-value=0.066 Score=42.07 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhhcCCCcCCceEeEEecC--CEEEeecCCCCCCCCCccccccccCccccCCcCCCCCC
Q 027035 37 YGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKG--FVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHV 114 (229)
Q Consensus 37 ~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y~g~~f~ri~~~--~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e~~~l~h~ 114 (229)
.-.++.+|..|.||+||+.|.+.. -|.+..+|-..-+ .++.-++... ...+.|+......
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~~~~---------------~~~~~EN~T~~P~ 68 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPDFDP---------------FEPGRENHTVTPI 68 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--SS---------------S---S-SEESS--
T ss_pred CeEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCCcCc---------------CCCCCCcCcccCC
Confidence 346889999999999999999987 2333333332222 2333333220 1112233333335
Q ss_pred ccEEEEe--cC----CCCC-CCcccEEEEcCCCCCC-C-C--CCcEEEEEEcCHHHHHHHhc
Q 027035 115 RGILSMG--RY----SDPN-SAASSFSILLGDAPHL-D-G--QYAVFGKVTKGDETLRKLEG 165 (229)
Q Consensus 115 ~G~lsma--~~----~~~~-~~~sqFfI~l~~~~~l-d-~--~~~vFG~Vi~G~~vl~~I~~ 165 (229)
+|-|.+- .. +.|. -+...+|+-.+..-.- | | --.+|++|++|+|-+.++.+
T Consensus 69 pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 69 PGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR 130 (147)
T ss_dssp TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred CCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence 6766655 10 1111 1222344333322111 1 1 13699999999998877754
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.032 Score=50.20 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=62.1
Q ss_pred EEEEEcCCCCchhHHHHHHhhcCCCc----CCceEeEEecCCEEEeecCCCCCCCCCccccccccCccccCCcCCCCCCc
Q 027035 40 IEFGFYPSVAPQTVDHIFKLVRLGCY----NTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHVR 115 (229)
Q Consensus 40 I~ieL~~d~aP~t~~nF~~l~~~g~Y----~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~e~~~l~h~~ 115 (229)
+.++|.++ +|+++++|+++...|.+ .-.+|.-..+ + .+..++.|+.. ...+
T Consensus 205 ~eve~s~n-sP~saEH~lalmedG~lri~~~tntfis~~~---l--------------------q~~~~~~en~d-~Rer 259 (512)
T COG4070 205 FEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTFISDDT---L--------------------QEEKVPEENFD-LRER 259 (512)
T ss_pred EEEEeCCC-CchhHHHHHHHhhcceEEEEEeccceeeccc---c--------------------ccccCChhhhh-hhhc
Confidence 77888776 99999999999988742 2222211100 1 23334444322 2379
Q ss_pred cEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcC
Q 027035 116 GILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGL 166 (229)
Q Consensus 116 G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~ 166 (229)
|.|+..+.+ -+ ...-||.-.+-+.- -.|.+.|+|++||++++--...
T Consensus 260 G~iTvRn~G-vg--eGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~eG 306 (512)
T COG4070 260 GAITVRNVG-VG--EGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEEG 306 (512)
T ss_pred ceEEEEeee-cc--cceEEEEecCCCCc-cccceeeeeecceEEEEecccC
Confidence 999998843 22 23678887555422 3599999999999998755443
No 37
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=93.00 E-value=0.099 Score=39.28 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEeC
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTNY 37 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~T~~ 37 (229)
|++++++++.+++|.+|.+....+....-.|+|+|+.
T Consensus 1 Mrk~~~~~l~~~lLvGCsS~~~i~~~~~q~vvm~~s~ 37 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSSHQEILVNDEQSVVMETSV 37 (123)
T ss_pred CceehHHHHHHHHhhccCCCCCccccccceeeecccc
Confidence 8999999999999999999888887777789999974
No 38
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=88.80 E-value=4.6 Score=30.52 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=55.7
Q ss_pred EEEEEEeCceEEEEEcCCCCchhHHHHHHhhc----CCCcCCceEeEEecCCEEEeecCCCCCCCCCccccccccCcccc
Q 027035 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVR----LGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVV 105 (229)
Q Consensus 30 ~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~----~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
++.++.....+.++|+.. .|++.|.+..= -..| |..++--.| ..++
T Consensus 2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~-g~E~y~~~p--------------------------~~l~ 51 (120)
T PF04126_consen 2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDW-GNEKYFSLP--------------------------LKLP 51 (120)
T ss_dssp EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEEC-TTEEEEE-S------------------------------
T ss_pred eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHC-CceEEEeCC--------------------------CCCC
Confidence 567777788899999998 78999988761 1122 122221111 1111
Q ss_pred -CCcCCCCCCccEEEEecCCCCCCCcccEEEEcCCCC-------CCCCCCcEEEEEEcCHHHHHHHhc
Q 027035 106 -GEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAP-------HLDGQYAVFGKVTKGDETLRKLEG 165 (229)
Q Consensus 106 -~e~~~l~h~~G~lsma~~~~~~~~~sqFfI~l~~~~-------~ld~~~~vFG~Vi~G~~vl~~I~~ 165 (229)
++...-....|.|+.-..++ -|.|-+++.| .+-....++|||++|.+.+.++..
T Consensus 52 ~~~~~~~~~~~GDi~Yw~pg~------~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 52 TEENPRSSVEAGDIAYWPPGG------ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp -SSSEESSB-TTEEEEECCCT------EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cccCccccccCceEEEeCCCC------EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 11222223788888765221 4788887775 344568899999999998877754
No 39
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=85.02 E-value=0.79 Score=24.92 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027035 1 MLNVIRIFLTLITLIGTA 18 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (229)
|||+.+.++.++.|.+|+
T Consensus 7 mKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 488888888888877776
No 40
>PRK11627 hypothetical protein; Provisional
Probab=70.50 E-value=7.9 Score=31.87 Aligned_cols=22 Identities=18% Similarity=0.381 Sum_probs=16.0
Q ss_pred ChhHHHHHHHHHHHHhccCCCC
Q 027035 1 MLNVIRIFLTLITLIGTASSQE 22 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (229)
|||+++.++.+++|.+|++++.
