Query 027038
Match_columns 229
No_of_seqs 199 out of 1221
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 3.8E-61 8.3E-66 424.0 14.5 229 1-229 62-294 (294)
2 COG2119 Predicted membrane pro 100.0 8.4E-52 1.8E-56 349.5 19.5 185 5-227 1-186 (190)
3 PF01169 UPF0016: Uncharacteri 99.9 1.4E-25 3.1E-30 167.0 6.9 76 144-219 1-78 (78)
4 PF01169 UPF0016: Uncharacteri 99.9 1E-24 2.2E-29 162.4 6.9 76 8-83 1-78 (78)
5 COG2119 Predicted membrane pro 99.9 4.1E-21 8.8E-26 163.0 10.9 87 5-91 99-186 (190)
6 KOG2881 Predicted membrane pro 99.7 1.6E-18 3.6E-23 153.9 4.8 87 5-91 206-292 (294)
7 PRK11469 hypothetical protein; 98.2 2.2E-05 4.8E-10 67.4 12.3 138 48-226 47-185 (188)
8 TIGR02840 spore_YtaF putative 98.2 3.5E-05 7.6E-10 66.9 13.3 50 45-94 37-86 (206)
9 COG4280 Predicted membrane pro 98.2 3.4E-05 7.4E-10 67.1 12.3 163 35-227 31-200 (236)
10 PF01810 LysE: LysE type trans 98.1 0.00026 5.6E-09 59.2 15.1 169 26-226 12-191 (191)
11 COG1971 Predicted membrane pro 97.8 0.00043 9.4E-09 59.7 12.9 44 50-93 45-91 (190)
12 PF03596 Cad: Cadmium resistan 97.5 0.00084 1.8E-08 58.0 9.1 153 37-226 25-182 (191)
13 PRK10229 threonine efflux syst 96.8 0.11 2.3E-06 44.2 15.8 76 15-91 14-94 (206)
14 TIGR00949 2A76 The Resistance 96.8 0.035 7.7E-07 46.2 12.6 63 28-90 9-76 (185)
15 PF03741 TerC: Integral membra 96.7 0.12 2.6E-06 44.2 15.4 163 21-224 12-182 (183)
16 COG0730 Predicted permeases [G 96.5 0.097 2.1E-06 46.0 13.8 174 37-226 68-254 (258)
17 PF01914 MarC: MarC family int 96.4 0.1 2.3E-06 45.2 12.9 151 40-227 40-199 (203)
18 TIGR03718 R_switched_Alx integ 96.1 0.19 4.1E-06 46.4 13.9 196 10-226 63-270 (302)
19 TIGR00145 FTR1 family protein. 96.1 0.34 7.5E-06 44.2 15.2 156 37-224 38-200 (283)
20 PRK10958 leucine export protei 96.1 0.82 1.8E-05 39.4 16.9 74 17-91 21-99 (212)
21 PRK09304 arginine exporter pro 95.9 0.53 1.1E-05 40.3 15.1 75 15-90 14-91 (207)
22 PRK10621 hypothetical protein; 95.9 0.5 1.1E-05 42.0 15.3 166 38-226 73-254 (266)
23 COG4300 CadD Predicted permeas 95.8 0.022 4.8E-07 49.1 5.8 75 15-90 11-88 (205)
24 TIGR03716 R_switched_YkoY inte 95.8 0.12 2.6E-06 45.5 10.6 158 21-226 9-174 (215)
25 PRK10520 rhtB homoserine/homos 95.7 0.67 1.5E-05 39.4 14.8 76 14-90 14-94 (205)
26 PF03239 FTR1: Iron permease F 95.7 0.69 1.5E-05 42.3 15.7 168 37-224 35-215 (306)
27 COG1280 RhtB Putative threonin 95.6 1.4 3E-05 38.0 17.3 69 20-90 20-94 (208)
28 PRK10995 inner membrane protei 95.4 0.16 3.5E-06 44.4 9.9 52 40-92 44-97 (221)
29 PF01925 TauE: Sulfite exporte 95.2 0.6 1.3E-05 40.0 12.9 50 41-90 62-111 (240)
30 PRK10323 cysteine/O-acetylseri 94.9 2 4.4E-05 36.4 16.3 69 22-90 21-94 (195)
31 TIGR02840 spore_YtaF putative 94.1 0.07 1.5E-06 46.3 4.3 54 174-227 30-83 (206)
32 TIGR03717 R_switched_YjbE inte 94.0 2.6 5.6E-05 35.8 13.5 152 21-224 14-174 (176)
33 PRK11111 hypothetical protein; 93.2 0.26 5.7E-06 43.2 6.4 152 39-227 45-205 (214)
34 TIGR00948 2a75 L-lysine export 93.1 2.9 6.2E-05 34.6 12.4 63 29-91 13-78 (177)
35 PRK10019 nickel/cobalt efflux 93.1 4.1 8.9E-05 37.3 14.1 70 150-226 199-273 (279)
36 PRK10739 putative antibiotic t 92.9 2.4 5.2E-05 36.7 11.8 148 39-227 39-191 (197)
37 TIGR00779 cad cadmium resistan 92.7 0.43 9.3E-06 41.4 6.9 55 34-89 21-75 (193)
38 COG4280 Predicted membrane pro 92.6 0.22 4.8E-06 43.8 5.0 81 142-227 4-86 (236)
39 TIGR00427 membrane protein, Ma 91.1 2.7 5.8E-05 36.4 10.1 152 38-226 41-200 (201)
40 COG0861 TerC Membrane protein 90.8 6.9 0.00015 35.3 12.7 186 10-226 18-212 (254)
41 PRK11469 hypothetical protein; 89.1 0.69 1.5E-05 39.7 4.8 42 185-227 48-89 (188)
42 PRK00293 dipZ thiol:disulfide 88.9 11 0.00023 37.6 13.6 48 40-87 215-262 (571)
43 PF02659 DUF204: Domain of unk 80.6 3.5 7.7E-05 29.0 4.3 38 181-219 30-67 (67)
44 COG2095 MarC Multiple antibiot 80.4 12 0.00025 32.8 8.3 149 39-227 42-196 (203)
45 PF03596 Cad: Cadmium resistan 79.7 12 0.00026 32.4 8.1 55 172-227 24-78 (191)
46 PF01810 LysE: LysE type trans 79.6 10 0.00022 31.4 7.5 48 43-90 141-191 (191)
47 PF11139 DUF2910: Protein of u 78.3 42 0.00092 28.7 16.2 52 39-90 33-90 (214)
48 COG1971 Predicted membrane pro 75.7 6.7 0.00015 34.1 5.4 44 184-228 47-90 (190)
49 TIGR00704 NaPi_cotrn_rel Na/Pi 74.1 74 0.0016 29.4 14.2 122 68-218 127-255 (307)
50 TIGR00779 cad cadmium resistan 73.1 15 0.00032 32.0 6.9 56 170-226 21-76 (193)
51 PF02659 DUF204: Domain of unk 72.2 5.7 0.00012 27.9 3.5 36 47-83 32-67 (67)
52 PF04474 DUF554: Protein of un 71.1 76 0.0017 28.2 17.2 159 51-224 10-203 (226)
53 COG2215 ABC-type uncharacteriz 70.8 76 0.0016 29.6 11.3 75 18-92 70-154 (303)
54 COG2814 AraJ Arabinose efflux 68.2 1.2E+02 0.0025 29.2 13.4 53 27-79 125-177 (394)
55 PF07332 DUF1469: Protein of u 66.3 43 0.00093 25.8 7.7 51 40-90 41-93 (121)
56 PF02683 DsbD: Cytochrome C bi 65.9 83 0.0018 26.7 15.5 47 40-88 47-93 (211)
57 PF13386 DsbD_2: Cytochrome C 64.4 87 0.0019 26.4 13.8 49 40-88 38-90 (199)
58 PF08285 DPM3: Dolichol-phosph 61.3 15 0.00032 28.2 4.1 43 69-111 35-81 (91)
59 COG0730 Predicted permeases [G 60.6 24 0.00051 30.8 5.9 44 47-90 211-254 (258)
60 PF03739 YjgP_YjgQ: Predicted 60.6 32 0.0007 31.0 6.9 63 26-88 287-353 (354)
61 TIGR00704 NaPi_cotrn_rel Na/Pi 58.4 1.2E+02 0.0027 28.0 10.3 25 69-93 3-27 (307)
62 PRK15071 lipopolysaccharide AB 58.2 84 0.0018 28.7 9.3 64 26-89 286-354 (356)
63 PF01925 TauE: Sulfite exporte 57.3 29 0.00062 29.5 5.7 46 41-86 195-240 (240)
64 PRK10621 hypothetical protein; 56.2 42 0.0009 29.7 6.7 49 176-224 75-123 (266)
65 PF07690 MFS_1: Major Facilita 56.0 77 0.0017 27.2 8.3 37 48-84 130-166 (352)
66 KOG0569 Permease of the major 55.0 1.1E+02 0.0025 30.0 10.0 41 180-220 310-350 (485)
67 KOG2325 Predicted transporter/ 52.9 98 0.0021 30.6 9.2 81 142-222 266-351 (488)
68 COG0795 Predicted permeases [G 50.1 60 0.0013 29.8 7.0 65 26-90 292-361 (364)
69 PRK15120 lipopolysaccharide AB 49.8 63 0.0014 29.8 7.1 62 27-88 282-347 (366)
70 PRK00259 intracellular septati 44.6 66 0.0014 27.5 5.8 46 177-224 22-67 (179)
71 PRK01637 hypothetical protein; 43.0 49 0.0011 29.7 5.1 28 38-65 202-229 (286)
72 PF07857 DUF1632: CEO family ( 43.0 1E+02 0.0022 27.8 7.1 45 42-87 79-132 (254)
73 PF13347 MFS_2: MFS/sugar tran 42.4 2.8E+02 0.006 25.5 10.8 41 183-223 268-308 (428)
74 PRK11102 bicyclomycin/multidru 40.6 2.6E+02 0.0056 24.6 13.4 28 188-215 243-270 (377)
75 PRK09304 arginine exporter pro 40.0 74 0.0016 27.0 5.5 43 49-91 157-203 (207)
76 COG1283 NptA Na+/phosphate sym 39.9 4.1E+02 0.0088 26.8 12.2 95 69-193 6-105 (533)
77 TIGR00895 2A0115 benzoate tran 38.4 2.7E+02 0.0058 24.2 15.0 20 186-205 296-315 (398)
78 PRK00293 dipZ thiol:disulfide 38.2 83 0.0018 31.4 6.3 47 177-223 216-262 (571)
79 PRK00944 hypothetical protein; 37.8 85 0.0019 27.3 5.4 59 33-92 114-175 (195)
80 PRK10995 inner membrane protei 36.4 1.4E+02 0.0031 25.9 6.8 37 190-226 57-95 (221)
81 PRK10323 cysteine/O-acetylseri 35.9 1.1E+02 0.0024 25.7 5.9 21 68-88 175-195 (195)
82 TIGR03716 R_switched_YkoY inte 35.6 1.2E+02 0.0026 26.7 6.2 58 31-91 118-175 (215)
83 COG4300 CadD Predicted permeas 35.2 3.1E+02 0.0067 24.0 9.6 74 152-226 12-88 (205)
84 PF14007 YtpI: YtpI-like prote 34.6 80 0.0017 24.1 4.3 26 203-228 54-79 (89)
85 PF08229 SHR3_chaperone: ER me 34.4 50 0.0011 28.8 3.6 51 39-90 88-153 (196)
86 PF03741 TerC: Integral membra 33.6 1.1E+02 0.0023 26.1 5.5 52 35-89 132-183 (183)
87 TIGR00948 2a75 L-lysine export 33.1 1.6E+02 0.0035 24.1 6.4 53 174-226 23-77 (177)
88 COG1238 Predicted membrane pro 33.0 2.7E+02 0.0058 23.4 7.7 63 141-204 20-82 (161)
89 PF02535 Zip: ZIP Zinc transpo 32.3 2.5E+02 0.0055 24.7 7.9 77 10-87 202-285 (317)
90 TIGR00949 2A76 The Resistance 32.1 1.3E+02 0.0027 24.7 5.6 53 173-225 21-75 (185)
91 PF13150 DUF3989: Protein of u 32.0 76 0.0017 24.0 3.8 28 198-225 18-45 (85)
92 PF11118 DUF2627: Protein of u 32.0 2.2E+02 0.0048 21.3 6.1 33 55-88 26-58 (77)
93 TIGR00900 2A0121 H+ Antiporter 31.9 3.3E+02 0.0071 23.3 14.1 33 53-85 142-174 (365)
94 TIGR03717 R_switched_YjbE inte 31.5 1.7E+02 0.0036 24.8 6.3 53 34-89 123-175 (176)
95 TIGR03718 R_switched_Alx integ 31.2 2.6E+02 0.0056 26.0 7.9 74 14-90 194-270 (302)
96 TIGR02230 ATPase_gene1 F0F1-AT 30.4 1E+02 0.0023 24.0 4.4 25 46-70 50-74 (100)
97 PF10755 DUF2585: Protein of u 30.2 1.5E+02 0.0033 25.2 5.6 51 40-91 95-145 (165)
98 PF02487 CLN3: CLN3 protein; 28.7 3.2E+02 0.007 26.3 8.4 32 190-221 292-323 (402)
99 PRK10019 nickel/cobalt efflux 28.7 3.9E+02 0.0085 24.5 8.5 50 42-91 220-274 (279)
100 TIGR00997 ispZ intracellular s 28.4 1.5E+02 0.0034 25.3 5.5 46 177-224 22-67 (178)
101 PF11368 DUF3169: Protein of u 28.3 2E+02 0.0044 25.2 6.5 13 186-198 140-152 (248)
102 TIGR02230 ATPase_gene1 F0F1-AT 28.2 1.1E+02 0.0025 23.8 4.3 25 182-206 50-74 (100)
103 COG2215 ABC-type uncharacteriz 28.0 1.7E+02 0.0037 27.3 6.1 68 159-226 76-152 (303)
104 PF14007 YtpI: YtpI-like prote 27.6 1.6E+02 0.0036 22.4 5.0 27 66-92 53-79 (89)
105 PF11139 DUF2910: Protein of u 27.6 2.3E+02 0.0051 24.0 6.6 53 174-226 32-90 (214)
106 PRK00259 intracellular septati 27.3 2E+02 0.0043 24.5 6.0 47 41-89 22-68 (179)
107 PF05360 YiaAB: yiaA/B two hel 27.1 2.1E+02 0.0045 19.5 6.4 48 43-90 3-50 (53)
108 COG1280 RhtB Putative threonin 27.0 1.3E+02 0.0028 25.7 5.0 23 68-90 185-207 (208)
109 PF01914 MarC: MarC family int 26.7 2.4E+02 0.0053 24.2 6.6 71 21-91 123-199 (203)
110 COG2917 Intracellular septatio 26.6 1.8E+02 0.004 25.1 5.6 48 177-226 22-69 (180)
111 PRK10229 threonine efflux syst 26.6 3.8E+02 0.0082 22.4 8.2 70 156-226 19-93 (206)
112 COG0861 TerC Membrane protein 26.4 2.1E+02 0.0046 25.8 6.4 54 35-91 160-213 (254)
113 PF06166 DUF979: Protein of un 25.3 5.7E+02 0.012 23.9 10.6 50 140-200 94-143 (308)
114 TIGR00997 ispZ intracellular s 25.1 2.4E+02 0.0051 24.2 6.1 46 43-90 24-69 (178)
115 PF04955 HupE_UreJ: HupE / Ure 24.7 1.8E+02 0.004 24.7 5.3 47 174-221 133-179 (180)
116 PF08507 COPI_assoc: COPI asso 24.5 2.3E+02 0.0049 22.6 5.6 23 69-91 85-107 (136)
117 PF02683 DsbD: Cytochrome C bi 24.2 2.4E+02 0.0053 23.8 6.1 44 178-223 49-92 (211)
118 cd02437 CCC1_like_1 CCC1-relat 24.0 1.7E+02 0.0037 24.4 5.0 41 51-91 15-55 (175)
119 PRK03699 putative transporter; 23.9 5.4E+02 0.012 23.2 12.8 25 186-210 252-276 (394)
120 cd02434 Nodulin-21_like_3 Nodu 23.9 2.5E+02 0.0053 24.6 6.2 41 50-91 14-54 (225)
121 TIGR00893 2A0114 d-galactonate 23.9 4.6E+02 0.01 22.4 13.3 18 188-205 264-281 (399)
122 COG3817 Predicted membrane pro 23.7 1.2E+02 0.0025 28.1 4.0 46 65-149 2-47 (313)
123 PF01988 VIT1: VIT family; In 23.6 2.2E+02 0.0048 24.4 5.7 41 50-91 13-53 (213)
124 PF11700 ATG22: Vacuole efflux 23.3 6.9E+02 0.015 24.2 15.6 50 41-90 198-247 (477)
125 PRK09848 glucuronide transport 23.3 3.7E+02 0.0079 24.8 7.6 30 78-110 415-444 (448)
126 TIGR02718 sider_RhtX_FptX side 22.9 5.5E+02 0.012 22.9 14.3 26 187-212 256-281 (390)
127 PF03591 AzlC: AzlC protein; 22.8 1.5E+02 0.0032 24.0 4.3 48 20-67 94-143 (143)
128 PRK03545 putative arabinose tr 22.7 5.6E+02 0.012 22.9 16.6 39 49-87 143-181 (390)
129 KOG1397 Ca2+/H+ antiporter VCX 22.7 3E+02 0.0064 26.9 6.8 47 156-202 335-386 (441)
130 PF11295 DUF3096: Protein of u 22.2 2.4E+02 0.0052 18.5 4.2 34 190-225 3-36 (39)
131 TIGR02484 CitB CitB domain pro 21.9 7.2E+02 0.016 23.9 10.9 19 175-193 254-272 (372)
132 COG1238 Predicted membrane pro 20.6 5.1E+02 0.011 21.7 7.8 62 6-68 21-82 (161)
133 COG2095 MarC Multiple antibiot 20.4 4.3E+02 0.0093 23.0 6.9 72 21-92 122-197 (203)
134 TIGR00902 2A0127 phenyl propri 20.2 6.4E+02 0.014 22.6 13.4 30 187-216 252-281 (382)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.8e-61 Score=424.04 Aligned_cols=229 Identities=53% Similarity=0.811 Sum_probs=206.3
Q ss_pred CchhHHHHHHHHHHHHHhhcccHHHHHHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Q 027038 1 MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFF 80 (229)
Q Consensus 1 ~~~~~~~f~~sf~~iflaElGDKTql~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl 80 (229)
|++++++|..||+||+++|+||||++++++|||||+|..||.|+..||.+||.|++++|+..++++|++|++++++++|+
T Consensus 62 ~~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~ 141 (294)
T KOG2881|consen 62 ASSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFL 141 (294)
T ss_pred hHHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhc--CCCChhhHHHHHHhhhhhhhhccC--cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhcc
Q 027038 81 GFGLWSLWDAFS--DGGEAEEFEEVEKKLDADFKANAG--ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEW 156 (229)
Q Consensus 81 ~fG~~~L~~~~~--~~~~~~e~~e~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~ 156 (229)
+||+|||+|+++ +++++||.||+|+|++.++.+.+- +...++.-+.+.+++.|+.++.+++|+|+++|.++|++||
T Consensus 142 iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~aEw 221 (294)
T KOG2881|consen 142 IFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFLAEW 221 (294)
T ss_pred HHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHHHHh
Confidence 999999999975 556689999999999887655541 1111111112223456778888899999999999999999
Q ss_pred CchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccccCC
Q 027038 157 GDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 229 (229)
Q Consensus 157 GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~~~ 229 (229)
|||||++|++||++.||++|++|+.+||.+||++||++|+++++||++|++.+++|++|+.||+..++.++++
T Consensus 222 GDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i~~~~~~ 294 (294)
T KOG2881|consen 222 GDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVYIFQGFDA 294 (294)
T ss_pred ccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998874
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.4e-52 Score=349.51 Aligned_cols=185 Identities=35% Similarity=0.572 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 027038 5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL 84 (229)
Q Consensus 5 ~~~f~~sf~~iflaElGDKTql~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~ 84 (229)
++++..|.++|++||+|||||+++++||+||+|++|+.|+..|++.||.+++++|++.++.+|+++.++..+.+|++||+
T Consensus 1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav 80 (190)
T COG2119 1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAV 80 (190)
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHH
Q 027038 85 WSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLAT 164 (229)
Q Consensus 85 ~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlat 164 (229)
