Query 027039
Match_columns 229
No_of_seqs 222 out of 2597
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.8 2.1E-19 4.6E-24 147.8 8.7 91 93-183 48-155 (238)
2 PLN02233 ubiquinone biosynthes 99.7 3.9E-17 8.4E-22 137.4 14.5 131 93-223 70-260 (261)
3 PF01209 Ubie_methyltran: ubiE 99.7 1.4E-17 2.9E-22 137.8 8.0 90 94-183 45-152 (233)
4 PF08241 Methyltransf_11: Meth 99.7 3E-17 6.5E-22 116.0 7.1 82 101-182 1-95 (95)
5 PRK00107 gidB 16S rRNA methylt 99.7 7.4E-16 1.6E-20 123.3 14.0 127 93-226 42-186 (187)
6 PRK14103 trans-aconitate 2-met 99.7 5.3E-16 1.2E-20 130.0 12.4 116 69-185 2-127 (255)
7 TIGR02752 MenG_heptapren 2-hep 99.7 2.1E-15 4.5E-20 124.4 14.9 132 93-224 42-231 (231)
8 PLN02244 tocopherol O-methyltr 99.7 1.5E-15 3.4E-20 132.3 14.2 89 95-184 117-223 (340)
9 PF13489 Methyltransf_23: Meth 99.7 6.7E-16 1.5E-20 119.6 9.7 93 94-187 20-118 (161)
10 PRK10258 biotin biosynthesis p 99.6 2.4E-15 5.2E-20 125.7 12.8 91 95-186 41-142 (251)
11 PLN02396 hexaprenyldihydroxybe 99.6 1E-15 2.2E-20 132.0 10.5 90 95-185 130-236 (322)
12 COG2227 UbiG 2-polyprenyl-3-me 99.6 2.9E-16 6.3E-21 127.7 5.2 92 95-187 58-164 (243)
13 PRK15068 tRNA mo(5)U34 methylt 99.6 1.4E-14 3E-19 125.4 13.6 116 95-211 121-274 (322)
14 PRK05785 hypothetical protein; 99.6 1.3E-14 2.9E-19 119.5 11.6 83 95-177 50-140 (226)
15 TIGR00138 gidB 16S rRNA methyl 99.6 2.8E-14 6E-19 113.8 13.0 114 96-213 42-173 (181)
16 PRK11036 putative S-adenosyl-L 99.6 2.2E-14 4.7E-19 120.3 12.8 91 95-186 43-151 (255)
17 PRK01683 trans-aconitate 2-met 99.6 1.2E-14 2.6E-19 121.9 11.1 100 85-185 20-131 (258)
18 TIGR00452 methyltransferase, p 99.6 2.5E-14 5.4E-19 123.0 13.0 118 94-212 119-274 (314)
19 PTZ00098 phosphoethanolamine N 99.6 4.7E-14 1E-18 118.9 13.1 92 92-184 48-156 (263)
20 PF13847 Methyltransf_31: Meth 99.6 1.5E-14 3.2E-19 112.0 9.2 91 95-186 2-112 (152)
21 PRK11207 tellurite resistance 99.6 4.7E-14 1E-18 114.0 12.2 111 95-207 29-168 (197)
22 PLN02490 MPBQ/MSBQ methyltrans 99.6 4.4E-14 9.5E-19 122.4 12.1 117 95-211 112-256 (340)
23 PF12847 Methyltransf_18: Meth 99.5 2.2E-14 4.8E-19 104.8 7.2 88 96-184 1-111 (112)
24 KOG1540 Ubiquinone biosynthesi 99.5 4.4E-14 9.6E-19 115.4 9.6 93 93-186 97-215 (296)
25 PLN02336 phosphoethanolamine N 99.5 9.7E-14 2.1E-18 126.2 13.0 91 93-184 263-369 (475)
26 PF03848 TehB: Tellurite resis 99.5 1.2E-13 2.6E-18 110.4 11.7 113 95-209 29-169 (192)
27 PRK11873 arsM arsenite S-adeno 99.5 8.3E-14 1.8E-18 117.8 11.3 116 93-208 74-227 (272)
28 TIGR00477 tehB tellurite resis 99.5 1.4E-13 3.1E-18 111.0 11.5 112 95-208 29-168 (195)