T Consensus 2 lkklll~l~a~~~L~gCA~~p~ 23 (192)
T PRK11627 2 LKKILFPLVALFMLAGCATPSN 23 (192)
T ss_pred hHHHHHHHHHHHHHHhhcCCCC
Confidence 5788777776777888887743
No 41
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=69.36 E-value=16 Score=30.01 Aligned_cols=70 Identities=9% Similarity=0.110 Sum_probs=36.0
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEe-CceE-EEEEcCCCCchhHHHHHHhh------cCCCcCCceEeE
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTN-YGDI-EFGFYPSVAPQTVDHIFKLV------RLGCYNTNHFFR 72 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~T~-~G~I-~ieL~~d~aP~t~~nF~~l~------~~g~Y~g~~f~r 72 (229)
||++...++++++.+++ ++..+..+..+..+... .|.+ ++|.|.-.|| +|.+|.... +..+=++..|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~--~~~~~~~G~~Y~~~~~p~~~~~~VvEffdy~Cp-hC~~~~~~l~~~~~~~~~~~~~v~~~~ 77 (207)
T PRK10954 1 MKKIWLALAGMVLAFSA--SAAQFTDGKQYTTLDKPVAGEPQVLEFFSFYCP-HCYQFEEVYHVSDNVKKKLPEGTKMTK 77 (207)
T ss_pred CchHHHHHHHHHHHhhc--chhhccCCceeEEecCcCCCCCeEEEEeCCCCc-cHHHhcccccchHHHHHhCCCCCeEEE
Confidence 66664433222222332 33344445445454433 2443 6888888898 788887532 233324556665
Q ss_pred E
Q 027035 73 V 73 (229)
Q Consensus 73 i 73 (229)
+
T Consensus 78 ~ 78 (207)
T PRK10954 78 Y 78 (207)
T ss_pred e
Confidence 5
No 42
>PRK10449 heat-inducible protein; Provisional
Probab=59.50 E-value=9.2 Score=29.64 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027035 1 MLNVIRIFLTLITLIGTASSQ 21 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (229)
||+++.+++++++|.+|++..
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~ 21 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSG 21 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCC
Confidence 899998877788788777654
No 43
>PRK11372 lysozyme inhibitor; Provisional
Probab=58.23 E-value=35 Score=25.39 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=21.1
Q ss_pred ChhHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEEeCceEEEEEcC
Q 027035 1 MLNVIRIFLTLITLIGTASSQE-DPQLGSARVVFQTNYGDIEFGFYP 46 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~v~~~T~~G~I~ieL~~ 46 (229)
||+++ +++++++|.+|++... .+......+..+=....+.+..++
T Consensus 3 mk~ll-~~~~~~lL~gCs~~~~~~~~~~~~~~~Y~C~~~~~~v~~~~ 48 (109)
T PRK11372 3 MKKLL-IICLPVLLTGCSAYNQFVERMQTDTLEYQCDEKPLTVKLNN 48 (109)
T ss_pred hHHHH-HHHHHHHHHHhcCCccccCCCCCCcEEEEeCCcEEEEEEEC
Confidence 67755 3333444566665432 111222233444344667666654
No 44
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=56.35 E-value=18 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=7.9
Q ss_pred ChhHHHHHHHHHHH
Q 027035 1 MLNVIRIFLTLITL 14 (229)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (229)
||.+...|+++++.
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 78776644444333
No 45
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=55.65 E-value=26 Score=27.38 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=11.1
Q ss_pred EEEEEcCCCCchhH--HHHHHhhc
Q 027035 40 IEFGFYPSVAPQTV--DHIFKLVR 61 (229)
Q Consensus 40 I~ieL~~d~aP~t~--~nF~~l~~ 61 (229)
|++.+|.=..+..- .-|.+|..
T Consensus 49 vvvrvyqL~d~~~F~~adf~~L~~ 72 (146)
T TIGR03352 49 VVVRVYELKSDTKFEAADFFALTE 72 (146)
T ss_pred eEEEEEEECCccccccCCHHHHHh
Confidence 77777763333332 23455553
No 46
>PRK13792 lysozyme inhibitor; Provisional
Probab=53.25 E-value=33 Score=26.36 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=10.3
Q ss_pred ChhHHHHHHH-HHH-HHhccCCCCC
Q 027035 1 MLNVIRIFLT-LIT-LIGTASSQED 23 (229)
Q Consensus 1 ~~~~~~~~~~-~~~-~~~~~~~~~~ 23 (229)
||+..+++++ +.+ |.+|+.++..