|+++|+.+++ +|.+ .+++ +.+|.++|+++|++|||||||++|
T Consensus 81 ~~l~edk~~~---~e~~-----------------------------~~~~------~~~f~~tfi~~FlaE~GDKTQiAT 122 (190)
T COG2119 81 WMLIEDKEDD---EEAQ-----------------------------AASP------RGVFVTTFITFFLAELGDKTQIAT 122 (190)
T ss_pred HHhccccccc---cccc-----------------------------cccc------ccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999873221 1100 0111 368999999999999999999999
Q ss_pred HHHHcccC-CcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027038 165 IGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 165 i~LAa~~~-~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
++||++++ |+.|++|+++||++|+.++|++|+++++|+|+|.++.++|++|+.||+..+|+..
T Consensus 123 IaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~ 186 (190)
T COG2119 123 IALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF 186 (190)
T ss_pred HHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999964 6999999999999999999999999999999999999999999999999888764
No 3
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.92 E-value=1.4e-25 Score=166.96 Aligned_cols=76 Identities=47% Similarity=0.727 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHccc--CCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 027038 144 FLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 219 (229)
Q Consensus 144 f~~af~~~FlaE~GDKTQlati~LAa~~--~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg 219 (229)
|+++|.++|++|||||||++|+.||+|| +|++|++|+.+|++++|++++++|+++.+++|++++++++|++|++||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999 899999999999999999999999999999999999999999999997
No 4
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.91 E-value=1e-24 Score=162.41 Aligned_cols=76 Identities=32% Similarity=0.415 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHccC--CCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 027038 8 FTKSLAMTVLSEIGDKTFFAAAILAMRH--PRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG 83 (229)
Q Consensus 8 f~~sf~~iflaElGDKTql~~~~LA~r~--~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG 83 (229)
|+++|.++|++|+|||||++++.||+|| +++.|++|+.+|+.++|.++|++|+++++++|+++++++++++|++||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999 667899999999999999999999999999999999999999999987
No 5
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.85 E-value=4.1e-21 Score=163.00 Aligned_cols=87 Identities=28% Similarity=0.452 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHccCCC-cEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 027038 5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG 83 (229)
Q Consensus 5 ~~~f~~sf~~iflaElGDKTql~~~~LA~r~~~-~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG 83 (229)
+..|.++|.++|++|+|||||++|+.||++|+. |.|++|+.+|+++|++++|+.|+++++++|++.++.+++++|++||
T Consensus 99 ~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 99 RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999997 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhh
Q 027038 84 LWSLWDAF 91 (229)
Q Consensus 84 ~~~L~~~~ 91 (229)
+..+++..
T Consensus 179 l~~~~~~~ 186 (190)
T COG2119 179 LVLLWQVF 186 (190)
T ss_pred HHHHHHHH
Confidence 99999863
No 6
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.73 E-value=1.6e-18 Score=153.88 Aligned_cols=87 Identities=28% Similarity=0.328 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 027038 5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL 84 (229)
Q Consensus 5 ~~~f~~sf~~iflaElGDKTql~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~ 84 (229)
...|+++|.++|++|||||+|++|+.||++.+++.|++|+.+++.+||.++|+.|++++++|+.+.+.+++|++|++||+
T Consensus 206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl 285 (294)
T KOG2881|consen 206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGL 285 (294)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh
Q 027038 85 WSLWDAF 91 (229)
Q Consensus 85 ~~L~~~~ 91 (229)
..++..+
T Consensus 286 ~~i~~~~ 292 (294)
T KOG2881|consen 286 VYIFQGF 292 (294)
T ss_pred HHHhcCC
Confidence 9998763
No 7
>PRK11469 hypothetical protein; Provisional
Probab=98.23 E-value=2.2e-05 Score=67.37 Aligned_cols=138 Identities=20% Similarity=0.302 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchH
Q 027038 48 LIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDE 127 (229)
Q Consensus 48 l~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~ 127 (229)
..+|+.++-..|+.+.+++|+ +-||+++.+.++.|.||++|++++++++++ +. +
T Consensus 47 q~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~~~~~~~~--~~----~------------------- 100 (188)
T PRK11469 47 ETLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFRGADDEDE--EP----R------------------- 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccccc--cc----c-------------------
Confidence 367888888999999999777 779999999999999999999864322111 00 0
Q ss_pred hhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcc-cCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHH
Q 027038 128 LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD-ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKI 206 (229)
Q Consensus 128 ~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~-~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~ 206 (229)
++ .+. +..+..+..+.. | .--+-+.++.- .+++...+-.-+-..+++..++..|+.+++++ .++
T Consensus 101 -~~--~~~-----~~~l~LaiAtSi-----D-AlavGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~ 165 (188)
T PRK11469 101 -RR--HGF-----WLLVTTAIATSL-----D-AMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKK 165 (188)
T ss_pred -cC--CCH-----HHHHHHHHHHHH-----H-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 00 000 011111111100 0 00011122211 24444444444556677777888888777654 567
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 027038 207 VALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 207 v~~~~g~lFl~fg~~~l~~~ 226 (229)
...++|++.+..|+..+++-
T Consensus 166 a~~lgG~iLI~iGi~il~~h 185 (188)
T PRK11469 166 AEILGGLVLIGIGVQILWTH 185 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998764
No 8
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=98.21 E-value=3.5e-05 Score=66.89 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 027038 45 LGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDG 94 (229)
Q Consensus 45 ~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~ 94 (229)
.....+|+.++..+|+.+.+++|+++-++++++++++.|+||+++.++++
T Consensus 37 g~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 37 AVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455899999999999999999999999999999999999999998643
No 9
>COG4280 Predicted membrane protein [Function unknown]
Probab=98.18 E-value=3.4e-05 Score=67.12 Aligned_cols=163 Identities=24% Similarity=0.331 Sum_probs=110.5
Q ss_pred CCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhc------CCCChhhHHHHHHhhh
Q 027038 35 HPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS------DGGEAEEFEEVEKKLD 108 (229)
Q Consensus 35 ~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~------~~~~~~e~~e~e~~~~ 108 (229)
++.+.-+.|+.+++++.-.++..+|+.+ +++|.+++++++|++.+.||-.-.|...+ ..++||. .||.+.
T Consensus 31 ~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~---leE~~~ 106 (236)
T COG4280 31 YKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEK---LEEGIV 106 (236)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhh---Hhhhhh
Confidence 3445689999999999999999999999 89999999999999999999999987643 1123222 223332
Q ss_pred hhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHccc-CCcEeehHHHHHHHHH
Q 027038 109 ADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE-NPFGVVLGGIIGQALC 187 (229)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~-~~~~V~~G~~~a~~l~ 187 (229)
.|.++.+ +. +-.+..+|-...+ | |=.--+..++|.+.+ .+..-..|+..|..+.
T Consensus 107 ldq~e~g--------------------~~---~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlv 161 (236)
T COG4280 107 LDQEEEG--------------------FS---KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLV 161 (236)
T ss_pred ccccccc--------------------ch---hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHH
Confidence 2221110 00 1123333332221 1 111223445555444 3445667888888888
Q ss_pred HHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027038 188 TTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 188 t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
-.++..+-+.++ |+|+..++..+|.+...||.+-+-+++
T Consensus 162 lvl~~~lh~pla-rvpe~~lKfvag~lL~sfGtfWlgegv 200 (236)
T COG4280 162 LVLTAILHSPLA-RVPEPHLKFVAGALLFSFGTFWLGEGV 200 (236)
T ss_pred HHHHHHhccHHh-hCCchhHHHHHHHHHHHhhHHHhcccc
Confidence 888888888884 699999999999999999998776653
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=98.06 E-value=0.00026 Score=59.25 Aligned_cols=169 Identities=17% Similarity=0.183 Sum_probs=98.6
Q ss_pred HHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHHHHHHHHhhhhhcCCCChhhH
Q 027038 26 FAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEF 100 (229)
Q Consensus 26 l~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~--~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~ 100 (229)
+..+--+.+++++ .+.+|...+-.+...+++..-..+.+..|. .++++++++.++.+|.+++++..+.++++++.
T Consensus 12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~ 91 (191)
T PF01810_consen 12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSSTQSE 91 (191)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhh
Confidence 4455566677654 488899999999888888877777554443 46899999999999999999875543211111
Q ss_pred HHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhH---HHHHHHHHHHhhccCchHHHHHHHHHcccCCcEee
Q 027038 101 EEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSP---IFLKAFSITFFGEWGDKSQLATIGLAADENPFGVV 177 (229)
Q Consensus 101 ~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~ 177 (229)
.+ + ++. .+.-.+...-...|| .|..++...|+.+--+.+|...+.+. ++
T Consensus 92 ~~-----~--~~~--------------~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 143 (191)
T PF01810_consen 92 AK-----K--QSK--------------SKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFILG-------IF 143 (191)
T ss_pred hc-----c--ccH--------------HHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHHH-------HH
Confidence 00 0 000 000001111111222 45556565666653444444444332 23
Q ss_pred hHHHHHHHHHHHHHHHHhHHhhhhcCH---HHHHHHHHHHHHHHHHHHhccc
Q 027038 178 LGGIIGQALCTTAAVIGGKSLASQISE---KIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 178 ~G~~~a~~l~t~lav~~G~~l~~~i~~---~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
.|+..-+...... ++.+.+++.. +++++++|++++.+|++.++++
T Consensus 144 ~~~~~w~~~~~~~----~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 144 LGSLLWFLLLALL----GSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444443 4444444433 3889999999999999998864
No 11
>COG1971 Predicted membrane protein [Function unknown]
Probab=97.85 E-value=0.00043 Score=59.70 Aligned_cols=44 Identities=25% Similarity=0.536 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 027038 50 VMTILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAFSD 93 (229)
Q Consensus 50 l~t~lav~~G~~l~~~lp---~~~v~~~a~~lFl~fG~~~L~~~~~~ 93 (229)
+.+.+.-++|.++.+++| ..+-||+++++..+.|+||+++++++
T Consensus 45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~ 91 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN 91 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344555556666665555 67889999999999999999999876
No 12
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=97.45 E-value=0.00084 Score=58.00 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=93.5
Q ss_pred CcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccC
Q 027038 37 RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAG 116 (229)
Q Consensus 37 ~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~ 116 (229)
++.|.+|=.++..+.-..|...+..+ ..+|++|+--.-|.+=+.+|++.++.+. +||++|.+++.+
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l-~~ip~~wiLGlLGliPI~lGi~~l~~~~-----~~~e~~~~~~~~-------- 90 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASLLGAFGL-LFIPPEWILGLLGLIPIYLGIKALFSGE-----DDDEEEAEEKLN-------- 90 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHcCC-----Cccccccccccc--------
Confidence 57899999999999999998888886 5999999988889999999999887541 111112221111
Q ss_pred cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhH
Q 027038 117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 196 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~ 196 (229)
+++.+ +.+ -+...+.+|-=||+==+=+=.+|+.. +.=+.-...-..++.++-+.+++
T Consensus 91 ------------~~~~~--------~~i-~~Va~iTiAnGgDNigIYiP~Fa~~s--~~~l~v~l~vF~ilv~v~c~la~ 147 (191)
T PF03596_consen 91 ------------SPKSN--------SLI-LTVAAITIANGGDNIGIYIPLFASLS--LAELIVILIVFLILVGVWCFLAY 147 (191)
T ss_pred ------------ccccc--------chh-HHhhhhhhhcCCCeEEEeehhhhcCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001 111 22222333335554222222222211 11122233445566677777888
Q ss_pred Hhhhhc-----CHHHHHHHHHHHHHHHHHHHhccc
Q 027038 197 SLASQI-----SEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 197 ~l~~~i-----~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
.++++- =+|+=+++.-++|++.|++.++++
T Consensus 148 ~l~~~p~i~~~leryg~~l~p~v~I~LGi~Il~es 182 (191)
T PF03596_consen 148 KLARIPIIAEFLERYGRWLVPIVYIGLGIYILIES 182 (191)
T ss_pred HHhCChHHHHHHHHhcccHHHHHHHHhCceeeEeC
Confidence 876543 267778999999999999988874
No 13
>PRK10229 threonine efflux system; Provisional
Probab=96.82 E-value=0.11 Score=44.25 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=53.2
Q ss_pred HHHhhcccHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHHHHHHHHhhh
Q 027038 15 TVLSEIGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWD 89 (229)
Q Consensus 15 iflaElGDKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~--~~v~~~a~~lFl~fG~~~L~~ 89 (229)
+...-.|. ..+.++--+.+++++ ...+|...|..+...+++..-..+.+..|. +.+++++++-.+.+|..++++
T Consensus 14 ~~~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~ 92 (206)
T PRK10229 14 VALMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRG 92 (206)
T ss_pred HHhcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455 666677777777654 477888888888888877766666666663 357777777777899999886
Q ss_pred hh
Q 027038 90 AF 91 (229)
Q Consensus 90 ~~ 91 (229)
..
