Query 027037
Match_columns 229
No_of_seqs 142 out of 336
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 1E-71 3.5E-76 499.9 14.3 184 1-229 93-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.2E-68 4.1E-73 473.2 14.6 178 1-223 69-246 (246)
3 2ql8_A Putative redox protein; 26.1 45 0.0015 25.5 3.0 15 209-223 46-60 (143)
4 1lql_A OSMC, osmotical inducib 25.1 44 0.0015 26.5 2.8 15 209-223 64-78 (166)
5 2bjo_A Organic hydroperoxide r 22.0 61 0.0021 24.4 3.0 15 209-223 42-56 (136)
6 2ypj_A Eccel5A, endoglucanase 21.2 59 0.002 25.5 2.7 27 169-202 68-94 (155)
7 4ba6_A Endoglucanase CEL5A; ca 20.4 63 0.0022 25.1 2.7 27 169-202 49-75 (144)
8 3cgm_A SLYD, peptidyl-prolyl C 19.9 1.3E+02 0.0044 23.8 4.6 24 188-211 100-123 (158)
9 3eer_A Organic hydroperoxide r 18.9 74 0.0025 24.6 2.9 15 209-223 51-65 (148)
10 1zxu_A AT5G01750 protein; PFAM 17.5 2.1E+02 0.0072 23.2 5.5 43 168-220 154-204 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=1e-71 Score=499.91 Aligned_cols=184 Identities=43% Similarity=0.726 Sum_probs=134.5
Q ss_pred CCCCCCceEEEeccccccceEEEecCCCCCCCCccccccccccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEE
Q 027037 1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC 80 (229)
Q Consensus 1 ~Sr~s~~yvGKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ela~I~Ye~NvLg~rGPRkM~v 80 (229)
|||++++|||||||||+||+|+|||+|.+++.+ .||.++..|+|||+|.||+||||++|||+|+|
T Consensus 93 lsr~s~~yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v 157 (276)
T 2fim_A 93 LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTV 157 (276)
T ss_dssp ------CEEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEE
T ss_pred cccCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEE
Confidence 689999999999999999999999999876432 24566778999999999999999999999999
Q ss_pred eeccCCcccccCCCCCCccceeecCCCCCCCCcccccccCcccccccCCccccCCCceEEEeeCCCccccCCceEEeccC
Q 027037 81 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFH 160 (229)
Q Consensus 81 iip~ip~~~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~~~y~LnF~ 160 (229)
+||.+. ++|+..|.+ +.. ..++++.++++...+++++|+||+|+|||++|||||||+
T Consensus 158 ~iP~~~----~~~~~~~~~---p~~----------------~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~ 214 (276)
T 2fim_A 158 IIPGMS----AENERVPIR---PRN----------------ASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQ 214 (276)
T ss_dssp EEECBC----TTSCBCCCC---CSS----------------TTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCT
T ss_pred EecCcc----cCCCEeccc---CCC----------------cccccchhhhccCCcceEeeeccCCcccccCCEEEEecC
Confidence 998642 234333221 111 112222233344567899999999999999999999999
Q ss_pred CcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 027037 161 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229 (229)
Q Consensus 161 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAFaiaLssfd~K~~Ce 229 (229)
||||+|||||||||+++ ++++||||||||++|+|+|||+|||||||||||||||||+|+|||
T Consensus 215 GRVt~aSvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 215 GRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp TCCCSCCTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred CeeeccccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 99999999999999974 578999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.2e-68 Score=473.24 Aligned_cols=178 Identities=42% Similarity=0.709 Sum_probs=140.5
Q ss_pred CCCCCCceEEEeccccccceEEEecCCCCCCCCccccccccccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEE
Q 027037 1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC 80 (229)
Q Consensus 1 ~Sr~s~~yvGKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ela~I~Ye~NvLg~rGPRkM~v 80 (229)
|||++++|||||||||+||+|+|||+|.+++.+ .||.++.+|+|||+|.||+||||++|||+|+|
T Consensus 69 lsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v 133 (246)
T 3c5n_A 69 LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTV 133 (246)
T ss_dssp ------CEEEEEEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEE
T ss_pred cccCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEE
Confidence 689999999999999999999999999876432 24566778999999999999999999999999
Q ss_pred eeccCCcccccCCCCCCccceeecCCCCCCCCcccccccCcccccccCCccccCCCceEEEeeCCCccccCCceEEeccC
Q 027037 81 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFH 160 (229)
Q Consensus 81 iip~ip~~~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~~~y~LnF~ 160 (229)
+||.+. ++|+..|.+ +.. ..|+++.++++...+++++|+||+|+|||++|||||||+
T Consensus 134 ~iP~~~----~~~~~~~~~---p~~----------------~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~ 190 (246)
T 3c5n_A 134 IIPGMS----AENERVPIR---PRN----------------ASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQ 190 (246)
T ss_dssp EEECBC----TTSCBCCCC---CSS----------------TTSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCT
T ss_pred EecCcc----cCCCEeecc---CCC----------------ccccchhhhhccCCcceEEEeccCCcccccCCEEEEecC
Confidence 998642 234333221 111 112222233344567899999999999999999999999