T Consensus 1 mk~~l~~ll~~~~~lLsaCs~~~~~ 25 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACGGSDDD 25 (127)
T ss_pred ChhHHHHHHHHHHhheecccCCCCC
Confidence 7755443333 333 3444444333
No 47
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=52.27 E-value=15 Score=30.53 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCC
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDP 24 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p 24 (229)
||++++++ +++++.+|+.....+
T Consensus 1 mk~i~~l~-l~lll~~C~~~~~~~ 23 (216)
T PF11153_consen 1 MKKILLLL-LLLLLTGCSTNPNEP 23 (216)
T ss_pred ChHHHHHH-HHHHHHhhcCCCccC
Confidence 78876666 555677777665553
No 48
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=51.83 E-value=12 Score=24.34 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=11.1
Q ss_pred ChhHHHHHHHHHHHH
Q 027035 1 MLNVIRIFLTLITLI 15 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (229)
||++|+.++++.+++
T Consensus 1 mk~~~~s~~ala~l~ 15 (58)
T COG5567 1 MKNVFKSLLALATLF 15 (58)
T ss_pred ChhHHHHHHHHHHHH
Confidence 899998877755554
No 49
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=51.74 E-value=15 Score=29.79 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027035 1 MLNVIRIFLTLITLIGTASSQ 21 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (229)
||.++.++++++++++|+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~c~~~~ 21 (177)
T TIGR03516 1 MKHLIAVILLLLLLLGCKTPE 21 (177)
T ss_pred CceeHHHHHHHHHHhhcCCCC
Confidence 888888888888889998553
No 50
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=50.75 E-value=12 Score=27.31 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 027035 1 MLNVIRIFLTLITLIGTASS 20 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (229)
||++.++..+.++|-+|+++
T Consensus 1 mKk~ll~~~lallLtgCatq 20 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQ 20 (97)
T ss_pred CcHHHHHHHHHHHHccccee
Confidence 89988888777766666655
No 51
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=48.43 E-value=27 Score=22.41 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHH---HHHhccCCCC
Q 027035 1 MLNVIRIFLTLI---TLIGTASSQE 22 (229)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~ 22 (229)
|.+.+.+.++++ -|++|.+++.
T Consensus 1 mlk~lkf~lv~imlaqllsctpsap 25 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTPSAP 25 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCCCC
Confidence 566666655544 4578887755
No 52
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=47.09 E-value=21 Score=29.96 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEeCce-EEEEEcCCCCch--hHHHHHH-----hhcCCCc
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTNYGD-IEFGFYPSVAPQ--TVDHIFK-----LVRLGCY 65 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~T~~G~-I~ieL~~d~aP~--t~~nF~~-----l~~~g~Y 65 (229)
||+++..++.+++|.+|+.+...+ ..+=.|..++=+ |.|--.-..+|. +.+.|+. |++.|||
T Consensus 1 mk~l~~~l~~~l~LsgCa~~~~~~---~dy~a~~~~kPrSILVlPp~N~S~dV~A~~~~ls~~~~PLAe~GYY 70 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGCATTKPPP---YDYTAFKESKPRSILVLPPVNESPDVKAAYYVLSTVTYPLAEKGYY 70 (215)
T ss_pred ChhHHHHHHHHHHHhhccCCCCcc---ccHHHHhcCCCceEEEeCCCCCCcccchHHHHHHHHHHHHHhCCce
Confidence 999998888877777777553322 122233433322 444444444552 2233433 4456665
No 53
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=46.31 E-value=29 Score=30.05 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=4.3
Q ss_pred EEEEEeCceE
Q 027035 31 VVFQTNYGDI 40 (229)
Q Consensus 31 v~~~T~~G~I 40 (229)
.+++-..|.+
T Consensus 34 ~tVkde~Gt~ 43 (310)
T COG4594 34 HTVKDELGTF 43 (310)
T ss_pred eeeeccCCce
Confidence 3344444443
No 54
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=46.26 E-value=8.5 Score=23.82 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=11.1
Q ss_pred ChhHHHHHHHHHH-HHhccCC
Q 027035 1 MLNVIRIFLTLIT-LIGTASS 20 (229)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~ 20 (229)
||+++.++++++. ++++|+.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 7766655555444 4555554
No 55
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=46.08 E-value=23 Score=29.85 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027035 1 MLNVIRIFLTLITLIGTAS 19 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (229)
||+++.+++++++|.+|++
T Consensus 1 mk~~~~~~~~~l~l~gCa~ 19 (221)
T PRK12407 1 MKRFLILTALLLALCGCES 19 (221)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 8888777777777777765
No 56
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=45.30 E-value=16 Score=24.44 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=16.7
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027035 1 MLNVIRIFLTLITLIGTASSQ 21 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (229)
||++-.+|+++++++..+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWAA 21 (92)
T ss_pred ChhHHHHHHHHHHhcchhhhc
Confidence 899988888888887776663
No 57
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=45.16 E-value=46 Score=29.21 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCC-------------CcEEEEEEeCceEEEEEcC
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLG-------------SARVVFQTNYGDIEFGFYP 46 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-------------~~~v~~~T~~G~I~ieL~~ 46 (229)
|++++..+++++++.+.+.+...|..+ +..+.+.|..|..+.-.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~a~A~~~p~~~~~D~RIr~v~Y~p~~V~~V~~~~G~~T~I~f~ 60 (292)
T PRK13861 2 IKKLFLTLACLLFAAIGALAEDTPAAGKLDPRMRYLAYNPDQVVRLSTAVGATLVVTFG 60 (292)
T ss_pred hhHHHHHHHHHHHhccchhHhhcCCCCCCCCceEEEEeCCCCEEEEEEECCcEEEEEEC
Confidence 567666666555444333333333322 3456677888886544444
No 58
>PRK09810 entericidin A; Provisional
Probab=45.14 E-value=21 Score=21.77 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027035 1 MLNVIRIFLTLITLIGTA 18 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (229)
||+++.+++++++.+++|
T Consensus 2 Mkk~~~l~~~~~~~L~aC 19 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGC 19 (41)
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 777766665544444433
No 59
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=44.77 E-value=55 Score=29.67 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=17.2
Q ss_pred EEEEEEeCceEEEEEcCCCCchh
Q 027035 30 RVVFQTNYGDIEFGFYPSVAPQT 52 (229)
Q Consensus 30 ~v~~~T~~G~I~ieL~~d~aP~t 52 (229)
+..++-..|.|+||.-....|+.