T Consensus 93 ~~ 94 (206)
T PRK10229 93 AL 94 (206)
T ss_pred cc
Confidence 53
No 14
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=96.81 E-value=0.035 Score=46.20 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=45.1
Q ss_pred HHHHHccCCC---cEeehHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHHHHHHHHhhhh
Q 027038 28 AAILAMRHPR---RLVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 28 ~~~LA~r~~~---~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~--~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
++.-+.++++ ..+.+|..++..+...+++..-..+-+..|. .++++++++-.+.+|..++++.
T Consensus 9 ~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 9 VMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344445543 3588899999999988888765555566664 5678888887788999988854
No 15
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=96.74 E-value=0.12 Score=44.21 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=99.6
Q ss_pred ccHHHHHHHHHHc---cCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCCh
Q 027038 21 GDKTFFAAAILAM---RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA 97 (229)
Q Consensus 21 GDKTql~~~~LA~---r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~ 97 (229)
+|+-.+++++... +++++..+.|...|.++=.++-.. |.++-+.. .+++++.|+..+..|..++++..+.|
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~-~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~~~~~d--- 85 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFL-ASWLLSIF--PWILLIGGLFLLYIAIKLLHEERDED--- 85 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 5666665554433 234568999999999665555444 44443432 67888888888888888887754111
Q ss_pred hhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCch-----HHHHHHHHHcccC
Q 027038 98 EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-----SQLATIGLAADEN 172 (229)
Q Consensus 98 ~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDK-----TQlati~LAa~~~ 172 (229)
+|+++.++ .+ + ..+.+ .+.++.+.. .-|.=|= |=+++++++ .+
T Consensus 86 ~~~~~~~~-~~----~----------------~~~~~------~~~~~~~v~---~I~~~DlvfSlDSV~a~~~it--~~ 133 (183)
T PF03741_consen 86 PENAEVEE-EK----K----------------FFPVS------KSSLWLAVI---QIELADLVFSLDSVLAAVGIT--DD 133 (183)
T ss_pred cchhhhhh-hh----c----------------cccch------hHHHHHHHH---HHHHHHHHHHHhHHHHHHHHh--hh
Confidence 11111110 00 0 00000 011233322 2233343 345566665 67
Q ss_pred CcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027038 173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 224 (229)
Q Consensus 173 ~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~ 224 (229)
++.++.|...+....-..+-.+.+++.++ .++++.++.+-...|+.++.
T Consensus 134 ~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~ 182 (183)
T PF03741_consen 134 FFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLIL 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999998764 67788888877777877654
No 16
>COG0730 Predicted permeases [General function prediction only]
Probab=96.50 E-value=0.097 Score=46.01 Aligned_cols=174 Identities=17% Similarity=0.043 Sum_probs=101.1
Q ss_pred CcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccC
Q 027038 37 RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAG 116 (229)
Q Consensus 37 ~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~ 116 (229)
+..+-.-...-+...+.+++.+|.++...+|.++.+..-+.+.+..++++++...+..+ +++.++. ..... .-
T Consensus 68 ~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~---~~~~~-~~-- 140 (258)
T COG0730 68 RGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKA-EDRAARL---RPLLF-AL-- 140 (258)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccc---Ccchh-HH--
Confidence 34577788888888889999999999999999999999999999999999987532100 0100000 00000 00
Q ss_pred cccCCCCCchHhhhhccchhhhhhh--HHHHHHHHHHHhhccCchHHHHHHHHHc---------ccC--CcEeehHHHHH
Q 027038 117 ATKEGSKADDELKKQRRPFLLQFFS--PIFLKAFSITFFGEWGDKSQLATIGLAA---------DEN--PFGVVLGGIIG 183 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~~af~~~FlaE~GDKTQlati~LAa---------~~~--~~~V~~G~~~a 183 (229)
...-.-.-...+..+. ..+...-.+..+....+|--.+|-.... .|. .-.+-......
T Consensus 141 ---------~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 211 (258)
T COG0730 141 ---------ALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALL 211 (258)
T ss_pred ---------HHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 0000000000000000 0122222333444444443322221110 011 11111222227
Q ss_pred HHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 184 QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 184 ~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
+.+.+.++...|..+.+++|++.++++-+.+.+..++.++++.
T Consensus 212 l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~ 254 (258)
T COG0730 212 LAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRG 254 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999887654
No 17
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=96.38 E-value=0.1 Score=45.16 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=92.7
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHHHHHHhhhhhcCCC-ChhhHHHHHHhhhhhhhhccC
Q 027038 40 VLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGG-EAEEFEEVEKKLDADFKANAG 116 (229)
Q Consensus 40 V~~G~~~Al~l~t~lav~~G~~l~~~--lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~-~~~e~~e~e~~~~~~~~~~~~ 116 (229)
..-.+..+++ .-.+..++|+++-++ ++..-.++.+|++.+..|+.|+....+.++ .++|.+|.+ +. .
T Consensus 40 a~~a~~~a~~-ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~~------~~---~ 109 (203)
T PF01914_consen 40 ARRASIIAFI-ILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSPSSEKSSPDEKEEAK------DA---E 109 (203)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhhhhc------cc---c
Confidence 3334444444 445566778877664 578889999999999999999986643311 111111000 00 0
Q ss_pred cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCC---cEeehHHHHHHHHHHHHHHH
Q 027038 117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVI 193 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~---~~V~~G~~~a~~l~t~lav~ 193 (229)
+. . +.| +.+--=-|.-|=-+++.++++++. ..+..++.....+.+.+.-.
T Consensus 110 ~~------------a--------i~P-------La~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~ 162 (203)
T PF01914_consen 110 DI------------A--------IVP-------LAIPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILR 162 (203)
T ss_pred cc------------e--------ecc-------cchhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 011 011111244455555666666543 34556677777777888888
Q ss_pred HhHHhhhhcCH---HHHHHHHHHHHHHHHHHHhcccc
Q 027038 194 GGKSLASQISE---KIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 194 ~G~~l~~~i~~---~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
.++++.+++.+ +.+.++.|++-...|+-+..++.
T Consensus 163 ~a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~Gl 199 (203)
T PF01914_consen 163 FADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSGL 199 (203)
T ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888865 46788999999999998887764
No 18
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=96.14 E-value=0.19 Score=46.43 Aligned_cols=196 Identities=16% Similarity=0.164 Sum_probs=104.6
Q ss_pred HHHHHHHHhhc---ccHHHHHHHHHHcc-----CCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Q 027038 10 KSLAMTVLSEI---GDKTFFAAAILAMR-----HPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFG 81 (229)
Q Consensus 10 ~sf~~iflaEl---GDKTql~~~~LA~r-----~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~ 81 (229)
..|....+-|. +|+-+..+++++.+ ++++..+.|...|+++=.++ +.+|.++-+.. .++.++.|+..+.
T Consensus 63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~-i~~g~~Li~~f--~wi~~ifG~fLi~ 139 (302)
T TIGR03718 63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIF-IALGAALIEQF--HWVLYIFGAFLLY 139 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 34555555564 89999999988763 33467999999998765554 44555554332 4577777777767
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHh-hhhccchhhhhhhHHHHHHHHHHHhhccCchH
Q 027038 82 FGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDEL-KKQRRPFLLQFFSPIFLKAFSITFFGEWGDKS 160 (229)
Q Consensus 82 fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKT 160 (229)
-|.+++++..+ ++|.|++..-+-+. +-- |.++....+.- .+..++. ...| +..+ +..-|.=|=.
T Consensus 140 ~a~k~~~~~~~--~~~~~~~~~~~~~~----~~~--~v~~~~~g~~f~~~~~g~~---~~tp-l~~v---li~Ie~~Dlv 204 (302)
T TIGR03718 140 TGIKMLFEGDE--EDDPENNPLVRLLR----RVL--PVTDKYHGDRFFVRENGKR---YATP-LFLV---LVLVETTDLI 204 (302)
T ss_pred HHHHHHhhccc--ccCccccHHHHHHH----hhc--CCCccccCCceeeeecCce---ecCc-HHHH---HHHHHHHHHH
Confidence 77776664311 00011000000000 000 00000000000 0000000 0112 2233 3334555543
Q ss_pred HH---HHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 161 QL---ATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 161 Ql---ati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
.= .....|..++|+.|+.+...|....-.+--++.+++.+. .++++.++++-...|+.++.+.
T Consensus 205 FslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf---~~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 205 FAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERF---HYLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhh
Confidence 31 122333446799999999988877666666677777553 5788888888888888887763
No 19
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=96.08 E-value=0.34 Score=44.23 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=87.0
Q ss_pred CcEeehHHHHHHHHHHHHHHHHHhhhhcccc---HH----HHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhh
Q 027038 37 RRLVLSGCLGALIVMTILSAVVGWVAPNLIS---RK----LTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDA 109 (229)
Q Consensus 37 ~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp---~~----~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~ 109 (229)
+++|+.|+..|++++-++++++-......-. ++ .+.+++.++...+++||.+.+. +=.++.|++.++
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~~~~~------~~~~~i~~~~~~ 111 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRMQR------KWRVKIERQLVQ 111 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3589999999999998888877665443322 33 3678888888999999996441 112233333321
Q ss_pred hhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHH
Q 027038 110 DFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTT 189 (229)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~ 189 (229)
.- ++.++. +..+..+|..++ =| |=-|=+--.+.+...+...+..|..+|.++...
T Consensus 112 al------------------~~~~~~-----~al~~l~flaV~-RE-G~EtVlF~~g~~~~~~~~~~~gg~~~Gl~~~~~ 166 (283)
T TIGR00145 112 AL------------------KRKRSG-----WAIALIAFIAVV-RE-GLETVLFLAGFQQGSHATAYIGPAVAGLIVAVV 166 (283)
T ss_pred HH------------------hcCcch-----hHHHHHHHHHHH-Hh-hhHHHHhHHHHhcCCCchhHHHHHHHHHHHHHH
Confidence 11 000011 244555555332 00 111111111111112222223357777777766
Q ss_pred HHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027038 190 AAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 224 (229)
Q Consensus 190 lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~ 224 (229)
++.+.=+. ..|+|.|..-.+.+++-++++.-++-
T Consensus 167 ~g~li~~~-~~~i~l~~FF~~t~~lL~llAagl~~ 200 (283)
T TIGR00145 167 VGVLLYRG-GSRLSLKIFFILSSSLLLFIAAGLLG 200 (283)
T ss_pred HHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66665444 47899999988888877777665554
No 20
>PRK10958 leucine export protein LeuE; Provisional
Probab=96.06 E-value=0.82 Score=39.38 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=46.6
Q ss_pred HhhcccHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhhhh
Q 027038 17 LSEIGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 17 laElGDKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
..--|...- ..+.-+.+++++ ...+|..++..+...+++..-..+.+..|.- .+++++++-.+.+|.+.+++..
T Consensus 21 ~~sPGP~~~-~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~~ 99 (212)
T PRK10958 21 VLLPGPNSL-YVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAAL 99 (212)
T ss_pred hcCCchHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334454443 334445555543 4777888888888777775444444444432 4677777777889999998763
No 21
>PRK09304 arginine exporter protein; Provisional
Probab=95.94 E-value=0.53 Score=40.33 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=45.8
Q ss_pred HHHhhcccHHHHHHHHHHccCCC-cEeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhhh
Q 027038 15 TVLSEIGDKTFFAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 15 iflaElGDKTql~~~~LA~r~~~-~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~~~ 90 (229)
.+.+-.|.- .+..+.-+.++++ .....|...+..+...+++..-..+-...|.- .+++++++-.+.+|..++++.
T Consensus 14 ~~~~tPGP~-~~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 14 AMILPLGPQ-NAFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHhccChH-HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444543 3333444555543 24777888888887777666555554444443 467777777777999999875
No 22
>PRK10621 hypothetical protein; Provisional
Probab=95.91 E-value=0.5 Score=42.00 Aligned_cols=166 Identities=15% Similarity=0.090 Sum_probs=93.1
Q ss_pred cEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhh-ccC
Q 027038 38 RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKA-NAG 116 (229)
Q Consensus 38 ~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~-~~~ 116 (229)
..+=.-...-+.+.+.+.+..|.++.+.+|+++.+++.+++.+..++++++...++++ ++.++ ....... ..+
T Consensus 73 ~~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~~~~~~~--~~~~~----~~~~~~~~~~G 146 (266)
T PRK10621 73 KVVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLMPKLGEE--DRQRR----LYGLPFALIAG 146 (266)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCccccc--ccccc----ccchHHHHHHH
Confidence 4566777777888899999999999999999999999999888899988764321110 00000 0000000 000
Q ss_pred cccCCCCCchHhhhhccchhhhhhh--HHHHHHHHHHHhhccCchHHHHHH-------------HHHcccCCcEeehHHH
Q 027038 117 ATKEGSKADDELKKQRRPFLLQFFS--PIFLKAFSITFFGEWGDKSQLATI-------------GLAADENPFGVVLGGI 181 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~~af~~~FlaE~GDKTQlati-------------~LAa~~~~~~V~~G~~ 181 (229)
-.....+.++. ..+.....+..+..+.-|...+|. ....... +-.-..
T Consensus 147 --------------~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~---v~~~~~ 209 (266)
T PRK10621 147 --------------GCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGK---VIWATG 209 (266)
T ss_pred --------------HHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe---ehHHHH
Confidence 00000000000 001111111122222222211111 1111111 111223
Q ss_pred HHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 182 IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 182 ~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
+.+...+.++...|..+.+++|++.++++...+-+..|+.+++..