29 TIGR02072 BioC biotin biosynth 99.5 2.6E-13 5.7E-18 111.7 13.1 92 95-186 33-137 (240)
30 PRK08317 hypothetical protein; 99.5 3.1E-13 6.6E-18 111.2 13.3 93 92-184 15-124 (241)
31 PF08003 Methyltransf_9: Prote 99.5 1.5E-13 3.2E-18 115.8 11.4 116 96-212 115-268 (315)
32 PRK00216 ubiE ubiquinone/menaq 99.5 7.4E-13 1.6E-17 109.1 15.6 131 94-224 49-238 (239)
33 KOG1270 Methyltransferases [Co 99.5 1.5E-14 3.2E-19 118.7 4.9 87 97-187 90-198 (282)
34 PRK11188 rrmJ 23S rRNA methylt 99.5 3.9E-13 8.5E-18 109.6 12.8 105 92-198 47-177 (209)
35 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 9.6E-13 2.1E-17 107.4 14.7 129 95-223 38-222 (223)
36 KOG4300 Predicted methyltransf 99.5 1.1E-13 2.4E-18 109.8 8.7 95 97-191 77-189 (252)
37 TIGR03840 TMPT_Se_Te thiopurin 99.5 6.4E-13 1.4E-17 108.5 13.3 116 95-211 33-189 (213)
38 PRK12335 tellurite resistance 99.5 3.8E-13 8.3E-18 114.7 11.6 112 96-209 120-259 (287)
39 PF08242 Methyltransf_12: Meth 99.5 5.5E-14 1.2E-18 100.8 5.4 80 101-180 1-99 (99)
40 PRK13255 thiopurine S-methyltr 99.5 1.3E-12 2.8E-17 107.1 13.6 121 94-215 35-196 (218)
41 PF07021 MetW: Methionine bios 99.5 5.9E-13 1.3E-17 105.4 10.9 119 94-216 11-172 (193)
42 PF02353 CMAS: Mycolic acid cy 99.5 2.7E-13 5.9E-18 114.6 8.9 102 81-186 47-168 (273)
43 smart00828 PKS_MT Methyltransf 99.4 1.3E-12 2.9E-17 107.2 11.6 112 98-210 1-143 (224)
44 TIGR03587 Pse_Me-ase pseudamin 99.4 1.4E-12 2.9E-17 106.0 10.8 85 94-181 41-139 (204)
45 PRK11088 rrmA 23S rRNA methylt 99.4 1.2E-12 2.6E-17 110.8 10.9 96 95-198 84-193 (272)
46 PF05175 MTS: Methyltransferas 99.4 2.5E-12 5.5E-17 101.5 11.2 109 96-206 31-161 (170)
47 PRK00121 trmB tRNA (guanine-N( 99.4 4.5E-13 9.7E-18 108.7 6.9 109 95-205 39-175 (202)
48 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.4E-12 3E-17 109.0 9.4 89 94-184 54-164 (247)
49 COG2230 Cfa Cyclopropane fatty 99.4 2.3E-12 5.1E-17 108.2 10.4 98 85-186 61-178 (283)
50 PRK08287 cobalt-precorrin-6Y C 99.4 9.8E-12 2.1E-16 99.5 13.1 110 93-208 28-153 (187)
51 COG4106 Tam Trans-aconitate me 99.4 1.2E-12 2.5E-17 104.8 7.2 99 87-186 21-131 (257)
52 PF05148 Methyltransf_8: Hypot 99.4 7.7E-12 1.7E-16 100.1 11.5 114 95-210 71-184 (219)
53 KOG1271 Methyltransferases [Ge 99.4 9.2E-12 2E-16 97.2 11.5 127 95-224 65-226 (227)
54 TIGR02469 CbiT precorrin-6Y C5 99.4 6.3E-12 1.4E-16 93.1 10.0 90 93-184 16-122 (124)
55 PF13649 Methyltransf_25: Meth 99.4 6.1E-13 1.3E-17 95.8 4.4 79 100-178 1-101 (101)
56 TIGR00438 rrmJ cell division p 99.4 2.1E-11 4.6E-16 97.6 13.7 108 92-201 28-161 (188)