T Consensus 75 r~~vdF~~g~i~vet~~~~~p~~ 97 (359)
T PRK11671 75 RSHINFDDGTITIETIAGTNPAA 97 (359)
T ss_pred eeeEecCCCeEEEEecCCcChHH
Confidence 44566679999999987777743
No 60
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=44.17 E-value=24 Score=28.81 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=12.4
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027035 1 MLNVIRIFLTLITLIGTA 18 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (229)
||+.++++++++++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (189)
T PF12099_consen 1 MKKIRILFLLLLLFCSLS 18 (189)
T ss_pred CceehHHHHHHHHHHHhc
Confidence 888887777666555444
No 61
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=43.10 E-value=73 Score=24.42 Aligned_cols=48 Identities=10% Similarity=0.318 Sum_probs=35.6
Q ss_pred cEEEEEEeCceEEEEEcCCCCc---------hhHHHHHHhhcCC-CcCCceEeEEecC
Q 027035 29 ARVVFQTNYGDIEFGFYPSVAP---------QTVDHIFKLVRLG-CYNTNHFFRVDKG 76 (229)
Q Consensus 29 ~~v~~~T~~G~I~ieL~~d~aP---------~t~~nF~~l~~~g-~Y~g~~f~ri~~~ 76 (229)
..+.++|..|++.+..-.+.++ ++++.|++..+.- .-+.+.|+-++++
T Consensus 4 vNIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 4 VNIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred eEEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 3688999999988887755433 3678999887542 2477889988876
No 62
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=42.54 E-value=46 Score=27.96 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCC--CCcEEEEEE-------------eCceEEEEEcCCCCch
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQL--GSARVVFQT-------------NYGDIEFGFYPSVAPQ 51 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~T-------------~~G~I~ieL~~d~aP~ 51 (229)
||+++.++++++.+++.......-.. ....+.++. +.+.+.|..|..+||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~ 66 (224)
T PTZ00443 1 MKFIILACCILFGLIADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSH 66 (224)
T ss_pred CchhHHHHHHHHHHHccccccccccccCCCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChH
Confidence 78876666666655554444331111 122333332 1367999999999995
No 63
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=42.27 E-value=58 Score=21.52 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHhcc
Q 027035 3 NVIRIFLTLITLIGTA 18 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (229)
.++.++++.+++.+|+
T Consensus 2 ~l~~~~~~~~~l~gCt 17 (59)
T PF13617_consen 2 PLLLLLALALALTGCT 17 (59)
T ss_pred hhHHHHHHHHHHccCC
Confidence 4455555555556665
No 64
>PRK10756 hypothetical protein; Provisional
Probab=37.82 E-value=73 Score=25.33 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=16.7
Q ss_pred eCceEEEEEcCCCCchhHHHHHHhhcCCCc
Q 027035 36 NYGDIEFGFYPSVAPQTVDHIFKLVRLGCY 65 (229)
Q Consensus 36 ~~G~I~ieL~~d~aP~t~~nF~~l~~~g~Y 65 (229)
+.-+|+||-|.|=-=..|--++..++.|.-
T Consensus 36 ~d~kI~VeA~dDP~V~GVTCyvS~a~~ggi 65 (157)
T PRK10756 36 PDHKIVVEAFDDPDVKNVTCYVSRAKTGGI 65 (157)
T ss_pred CCCEEEEEEecCCCCCcEEEEEeeeccCCc
Confidence 344599999997433333334444444433
No 65
>PHA03001 putative virion core protein; Provisional
Probab=37.65 E-value=75 Score=24.40 Aligned_cols=48 Identities=15% Similarity=0.372 Sum_probs=34.6
Q ss_pred cEEEEEEeCceEEEEEcC--CCCc------hhHHHHHHhhcCC-CcCCceEeEEecC
Q 027035 29 ARVVFQTNYGDIEFGFYP--SVAP------QTVDHIFKLVRLG-CYNTNHFFRVDKG 76 (229)
Q Consensus 29 ~~v~~~T~~G~I~ieL~~--d~aP------~t~~nF~~l~~~g-~Y~g~~f~ri~~~ 76 (229)
..+.++|..|++.+..-. ..+| +++++|++..+.- .-+.+.|+-++++
T Consensus 4 vNIfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 4 VNIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred eEEEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 368899999998777644 3344 4678998887542 2477889988876
No 66
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=35.16 E-value=38 Score=31.28 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 027035 1 MLNVIRIFLTLITLIGTASS 20 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (229)
||++|+.|++|.++++|-..
T Consensus 1 ~~~~~~~~~~l~l~~~~~~~ 20 (421)
T PRK09723 1 MKKFFRYFLFLALCLSCYTA 20 (421)
T ss_pred ChhHHHHHHHHHHHHhhhhh
Confidence 88899998888888777444
No 67
>PRK09929 hypothetical protein; Provisional
Probab=33.97 E-value=53 Score=23.67 Aligned_cols=70 Identities=7% Similarity=0.020 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCc---EEEEEEeCceEEEEEcCCCCchhHHHHHH-hhcCCCcCCceEeEEec
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLGSA---RVVFQTNYGDIEFGFYPSVAPQTVDHIFK-LVRLGCYNTNHFFRVDK 75 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~v~~~T~~G~I~ieL~~d~aP~t~~nF~~-l~~~g~Y~g~~f~ri~~ 75 (229)
||++-.+++..++++++.+.++.+..... ...--...|.|.+. +.-+|..++.=++ -+.. .|...|||+.