T Consensus 210 l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~ 254 (266)
T PRK10621 210 FVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDS 254 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHH
Confidence 446677889999999999999999999999999999998887654
No 23
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.022 Score=49.10 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=54.7
Q ss_pred HHHhhcccHHHHHHHHHHccC---CCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 15 TVLSEIGDKTFFAAAILAMRH---PRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 15 iflaElGDKTql~~~~LA~r~---~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
++.|-==|--=+..+.+|.+. +++.+.+|=.++....-+.|..+ .+..+++|++|+--.-|..=++.|+|.++.+
T Consensus 11 ly~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~-a~v~~fvp~e~I~glLGLIPi~LGik~l~~~ 88 (205)
T COG4300 11 LYIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLF-AFVLNFVPEEWILGLLGLIPIYLGIKVLILG 88 (205)
T ss_pred HHHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHH-HHHHhhCcHHHHHHHHhHHHHHHhhHHhhcc
Confidence 344444455556666666654 23569999999887776655544 4466899999999899999999999999865
No 24
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=95.79 E-value=0.12 Score=45.46 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHH---ccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCCh
Q 027038 21 GDKTFFAAAILA---MRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA 97 (229)
Q Consensus 21 GDKTql~~~~LA---~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~ 97 (229)
+|+-.+++++.. .+++++..+.|...|.++=-++-......+ + ..+++++.|+..+.-|..++++..+ +
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~---~~~l~~iGG~~Ll~~~~k~l~~~~~----~ 80 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-K---FWWIKAIGALYLLYLAIKHFRKKKK----G 80 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHhccc----c
Confidence 466665555433 223346799999999887766655544444 3 2377777777777777777765311 1
Q ss_pred hhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCch-----HHHHHHHHHcccC
Q 027038 98 EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-----SQLATIGLAADEN 172 (229)
Q Consensus 98 ~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDK-----TQlati~LAa~~~ 172 (229)
+|.+|.+ . ++. . +.|+.+. ..-|.=|= +=++.++++ .+
T Consensus 81 ~~~~~~~--------~---------------~~~-~--------~~f~~av---~~I~~~DlvFSlDSV~A~~git--~~ 123 (215)
T TIGR03716 81 KEDEEAE--------K---------------KKA-H--------SGFWRTV---LKVELMDIAFSVDSILAAVALS--GQ 123 (215)
T ss_pred ccccccc--------c---------------ccc-c--------chHHHHH---HHHHHHHHHHHhhhHHHHHHhc--cC
Confidence 1100000 0 000 0 1122222 22233343 234444443 67
Q ss_pred CcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 173 ~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
|+.++.|...+....-..+-.+.+++.++ .++++.+...-...|+.++.++
T Consensus 124 ~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~ 174 (215)
T TIGR03716 124 FWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLET 174 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988888888888664 5778888888888888887753
No 25
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=95.74 E-value=0.67 Score=39.38 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=50.4
Q ss_pred HHHHhhcccHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhh
Q 027038 14 MTVLSEIGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLW 88 (229)
Q Consensus 14 ~iflaElGDKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~ 88 (229)
++...--|. ..+..+.-+.+++++ ...+|...+..+...+++..-..+.+..|.- .+++++++-.+.+|.++++
T Consensus 14 ~~~~~sPGP-~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~ 92 (205)
T PRK10520 14 IILSLSPGS-GAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWR 92 (205)
T ss_pred HHHhcCCch-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444 344555556666543 4778999999998888776665554544543 4677777777889999998
Q ss_pred hh
Q 027038 89 DA 90 (229)
Q Consensus 89 ~~ 90 (229)
..
T Consensus 93 s~ 94 (205)
T PRK10520 93 AA 94 (205)
T ss_pred CC
Confidence 64
No 26
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=95.72 E-value=0.69 Score=42.35 Aligned_cols=168 Identities=22% Similarity=0.253 Sum_probs=97.2
Q ss_pred CcEeehHHHHHHHHHHHHHHHHHhhhhccccH-----------HHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 027038 37 RRLVLSGCLGALIVMTILSAVVGWVAPNLISR-----------KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEK 105 (229)
Q Consensus 37 ~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~-----------~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~ 105 (229)
+++|+.|+..+++.+-.+++.+-..... ++. ..+..++.++-....+||.+...+.+ +|.|+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~-~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~~~------~~~~~ 107 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFYT-LSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRKMK------GEWED 107 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------hhHHH
Confidence 4789999999999999988887766543 332 23567777777788889887532211 12222
Q ss_pred hhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHccc--CCcEeehHHHHH
Q 027038 106 KLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIG 183 (229)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~--~~~~V~~G~~~a 183 (229)
++++.-+...++.+.. + .....++ .+..|..+|.. .+=| |=-|=+--.++.+.. +...+..|...|
T Consensus 108 ~~~~~~~~~~~~~~~~----~-~~~~~~~-----~~~l~~~afl~-vlRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G 175 (306)
T PF03239_consen 108 KLAKALSSGSEDARAS----Q-KDEGGGS-----KWALFLLAFLI-VLRE-GLEAVLFLAALAASLRKDAASILLGAILG 175 (306)
T ss_pred HHHHHHhhccchhhhh----h-hccccch-----hhHHHHHHHHH-HHHh-hHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222111110000000 0 0000011 13566667653 2323 444444455555443 357788899999
Q ss_pred HHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027038 184 QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 224 (229)
Q Consensus 184 ~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~ 224 (229)
.++...++.++-+.. .++|.+..-.+.+++-++.+..++.
T Consensus 176 ~~~a~~~~~~~~~~~-~~i~~~~~f~~~~~~ll~~aa~L~~ 215 (306)
T PF03239_consen 176 IAAAVVLGWLLYRGL-IRISLRSFFIITGVLLLLIAAGLLG 215 (306)
T ss_pred HHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence 999888888886654 5689888877777755555544443
No 27
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=95.56 E-value=1.4 Score=38.04 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=45.3
Q ss_pred cccHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHH-Hhhhhcccc--HHHHHHHHHHHHHHHHHHHhhhh
Q 027038 20 IGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVV-GWVAPNLIS--RKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 20 lGDKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~-G~~l~~~lp--~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
-|.- .+..+.-+++++++ .+-+|..++..+...+++.. +..+ ..-| ...++++++.-.+.+|..+++..
T Consensus 20 PGP~-~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all-~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 20 PGPD-NLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALL-ATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred CCcc-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4443 34445556666553 58888888888777776653 2333 2222 23578888888889999999876
No 28
>PRK10995 inner membrane protein; Provisional
Probab=95.38 E-value=0.16 Score=44.39 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=37.0
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHHHHHHHhhhhhc
Q 027038 40 VLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAFS 92 (229)
Q Consensus 40 V~~G~~~Al~l~t~lav~~G~~l~~~l--p~~~v~~~a~~lFl~fG~~~L~~~~~ 92 (229)
..-.+..+.+++ .+..+.|..+-+++ +....++.+|++.+.+|+.|+++..+
T Consensus 44 a~~~~~~a~~il-l~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~~~ 97 (221)
T PRK10995 44 ALMASVYVFAIM-MVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQQK 97 (221)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444444 46677777776654 66789999999999999999986543
No 29
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=95.24 E-value=0.6 Score=39.97 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=42.5
Q ss_pred ehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 41 ~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
-.=...-+.+...+.+.+|.++...+|+++++...++.-+.++.++++..
T Consensus 62 ~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~ 111 (240)
T PF01925_consen 62 DWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK 111 (240)
T ss_pred chhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455566778888999999999999999999999999999999998854
No 30
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=94.95 E-value=2 Score=36.43 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhhh
Q 027038 22 DKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 22 DKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~~~ 90 (229)
.=+.+..+.-+.+++++ ....|...+..+...+++.....+.+..|.- .+++++++-.+..|.++++..
T Consensus 21 GP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 21 GPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP 94 (195)
T ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555666666643 5889999999998777765444554444433 456666666677999998763
No 31
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=94.11 E-value=0.07 Score=46.34 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=45.6
Q ss_pred cEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027038 174 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 174 ~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
+...+-...-+.+++.++..+|+.+.+.+|+++-+++++++++..|++++++++
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566899999999999999999999999999999999999998874
No 32
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=93.95 E-value=2.6 Score=35.83 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=94.6
Q ss_pred ccHHHHHHHHHHccCCC----cEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 027038 21 GDKTFFAAAILAMRHPR----RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGE 96 (229)
Q Consensus 21 GDKTql~~~~LA~r~~~----~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~ 96 (229)
+|+-.++++ .+.+.++ +....|...|+++..+........+ + ..+.++.+|+..+..|..++++..+
T Consensus 14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll-~---~~~~~iaGGllLl~ia~~ml~~~~~---- 84 (176)
T TIGR03717 14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLL-A---IPFLKLIGGLLLLWIGWKLLLEEEE---- 84 (176)
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hHHHHHHHHHHHHHHHHHHHhcccc----
Confidence 788887777 3444433 5689999999988877766655444 4 3788999999999999999875311
Q ss_pred hhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchH-----HHHHHHHHccc
Q 027038 97 AEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKS-----QLATIGLAADE 171 (229)
Q Consensus 97 ~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKT-----Qlati~LAa~~ 171 (229)
+++. + .+..++ |+.+... -|.=|=. =++.++.+ +.
T Consensus 85 ~~~~---~------------------------~~~~~~---------~~~~v~~---I~~~D~~fS~DsV~a~~~~~-~~ 124 (176)
T TIGR03717 85 EQGG---D------------------------VKGSTT---------LWAAIKT---IVIADAVMSLDNVLAVAGAA-HG 124 (176)
T ss_pred cccc---c------------------------ccccCc---------HHHHHHH---HHHHHHHHHHHHHHHHHHHh-cC
Confidence 0000 0 000011 2222221 2222322 22333333 34
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027038 172 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 224 (229)
Q Consensus 172 ~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~ 224 (229)
+.+.++.|..++..+.-..+-++.+++.++ .++++.+...-...|+.+++
T Consensus 125 ~~~li~~g~~i~i~~m~~~s~~~~~~~~~~---p~l~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 125 HLGLLIFGLLLSIPIIVWGSTLILKLMDRF---PWIIYIGAALLGYVAGEMIV 174 (176)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 667788898888888888787777777653 57777777777777877765
No 33
>PRK11111 hypothetical protein; Provisional
Probab=93.20 E-value=0.26 Score=43.19 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=81.9
Q ss_pred EeehHHHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHHHHHHHhhhhhcCC-CChhhHHHHHHhhhhhhhhcc
Q 027038 39 LVLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAFSDG-GEAEEFEEVEKKLDADFKANA 115 (229)
Q Consensus 39 ~V~~G~~~Al~l~t~lav~~G~~l~~~l--p~~~v~~~a~~lFl~fG~~~L~~~~~~~-~~~~e~~e~e~~~~~~~~~~~ 115 (229)
..+-.+..+.+++- +..++|+++-++. +..-.++.+|++.+.+|+.|++...++. ++++|.+|.+ ++++
T Consensus 45 ia~~a~l~a~~ill-~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~~~~~~~~~~~~~~~~------~~~~- 116 (214)
T PRK11111 45 TNLTANLSVAIILL-ISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETA------VRES- 116 (214)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccccc------cccc-
Confidence 45555555555554 6688899887754 7778999999999999999997542211 1111110000 0000
Q ss_pred CcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcE---eehHHHHHHHHHHHHHH
Q 027038 116 GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFG---VVLGGIIGQALCTTAAV 192 (229)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~---V~~G~~~a~~l~t~lav 192 (229)
. . +.| . .+--=-|.-|--+++.++++++.+. ....+.+...+.+.+.-
T Consensus 117 ---i-----------a--------ivP-L------a~PllaGPGaIttvI~l~~~~~~~~~~~~~~~ai~~~~~~~~l~l 167 (214)
T PRK11111 117 ---I-----------G--------VVP-L------ALPLMAGPGAISSTIVWGTRYHSWSNLLGFSVAIALFALCCWLLF 167 (214)
T ss_pred ---e-----------e--------eec-c------ccccccCcHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 000 0 0000012222233334444332111 12233444444555555
Q ss_pred HHhHHhhhhcC---HHHHHHHHHHHHHHHHHHHhcccc
Q 027038 193 IGGKSLASQIS---EKIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 193 ~~G~~l~~~i~---~~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
..+.++.+++. .+.+.++.|++-..+|+-+..+++
T Consensus 168 ~~s~~i~r~LG~~G~~vi~RimGliL~aiaVq~i~~Gi 205 (214)
T PRK11111 168 RMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGI 205 (214)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777665 457789999999999998877664
No 34
>TIGR00948 2a75 L-lysine exporter.
Probab=93.15 E-value=2.9 Score=34.64 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=44.3
Q ss_pred HHHHccCCC-cEeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhhhh
Q 027038 29 AILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 29 ~~LA~r~~~-~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
+.-+.|+++ ....+|...+..+...++++.-..+.+..|.- .+++++++-.+.+|..++++..
T Consensus 13 i~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 13 LRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444 35888999999888887777666665555543 4677777777889999998764
No 35
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=93.05 E-value=4.1 Score=37.26 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=48.0
Q ss_pred HHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhc--CHHHHH---HHHHHHHHHHHHHHhc
Q 027038 150 ITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQI--SEKIVA---LSGGVLFIVFGIQSFL 224 (229)
Q Consensus 150 ~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i--~~~~v~---~~~g~lFl~fg~~~l~ 224 (229)
+.|..-+|+=+.=....++. -+|..+.+.....+++...+...++. ..++++ ++++++=+++|+++.|
T Consensus 199 LL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~ 271 (279)
T PRK10019 199 LLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGV 271 (279)
T ss_pred HHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444332 26888888888888766677666666 456666 9999999999999887
Q ss_pred cc
Q 027038 225 SP 226 (229)
Q Consensus 225 ~~ 226 (229)
..
T Consensus 272 ~~ 273 (279)
T PRK10019 272 HG 273 (279)
T ss_pred HH
Confidence 64
No 36
>PRK10739 putative antibiotic transporter; Provisional
Probab=92.87 E-value=2.4 Score=36.71 Aligned_cols=148 Identities=11% Similarity=0.166 Sum_probs=80.0
Q ss_pred EeehHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccC
Q 027038 39 LVLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAG 116 (229)
Q Consensus 39 ~V~~G~~~Al~l~t~lav~~G~~l~~~--lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~ 116 (229)
...-.+..+..++ .+..++|+.+-++ ++..-.++.+|++.+.+|+.|+++..++++ +| .+ ++ + +..=
T Consensus 39 ia~~a~~~a~~il-l~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~~~~~~--~~---~~---~~-~-~~av 107 (197)
T PRK10739 39 IMIRELLIALLVM-LVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPSAEGNS--SG---LP---AG-E-EPFL 107 (197)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcccc--cc---cc---cc-c-Ccee
Confidence 3444455555444 4677788877775 477889999999999999999965421110 00 00 00 0 0000
Q ss_pred cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhH
Q 027038 117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 196 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~ 196 (229)
-|. .-|. ...|.-.++ ++..-.|.+++ ......+.+...+.+.+.-..++
T Consensus 108 vPL------------a~Pl---laGPGaItt-vi~l~~~~~~~--------------~~~~~~ai~~~~~~~~l~l~~s~ 157 (197)
T PRK10739 108 VPL------------AIPL---VAGPSILAT-LMLLSHQYPNQ--------------MGHLVIALLIAWGGTFVILLQSS 157 (197)
T ss_pred eec------------cccc---ccCcHHHHH-HHHHHhhccch--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 011222222 22333332211 11122334444455666666677
Q ss_pred HhhhhcCH---HHHHHHHHHHHHHHHHHHhcccc
Q 027038 197 SLASQISE---KIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 197 ~l~~~i~~---~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
.+.+++.+ +.+.++.|++-...|+-+..++.