57 PRK06922 hypothetical protein; 99.4 2.2E-12 4.8E-17 118.9 9.0 90 95-184 417-537 (677)
58 PRK14967 putative methyltransf 99.4 7.2E-12 1.6E-16 103.0 11.2 109 93-204 33-177 (223)
59 PRK04266 fibrillarin; Provisio 99.4 2E-11 4.4E-16 100.5 13.5 120 92-213 68-212 (226)
60 smart00138 MeTrc Methyltransfe 99.3 4.8E-12 1E-16 106.7 9.8 104 83-186 86-244 (264)
61 TIGR00740 methyltransferase, p 99.3 3.2E-12 6.9E-17 106.2 8.3 88 94-183 51-160 (239)
62 PRK11705 cyclopropane fatty ac 99.3 5.3E-12 1.2E-16 111.7 10.1 95 86-184 157-267 (383)
63 PRK14966 unknown domain/N5-glu 99.3 1.4E-11 3E-16 108.9 12.6 129 95-226 250-420 (423)
64 COG4123 Predicted O-methyltran 99.3 1.6E-11 3.4E-16 101.5 11.9 129 95-226 43-212 (248)
65 PTZ00146 fibrillarin; Provisio 99.3 3.3E-11 7.3E-16 101.9 14.1 119 92-212 128-272 (293)
66 TIGR00537 hemK_rel_arch HemK-r 99.3 2.5E-11 5.5E-16 96.4 12.5 106 95-205 18-159 (179)
67 TIGR00406 prmA ribosomal prote 99.3 8E-12 1.7E-16 106.7 10.0 106 95-207 158-279 (288)
68 KOG1541 Predicted protein carb 99.3 1E-11 2.2E-16 99.6 9.6 117 96-213 50-189 (270)
69 PLN02336 phosphoethanolamine N 99.3 1.5E-11 3.3E-16 111.8 12.0 112 95-207 36-178 (475)
70 TIGR00091 tRNA (guanine-N(7)-) 99.3 4.2E-12 9.1E-17 102.3 7.4 111 95-207 15-154 (194)
71 COG2264 PrmA Ribosomal protein 99.3 1.1E-11 2.4E-16 105.0 10.2 116 94-215 160-292 (300)
72 PRK00517 prmA ribosomal protei 99.3 1.1E-11 2.4E-16 103.7 10.1 119 94-216 117-243 (250)
73 TIGR02081 metW methionine bios 99.3 2.3E-11 5.1E-16 97.9 11.3 115 95-212 12-168 (194)
74 TIGR00536 hemK_fam HemK family 99.3 2.7E-11 5.9E-16 103.2 12.3 123 98-224 116-282 (284)
75 PF06325 PrmA: Ribosomal prote 99.3 3.2E-11 6.9E-16 102.8 12.6 116 94-216 159-288 (295)
76 PRK00377 cbiT cobalt-precorrin 99.3 3.4E-11 7.3E-16 97.3 12.1 109 92-204 36-163 (198)
77 PRK13944 protein-L-isoaspartat 99.3 1.9E-11 4E-16 99.4 10.4 89 93-186 69-175 (205)
78 PRK09328 N5-glutamine S-adenos 99.3 4.7E-11 1E-15 100.9 13.2 126 94-223 106-274 (275)
79 PRK05134 bifunctional 3-demeth 99.3 3.1E-11 6.8E-16 99.6 11.1 91 94-185 46-152 (233)
80 PRK14968 putative methyltransf 99.3 6.8E-11 1.5E-15 94.0 12.5 109 95-207 22-169 (188)
81 PRK13942 protein-L-isoaspartat 99.3 2.1E-11 4.5E-16 99.6 9.5 92 89-185 69-177 (212)
82 TIGR03534 RF_mod_PrmC protein- 99.3 2.8E-11 6E-16 100.7 10.5 119 96-218 87-248 (251)
83 PRK09489 rsmC 16S ribosomal RN 99.3 2.5E-11 5.4E-16 105.8 10.2 107 96-205 196-323 (342)
84 PRK15001 SAM-dependent 23S rib 99.3 3.7E-11 8E-16 105.7 11.3 106 97-204 229-359 (378)