T Consensus 1 ~~~~~~~~~~al~~lS~~A~AA~~i~~~qa~~~~~~l~kiGtVSvs--~~~s~~d~~~~La~KAd~---~GA~yY~Ii~ 74 (91)
T PRK09929 1 MKIISKMLLGALAFAVTNVYAAELMTKAEFEKVESQYEKIGTISTS--NEMSTADAKEDLIKKADE---KGADVLVLTS 74 (91)
T ss_pred ChhHHHHHHHHHHHhchhhhhhhhhCHHHhhhhhcccceeEEEEEc--CCCCHHHHHHHHHHHHHH---cCCCEEEEEe
Confidence 78888888887777777766654432211 02223567888875 4457876654332 2222 4566777753
No 68
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=33.12 E-value=1.6e+02 Score=27.88 Aligned_cols=33 Identities=3% Similarity=0.082 Sum_probs=16.5
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEE
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVF 33 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~ 33 (229)
|||+..+.+|+++..+.+++++.+......+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 33 (499)
T PRK15346 1 MKKLLILIFLFLLNTAKFAASKSIPWQGNPFFI 33 (499)
T ss_pred CchhHHHHHHHHHhhhhhhccCCCCCCCCCEEE
Confidence 565544444444444555555555454343333
No 69
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=32.99 E-value=55 Score=27.48 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEeCceEEEEEcCC-CCchhHH
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTNYGDIEFGFYPS-VAPQTVD 54 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~T~~G~I~ieL~~d-~aP~t~~ 54 (229)
|++++..-++.+++.+.+++++.-.....+|.+.-+.....+.|.+. ..|-.++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~a~i~l~~TRvi~~~~~~~~sl~l~N~~~~p~lvQ 55 (227)
T PRK15299 1 MNSLAKAGLLCCLLCGSLAHAAGINIGTTRVIFHGDAKDASISISNSDNVPYLIQ 55 (227)
T ss_pred CcchhHHHHHHHHHhhhhhheeeEEECceEEEEeCCCcEEEEEEEeCCCCcEEEE
Confidence 67777773443333222223333333445677776666666666663 2354444
No 70
>PRK11443 lipoprotein; Provisional
Probab=32.00 E-value=47 Score=25.32 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=10.5
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027035 1 MLNVIRIFLTLITLIGTASSQ 21 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (229)
||+++.+++ +++|.+|++.+
T Consensus 1 Mk~~~~~~~-~~lLsgCa~~~ 20 (124)
T PRK11443 1 MKKFIAPLL-ALLLSGCQIDP 20 (124)
T ss_pred ChHHHHHHH-HHHHHhccCCC
Confidence 775544433 33456666543
No 71
>PRK02710 plastocyanin; Provisional
Probab=31.94 E-value=87 Score=23.28 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.8
Q ss_pred cEEEEEEeCce
Q 027035 29 ARVVFQTNYGD 39 (229)
Q Consensus 29 ~~v~~~T~~G~ 39 (229)
-.|.+.++-|.
T Consensus 31 ~~V~~~~~~~~ 41 (119)
T PRK02710 31 VEVKMGSDAGM 41 (119)
T ss_pred EEEEEccCCCe
Confidence 34555444333
No 72
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=31.38 E-value=65 Score=21.58 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=21.3
Q ss_pred CCCCCcEEEEEEcCHHHHHHHhcCCCCCCC
Q 027035 143 LDGQYAVFGKVTKGDETLRKLEGLPTRKEG 172 (229)
Q Consensus 143 ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~ 172 (229)
+|..-.++|+|++| -+.+|....+++++
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G 43 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDG 43 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCC
Confidence 44556799999999 56777777777765
No 73
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=31.16 E-value=1.4e+02 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=24.3
Q ss_pred CCCcEEEEEEeCceEEEEEcCCCCchhHHHHHHhhcCC
Q 027035 26 LGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLG 63 (229)
Q Consensus 26 ~~~~~v~~~T~~G~I~ieL~~d~aP~t~~nF~~l~~~g 63 (229)
.....|.+-|+.| +..||..=++|.++++.+
T Consensus 40 k~~~VVELfTSQG-------CsSCPPAd~~l~k~a~~~ 70 (261)
T COG5429 40 KPLGVVELFTSQG-------CSSCPPADANLAKLADDP 70 (261)
T ss_pred CCceEEEEeecCC-------cCCCChHHHHHHHhccCC
Confidence 3345667777777 578999999999999865
No 74
>TIGR03780 Bac_Flav_CT_N Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids.
Probab=30.76 E-value=1.1e+02 Score=26.95 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027035 1 MLNVIRIFLTLITLIGTA 18 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (229)
||+++.+++++++++.++
T Consensus 1 mk~~~~~~~~~~~~~~~~ 18 (285)
T TIGR03780 1 MKKIFGIMLASLLGVLAS 18 (285)
T ss_pred CcchHHHHHHHHHHHHHh
Confidence 888885444444444443
No 75
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=30.58 E-value=43 Score=26.48 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027035 1 MLNVIRIFLTLITLIGTAS 19 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (229)
|+|+..+.+++++|.+|+.
T Consensus 1 Mrk~l~~~~l~l~LaGCAt 19 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT 19 (151)
T ss_pred ChhHHHHHHHHHHHhcccC
Confidence 7888888777777777774
No 76
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=30.57 E-value=84 Score=24.38 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHHH
Q 027035 1 MLNVIRIFLTLITLI 15 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (229)
||+.+++++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 777777776666554
No 77
>PRK10386 curli assembly protein CsgE; Provisional
Probab=29.44 E-value=85 Score=24.20 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHHHhccCCCC
Q 027035 1 MLNVIRIFLTLITLIGTASSQE 22 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (229)
|||+....+++++++++.+..+
T Consensus 1 ~~r~~~~~l~~~~l~~~~~~~a 22 (130)
T PRK10386 1 MKRYLRWIVAAELLFAAGNLHA 22 (130)
T ss_pred ChhHHHHHHHHHHHHhCccccc
Confidence 8998877676666655554433
No 78
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=29.32 E-value=1.6e+02 Score=24.45 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.0
Q ss_pred cEEEEEEeCceEEEEEcCCCCchh
Q 027035 29 ARVVFQTNYGDIEFGFYPSVAPQT 52 (229)
Q Consensus 29 ~~v~~~T~~G~I~ieL~~d~aP~t 52 (229)
.+..++-+.|.|+||--.+..|+.