Q ss_pred CcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 027037 161 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 223 (229)
Q Consensus 161 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAFaiaLssfd 223 (229)
||||+|||||||||+++ ++++||||||||++|+|+|||+|||||||||||||||||
T Consensus 191 GRvt~aSvKNFqLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 191 GRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp TSCCBCCTTCEEEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred CeeeccccceEEEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 99999999999999974 578999999999999999999999999999999999998
No 3
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=26.09 E-value=45 Score=25.52 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhCc
Q 027037 209 ISAFQAFAICLSSFD 223 (229)
Q Consensus 209 lS~~QAFaiaLssfd 223 (229)
.+|.|.|+.||++|-
T Consensus 46 ~nP~eLllaala~C~ 60 (143)
T 2ql8_A 46 TNPEQLLGLSLSTCL 60 (143)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 599999999999864
No 4
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=25.09 E-value=44 Score=26.48 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhCc
Q 027037 209 ISAFQAFAICLSSFD 223 (229)
Q Consensus 209 lS~~QAFaiaLssfd 223 (229)
.+|.|.|+.||++|-
T Consensus 64 ~nP~ELllaalaaC~ 78 (166)
T 1lql_A 64 FGPLAALLSGLAACE 78 (166)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 599999999999864
No 5
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=22.03 E-value=61 Score=24.37 Aligned_cols=15 Identities=20% Similarity=0.040 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHhCc
Q 027037 209 ISAFQAFAICLSSFD 223 (229)
Q Consensus 209 lS~~QAFaiaLssfd 223 (229)
.+|.|.|+.||++|-
T Consensus 42 ~nP~eLllaala~C~ 56 (136)
T 2bjo_A 42 TNPEQLFAAGYAACF 56 (136)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 499999999999864
No 6
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=21.16 E-value=59 Score=25.53 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=20.8
Q ss_pred ceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeE
Q 027037 169 KNFQLVASPENGPAGLEHEKIILQFGKVGKDLFT 202 (229)
Q Consensus 169 KNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~ 202 (229)
|||.+-..- ....|||.|.|+.++++.
T Consensus 68 knfeikvdy-------~gadivlifarw~~~iwa 94 (155)
T 2ypj_A 68 KNFEIKVDY-------NGADIVLIFARWDKDIWA 94 (155)
T ss_dssp SCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred cCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 899986541 245799999999998764
No 7
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=20.42 E-value=63 Score=25.09 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred ceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeE
Q 027037 169 KNFQLVASPENGPAGLEHEKIILQFGKVGKDLFT 202 (229)
Q Consensus 169 KNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~ 202 (229)
|||.+-..- ....|||.|.|+.++++.
T Consensus 49 knfeikvdy-------~gadivlifarw~~~iwa 75 (144)
T 4ba6_A 49 KNFEIKVDY-------NGADIVLIFARWDKDIWA 75 (144)
T ss_dssp SCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred cCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 899986541 245699999999998764
No 8
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=19.89 E-value=1.3e+02 Score=23.75 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=19.0
Q ss_pred eEEEEeeecCCCeeEEEccCCCCH
Q 027037 188 KIILQFGKVGKDLFTMDYRYPISA 211 (229)
Q Consensus 188 ~ivlqfGKv~~~~F~lD~~~PlS~ 211 (229)
.+....=++.++..++|+.+||..
T Consensus 100 ~~~~~V~~v~~~~v~vD~NHPLAG 123 (158)
T 3cgm_A 100 PMPLTVVAVEGEEVTVDFNHPLAG 123 (158)
T ss_dssp EEEEEEEEEETTEEEEECSCTTTT
T ss_pred EEEEEEEEECCCEEEEeCCccccC
Confidence 344456688999999999999963
No 9
>3eer_A Organic hydroperoxide resistance protein, putativ; csgid, ORHC, struc genomics; 1.45A {Vibrio cholerae o1 biovar el tor} SCOP: d.227.1.0 PDB: 3i07_A* 3lus_A*
Probab=18.91 E-value=74 Score=24.56 Aligned_cols=15 Identities=20% Similarity=0.126 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHhCc
Q 027037 209 ISAFQAFAICLSSFD 223 (229)
Q Consensus 209 lS~~QAFaiaLssfd 223 (229)
.+|.|.|+.||++|-
T Consensus 51 ~nP~eLllaalaaC~ 65 (148)
T 3eer_A 51 TNPEQLFAVGYAACF 65 (148)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 599999999999863
No 10
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=17.47 E-value=2.1e+02 Score=23.19 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=27.9
Q ss_pred cceeEEEeCCCCCCCCCCCCeEEEEeeec--------CCCeeEEEccCCCCHHHHHHHHHH
Q 027037 168 VKNFQLVASPENGPAGLEHEKIILQFGKV--------GKDLFTMDYRYPISAFQAFAICLS 220 (229)
Q Consensus 168 vKNFQLv~~~~~~~~~~~~~~ivlqfGKv--------~~~~F~lD~~~PlS~~QAFaiaLs 220 (229)
-.+|.++..+ .+.+|.+.-|- ++|.|.|++.--+- .||+|||.
T Consensus 154 ~~~f~I~~~~--------~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~~D--~aliialv 204 (217)
T 1zxu_A 154 ERSCVVYAGE--------SDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVD--YAFIASLV 204 (217)
T ss_dssp TTCCEEEETT--------TCCEEEEEEEC--------CBCSEEEEECTTSB--HHHHHHHH
T ss_pred CCEEEEEECC--------CCEEEEEEEeeeeccccccCCcEEEEEECCCCC--HHHHHHHH
Confidence 4678887641 25677777763 56999999943233 36666654
Done!