T Consensus 158 ~i~~~LG~~g~~vi~RimGllLaaiavq~i~~Gi 191 (197)
T PRK10739 158 LFLRLLGEKGVNALERLMGLILVMLSTQMFLDGI 191 (197)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777754 57788999999999998887764
No 37
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=92.72 E-value=0.43 Score=41.44 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=46.4
Q ss_pred cCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhh
Q 027038 34 RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (229)
Q Consensus 34 r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~ 89 (229)
|++++.|.+|-.++....-..|+..+..+ ..+|++|+--.-|.+=+++|+|-+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHhc
Confidence 56778999999999988888888765554 69999999778888889999998876
No 38
>COG4280 Predicted membrane protein [Function unknown]
Probab=92.64 E-value=0.22 Score=43.75 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHcc--cCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 027038 142 PIFLKAFSITFFGEWGDKSQLATIGLAAD--ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 219 (229)
Q Consensus 142 ~~f~~af~~~FlaE~GDKTQlati~LAa~--~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg 219 (229)
.+|+.+|...++ | -+-.-+++.+-. +++..-+.|+.+|+++.-.++..+|+.+ ..+|..++++++|++.+.||
T Consensus 4 si~lAAl~sSlv-E---lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG 78 (236)
T COG4280 4 SIFLAALGSSLV-E---LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFG 78 (236)
T ss_pred HHHHHHHHHHHH-H---HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHH
Confidence 445555543222 2 245567777743 5667789999999999999999999999 57999999999999999999
Q ss_pred HHHhcccc
Q 027038 220 IQSFLSPV 227 (229)
Q Consensus 220 ~~~l~~~~ 227 (229)
-.-.++++
T Consensus 79 ~rw~Rsav 86 (236)
T COG4280 79 YRWIRSAV 86 (236)
T ss_pred HHHHHHHH
Confidence 76665543
No 39
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=91.11 E-value=2.7 Score=36.43 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=82.8
Q ss_pred cEeehHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhcc
Q 027038 38 RLVLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANA 115 (229)
Q Consensus 38 ~~V~~G~~~Al~l~t~lav~~G~~l~~~--lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~ 115 (229)
+...-.+..+.+++- +..++|+++-++ ++..-.+..+|++.+..|+.|+....++++.++|.+|. + +.+
T Consensus 41 ~ia~~~~l~a~~ill-~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~----~--~~~-- 111 (201)
T TIGR00427 41 KIAKKANISSFIILL-IFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGEGEDKQHKDEKEES----A--EID-- 111 (201)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccc----c--ccc--
Confidence 345555555555554 666778877665 47778999999999999999996642211111110000 0 000
Q ss_pred CcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCC---cEeehHHHHHHHHHHHHHH
Q 027038 116 GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAV 192 (229)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~---~~V~~G~~~a~~l~t~lav 192 (229)
+ . .. .|. .+--=-|.-|=-+.+.++++++. ......+.....+.+.+.-
T Consensus 112 -~-i-----------ai--------vPL-------a~PllaGPGaIttvi~l~~~~~~~~~~~~~~~ai~~~~~~~~~~l 163 (201)
T TIGR00427 112 -S-I-----------AV--------VPL-------ALPLIAGPGAITTTMVLGARASSIGYKFLVVLAIALVALITWLLF 163 (201)
T ss_pred -C-e-----------ee--------eec-------ccccccCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 000 00000122222233333333211 1123344445556666666
Q ss_pred HHhHHhhhhcCH---HHHHHHHHHHHHHHHHHHhccc
Q 027038 193 IGGKSLASQISE---KIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 193 ~~G~~l~~~i~~---~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
..++++.+++.+ +.+.++.|++-...|+-+..++
T Consensus 164 ~~s~~l~~~LG~~g~~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 164 RYSAFIIRRLGRTGINVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 777888777754 5778999999999999888765
No 40
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=90.81 E-value=6.9 Score=35.33 Aligned_cols=186 Identities=19% Similarity=0.187 Sum_probs=107.3
Q ss_pred HHHHHHHHhhc---ccHHHHHHHHHHccCC----CcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 027038 10 KSLAMTVLSEI---GDKTFFAAAILAMRHP----RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGF 82 (229)
Q Consensus 10 ~sf~~iflaEl---GDKTql~~~~LA~r~~----~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~f 82 (229)
.++..+.+-|. +|+-.+++++ +.+.+ ++..+.|...|++.=.++ ...|.++-+.-+ +.-++-|..++.-
T Consensus 18 ~~l~tl~~lE~vL~iDN~iviai~-~~~Lp~~qr~ral~~Gl~~A~v~R~~l-l~~~s~Ll~l~~--~l~~~fg~~L~~~ 93 (254)
T COG0861 18 VALLTLILLEIVLGIDNAIVIAIL-ASKLPPKQRKKALFIGLAGALVLRIIL-LASISWLLTLTQ--PLLYIFGLYLLWR 93 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH--HHHHHHHHHHHHH
Confidence 56667777775 8988877664 33433 467899999888765544 455666644322 2333357777777
Q ss_pred HHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhc--cCchH
Q 027038 83 GLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGE--WGDKS 160 (229)
Q Consensus 83 G~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE--~GDKT 160 (229)
++.+++++.+ ++.++..|-.++.+ ++... + +.+..+ ...|+.+...+-++- +.=-|
T Consensus 94 ~~~ll~~~~~-----~~~k~~~~~~~~~~----~~~~~-----~--~~~~~~------~~~f~~ai~~I~i~D~vFSlDS 151 (254)
T COG0861 94 DIKLLLGGLF-----LLFKATKELHERLE----GEEFF-----V--NGKLKK------ATPFWGAIIQIELADLVFSLDS 151 (254)
T ss_pred HHHHHhcchh-----HHHHHHHHHhhhhc----ccccc-----c--cccccc------cCcHHHHHHHHHHHHHHHhhhH
Confidence 7777776532 11112211111111 00000 0 000000 122344433332221 11134
Q ss_pred HHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 161 QLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 161 Qlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
=+++++++ .+|+.++.|.+.+...+=..+=.+.+++-++ .++.+.+...-+..|+.++.++
T Consensus 152 V~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~---p~l~~~~~~iL~~IG~kli~~~ 212 (254)
T COG0861 152 VIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH---PTLKYLALVILLFIGVKLILEG 212 (254)
T ss_pred HHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666 6788899999999999988888888888664 5677777777788888887766
No 41
>PRK11469 hypothetical protein; Provisional
Probab=89.12 E-value=0.69 Score=39.68 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027038 185 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 185 ~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
.+++.++-..|+.+.+.+|+ +-|++++.+.+..|.|++++++
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999998777 6699999999999999999874
No 42
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=88.89 E-value=11 Score=37.61 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=38.5
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 027038 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL 87 (229)
Q Consensus 40 V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L 87 (229)
-.+|..+.+.+..+++..+|..+...+-..++.+..+++|+++|+.++
T Consensus 215 y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 215 YVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 367788888888888888888776555556788888999999999987
No 43
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=80.60 E-value=3.5 Score=28.99 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 027038 181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 219 (229)
Q Consensus 181 ~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg 219 (229)
..-..+++.++...|+.+.+++ .++.+++++++++.+|
T Consensus 30 g~~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 30 GIFQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 3445778888999999998855 5779999999998875
No 44
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=80.37 E-value=12 Score=32.75 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=91.7
Q ss_pred EeehHHHHHHHHHHHHHHHHHhhhhc--cccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccC
Q 027038 39 LVLSGCLGALIVMTILSAVVGWVAPN--LISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAG 116 (229)
Q Consensus 39 ~V~~G~~~Al~l~t~lav~~G~~l~~--~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~ 116 (229)
...-....|+.++ .+..++|+.+-+ -+|.+-.+..+|++.+..|+.|+....+..+.+.| |.+ ++
T Consensus 42 v~~ra~i~a~~il-l~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~~~~~~~~e--~~~---~~------- 108 (203)
T COG2095 42 VALRASIIALLIL-LVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPTSRPKKKRE--EGQ---ED------- 108 (203)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCCcCcCCCCcc--cCc---cC-------
Confidence 4555555555554 445566777766 45888899999999999999999876443211110 000 00
Q ss_pred cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccC-CcEeehHHHHHHHHHHHHHHHHh
Q 027038 117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGG 195 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~-~~~V~~G~~~a~~l~t~lav~~G 195 (229)
++. .- | +. +--=-|+-|==+++.++.+++ ...+..++++...+++.+.-...
T Consensus 109 ~ia------------iv--------P-LA------~PliaGPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s 161 (203)
T COG2095 109 SIA------------IV--------P-LA------IPLIAGPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSS 161 (203)
T ss_pred Cee------------ee--------c-cc------CccccCcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 0 00 000125555556666776654 34556666677777777777777
Q ss_pred HHhhhhcC---HHHHHHHHHHHHHHHHHHHhcccc
Q 027038 196 KSLASQIS---EKIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 196 ~~l~~~i~---~~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
..+.+++- .+.+.++-|++-..+|+-+..++.
T Consensus 162 ~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~Gl 196 (203)
T COG2095 162 SRIMRLLGKTGLNALTRIMGLLLAALGVQMILDGL 196 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777774 557788999999999998877654
No 45
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=79.65 E-value=12 Score=32.39 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=47.5
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027038 172 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 227 (229)
Q Consensus 172 ~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~ 227 (229)
+++.|.+|-.+|..+--..+.+++..+. .+|++|+-..-|++=+.+|++.++...
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALFSGE 78 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999888888888777764 899999988899999999999887654
No 46
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=79.58 E-value=10 Score=31.42 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccH---HHHHHHHHHHHHHHHHHHhhhh
Q 027038 43 GCLGALIVMTILSAVVGWVAPNLISR---KLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 43 G~~~Al~l~t~lav~~G~~l~~~lp~---~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
|.+.+..+...+-...++.+.+++.. ++++.+++++++.+|+++++++
T Consensus 141 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 141 GIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444444444444444444443333 2889999999999999999863
No 47
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=78.31 E-value=42 Score=28.69 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=39.7
Q ss_pred EeehHHHHHHHHHHHHHHHHHhhhhccc------cHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 39 LVLSGCLGALIVMTILSAVVGWVAPNLI------SRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 39 ~V~~G~~~Al~l~t~lav~~G~~l~~~l------p~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
..+.|................+.+.... ...+++++.|++++.+|.+..+..
T Consensus 33 af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 33 AFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3667778888877777777777776333 345789999999999999988765
No 48
>COG1971 Predicted membrane protein [Function unknown]
Probab=75.70 E-value=6.7 Score=34.07 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccccC
Q 027038 184 QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 228 (229)
Q Consensus 184 ~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~~ 228 (229)
++++..++-..|++++++ +..+=||+++++....|+++++++++
T Consensus 47 ~~i~pliG~~~g~~~s~~-i~~~~~wigf~lL~~lG~~mI~e~f~ 90 (190)
T COG1971 47 QAIMPLIGWFIGKFLSTF-IAEWAHWIGFVLLIILGLKMIIEGFK 90 (190)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555432 36788999999999999999999865
No 49
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=74.09 E-value=74 Score=29.42 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHH
Q 027038 68 RKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKA 147 (229)
Q Consensus 68 ~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a 147 (229)
+++-+.+.|..++++|+.++.++.++=.+++...+.-+.++ ..+. ..++..
T Consensus 127 ~~~G~~l~G~gllf~gl~~m~~~~~pl~~~~~~~~~~~~l~-----------------------~~~~------~~~l~G 177 (307)
T TIGR00704 127 GQLGRSGIGLGLIFLALELISQLVTPLTQANGVQVIFASLT-----------------------GSIL------LDLLIG 177 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhc-----------------------cCcH------HHHHHH
Confidence 34456777888888888888877543212222222211111 0111 112333
Q ss_pred HHHHHhhccCchHHHHHHHHHccc-----CCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHH--HHHHHHHHHHHH
Q 027038 148 FSITFFGEWGDKSQLATIGLAADE-----NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKI--VALSGGVLFIVF 218 (229)
Q Consensus 148 f~~~FlaE~GDKTQlati~LAa~~-----~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~--v~~~~g~lFl~f 218 (229)
+.++.+---=--+=..++.|+... ...++.+|+=+|-.+...++...+..-++|+.--. .+.++.++|+.+
T Consensus 178 ~~lT~ivQSSsA~i~i~~~la~~G~i~~~~a~~lvlGaNiGT~~ta~las~g~~~~arr~Alahllfn~~g~ll~lp~ 255 (307)
T TIGR00704 178 AVLTIISHSSSAAVLITATLTAAGIIGFPVALCLVLGSNLGSGILAMLAASAANAAARRVALGHVLFNVVGSLIILPF 255 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhcchhHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322222223444555543 13567788888888888888887777777765443 366666666554
No 50
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=73.08 E-value=15 Score=31.98 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=46.0
Q ss_pred ccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 170 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 170 ~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
+++++.+.+|-.+|...--..++.++..+ ..+|++|+-..-|++=+.+|++.+++.
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~~~ 76 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAIKG 76 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHhcc
Confidence 46889999999999888777777755544 689999998888898899999887763
No 51
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=72.23 E-value=5.7 Score=27.92 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 027038 47 ALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG 83 (229)
Q Consensus 47 Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG 83 (229)
-..+++.++..+|+.+.+++ .++.+++++++++++|
T Consensus 32 ~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 32 FQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 34678888899999998855 4779999999998775
No 52
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=71.09 E-value=76 Score=28.25 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhhhccccHHHH---HHHHHHHHHHHHHHHhhhhhcC---------CCChhhHHHHHHhhhhhhhhccCcc
Q 027038 51 MTILSAVVGWVAPNLISRKLT---HHITTVLFFGFGLWSLWDAFSD---------GGEAEEFEEVEKKLDADFKANAGAT 118 (229)
Q Consensus 51 ~t~lav~~G~~l~~~lp~~~v---~~~a~~lFl~fG~~~L~~~~~~---------~~~~~e~~e~e~~~~~~~~~~~~~~ 118 (229)
.-++.-.+|..+.+++|+++- ....|+.=+..|+.+..+.... ..---|.=+.|+.+++-.++-++
T Consensus 10 aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~vi~slvlG~iiGe~l~ie~~l~~l~~~l~~-- 87 (226)
T PF04474_consen 10 AILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLLVILSLVLGTIIGELLDIEDRLERLGEKLEK-- 87 (226)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 334555566677788888874 3445555567777776654110 00011333344444332211100
Q ss_pred cCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhc-----------cCchHHH---------HHHHHHcccCCcEeeh
Q 027038 119 KEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGE-----------WGDKSQL---------ATIGLAADENPFGVVL 178 (229)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE-----------~GDKTQl---------ati~LAa~~~~~~V~~ 178 (229)
|..++.-..-+.+.|.++..++=+.- -||-|.+ +++.+|+.+. +.|..
T Consensus 88 -----------k~~~~~~~~~f~~gFvtasllfCvG~m~I~Gsi~~Gl~gd~siL~~KsiLDg~taiifaaslG-~gV~~ 155 (226)
T PF04474_consen 88 -----------KFGKSGGDSSFAEGFVTASLLFCVGAMAILGSIQDGLTGDPSILLTKSILDGFTAIIFAASLG-IGVAF 155 (226)
T ss_pred -----------HccCCCCcccHHHHHHHHHHHHHcchhHHHhHHHhHhcCChHHHHHHHHHHHHHHHHHHHHcC-chHHH
Confidence 00000000113456666665443332 2888876 4577787765 34444
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhcCHHHH---HHHHHHHHHHHHHHHhc
Q 027038 179 GGIIGQALCTTAAVIGGKSLASQISEKIV---ALSGGVLFIVFGIQSFL 224 (229)
Q Consensus 179 G~~~a~~l~t~lav~~G~~l~~~i~~~~v---~~~~g~lFl~fg~~~l~ 224 (229)
-+.--.+....+. +++++++..+++..+ +.++|++-+..|+-++.
T Consensus 156 saipv~iyQg~l~-llA~~l~~~ls~~~i~~~savGGili~~iGlnll~ 203 (226)
T PF04474_consen 156 SAIPVFIYQGSLT-LLAGFLAPLLSPAMINEISAVGGILILAIGLNLLG 203 (226)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444455554 556677778888765 67888899999887663
No 53
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.83 E-value=76 Score=29.56 Aligned_cols=75 Identities=23% Similarity=0.386 Sum_probs=47.5
Q ss_pred hhccc-HHHHHHHHHHccCC-CcEeehHHHHHHHH--------HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 027038 18 SEIGD-KTFFAAAILAMRHP-RRLVLSGCLGALIV--------MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL 87 (229)
Q Consensus 18 aElGD-KTql~~~~LA~r~~-~~~V~~G~~~Al~l--------~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L 87 (229)
.|-|- |+-+++-+.+.+-+ +..+.++-.+++.= .-.+.|+-+.-+.-..+..|...++.++-+.+|+|++
T Consensus 70 lgPGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~Ll~~~G~w~~ 149 (303)
T COG2215 70 LGPGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFLLLILLGLWLL 149 (303)
T ss_pred cCCCcchHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44553 66666666665544 23466665544321 2223333444455566788999999999999999999
Q ss_pred hhhhc
Q 027038 88 WDAFS 92 (229)
Q Consensus 88 ~~~~~ 92 (229)
|...+
T Consensus 150 ~r~lr 154 (303)
T COG2215 150 WRTLR 154 (303)
T ss_pred HHHHH
Confidence 98754
No 54
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=68.24 E-value=1.2e+02 Score=29.23 Aligned_cols=53 Identities=25% Similarity=0.187 Sum_probs=30.2
Q ss_pred HHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 027038 27 AAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLF 79 (229)
Q Consensus 27 ~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lF 79 (229)
+++-+.-.+++..-..-...++.+.+++++=+|.++.+.+-=|..-++.+.+=
T Consensus 125 ~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ 177 (394)
T COG2814 125 LAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLA 177 (394)
T ss_pred HHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444445555566666777777777777766565554444433
No 55
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=66.31 E-value=43 Score=25.84 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=33.4
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhh--ccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 40 VLSGCLGALIVMTILSAVVGWVAP--NLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 40 V~~G~~~Al~l~t~lav~~G~~l~--~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
..++.+.++...-.+.+.+..++. ..+|+.+.-.+.+.++++.+...++-+
T Consensus 41 ~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~i~~~~~ 93 (121)
T PF07332_consen 41 LVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLALILLLIG 93 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666663 334777888888888888888766544
No 56
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=65.94 E-value=83 Score=26.70 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=37.4
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh
Q 027038 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 88 (229)
Q Consensus 40 V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~ 88 (229)
...|....+.+.......+|+.+.+. ..+...+.+++.+.+|+.++.