T Consensus 88 tRa~VdFd~G~I~VETi~~~~p~~ 111 (204)
T PF11873_consen 88 TRAHVDFDKGTITVETIAQTDPKA 111 (204)
T ss_pred eEEEEEeeCCeEEEEecCCcCHHH
Confidence 355677779999999999988843
No 79
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=29.15 E-value=70 Score=26.85 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=15.4
Q ss_pred CCCcEEEEEEeCceEEEEEcCC
Q 027035 26 LGSARVVFQTNYGDIEFGFYPS 47 (229)
Q Consensus 26 ~~~~~v~~~T~~G~I~ieL~~d 47 (229)
....+|++.-+.....+.|...
T Consensus 25 l~~TRvI~~~~~~~~si~i~N~ 46 (228)
T PRK15208 25 LSSTRVIYDGSKKEASLTVNNK 46 (228)
T ss_pred eCceEEEEeCCCceEEEEEEeC
Confidence 3445788887777788888553
No 80
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=29.02 E-value=75 Score=20.75 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=13.1
Q ss_pred ChhHHHHHHHHHHH-HhccCCCCCC
Q 027035 1 MLNVIRIFLTLITL-IGTASSQEDP 24 (229)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~p 24 (229)
||.++.++|.+.+. -..+++..-|
T Consensus 1 mknllkillilafa~pvfassmq~p 25 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVFASSMQMP 25 (65)
T ss_pred ChhHHHHHHHHHHhhhHhhhcccCC
Confidence 78888776654433 2334444444
No 81
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=28.69 E-value=1.7e+02 Score=21.36 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=28.2
Q ss_pred EEEEeeeecCCcchhHHHHHHHHHhhhHHHHHHHHHhh
Q 027035 182 TIHSSYYYDTEMEICEKERSVLKRRLTASVIEIERQVI 219 (229)
Q Consensus 182 ~I~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (229)
......-|-|+|+-+.++.-+.+++|+++.+..+.|..
T Consensus 62 krwwtvalcdefdmikee~~emkkdleaankrve~q~e 99 (122)
T PF05325_consen 62 KRWWTVALCDEFDMIKEETIEMKKDLEAANKRVESQAE 99 (122)
T ss_pred eeEEeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455556788888888888889999988877765544
No 82
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=28.53 E-value=43 Score=30.25 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=33.0
Q ss_pred CCCccEEEEecCCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEc-CHHHHHHHhc
Q 027035 112 KHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTK-GDETLRKLEG 165 (229)
Q Consensus 112 ~h~~G~lsma~~~~~~~~~sqFfI~l~~~~~ld~~~~vFG~Vi~-G~~vl~~I~~ 165 (229)
...+|.|.+.| ..-.....+.-|++.+.|. |++.-|+|+|.+ -+..|+-|..
T Consensus 297 ~r~~G~ItIdN-~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 297 ERKRGDITIDN-ENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp -B-TTEEEEE--GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred cccCceEEEeC-CCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 34899999998 4445556689999999985 888999999995 6778877753
No 83
>TIGR01781 Trep_dent_lipo Treponema denticola clustered lipoprotein. This model represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighboring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown.
Probab=28.29 E-value=29 Score=31.01 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHhccCCCCCCCC
Q 027035 3 NVIRIFLTLITLIGTASSQEDPQL 26 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~p~~ 26 (229)
+++++++|.++|++|+..-..|..
T Consensus 7 klifil~la~llfsc~ke~ke~~~ 30 (412)
T TIGR01781 7 KLIFILMLAVLLFSCKKEDKESGL 30 (412)
T ss_pred eehHHHHHHHHHhhchHhhcccch
Confidence 688889999999999877555543
No 84
>PF09710 Trep_dent_lipo: Treponema clustered lipoprotein (Trep_dent_lipo); InterPro: IPR019122 This entry represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighbouring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown.
Probab=26.87 E-value=35 Score=30.70 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhccCCCC
Q 027035 3 NVIRIFLTLITLIGTASSQE 22 (229)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (229)
+++++++|.++||||+-.-.
T Consensus 4 KLIFILila~~LFSCsKEvK 23 (394)
T PF09710_consen 4 KLIFILILAAFLFSCSKEVK 23 (394)
T ss_pred eehHHHHHHHHHhhcchhhc
Confidence 78899999999999974433
No 85
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=25.97 E-value=67 Score=27.52 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027035 1 MLNVIRIFLTLITLIGTASSQ 21 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (229)
|+++++++++++.|.+|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (289)
T TIGR03659 3 ILSLILLALLSLGLTGCSSSK 23 (289)
T ss_pred hhHHHHHHHHHHHHHhccccc
Confidence 568888888888888888774
No 86
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=25.57 E-value=50 Score=30.49 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=14.2
Q ss_pred CCcEEEEEEcCHHHHHHHhc
Q 027035 146 QYAVFGKVTKGDETLRKLEG 165 (229)
Q Consensus 146 ~~~vFG~Vi~G~~vl~~I~~ 165 (229)
+-|+||+=-.|..|.--+..