85 PRK13256 thiopurine S-methyltr 99.3 7.3E-11 1.6E-15 96.8 11.6 114 94-208 41-196 (226)
86 TIGR01177 conserved hypothetic 99.3 9.6E-11 2.1E-15 101.8 12.8 107 92-204 178-309 (329)
87 COG2242 CobL Precorrin-6B meth 99.2 2.2E-10 4.8E-15 90.3 12.5 113 91-209 29-158 (187)
88 PF13659 Methyltransf_26: Meth 99.2 8.9E-12 1.9E-16 91.7 4.2 89 97-185 1-116 (117)
89 PRK07402 precorrin-6B methylas 99.2 1.5E-10 3.3E-15 93.3 11.6 103 93-200 37-156 (196)
90 TIGR02716 C20_methyl_CrtF C-20 99.2 1.3E-10 2.8E-15 100.0 11.6 94 88-183 141-253 (306)
91 TIGR01983 UbiG ubiquinone bios 99.2 1.4E-10 3.1E-15 95.0 10.9 89 96-185 45-150 (224)
92 TIGR00080 pimt protein-L-isoas 99.2 1E-10 2.2E-15 95.7 9.9 89 93-186 74-179 (215)
93 PF05401 NodS: Nodulation prot 99.2 5.9E-10 1.3E-14 88.7 13.7 118 96-216 43-184 (201)
94 KOG3045 Predicted RNA methylas 99.2 1.3E-10 2.9E-15 95.3 9.5 111 95-209 179-289 (325)
95 KOG3010 Methyltransferase [Gen 99.2 8.8E-11 1.9E-15 95.5 7.4 89 98-187 35-139 (261)
96 COG2890 HemK Methylase of poly 99.2 4.9E-10 1.1E-14 95.2 12.3 122 99-225 113-277 (280)
97 PF05724 TPMT: Thiopurine S-me 99.2 1.9E-10 4.2E-15 94.2 9.2 117 93-210 34-191 (218)
98 PLN03075 nicotianamine synthas 99.1 8.4E-10 1.8E-14 93.8 13.1 90 95-184 122-233 (296)
99 PRK01544 bifunctional N5-gluta 99.1 3.3E-10 7.2E-15 103.7 11.4 122 96-221 138-303 (506)
100 TIGR03533 L3_gln_methyl protei 99.1 2.9E-10 6.2E-15 96.9 10.2 105 95-204 120-267 (284)
101 PRK06202 hypothetical protein; 99.1 1.4E-10 3E-15 95.9 8.1 81 95-175 59-159 (232)
102 COG2813 RsmC 16S RNA G1207 met 99.1 5E-10 1.1E-14 94.6 11.2 108 95-205 157-286 (300)
103 PF08704 GCD14: tRNA methyltra 99.1 2.6E-10 5.7E-15 94.8 8.6 120 87-212 31-172 (247)
104 PRK14121 tRNA (guanine-N(7)-)- 99.1 2.5E-10 5.4E-15 100.3 8.8 92 95-186 121-237 (390)
105 COG2519 GCD14 tRNA(1-methylade 99.1 4.8E-10 1E-14 92.2 9.4 117 89-212 87-221 (256)
106 TIGR02021 BchM-ChlM magnesium 99.1 4.6E-10 1E-14 91.9 9.1 84 94-181 53-155 (219)
107 PRK00312 pcm protein-L-isoaspa 99.1 7E-10 1.5E-14 90.4 10.1 87 93-185 75-176 (212)
108 cd02440 AdoMet_MTases S-adenos 99.1 5.7E-10 1.2E-14 78.5 7.8 85 99-183 1-103 (107)
109 TIGR03438 probable methyltrans 99.1 1.2E-09 2.7E-14 93.8 10.9 93 95-187 62-180 (301)
110 TIGR03704 PrmC_rel_meth putati 99.1 1.8E-09 3.8E-14 90.5 11.6 110 96-208 86-237 (251)
111 PRK11805 N5-glutamine S-adenos 99.1 8.3E-10 1.8E-14 95.0 9.8 104 98-206 135-281 (307)
112 COG2521 Predicted archaeal met 99.1 1.5E-09 3.2E-14 88.1 10.4 120 95-214 133-280 (287)
113 PF03141 Methyltransf_29: Puta 99.0 4.5E-10 9.9E-15 100.1 6.6 88 98-186 119-221 (506)
