BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027039
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S7F|A Chain A, Riml- Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase
Crystal Form I (Apo)
Length = 199
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 36 ILENSPKSTKFPKSSCDSSHRQHLPLEKKNHRLWSSKS--WKQQVTSYAHFFKHLQGKSL 93
++E P ST + D SH L ++ W +S W Q VTS KH+QG L
Sbjct: 21 MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNIL 80
Query: 94 LFNHSK-----VLCVSAGAGHEVMAFNSI 117
L + C + AG V++FN+I
Sbjct: 81 LHQRGYAKMYLIFCQNEMAG--VLSFNAI 107
>pdb|1Z9U|A Chain A, Structural Genomics, The Crystal Structure Of The Acetyl
Transferase, Modifies N-Terminal Serine Of 50s Ribosomal
Subunit Protein L7L12 From Salmonella Typhimurium
pdb|1Z9U|B Chain B, Structural Genomics, The Crystal Structure Of The Acetyl
Transferase, Modifies N-Terminal Serine Of 50s Ribosomal
Subunit Protein L7L12 From Salmonella Typhimurium
Length = 179
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 36 ILENSPKSTKFPKSSCDSSHRQHLPLEKKNHRLWSSKS--WKQQVTSYAHFFKHLQGKSL 93
++E P ST + D SH L ++ W +S W Q VTS KH+QG L
Sbjct: 1 MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNIL 60
Query: 94 LFNHSK-----VLCVSAGAGHEVMAFNSI 117
L + C + AG V++FN+I
Sbjct: 61 LHQRGYAKMYLIFCQNEMAG--VLSFNAI 87
>pdb|1S7K|A Chain A, Riml- Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase
Crystal Form 2 (Apo)
pdb|1S7L|A Chain A, Riml- Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa-Cys134 Disulfide)
pdb|1S7N|A Chain A, Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa Free Sulfhydryl)
pdb|1S7N|B Chain B, Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa Free Sulfhydryl)
pdb|1S7N|C Chain C, Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa Free Sulfhydryl)
pdb|1S7N|D Chain D, Ribosomal L7L12 ALPHA-N-Protein Acetyltransferase In
Complex With Coenzyme A (Coa Free Sulfhydryl)
Length = 182
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 36 ILENSPKSTKFPKSSCDSSHRQHLPLEKKNHRLWSSKS--WKQQVTSYAHFFKHLQGKSL 93
++E P ST + D SH L ++ W +S W Q VTS KH+QG L
Sbjct: 4 MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNIL 63
Query: 94 LFNHSK-----VLCVSAGAGHEVMAFNSI 117
L + C + AG V++FN+I
Sbjct: 64 LHQRGYAKMYLIFCQNEMAG--VLSFNAI 90
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 99 KVLCVSAGAGHEVMAFNS-----IGV-ADVTGVELMDSLPL--------VSRADPHNLPF 144
+VL + AGAGH +AF+ IGV A VE+ S + +LPF
Sbjct: 24 RVLDIGAGAGHTALAFSPYVQECIGVDATKEXVEVASSFAQEKGVENVRFQQGTAESLPF 83
Query: 145 FDEAFDVAFTAHLAEALFPSR-FVGEMERTVKIGG 178
D++FD+ + A R V E+ R +K G
Sbjct: 84 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDG 118
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 133 LVSRADPHNLPFFDEAFDVAF-TAHLAEALFPSRFVGEMERTVKIGG---VCMVLMEECA 188
V + NLP DE+FD A + P R + E R +K GG V +V E
Sbjct: 87 FVLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL 146
Query: 189 GREIKQIVE---LFRTSRF 204
GRE ++ E ++ +RF
Sbjct: 147 GREYEKNKEKSVFYKNARF 165
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 32 PETCILENSPKSTKFPKSSCDSSHRQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGK 91
P IL SP F S + L LE +R W S+SW Q+T +G
Sbjct: 620 PAQVILPMSPNHGTFGGDGMYSESK--LSLETLFNR-WHSESWANQLTVCGAIIGWTRGT 676
Query: 92 SLLFNHSKVLCVSAGAG-----HEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFD 146
L+ ++ + G + MAFN +G+ VEL P+++ + L F
Sbjct: 677 GLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLN-GGLQFVP 735
Query: 147 EAFDVAFTAHLAEAL 161
E + FTA L + L
Sbjct: 736 ELKE--FTAKLRKEL 748
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 32 PETCILENSPKSTKFPKSSCDSSHRQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGK 91
P IL SP F S + L LE +R W S+SW Q+T +G
Sbjct: 819 PAQVILPMSPNHGTFGGDGMYSESK--LSLETLFNR-WHSESWANQLTVCGAIIGWTRGT 875
Query: 92 SLLFNHSKVLCVSAGAG-----HEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFD 146
L+ ++ + G + MAFN +G+ VEL P+++ + L F
Sbjct: 876 GLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLN-GGLQFVP 934
Query: 147 EAFDVAFTAHLAEAL 161
E + FTA L + L
Sbjct: 935 ELKE--FTAKLRKEL 947
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 32 PETCILENSPKSTKFPKSSCDSSHRQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGK 91
P IL SP F S + L LE +R W S+SW Q+T +G
Sbjct: 819 PAQVILPMSPNHGTFGGDGMYSESK--LSLETLFNR-WHSESWANQLTVCGAIIGWTRGT 875
Query: 92 SLLFNHSKVLCVSAGAG-----HEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFD 146
L+ ++ + G + MAFN +G+ VEL P+++ + L F
Sbjct: 876 GLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLN-GGLQFVP 934
Query: 147 EAFDVAFTAHLAEAL 161
E + FTA L + L
Sbjct: 935 ELKE--FTAKLRKEL 947
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,213,482
Number of Sequences: 62578
Number of extensions: 224952
Number of successful extensions: 494
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 9
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)