T Consensus 209 ~VTl~G~SAGa~sv~~~l~s 228 (535)
T PF00135_consen 209 NVTLFGQSAGAASVSLLLLS 228 (535)
T ss_dssp EEEEEEETHHHHHHHHHHHG
T ss_pred ceeeeeecccccccceeeec
Confidence 46788887777777666665
No 87
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=25.51 E-value=63 Score=22.50 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027035 1 MLNVIRIFLTLITLIGTA 18 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (229)
|||++..++.++.+.+.+
T Consensus 1 MKK~~~~~~~i~~l~~~s 18 (80)
T PF11106_consen 1 MKKIIYGLFAILALASSS 18 (80)
T ss_pred ChhHHHHHHHHHHHHhcc
Confidence 899875544444444333
No 88
>COG5510 Predicted small secreted protein [Function unknown]
Probab=25.49 E-value=65 Score=19.89 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=8.2
Q ss_pred Chh---HHHHHHHHHHHHhcc
Q 027035 1 MLN---VIRIFLTLITLIGTA 18 (229)
Q Consensus 1 ~~~---~~~~~~~~~~~~~~~ 18 (229)
||+ ++.++++..+++++|
T Consensus 2 mk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 2 MKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 666 344444444444433
No 89
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=25.10 E-value=97 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=14.8
Q ss_pred HHHHhccCCCCCCCCCCcEEEEEEeCceEEE
Q 027035 12 ITLIGTASSQEDPQLGSARVVFQTNYGDIEF 42 (229)
Q Consensus 12 ~~~~~~~~~~~~p~~~~~~v~~~T~~G~I~i 42 (229)
+++.+|++++ .......++++-..|++++
T Consensus 12 ~~~~~~~~~~--~~~~~~~~ti~d~~G~~~l 40 (317)
T PRK10957 12 LLLSGIAAAQ--ASAAGWPRTVTDSRGSVTL 40 (317)
T ss_pred HHHhccCCCc--ccccCCCEEEEcCCcCEec
Confidence 3344554443 2222345677777787543
No 90
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=24.10 E-value=42 Score=16.70 Aligned_cols=6 Identities=50% Similarity=0.235 Sum_probs=2.3
Q ss_pred ChhHHH
Q 027035 1 MLNVIR 6 (229)
Q Consensus 1 ~~~~~~ 6 (229)
||-++.
T Consensus 2 Mk~vII 7 (19)
T PF13956_consen 2 MKLVII 7 (19)
T ss_pred ceehHH
Confidence 343333
No 91
>COG3045 CreA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.88 E-value=2.4e+02 Score=22.44 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=8.2
Q ss_pred eEEEEEcCCC
Q 027035 39 DIEFGFYPSV 48 (229)
Q Consensus 39 ~I~ieL~~d~ 48 (229)
.|+||-|.|=
T Consensus 41 ~IvveafdDP 50 (165)
T COG3045 41 HIVVEAFDDP 50 (165)
T ss_pred cEEEEecCCC
Confidence 3999999873
No 92
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=23.77 E-value=69 Score=25.84 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=13.2
Q ss_pred ChhHHHHHHH-HHHHHhccCCC
Q 027035 1 MLNVIRIFLT-LITLIGTASSQ 21 (229)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~ 21 (229)
||+++.++++ ||+|++-++..
T Consensus 1 mkklikill~slflllsisc~h 22 (254)
T PF03207_consen 1 MKKLIKILLLSLFLLLSISCVH 22 (254)
T ss_pred ChhHHHHHHHHHHHHHhhhhcc
Confidence 8999888776 44444444443
No 93
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.71 E-value=59 Score=24.12 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=9.3
Q ss_pred ChhHHHHHHHHHHH
Q 027035 1 MLNVIRIFLTLITL 14 (229)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (229)
||+++++++++++.
T Consensus 1 MKk~~ll~~~ll~s 14 (114)
T PF11777_consen 1 MKKIILLASLLLLS 14 (114)
T ss_pred CchHHHHHHHHHHH
Confidence 89887777444433
No 94
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=22.99 E-value=76 Score=26.80 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=14.8
Q ss_pred CCCcEEEEEEeCceEEEEEcCC
Q 027035 26 LGSARVVFQTNYGDIEFGFYPS 47 (229)
Q Consensus 26 ~~~~~v~~~T~~G~I~ieL~~d 47 (229)
.+..+|.+.-+.-...+.|..+
T Consensus 31 l~~TRvIy~~~~~~~sv~i~N~ 52 (228)
T PRK15188 31 LGATRVIYPQGSKQTSLPIINS 52 (228)
T ss_pred ECcEEEEEcCCCceEEEEEEeC
Confidence 3455777777777777777654
No 95
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.93 E-value=96 Score=26.06 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=12.5
Q ss_pred CCcEEEEEEeCceEEEEEcC
Q 027035 27 GSARVVFQTNYGDIEFGFYP 46 (229)
Q Consensus 27 ~~~~v~~~T~~G~I~ieL~~ 46 (229)
...+|.+.-+.....+.|.+
T Consensus 29 ~~tRvi~~~~~~~~si~v~N 48 (230)
T PRK09918 29 ETSVVIVEESDGEGSINVKN 48 (230)
T ss_pred ccEEEEEECCCCeEEEEEEc
Confidence 34467777666666666655
No 96
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=22.89 E-value=67 Score=26.39 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=11.2
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027035 1 MLNVIRIFLTLITLIGTAS 19 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (229)
+++++++++++++|.+|++
T Consensus 1 ~~~~~~~l~~~llLsgCa~ 19 (202)
T TIGR00548 1 RFRLFLALSALALLTACAG 19 (202)
T ss_pred CceeHHHHHHHHHHhhccC
Confidence 3566666665555666653
No 97
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=22.55 E-value=81 Score=24.78 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 027035 1 MLNVIRIFLTLITLIGTASS 20 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (229)
|+++..+++++++|.+|+..