114 COG2518 Pcm Protein-L-isoaspar 99.0 1.5E-09 3.2E-14 87.4 8.9 94 87-186 63-171 (209)
115 COG4976 Predicted methyltransf 99.0 1.6E-10 3.6E-15 93.3 3.2 116 92-208 121-262 (287)
116 PF01135 PCMT: Protein-L-isoas 99.0 6E-10 1.3E-14 90.6 6.6 93 89-186 65-174 (209)
117 PRK07580 Mg-protoporphyrin IX 99.0 5.4E-09 1.2E-13 85.9 11.6 82 94-179 61-161 (230)
118 PF05219 DREV: DREV methyltran 99.0 1.7E-09 3.6E-14 89.5 8.1 88 96-184 94-188 (265)
119 PF02527 GidB: rRNA small subu 99.0 7E-09 1.5E-13 82.7 11.3 116 83-202 34-166 (184)
120 PF06080 DUF938: Protein of un 99.0 1.3E-08 2.8E-13 81.8 12.4 129 95-224 23-204 (204)
121 PRK04457 spermidine synthase; 99.0 4.3E-09 9.4E-14 88.7 9.9 92 95-186 65-179 (262)
122 PLN02585 magnesium protoporphy 98.9 3.2E-09 6.8E-14 91.6 8.5 81 96-181 144-247 (315)
123 PRK00811 spermidine synthase; 98.9 6.8E-09 1.5E-13 88.4 10.3 91 95-185 75-192 (283)
124 PRK13943 protein-L-isoaspartat 98.9 5.7E-09 1.2E-13 90.2 9.9 89 93-186 77-182 (322)
125 PRK14904 16S rRNA methyltransf 98.9 5.4E-09 1.2E-13 94.4 10.0 93 94-187 248-380 (445)
126 PRK14901 16S rRNA methyltransf 98.9 5.8E-09 1.3E-13 94.0 10.1 107 94-200 250-401 (434)
127 KOG2361 Predicted methyltransf 98.9 4.7E-09 1E-13 85.6 8.1 85 99-183 74-182 (264)
128 TIGR00446 nop2p NOL1/NOP2/sun 98.9 4.6E-09 1E-13 88.6 8.4 93 94-186 69-201 (264)
129 PRK14903 16S rRNA methyltransf 98.9 4.8E-09 1E-13 94.3 8.9 96 93-188 234-370 (431)
130 PRK10901 16S rRNA methyltransf 98.9 7.4E-09 1.6E-13 93.1 9.7 107 94-200 242-389 (427)
131 PHA03411 putative methyltransf 98.9 1.1E-08 2.5E-13 85.8 9.9 111 95-206 63-209 (279)
132 TIGR00563 rsmB ribosomal RNA s 98.9 6.5E-09 1.4E-13 93.4 8.8 94 94-187 236-371 (426)
133 COG0357 GidB Predicted S-adeno 98.9 3.5E-08 7.5E-13 80.2 11.2 121 97-221 68-207 (215)
134 smart00650 rADc Ribosomal RNA 98.8 7.3E-09 1.6E-13 81.5 6.8 90 93-185 10-114 (169)
135 PF02390 Methyltransf_4: Putat 98.8 1.2E-08 2.5E-13 82.3 7.3 108 98-207 19-156 (195)
136 PRK14902 16S rRNA methyltransf 98.8 2.3E-08 5E-13 90.4 9.6 92 94-186 248-381 (444)
137 KOG2904 Predicted methyltransf 98.8 1.1E-07 2.4E-12 78.9 12.6 93 95-187 147-288 (328)
138 PF01739 CheR: CheR methyltran 98.8 1.5E-08 3.3E-13 81.6 6.7 92 95-186 30-177 (196)
139 PLN02232 ubiquinone biosynthes 98.8 1.4E-08 3.1E-13 79.2 6.3 53 131-183 27-80 (160)
140 PRK03612 spermidine synthase; 98.8 3.2E-08 6.9E-13 91.1 9.3 110 95-204 296-437 (521)
141 PRK15128 23S rRNA m(5)C1962 me 98.8 3.1E-08 6.8E-13 88.0 8.8 104 95-199 219-353 (396)
142 PF03291 Pox_MCEL: mRNA cappin 98.8 5.7E-08 1.2E-12 84.3 10.1 91 96-186 62-188 (331)