T Consensus 47 f~~G~~~~~~~lG~~~~~~g~~~~~~--~~~~~~i~g~~~i~~Gl~~l~ 93 (211)
T PF02683_consen 47 FVLGFALVFALLGLGAGALGSFFGQI--SPWLYIIAGVLLILFGLSLLG 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44677777888888888888887633 458899999999999998874
No 57
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=64.39 E-value=87 Score=26.38 Aligned_cols=49 Identities=16% Similarity=-0.021 Sum_probs=30.8
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH----HHHHHHHHHHHhh
Q 027038 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHIT----TVLFFGFGLWSLW 88 (229)
Q Consensus 40 V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a----~~lFl~fG~~~L~ 88 (229)
-.+|=+.+..+.-.++..+|+.+......+.++... +.+.+.+|+++++
T Consensus 38 y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~~~~~~l~~gl~~l~ 90 (199)
T PF13386_consen 38 YNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGILLGLLGLFLGLRLLG 90 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667778888888888888886654434444444 4444444555664
No 58
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=61.31 E-value=15 Score=28.17 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hh---cCCCChhhHHHHHHhhhhhh
Q 027038 69 KLTHHITTVLFFGFGLWSLWD-AF---SDGGEAEEFEEVEKKLDADF 111 (229)
Q Consensus 69 ~~v~~~a~~lFl~fG~~~L~~-~~---~~~~~~~e~~e~e~~~~~~~ 111 (229)
+.+.++=..+-+.||.+.+.. ++ .=+|.+|+.+|.++|+++..
T Consensus 35 ~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK 81 (91)
T PF08285_consen 35 EIIPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAK 81 (91)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHH
Confidence 344444455556667666532 22 33567788888888887644
No 59
>COG0730 Predicted permeases [General function prediction only]
Probab=60.64 E-value=24 Score=30.84 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 47 ALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 47 Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
.+.+.+.++..+|..+.+++|++.++.+.+.+.+..+++++++.
T Consensus 211 ~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~ 254 (258)
T COG0730 211 LLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRG 254 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999999999998765
No 60
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=60.61 E-value=32 Score=31.02 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=42.6
Q ss_pred HHHHHHHccCCCc----EeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh
Q 027038 26 FAAAILAMRHPRR----LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 88 (229)
Q Consensus 26 l~~~~LA~r~~~~----~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~ 88 (229)
++++.++.+++|. .++.|..++++........-...-...+|+.+.-|+.-++|+++|+++++
T Consensus 287 lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l~p~~a~w~p~ii~~~~~~~l~~ 353 (354)
T PF03739_consen 287 LLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGENGNLPPFIAAWLPNIIFLILGLYLLR 353 (354)
T ss_pred HHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778887653 25555555555433333333333345799999999999999999999875
No 61
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=58.43 E-value=1.2e+02 Score=27.98 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC
Q 027038 69 KLTHHITTVLFFGFGLWSLWDAFSD 93 (229)
Q Consensus 69 ~~v~~~a~~lFl~fG~~~L~~~~~~ 93 (229)
..++.++|+.++.+|+.++.++.++
T Consensus 3 ~~~~llgGlgl~l~Gl~~~~~~l~~ 27 (307)
T TIGR00704 3 TLLHLLSAVAFLLWGMHIVRTGVMR 27 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998753
No 62
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=58.21 E-value=84 Score=28.72 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=42.1
Q ss_pred HHHHHHHccCCCc-----EeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhh
Q 027038 26 FAAAILAMRHPRR-----LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (229)
Q Consensus 26 l~~~~LA~r~~~~-----~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~ 89 (229)
++++.++.+.+|. .+..|..++++...+..+.---.....+||...-|+--++|+++|+++++.
T Consensus 286 lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~laaw~P~iif~~~~~~ll~r 354 (356)
T PRK15071 286 LMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSLVYGIPPIIGALLPSLLFLGISLYLLRR 354 (356)
T ss_pred HHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677777765442 244555555544333333322334568999999999999999999998864
No 63
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=57.25 E-value=29 Score=29.49 Aligned_cols=46 Identities=22% Similarity=0.127 Sum_probs=37.7
Q ss_pred ehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 027038 41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWS 86 (229)
Q Consensus 41 ~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~ 86 (229)
.+.....+...+.+...+|+.+.+++|+++.+.+..++.+..|+.+
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~l 240 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLKL 240 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 4455556778888999999999999999999999888888887753
No 64
>PRK10621 hypothetical protein; Provisional
Probab=56.23 E-value=42 Score=29.69 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=40.3
Q ss_pred eehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027038 176 VVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 224 (229)
Q Consensus 176 V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~ 224 (229)
+=.-...-+.+...+++..|.++.+++|++.++.+-+++-+..++++++
T Consensus 75 v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~ 123 (266)
T PRK10621 75 VNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLL 123 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677788899999999999999999999998888888887764
No 65
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=56.00 E-value=77 Score=27.22 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 027038 48 LIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL 84 (229)
Q Consensus 48 l~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~ 84 (229)
..+-..++-.+|.++.+..+-++.-++.+++.+...+
T Consensus 130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 3344455555555555666666677777777766655
No 66
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=54.97 E-value=1.1e+02 Score=30.03 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHH
Q 027038 180 GIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGI 220 (229)
Q Consensus 180 ~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~ 220 (229)
+..+.-..+.+..+.|-++-+|++.|.+.+++..+-.++-+
T Consensus 310 an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~ 350 (485)
T KOG0569|consen 310 ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALL 350 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 34555566666777777777888888887777665444433
No 67
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=52.88 E-value=98 Score=30.61 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcc-CchHHHHHHHHHcccCCcEeehHHHH----HHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHH
Q 027038 142 PIFLKAFSITFFGEW-GDKSQLATIGLAADENPFGVVLGGII----GQALCTTAAVIGGKSLASQISEKIVALSGGVLFI 216 (229)
Q Consensus 142 ~~f~~af~~~FlaE~-GDKTQlati~LAa~~~~~~V~~G~~~----a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl 216 (229)
..+...+...|..+- ++-+|-.++.+-.-.+-..|+-++.. |.+.+........-.+.+..+.+.+.+.....|.
T Consensus 266 vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~ 345 (488)
T KOG2325|consen 266 VCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFL 345 (488)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHH
Confidence 557778888888887 99999999888765433444443333 3333333333333333333455566665566666
Q ss_pred HHHHHH
Q 027038 217 VFGIQS 222 (229)
Q Consensus 217 ~fg~~~ 222 (229)
.+-+.+
T Consensus 346 ~~~i~~ 351 (488)
T KOG2325|consen 346 SYYIFT 351 (488)
T ss_pred hhheee
Confidence 655544
No 68
>COG0795 Predicted permeases [General function prediction only]
Probab=50.15 E-value=60 Score=29.82 Aligned_cols=65 Identities=25% Similarity=0.433 Sum_probs=46.8
Q ss_pred HHHHHHHccCCC----c-EeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 26 FAAAILAMRHPR----R-LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 26 l~~~~LA~r~~~----~-~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
++++.++.+++| . .++.|...+++...+............+|+.+.-|.-.++|++.|+|.++..
T Consensus 292 lla~~l~~~~~R~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~p~~a~~~p~~i~l~~~~~l~~~~ 361 (364)
T COG0795 292 LLALPLSLRNPRSGRLGLRLLGGILLGLLFYVLLFLLGALALAGKLPPFLAAWLPNLVFLALGLWLLRRK 361 (364)
T ss_pred HHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567788888776 1 2444445555555555554445566789999999999999999999998753
No 69
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=49.75 E-value=63 Score=29.79 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHHHHHccCCCc----EeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh
Q 027038 27 AAAILAMRHPRR----LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 88 (229)
Q Consensus 27 ~~~~LA~r~~~~----~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~ 88 (229)
+++.|+.+.+|. .++.|..+++.--.+..+.-.......+|+.+--|.--++|++.|+++++
T Consensus 282 lavpl~~~~~R~g~~~~i~~~i~~~~~y~~l~~~~~~l~~~g~lpp~la~Wlp~i~~~~~~~~l~~ 347 (366)
T PRK15120 282 MVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGGKGKLDPMIWMWAVNLIYLALAIVLNL 347 (366)
T ss_pred HHhhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 367787776653 25555555554444444443334456899999999999999999999885
No 70
>PRK00259 intracellular septation protein A; Reviewed
Probab=44.59 E-value=66 Score=27.46 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=36.8
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027038 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 224 (229)
Q Consensus 177 ~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~ 224 (229)
+..++.+.+..+.+++.......+++|.. ++++.++-++||..+++
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~~~~v~~m--~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIRYRKVEKM--QLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHHHHHHHH
Confidence 55667778888888888888888877655 78888888888888874
No 71
>PRK01637 hypothetical protein; Reviewed
Probab=43.01 E-value=49 Score=29.70 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=25.4
Q ss_pred cEeehHHHHHHHHHHHHHHHHHhhhhcc
Q 027038 38 RLVLSGCLGALIVMTILSAVVGWVAPNL 65 (229)
Q Consensus 38 ~~V~~G~~~Al~l~t~lav~~G~~l~~~ 65 (229)
+.++.|+..+.+++.+++.+++.++.+.
T Consensus 202 r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~ 229 (286)
T PRK01637 202 RHALVGALVAALLFELGKKGFALYITTF 229 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999999764
No 72
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=43.00 E-value=1e+02 Score=27.84 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcc----c----c-HHHHHHHHHHHHHHHHHHHh
Q 027038 42 SGCLGALIVMTILSAVVGWVAPNL----I----S-RKLTHHITTVLFFGFGLWSL 87 (229)
Q Consensus 42 ~G~~~Al~l~t~lav~~G~~l~~~----l----p-~~~v~~~a~~lFl~fG~~~L 87 (229)
+|..++..+++...++.|...+++ + | ..+..+++ +.+.++|..++
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G-~~l~~~~~~~f 132 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIG-VALVLVSGIIF 132 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHH-HHHHHHHHHhe
Confidence 788899999999999999887654 2 2 22344444 44445555443
No 73
>PF13347 MFS_2: MFS/sugar transport protein
Probab=42.43 E-value=2.8e+02 Score=25.53 Aligned_cols=41 Identities=15% Similarity=-0.029 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHh
Q 027038 183 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 223 (229)
Q Consensus 183 a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l 223 (229)
...+.+.++..+...+.+|+..+..-..+.+++....++..
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence 44556666777778888888888777777777666655543
No 74
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=40.56 E-value=2.6e+02 Score=24.64 Aligned_cols=28 Identities=7% Similarity=-0.082 Sum_probs=15.9
Q ss_pred HHHHHHHhHHhhhhcCHHHHHHHHHHHH
Q 027038 188 TTAAVIGGKSLASQISEKIVALSGGVLF 215 (229)
Q Consensus 188 t~lav~~G~~l~~~i~~~~v~~~~g~lF 215 (229)
..++...+.++.+|+.+|.+...+..+.
T Consensus 243 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 270 (377)
T PRK11102 243 LFVMTIINSRFVRRVGALNMLRFGLWIQ 270 (377)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3444455555667777776655544433
No 75
>PRK09304 arginine exporter protein; Provisional
Probab=40.03 E-value=74 Score=27.03 Aligned_cols=43 Identities=5% Similarity=0.018 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhccc--c--HHHHHHHHHHHHHHHHHHHhhhhh
Q 027038 49 IVMTILSAVVGWVAPNLI--S--RKLTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 49 ~l~t~lav~~G~~l~~~l--p--~~~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
..+...-+.+|+.+.+++ | .++++.+.|++++.+|++++.++.
T Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~~~~ 203 (207)
T PRK09304 157 FLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLARQGI 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444445555544444 2 257789999999999999998763
No 76
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=39.86 E-value=4.1e+02 Score=26.76 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHH
Q 027038 69 KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAF 148 (229)
Q Consensus 69 ~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af 148 (229)
.++++++++..+.||..+++++.+.-.++ . .++-+.+ -..+| ...++..+
T Consensus 6 ~~l~l~g~v~l~L~g~~~m~~Gv~~~~G~-~---lr~~L~~--------------------~t~np------~~gvl~Gi 55 (533)
T COG1283 6 VLLNLLGAVALLLFGIKMVGDGVQRAAGD-R---LRKILAR--------------------FTSNP------ILGVLAGI 55 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH-H---HHHHHHH--------------------hcCCc------HHHHHHHH
Confidence 57899999999999999999986532111 1 1111110 01111 13466667
Q ss_pred HHHHhhccCchHHHHHHHHHccc-----CCcEeehHHHHHHHHHHHHHHH
Q 027038 149 SITFFGEWGDKSQLATIGLAADE-----NPFGVVLGGIIGQALCTTAAVI 193 (229)
Q Consensus 149 ~~~FlaE~GDKTQlati~LAa~~-----~~~~V~~G~~~a~~l~t~lav~ 193 (229)
+++-+----+-|-+.|+.+.++. ...+|.+|+=+|..+.+-+-.+
T Consensus 56 ~~T~llQSStatt~lt~gfV~aGl~sl~~Ai~vilGANIGTt~Ta~iva~ 105 (533)
T COG1283 56 VATALLQSSTATTVLTIGFVAAGLLSLKQAIGVILGANIGTTVTAWIVAL 105 (533)
T ss_pred HHHHHHHhcchHHHHHHHHHhccccchhhhhhheeccchhHHHHHHHHHH
Confidence 77777777788889999998773 2367888988888777655444
No 77
>TIGR00895 2A0115 benzoate transport.
Probab=38.36 E-value=2.7e+02 Score=24.23 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHhhhhcCHH
Q 027038 186 LCTTAAVIGGKSLASQISEK 205 (229)
Q Consensus 186 l~t~lav~~G~~l~~~i~~~ 205 (229)
+...++.+.+..+.+|++.+
T Consensus 296 ~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 296 FGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHHHHhhcchH
Confidence 34455555666666777666
No 78
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=38.16 E-value=83 Score=31.37 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=34.1
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHh
Q 027038 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 223 (229)
Q Consensus 177 ~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l 223 (229)
.+|.++...+...++..+|..+...+-..++.+..+++|+++|+.++
T Consensus 216 ~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 216 VQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666667777665545556888888999999998774
No 79
>PRK00944 hypothetical protein; Provisional
Probab=37.82 E-value=85 Score=27.33 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=47.4
Q ss_pred ccCCCcE---eehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhc
Q 027038 33 MRHPRRL---VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS 92 (229)
Q Consensus 33 ~r~~~~~---V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~ 92 (229)
-|||... =..|.....-++..++.++|-++++++|. +++...++.|=.+-.+++||.+.
T Consensus 114 ~RYR~aTisldY~GDSVlNSv~D~~~M~~GF~~A~rlPv-~vtv~lai~fEl~~~~~IRDnLt 175 (195)
T PRK00944 114 ERYRAATISLDYYGDSILNSVMDTLAMVLGFLFAARLPV-WLTVAIAIFFEIFTGWLIRDNLT 175 (195)
T ss_pred HHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhccccc
Confidence 3555432 35678888889999999999999999997 66777888888999999998753
No 80
>PRK10995 inner membrane protein; Provisional
Probab=36.38 E-value=1.4e+02 Score=25.93 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=28.7
Q ss_pred HHHHHhHHhhhhc--CHHHHHHHHHHHHHHHHHHHhccc
Q 027038 190 AAVIGGKSLASQI--SEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 190 lav~~G~~l~~~i--~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
+..++|+.+-+.+ +....++.+|++.+.+|+.++++.