T Consensus 1 mrk~~~~~~~al~LaGCaT~ 20 (145)
T PRK13835 1 LRRLLAACILALLLSGCQTL 20 (145)
T ss_pred ChhHHHHHHHHHHHhccccc
Confidence 78888777777777778774
No 98
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=21.54 E-value=43 Score=21.44 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=26.9
Q ss_pred EEEeeeecCCcchhHHHHHHHHHhhhHHHHHHHHHhhh
Q 027035 183 IHSSYYYDTEMEICEKERSVLKRRLTASVIEIERQVIR 220 (229)
Q Consensus 183 I~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (229)
+.+||-+...++.+...+++...++..-....++++.|
T Consensus 11 v~~cg~IrarleE~qa~i~~e~~~l~~~~~~lEq~~~K 48 (51)
T PF07197_consen 11 VVDCGSIRARLEEIQAQIPDELAKLATPAVYLEQHQFK 48 (51)
T ss_pred HhccchHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHH
Confidence 56788888888888777777777766666666655544
No 99
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=21.29 E-value=82 Score=27.72 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCCCCCCCCCCcEEEEEEeCceEEEEEcCCCCchhH
Q 027035 8 FLTLITLIGTASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTV 53 (229)
Q Consensus 8 ~~~~~~~~~~~~~~~~p~~~~~~v~~~T~~G~I~ieL~~d~aP~t~ 53 (229)
|++++++++|.............+.|.++ .+|.|.+.....+...
T Consensus 1 ~~~l~ll~SC~~~~~~~~~~~~~~~l~~~-dtl~~~~d~~~~~~~~ 45 (333)
T PF13970_consen 1 FLLLFLLFSCSSKKKKEEEKQDSIELEEK-DTLTFDLDDETLYLSY 45 (333)
T ss_dssp --------------------TTSEEEEEE-EEEEEE--TTS-S--S
T ss_pred CeeeEEEEEcCCCCCcccccCCceeEEEc-ceEEEcCCceeecccc
Confidence 34555667777664443223356777744 8999999988775433
No 100
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=20.94 E-value=66 Score=25.56 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=5.8
Q ss_pred ChhHHHHHH
Q 027035 1 MLNVIRIFL 9 (229)
Q Consensus 1 ~~~~~~~~~ 9 (229)
|||++++.+
T Consensus 1 m~~~~~~~~ 9 (171)
T PRK09934 1 MRRVFFACF 9 (171)
T ss_pred ChhHHHHHH
Confidence 888865443
No 101
>PHA00407 phage lambda Rz1-like protein
Probab=20.74 E-value=1.6e+02 Score=20.47 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHhccCCCCCCCCCCcEEEEEEe
Q 027035 8 FLTLITLIGTASSQEDPQLGSARVVFQTN 36 (229)
Q Consensus 8 ~~~~~~~~~~~~~~~~p~~~~~~v~~~T~ 36 (229)
++.....++.|++...|......|+++.+
T Consensus 39 llicv~tISGCaSes~lp~ep~k~TVDaS 67 (84)
T PHA00407 39 LLICVATISGCASESNLPVEPQKVTVDAS 67 (84)
T ss_pred HHHHHHHHhhhhhcccCCCCcccceeeee
Confidence 34444456777777777766677777655
No 102
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.70 E-value=1.9e+02 Score=19.08 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 027035 195 ICEKERSVLKRRLTASVIEIERQVIRSS 222 (229)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (229)
..|.++..++++|++.+.+.+..+...+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888877666655544433
No 103
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=20.67 E-value=1e+02 Score=24.62 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHHHHh-ccCC
Q 027035 1 MLNVIRIFLTLITLIG-TASS 20 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~ 20 (229)
|||..+..+++.++++ |.++
T Consensus 1 mkr~Lla~la~~~llAgC~~~ 21 (176)
T COG4314 1 MKRTLLAILAVTALLAGCRQA 21 (176)
T ss_pred CchhHHHHHHHHHHHHhcchh
Confidence 7777776666555555 5443
No 104
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=20.48 E-value=75 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=16.8
Q ss_pred CCCCCCCcEEEEEEeCceEEEEEcCC
Q 027035 22 EDPQLGSARVVFQTNYGDIEFGFYPS 47 (229)
Q Consensus 22 ~~p~~~~~~v~~~T~~G~I~ieL~~d 47 (229)
+.-.....+|++.-+...+.|.|..+
T Consensus 22 A~v~l~~TRvIy~~~~~~~si~i~N~ 47 (229)
T PRK15211 22 AAFVLNGTRFIYDEGRKNISFEVTNQ 47 (229)
T ss_pred EEEEECceEEEEcCCCceEEEEEEeC
Confidence 33334455788887777777777664
No 105
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=20.31 E-value=2.9e+02 Score=21.56 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCchhH---HHHHHhhcCCCcCCceEeEEe
Q 027035 38 GDIEFGFYPSVAPQTV---DHIFKLVRLGCYNTNHFFRVD 74 (229)
Q Consensus 38 G~I~ieL~~d~aP~t~---~nF~~l~~~g~Y~g~~f~ri~ 74 (229)
+.++|..|..++|... .-|.++++.-...+..|.+|.
T Consensus 48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VD 87 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKID 87 (152)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEE
Confidence 4689999999998433 244455543222345666663
No 106
>PF07400 IL11: Interleukin 11; InterPro: IPR020438 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-11 (IL-11) is a pleiotropic cytokine that stimulates megakaryocytopoiesis, resulting in increased production of platelets, as well as activating osteoclasts, inhibiting epithelial cell proliferation and apoptosis, and inhibiting macrophage mediator production. These functions may be particularly important in mediating the hematopoietic, osseous and mucosal protective effects of IL-11 []. The cytokine also possesses anti-inflammatory activity, and has been proposed as a therapeutic agent in the treatment of chronic inflammatory diseases, such as Crohn's disease and rheumatoid arthritis [].
Probab=20.12 E-value=53 Score=26.98 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE
Q 027035 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQ 34 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 34 (229)
|-|++++.+.++.++-.-.++..|.++.++|-++
T Consensus 1 ~~~~c~~~~~~lsl~~~~~~a~~p~~~~~~~~~~ 34 (199)
T PF07400_consen 1 MNCVCRLVLVVLSLWPDRAAAPGPPPGPPRVSPD 34 (199)
T ss_pred CCcchhhHHHHHHhCCCcccCCCCCCCCCCCCCC
Confidence 7789999999999988877778888877776554
Done!