143 PF00891 Methyltransf_2: O-met 98.8 7.2E-08 1.6E-12 80.1 10.2 91 91-184 95-199 (241)
144 PLN02672 methionine S-methyltr 98.8 3.9E-08 8.4E-13 96.1 9.8 110 97-209 119-301 (1082)
145 PHA03412 putative methyltransf 98.7 2E-08 4.4E-13 82.5 6.4 83 96-179 49-158 (241)
146 TIGR00417 speE spermidine synt 98.7 6.9E-08 1.5E-12 81.7 9.8 91 95-185 71-187 (270)
147 COG0293 FtsJ 23S rRNA methylas 98.7 3.2E-07 6.9E-12 73.8 13.0 118 92-209 41-186 (205)
148 KOG1499 Protein arginine N-met 98.7 2.5E-08 5.4E-13 85.5 6.9 90 92-181 56-164 (346)
149 PLN02781 Probable caffeoyl-CoA 98.7 6.7E-08 1.5E-12 80.1 9.1 86 95-182 67-176 (234)
150 KOG2899 Predicted methyltransf 98.7 2E-08 4.4E-13 81.9 5.7 89 95-183 57-208 (288)
151 PF07942 N2227: N2227-like pro 98.7 2.4E-07 5.1E-12 77.9 11.9 142 67-210 23-241 (270)
152 PLN02366 spermidine synthase 98.7 1.2E-07 2.5E-12 81.7 9.3 90 95-184 90-206 (308)
153 PRK11783 rlmL 23S rRNA m(2)G24 98.7 9.9E-08 2.2E-12 90.8 9.0 92 95-186 537-658 (702)
154 PF10294 Methyltransf_16: Puta 98.6 2E-07 4.3E-12 73.8 9.0 106 93-199 42-170 (173)
155 KOG2940 Predicted methyltransf 98.6 3.6E-08 7.9E-13 79.9 4.7 100 95-196 71-184 (325)
156 PRK01581 speE spermidine synth 98.6 6.3E-08 1.4E-12 84.4 6.5 91 95-185 149-269 (374)
157 COG1041 Predicted DNA modifica 98.6 4.7E-07 1E-11 78.0 11.2 97 88-185 189-311 (347)
158 PF11968 DUF3321: Putative met 98.6 1.1E-06 2.3E-11 71.1 12.4 124 97-224 52-192 (219)
159 KOG1975 mRNA cap methyltransfe 98.6 1.2E-07 2.5E-12 80.5 7.0 94 93-186 114-239 (389)
160 PRK10611 chemotaxis methyltran 98.6 1.7E-07 3.7E-12 79.7 7.5 90 97-186 116-264 (287)
161 PRK10909 rsmD 16S rRNA m(2)G96 98.6 3.3E-07 7.1E-12 74.1 8.5 92 95-186 52-161 (199)
162 PRK13168 rumA 23S rRNA m(5)U19 98.5 5.3E-07 1.1E-11 81.5 10.0 115 93-213 294-428 (443)
163 COG1352 CheR Methylase of chem 98.5 9.2E-07 2E-11 74.4 9.6 91 96-186 96-243 (268)
164 PF05891 Methyltransf_PK: AdoM 98.5 6.4E-07 1.4E-11 72.5 8.3 119 96-215 55-205 (218)
165 TIGR00478 tly hemolysin TlyA f 98.5 5.5E-07 1.2E-11 74.2 7.9 83 95-185 74-172 (228)
166 PRK03522 rumB 23S rRNA methylu 98.5 7.6E-07 1.7E-11 77.0 9.2 111 96-212 173-299 (315)
167 PF01728 FtsJ: FtsJ-like methy 98.5 1.1E-06 2.4E-11 69.8 8.7 91 96-186 23-141 (181)
168 COG0220 Predicted S-adenosylme 98.4 3.9E-07 8.4E-12 75.0 5.9 89 98-186 50-166 (227)
169 PF01596 Methyltransf_3: O-met 98.4 7.1E-07 1.5E-11 72.5 7.1 86 95-182 44-153 (205)
170 PLN02476 O-methyltransferase 98.4 7.7E-07 1.7E-11 75.3 7.5 86 95-182 117-226 (278)
171 PRK14896 ksgA 16S ribosomal RN 98.4 6.9E-07 1.5E-11 75.1 7.1 60 93-155 26-98 (258)