T Consensus 57 ~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 57 VAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455566655544 788999999999999999998764
No 81
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=35.91 E-value=1.1e+02 Score=25.75 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027038 68 RKLTHHITTVLFFGFGLWSLW 88 (229)
Q Consensus 68 ~~~v~~~a~~lFl~fG~~~L~ 88 (229)
.++++.+.|.+|+.+|+++.|
T Consensus 175 ~~~i~~~~g~~l~~~a~~l~~ 195 (195)
T PRK10323 175 GRQLNIVLALLLVYCAVRIFY 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999999998865
No 82
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=35.61 E-value=1.2e+02 Score=26.70 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhh
Q 027038 31 LAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 31 LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
.+...+++.++.|...+...+-..+-.+.+++.++ .++++.+...-...|+.++.+++
T Consensus 118 ~git~~~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~~ 175 (215)
T TIGR03716 118 VALSGQFWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLETL 175 (215)
T ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677899999999999999999988888554 46788888888899999999874
No 83
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=35.23 E-value=3.1e+02 Score=24.05 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=53.5
Q ss_pred HhhccCchHHHHHHHHHcc---cCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 152 FFGEWGDKSQLATIGLAAD---ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 152 FlaE~GDKTQlati~LAa~---~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
|.|-==|--=+..+.+|.+ ++.+.+.+|-.+|...--+.+.. +.+..+.+|++|+-..-|++=+..|++.++.+
T Consensus 12 y~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~-~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~ 88 (205)
T COG4300 12 YIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLL-FAFVLNFVPEEWILGLLGLIPIYLGIKVLILG 88 (205)
T ss_pred HHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHH-HHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcc
Confidence 4444445555666666754 45788999988887665554443 44467888999999999999999999988754
No 84
>PF14007 YtpI: YtpI-like protein
Probab=34.65 E-value=80 Score=24.15 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccccC
Q 027038 203 SEKIVALSGGVLFIVFGIQSFLSPVK 228 (229)
Q Consensus 203 ~~~~v~~~~g~lFl~fg~~~l~~~~~ 228 (229)
++.+++++.|++|+++|+..++.+++
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67889999999999999998876643
No 85
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=34.43 E-value=50 Score=28.80 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=27.9
Q ss_pred EeehHHHHHHHHHHHHHHHHHhhhhcc----------ccH-HHHHHHHH----HHHHHHHHHHhhhh
Q 027038 39 LVLSGCLGALIVMTILSAVVGWVAPNL----------ISR-KLTHHITT----VLFFGFGLWSLWDA 90 (229)
Q Consensus 39 ~V~~G~~~Al~l~t~lav~~G~~l~~~----------lp~-~~v~~~a~----~lFl~fG~~~L~~~ 90 (229)
..|=|+.+.+.+. .+.+.+....+.+ +++ ..++.+++ +.++..|+..|..+
T Consensus 88 ~lFdg~SL~Ly~~-~i~vYltni~~gi~~~~~~~~~~v~r~~~l~VlAASn~Ii~~~LvGVLvLQaG 153 (196)
T PF08229_consen 88 KLFDGASLVLYVF-GICVYLTNIVPGIRSVSSGNWGEVDREDGLRVLAASNTIIALVLVGVLVLQAG 153 (196)
T ss_pred hcccchhHHHHHH-HHHHHhHhhHhHHHhcCCCCcccccHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 4677777766544 3445555544321 121 12444433 56778888888655
No 86
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=33.63 E-value=1.1e+02 Score=26.09 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=43.2
Q ss_pred CCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhh
Q 027038 35 HPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (229)
Q Consensus 35 ~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~ 89 (229)
.+.+.++.|...+...+-..+-.+.+++.++ .++++.++..-...|+.++.+
T Consensus 132 ~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 132 DDFFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 5667799999999999999999999998664 467888888888889888753
No 87
>TIGR00948 2a75 L-lysine exporter.
Probab=33.06 E-value=1.6e+02 Score=24.07 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=40.0
Q ss_pred cEeehHHHHHHHHHHHHHHHHhHHhhhhcCH--HHHHHHHHHHHHHHHHHHhccc
Q 027038 174 FGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 174 ~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~--~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
....+|..+|..+-..+++++-..+-+..|. ..+++++++-.+-+|..++++.
T Consensus 23 ~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 23 LLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888888887777666663 4677777777777998887754
No 88
>COG1238 Predicted membrane protein [Function unknown]
Probab=32.96 E-value=2.7e+02 Score=23.42 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCH
Q 027038 141 SPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISE 204 (229)
Q Consensus 141 ~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~ 204 (229)
...|..+|+--.+-=.+.---+..+.++. ++|+....=+++|..+-+...-.+|+...+.+..
T Consensus 20 ~~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 20 AGLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 35677888777777777778888888888 8898888888888888888888888887766654
No 89
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=32.28 E-value=2.5e+02 Score=24.69 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhh----cccc---HHHHHHHHHHHHHHH
Q 027038 10 KSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAP----NLIS---RKLTHHITTVLFFGF 82 (229)
Q Consensus 10 ~sf~~iflaElGDKTql~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~----~~lp---~~~v~~~a~~lFl~f 82 (229)
..+..|.+=++.+-==+...+.....+++..+. ......+++-+++++|.++. ...+ ..+..-+++..|+..
T Consensus 202 ~~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv 280 (317)
T PF02535_consen 202 SLFIAIILHKIPEGFALGSILVKAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYV 280 (317)
T ss_pred HHHHHHHHhHhHHHhhhhhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHH
Confidence 334444443333322222333344455555444 77888899999999999992 2222 223344555556566
Q ss_pred HHHHh
Q 027038 83 GLWSL 87 (229)
Q Consensus 83 G~~~L 87 (229)
++.-+
T Consensus 281 ~~~el 285 (317)
T PF02535_consen 281 AFVEL 285 (317)
T ss_pred HHHHH
Confidence 65533
No 90
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=32.11 E-value=1.3e+02 Score=24.70 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=41.6
Q ss_pred CcEeehHHHHHHHHHHHHHHHHhHHhhhhcCH--HHHHHHHHHHHHHHHHHHhcc
Q 027038 173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLS 225 (229)
Q Consensus 173 ~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~--~~v~~~~g~lFl~fg~~~l~~ 225 (229)
.+.+.+|..+|..+-..+++.+-..+-+..|. ..++++++...+-+|..++++
T Consensus 21 ~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 21 GVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46678899999999988888876666666674 677888888878899887764
No 91
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=32.01 E-value=76 Score=23.96 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=23.4
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHhcc
Q 027038 198 LASQISEKIVALSGGVLFIVFGIQSFLS 225 (229)
Q Consensus 198 l~~~i~~~~v~~~~g~lFl~fg~~~l~~ 225 (229)
..+++|++.-..+.-++|++|++..+|-
T Consensus 18 ~c~~Lsp~~R~~vvl~ml~~fa~l~ly~ 45 (85)
T PF13150_consen 18 YCGRLSPKQRLRVVLVMLVLFAALCLYM 45 (85)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999877653
No 92
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=32.00 E-value=2.2e+02 Score=21.34 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh
Q 027038 55 SAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 88 (229)
Q Consensus 55 av~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~ 88 (229)
-+++|...+ -.|.-|.+.++|.++++.|++.+-
T Consensus 26 D~~F~~~~~-p~~~lwlqfl~G~~lf~~G~~Fi~ 58 (77)
T PF11118_consen 26 DTVFGILFS-PFPSLWLQFLAGLLLFAIGVGFIA 58 (77)
T ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 344555553 457889999999999999988763
No 93
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=31.88 E-value=3.3e+02 Score=23.32 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=16.4
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 027038 53 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLW 85 (229)
Q Consensus 53 ~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~ 85 (229)
.++..+|.++.+..+-++.-++.++.++...+.
T Consensus 142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555444433
No 94
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=31.48 E-value=1.7e+02 Score=24.77 Aligned_cols=53 Identities=11% Similarity=-0.039 Sum_probs=41.3
Q ss_pred cCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhh
Q 027038 34 RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (229)
Q Consensus 34 r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~ 89 (229)
+.+.+.++.|..++..++-..|-.+.+++.++ .++++.+...-...|+.++.+
T Consensus 123 ~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~---p~l~~~~~~~L~~ig~kl~~~ 175 (176)
T TIGR03717 123 HGHLGLLIFGLLLSIPIIVWGSTLILKLMDRF---PWIIYIGAALLGYVAGEMIVT 175 (176)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Confidence 43556788999999888888888888877554 467888888888889988863
No 95
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=31.24 E-value=2.6e+02 Score=26.01 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=53.4
Q ss_pred HHHHhhcccHHHH---HHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 14 MTVLSEIGDKTFF---AAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 14 ~iflaElGDKTql---~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
.+..-|+=|=.+= +.+..|...+++.|+.+-..|....-.+--++.+.+.++ .++++.+++.-...|++|+.++
T Consensus 194 vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf---~~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 194 VLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERF---HYLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455554442 234556666888999999988887777776677777553 4789999999999999999864
No 96
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.44 E-value=1e+02 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhccccHHH
Q 027038 46 GALIVMTILSAVVGWVAPNLISRKL 70 (229)
Q Consensus 46 ~Al~l~t~lav~~G~~l~~~lp~~~ 70 (229)
..+++.+++++.+|.|+-+..|...
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 4567778888999999988887644
No 97
>PF10755 DUF2585: Protein of unknown function (DUF2585); InterPro: IPR019691 This family is conserved in Proteobacteria. The function is not known, but it is thought to be a transmembrane protein. ; GO: 0005886 plasma membrane
Probab=30.25 E-value=1.5e+02 Score=25.18 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=42.3
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhh
Q 027038 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 40 V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
=..|.....-+...++.++|-++++++|. +++...++.|=.+..+.+||.+
T Consensus 95 ~Y~GDSV~NSv~D~~~m~~GF~lA~rlPv-~~tv~lai~~E~~~~~~IRDnL 145 (165)
T PF10755_consen 95 DYFGDSVLNSVSDTLAMVLGFLLARRLPV-WVTVALAIAFELLTGWVIRDNL 145 (165)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHhhcch
Confidence 35678888888899999999999999997 5667777888888888888865
No 98
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=28.72 E-value=3.2e+02 Score=26.26 Aligned_cols=32 Identities=9% Similarity=-0.075 Sum_probs=19.1
Q ss_pred HHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHH
Q 027038 190 AAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 221 (229)
Q Consensus 190 lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~ 221 (229)
++|.++|--...++.|.+.+.+-+-++-+.++
T Consensus 292 ~GVFISRSS~~~~rir~lwils~LQ~~nl~~~ 323 (402)
T PF02487_consen 292 LGVFISRSSLPFFRIRRLWILSLLQVINLVFL 323 (402)
T ss_pred HHHhhhhcceeeeehhhHHHHHHHHHHHHHHH
Confidence 46666666556666666666655555555444
No 99
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=28.66 E-value=3.9e+02 Score=24.49 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccc--cHHHHH---HHHHHHHHHHHHHHhhhhh
Q 027038 42 SGCLGALIVMTILSAVVGWVAPNLI--SRKLTH---HITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 42 ~G~~~Al~l~t~lav~~G~~l~~~l--p~~~v~---~~a~~lFl~fG~~~L~~~~ 91 (229)
+|..+.+.....+.+.-.+...++. ..++.+ ++++++=+++|+++.|+..
T Consensus 220 lGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~ 274 (279)
T PRK10019 220 IGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGVHGF 274 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444333443 344556 9999999999999999764
No 100
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=28.35 E-value=1.5e+02 Score=25.28 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=35.1
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027038 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 224 (229)
Q Consensus 177 ~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~ 224 (229)
+.=++.+.+.++.+.+.......+|+| ..+++++++=++||..+++
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~~~~v~--~m~~is~~lv~vFGglTl~ 67 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVKYKKVE--KMQWISFVLIVVFGGLTLI 67 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHHHHHH
Confidence 444566777888888888888888665 5677888888888888775
No 101
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=28.27 E-value=2e+02 Score=25.19 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=6.0
Q ss_pred HHHHHHHHHhHHh
Q 027038 186 LCTTAAVIGGKSL 198 (229)
Q Consensus 186 l~t~lav~~G~~l 198 (229)
++-.+.+..+..+
T Consensus 140 v~~i~~i~~~~~~ 152 (248)
T PF11368_consen 140 VLLILTIILQKFL 152 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444445444
No 102
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=28.18 E-value=1.1e+02 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhHHhhhhcCHHH
Q 027038 182 IGQALCTTAAVIGGKSLASQISEKI 206 (229)
Q Consensus 182 ~a~~l~t~lav~~G~~l~~~i~~~~ 206 (229)
..+++.+.+++.+|.++=++.|.+.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 3456778889999999999887644
No 103
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=28.05 E-value=1.7e+02 Score=27.30 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=45.3
Q ss_pred hHHHHHHHHHcccC-CcEeehHHHHHH--------HHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 159 KSQLATIGLAADEN-PFGVVLGGIIGQ--------ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 159 KTQlati~LAa~~~-~~~V~~G~~~a~--------~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
|+-++|-..+.+-+ +..+.++-..++ .+.-...|+-+....-..++.++..++.++-+.+|+|++|..
T Consensus 76 Kaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~Ll~~~G~w~~~r~ 152 (303)
T COG2215 76 KAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFLLLILLGLWLLWRT 152 (303)
T ss_pred hHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766533 234444433222 222233455566677777899999999999999999999865
No 104
>PF14007 YtpI: YtpI-like protein
Probab=27.63 E-value=1.6e+02 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhhc
Q 027038 66 ISRKLTHHITTVLFFGFGLWSLWDAFS 92 (229)
Q Consensus 66 lp~~~v~~~a~~lFl~fG~~~L~~~~~ 92 (229)
+.+.+++++.+++|+++|+..++.+++
T Consensus 53 ~~~st~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 53 LFGSTVRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred HcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 367899999999999999999998865
No 105
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=27.58 E-value=2.3e+02 Score=24.04 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=40.6
Q ss_pred cEeehHHHHHHHHHHHHHHHHhHHhhhh------cCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 174 FGVVLGGIIGQALCTTAAVIGGKSLASQ------ISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 174 ~~V~~G~~~a~~l~t~lav~~G~~l~~~------i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
+..+.|...+..........+.+.+... -...+++++.|++++.+|++.....
T Consensus 32 ~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 32 LAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455788888888888777777777633 3456889999999999999987654
No 106
>PRK00259 intracellular septation protein A; Reviewed
Probab=27.33 E-value=2e+02 Score=24.52 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=37.1
Q ss_pred ehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhh
Q 027038 41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (229)
Q Consensus 41 ~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~ 89 (229)
+..+..++.+.+++++....+..+.+|+. +++..++-+.||..+++-
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~~~~v~~m--~~i~~~lv~vfGglTl~l 68 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIRYRKVEKM--QLISLVVVVVFGGLTLVF 68 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHHHHHHHHh
Confidence 44456677788888888888888877765 888888888899988864
No 107
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=27.08 E-value=2.1e+02 Score=19.49 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 43 GCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 43 G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
+..-..+..+.....+|-+-...-+-+.--+..+.+|..++..++-..
T Consensus 3 ~~~~~~f~i~~~~~~iGl~~~~~~l~~KGy~~~~~l~~l~s~~tl~K~ 50 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLWNAPLDLSEKGYYAMGLLFLLFSAFTLQKT 50 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334455666777788888877766666778899999999999887543
No 108
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=26.97 E-value=1.3e+02 Score=25.71 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 027038 68 RKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 68 ~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
.++++...|.+|+.+|++++++.
T Consensus 185 ~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 185 SRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999998753
No 109
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=26.73 E-value=2.4e+02 Score=24.22 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHHccCCC---cEeehHHHHHHHHHHHHHHHHHhhhhccccHH---HHHHHHHHHHHHHHHHHhhhhh
Q 027038 21 GDKTFFAAAILAMRHPR---RLVLSGCLGALIVMTILSAVVGWVAPNLISRK---LTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 21 GDKTql~~~~LA~r~~~---~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~---~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
|.=|-=+.+.++++++. ..+..++.....+.+.+.-..+..+.+++.+. .+..+.|++-.++|+.++.++.
T Consensus 123 GPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~Gl 199 (203)
T PF01914_consen 123 GPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSGL 199 (203)
T ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456777777775 34556666666666777777788887777654 5688889999999999998875
No 110
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=26.65 E-value=1.8e+02 Score=25.07 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=38.2
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027038 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 177 ~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
+-.++..++++|++........-+++ +.++++++++-++||..+++-.
T Consensus 22 I~~AT~~livAt~i~l~~~w~~~rkv--~km~l~s~~~v~vFG~lTl~f~ 69 (180)
T COG2917 22 IYAATAVLIVATVIQLAILWIKYRKV--EKMQLISGVVVVVFGGLTLIFH 69 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhchhHhhcc
Confidence 44566677888899999888888765 4678899999999999988643
No 111
>PRK10229 threonine efflux system; Provisional
Probab=26.60 E-value=3.8e+02 Score=22.36 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=49.3
Q ss_pred cCchHHHHHHHHHcccC---CcEeehHHHHHHHHHHHHHHHHhHHhhhhcC--HHHHHHHHHHHHHHHHHHHhccc
Q 027038 156 WGDKSQLATIGLAADEN---PFGVVLGGIIGQALCTTAAVIGGKSLASQIS--EKIVALSGGVLFIVFGIQSFLSP 226 (229)
Q Consensus 156 ~GDKTQlati~LAa~~~---~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~--~~~v~~~~g~lFl~fg~~~l~~~ 226 (229)
-|. ..+.++.-+.++. .....+|...|..+-..+++.+-..+-+..| ...+++++++-.+-+|..++++.
T Consensus 19 PGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~ 93 (206)
T PRK10229 19 PGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGA 93 (206)
T ss_pred CCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355 5566666665543 3456689999999988888888777777766 34667777777777888877754
No 112
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=26.45 E-value=2.1e+02 Score=25.76 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=45.7
Q ss_pred CCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhh
Q 027038 35 HPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 35 ~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
.+++.++.|...|...|=..+=.+..++.++ .++.+.+.+.-+..|+.++.+++
T Consensus 160 ~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~---p~l~~~~~~iL~~IG~kli~~~~ 213 (254)
T COG0861 160 GHPFVMVTAVIFAILVMRFAAFLLARLLERH---PTLKYLALVILLFIGVKLILEGL 213 (254)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677899999999999999999999988654 46788888888899999998774
No 113
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=25.25 E-value=5.7e+02 Score=23.95 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhh
Q 027038 140 FSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLAS 200 (229)
Q Consensus 140 ~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~ 200 (229)
|.|.+....+.+..+-+-.+. .| .+|. -|+..++.+.+.++......+.+
T Consensus 94 FiPal~i~v~a~~~a~~~~~l-----~l---~d~~---~~tlv~lgig~i~Ali~a~~itk 143 (308)
T PF06166_consen 94 FIPALLIPVVAVIGAQLFTKL-----PL---LDPK---NGTLVGLGIGAIVALIVALIITK 143 (308)
T ss_pred hHHHHHHHHHHHHHHHHhccc-----cc---cCCC---cchHHHHHHHHHHHHHHHHHHhC
Confidence 456666666655555432222 00 1121 16666666666666666666544
No 114
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=25.07 E-value=2.4e+02 Score=24.15 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 43 GCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 43 G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
-+..++.+.|++++....+..+++|+ .++++.++=++||..+++-.
T Consensus 24 ~AT~~~~vat~~~~~~~~~~~~~v~~--m~~is~~lv~vFGglTl~~~ 69 (178)
T TIGR00997 24 AATIALLVATIIAIGLSYVKYKKVEK--MQWISFVLIVVFGGLTLIFH 69 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHHHHHHhC
Confidence 34566778888888888888886654 68888888889999988753
No 115
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=24.75 E-value=1.8e+02 Score=24.67 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=36.5
Q ss_pred cEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHH
Q 027038 174 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 221 (229)
Q Consensus 174 ~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~ 221 (229)
+.-+.|..++..+....+...|+.+.++.+.+ ..+..|......|++
T Consensus 133 ~~y~~G~~~at~~l~~~g~~~~~~~~~~~~~~-~~r~~G~~ia~~G~~ 179 (180)
T PF04955_consen 133 LLYAAGFVLATALLHAAGLALGRLLRRRWAAR-AVRAAGGAIAAAGLM 179 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHh
Confidence 34567888888888888888899988876666 777777777777764
No 116
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=24.51 E-value=2.3e+02 Score=22.59 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 027038 69 KLTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 69 ~~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
.+..++.|...+..|+..+.-++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~ 107 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGF 107 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777665443
No 117
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=24.16 E-value=2.4e+02 Score=23.80 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHh
Q 027038 178 LGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 223 (229)
Q Consensus 178 ~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l 223 (229)
.|..+.+.+.......+|+.+.+ ..++++.+.+++.+++|+..+
T Consensus 49 ~G~~~~~~~lG~~~~~~g~~~~~--~~~~~~~i~g~~~i~~Gl~~l 92 (211)
T PF02683_consen 49 LGFALVFALLGLGAGALGSFFGQ--ISPWLYIIAGVLLILFGLSLL 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666653 246788888888888888765
No 118
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=23.95 E-value=1.7e+02 Score=24.42 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhh
Q 027038 51 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 51 ~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
.+.++++.|...+...+++.+-..+-.--+.-++.|-...|
T Consensus 15 vs~~~~v~G~~~a~~~~~~~i~~~Gla~~iA~a~Sma~g~y 55 (175)
T cd02437 15 LSTLGVVFGASLAFDLDPKIIIAAGLGGAFALGISNGLGAA 55 (175)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667766655435554433333333344455554443
No 119
>PRK03699 putative transporter; Provisional
Probab=23.94 E-value=5.4e+02 Score=23.18 Aligned_cols=25 Identities=0% Similarity=-0.180 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHhhhhcCHHHHHHH
Q 027038 186 LCTTAAVIGGKSLASQISEKIVALS 210 (229)
Q Consensus 186 l~t~lav~~G~~l~~~i~~~~v~~~ 210 (229)
++..++.+.+..+.+|+++|.+-..
T Consensus 252 ~~~~ig~~~~g~l~dr~~~~~~l~~ 276 (394)
T PRK03699 252 MAYMVGMWIFSFIVRFFDLQRILTV 276 (394)
T ss_pred HHHHHHHHHHHHHHHHhchhhHHHH
Confidence 4556667777777788877655443
No 120
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=23.93 E-value=2.5e+02 Score=24.62 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhh
Q 027038 50 VMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 50 l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
+.|.++++.|..- ...++..+-..+-.--++-++.|-...|
T Consensus 14 lvt~~alvaG~ag-a~~~~~~ili~Gla~liAga~SMa~GeY 54 (225)
T cd02434 14 IVTIFAIVAGVVG-AGLSPFVILIIGFANLLADGISMAAGEY 54 (225)
T ss_pred hHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666663 3356666655555555566666666554
No 121
>TIGR00893 2A0114 d-galactonate transporter.
Probab=23.90 E-value=4.6e+02 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=8.5
Q ss_pred HHHHHHHhHHhhhhcCHH
Q 027038 188 TTAAVIGGKSLASQISEK 205 (229)
Q Consensus 188 t~lav~~G~~l~~~i~~~ 205 (229)
..++...+.++.+|+..|
T Consensus 264 ~~~~~~~~g~~~~~~~~~ 281 (399)
T TIGR00893 264 GFIGMILGGRLSDLLLRR 281 (399)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344444444455555444
No 122
>COG3817 Predicted membrane protein [Function unknown]
Probab=23.70 E-value=1.2e+02 Score=28.10 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHH
Q 027038 65 LISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIF 144 (229)
Q Consensus 65 ~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 144 (229)
.++.+++.|+.|+.|+.+++....| +..+++.-...||..+
T Consensus 2 ~~~l~~lY~l~Gi~f~~~a~~sf~d---------------------------------------ktnp~r~~t~~FW~l~ 42 (313)
T COG3817 2 MISLELLYILIGIQFLHTAVLSFKD---------------------------------------KTNPVRFGTGLFWGLF 42 (313)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccc---------------------------------------cCCCceecchHHHHHH
Q ss_pred HHHHH
Q 027038 145 LKAFS 149 (229)
Q Consensus 145 ~~af~ 149 (229)
..+|.
T Consensus 43 ~~tFl 47 (313)
T COG3817 43 SLTFL 47 (313)
T ss_pred HHHHh
No 123
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=23.56 E-value=2.2e+02 Score=24.40 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhh
Q 027038 50 VMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (229)
Q Consensus 50 l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~ 91 (229)
+.+.++++.|-.-+.. ++..+-..+-+.-+.-++.|-...|
T Consensus 13 lv~~~~lv~G~a~a~~-~~~~vl~~gla~~iAga~SMa~G~y 53 (213)
T PF01988_consen 13 LVTTFGLVAGVAGAGV-SSSVVLLAGLAGLIAGAISMAVGEY 53 (213)
T ss_pred HHHHHHHHHHHHHccc-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665554 5666555555555555665555554
No 124
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=23.31 E-value=6.9e+02 Score=24.21 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=36.5
Q ss_pred ehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027038 41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (229)
Q Consensus 41 ~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~ 90 (229)
.+|..+.++++-.+....+....+..+.+..-.++|+-+++|++-+++--
T Consensus 198 y~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~ 247 (477)
T PF11700_consen 198 YIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWL 247 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 46677777766666666555544567778888999999999999877643
No 125
>PRK09848 glucuronide transporter; Provisional
Probab=23.28 E-value=3.7e+02 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhh
Q 027038 78 LFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 110 (229)
Q Consensus 78 lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~ 110 (229)
.+++.++..++ .++- ++|+.+|.++|++++
T Consensus 415 ~~~~~~~~~~~-~y~l--~~~~~~~~~~~l~~~ 444 (448)
T PRK09848 415 GFMLLAFVIIW-FYPL--TDKKFKEIVVEIDNR 444 (448)
T ss_pred HHHHHHHHHHH-HeeC--CHHHHHHHHHHHHHh
Confidence 33445554443 2332 245566777777653
No 126
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=22.90 E-value=5.5e+02 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHhhhhcCHHHHHHHHH
Q 027038 187 CTTAAVIGGKSLASQISEKIVALSGG 212 (229)
Q Consensus 187 ~t~lav~~G~~l~~~i~~~~v~~~~g 212 (229)
...++...+.++.+|++++.+-.++.
T Consensus 256 ~~~~g~~~~g~l~~r~g~~~~l~~~~ 281 (390)
T TIGR02718 256 TVLLGCGGGAWLVRRAGLWRTFILGV 281 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445556666777887776655443
No 127
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=22.79 E-value=1.5e+02 Score=23.98 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=36.0
Q ss_pred cccHHHHHHHHHHccCCCc--EeehHHHHHHHHHHHHHHHHHhhhhcccc
Q 027038 20 IGDKTFFAAAILAMRHPRR--LVLSGCLGALIVMTILSAVVGWVAPNLIS 67 (229)
Q Consensus 20 lGDKTql~~~~LA~r~~~~--~V~~G~~~Al~l~t~lav~~G~~l~~~lp 67 (229)
+-|-|+-+++.-..+.++. ..+.|......+.-.++.++|.++.+.||
T Consensus 94 ltDe~fa~~~~~~~~~~~~~~~~~~g~~~~~~~~W~~gt~~G~~~G~~iP 143 (143)
T PF03591_consen 94 LTDESFAVAMSRFQPNPPDRHAYYLGLGLLLYLSWVLGTALGALLGNLIP 143 (143)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence 3477777766655555543 37888888888888888899988888887
No 128
>PRK03545 putative arabinose transporter; Provisional
Probab=22.69 E-value=5.6e+02 Score=22.92 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 027038 49 IVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL 87 (229)
Q Consensus 49 ~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L 87 (229)
.+...++..++..+.+..+-++.-++.+++.+...+...
T Consensus 143 ~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 143 ALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI 181 (390)
T ss_pred HHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666777777777766655544433
No 129
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=22.66 E-value=3e+02 Score=26.91 Aligned_cols=47 Identities=26% Similarity=0.395 Sum_probs=25.3
Q ss_pred cCchHHHHH-HHHHcccC---CcEeehHHHHHHHHHHH-HHHHHhHHhhhhc
Q 027038 156 WGDKSQLAT-IGLAADEN---PFGVVLGGIIGQALCTT-AAVIGGKSLASQI 202 (229)
Q Consensus 156 ~GDKTQlat-i~LAa~~~---~~~V~~G~~~a~~l~t~-lav~~G~~l~~~i 202 (229)
.|.-+-.++ +.+|.|.+ ...|..|+.+...+--. ..|+.|..+....
T Consensus 335 VgNaaEh~~AI~fA~k~kldLslgVaigsalQI~Lf~vP~~v~v~W~~g~~M 386 (441)
T KOG1397|consen 335 VGNAAEHAGAISFAMKDKLDLSLGVAIGSALQIALFVVPFSVIVGWIMGISM 386 (441)
T ss_pred cCchHHhhcceeeeecCcccchhhhhhhhhHhHHHhhhhHHHHhhhhcCCce
Confidence 444444433 34444543 25677777766655443 3566677766544
No 130
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=22.25 E-value=2.4e+02 Score=18.49 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=25.2
Q ss_pred HHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcc
Q 027038 190 AAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 225 (229)
Q Consensus 190 lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~ 225 (229)
+|...|-.+ .+-||.++++.++-.++.|+.-+..
T Consensus 3 ~aliaGiLi--Li~PrllnyiVaiyLI~~G~lgL~~ 36 (39)
T PF11295_consen 3 LALIAGILI--LIMPRLLNYIVAIYLIVIGLLGLFG 36 (39)
T ss_pred HHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555554 2458999999999999999987653
No 131
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=21.89 E-value=7.2e+02 Score=23.87 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=15.0
Q ss_pred EeehHHHHHHHHHHHHHHH
Q 027038 175 GVVLGGIIGQALCTTAAVI 193 (229)
Q Consensus 175 ~V~~G~~~a~~l~t~lav~ 193 (229)
++++|.+-|..+.-+.+-+
T Consensus 254 pklLG~~GGi~Ll~G~~~l 272 (372)
T TIGR02484 254 PVILGLVGGVAMLAGAAGL 272 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6889999998888776653
No 132
>COG1238 Predicted membrane protein [Function unknown]
Probab=20.64 E-value=5.1e+02 Score=21.73 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccH
Q 027038 6 QGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISR 68 (229)
Q Consensus 6 ~~f~~sf~~iflaElGDKTql~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~ 68 (229)
..|+.+|+--.+-=++.--.++.+.++- ++++....=+.+|..+-++..-.+|+...+.+.+
T Consensus 21 ~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 21 GLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 4566777777777777778899999888 8887777777777777777777777777665544
No 133
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=20.41 E-value=4.3e+02 Score=22.98 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=50.1
Q ss_pred ccHHHHHHHHHHccCCC-cEeehHHHHHHHHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHHHHHHHhhhhhc
Q 027038 21 GDKTFFAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAFS 92 (229)
Q Consensus 21 GDKTql~~~~LA~r~~~-~~V~~G~~~Al~l~t~lav~~G~~l~~~lp---~~~v~~~a~~lFl~fG~~~L~~~~~ 92 (229)
|+-|-=+++.++.+++. ..+...+.....+.+.+.-.....+.+++- .+.+..+.|++-.++|+.++.++.+
T Consensus 122 GPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~Gl~ 197 (203)
T COG2095 122 GPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRIMRLLGKTGLNALTRIMGLLLAALGVQMILDGLR 197 (203)
T ss_pred CcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567788888773 345555555555566666666666666664 4567888999999999999988753
No 134
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=20.21 E-value=6.4e+02 Score=22.63 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHhhhhcCHHHHHHHHHHHHH
Q 027038 187 CTTAAVIGGKSLASQISEKIVALSGGVLFI 216 (229)
Q Consensus 187 ~t~lav~~G~~l~~~i~~~~v~~~~g~lFl 216 (229)
+..+.-.....+.+|.+++.+-.++.+.+.
T Consensus 252 ~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 252 AEIIIFAFSNKLFQNCSARDLLLISAIACV 281 (382)
T ss_pred HHHHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence 333344444456677787776555544443
Done!