172 PRK00274 ksgA 16S ribosomal RN 98.4 5.4E-07 1.2E-11 76.3 6.5 62 93-155 39-112 (272)
173 KOG1661 Protein-L-isoaspartate 98.4 8.3E-07 1.8E-11 71.1 6.9 100 80-186 68-195 (237)
174 KOG4589 Cell division protein 98.4 5.7E-06 1.2E-10 65.3 11.4 118 91-208 64-210 (232)
175 PRK11727 23S rRNA mA1618 methy 98.4 5.5E-06 1.2E-10 71.6 11.8 125 96-222 114-304 (321)
176 PF01170 UPF0020: Putative RNA 98.4 1.8E-06 4E-11 68.6 8.0 111 90-207 22-167 (179)
177 PF05185 PRMT5: PRMT5 arginine 98.4 1.6E-06 3.6E-11 78.2 8.6 84 97-181 187-294 (448)
178 KOG1500 Protein arginine N-met 98.4 1.2E-06 2.5E-11 74.9 7.1 89 95-184 176-282 (517)
179 KOG3191 Predicted N6-DNA-methy 98.4 7E-06 1.5E-10 64.5 10.8 112 96-210 43-192 (209)
180 COG4122 Predicted O-methyltran 98.4 1.8E-06 3.9E-11 70.4 7.8 86 95-182 58-164 (219)
181 TIGR00479 rumA 23S rRNA (uraci 98.3 1.9E-06 4.1E-11 77.7 8.8 87 93-182 289-394 (431)
182 PRK11760 putative 23S rRNA C24 98.3 2.3E-05 4.9E-10 67.8 14.7 125 93-221 208-352 (357)
183 PRK04148 hypothetical protein; 98.3 1.6E-06 3.5E-11 65.3 6.8 87 95-188 15-112 (134)
184 PF01269 Fibrillarin: Fibrilla 98.3 6.2E-06 1.3E-10 67.0 10.1 151 73-224 50-227 (229)
185 KOG1269 SAM-dependent methyltr 98.3 7.4E-07 1.6E-11 78.2 4.6 89 93-181 107-212 (364)
186 TIGR00755 ksgA dimethyladenosi 98.3 5.1E-06 1.1E-10 69.6 9.5 60 93-155 26-101 (253)
187 PLN02823 spermine synthase 98.3 2.2E-06 4.7E-11 74.6 7.3 91 95-185 102-221 (336)
188 PRK11933 yebU rRNA (cytosine-C 98.3 6.1E-06 1.3E-10 74.9 10.4 94 93-186 110-244 (470)
189 PRK01544 bifunctional N5-gluta 98.3 1.5E-06 3.3E-11 79.7 6.4 107 95-203 346-479 (506)
190 COG2263 Predicted RNA methylas 98.3 1.4E-06 3E-11 69.0 5.3 58 95-155 44-115 (198)
191 COG3963 Phospholipid N-methylt 98.3 6.1E-06 1.3E-10 64.0 8.4 100 87-186 39-158 (194)
192 TIGR02085 meth_trns_rumB 23S r 98.2 6.1E-06 1.3E-10 73.1 8.6 111 96-212 233-359 (374)
193 TIGR00095 RNA methyltransferas 98.2 1.6E-05 3.4E-10 63.8 9.3 90 96-185 49-160 (189)
194 KOG2915 tRNA(1-methyladenosine 98.2 6.5E-06 1.4E-10 68.5 7.1 118 92-214 101-238 (314)
195 KOG1331 Predicted methyltransf 98.1 4.9E-06 1.1E-10 69.7 6.2 89 95-186 44-145 (293)
196 PF03141 Methyltransf_29: Puta 98.1 2.4E-05 5.1E-10 70.4 10.8 139 72-216 344-496 (506)
197 PTZ00338 dimethyladenosine tra 98.1 4E-06 8.8E-11 71.8 5.7 65 88-155 28-108 (294)
198 KOG2352 Predicted spermine/spe 98.1 1.6E-05 3.4E-10 71.2 9.6 91 95-185 46-162 (482)
199 PLN02589 caffeoyl-CoA O-methyl 98.1 7.4E-06 1.6E-10 68.4 7.0 86 95-182 78-188 (247)
200 PF08123 DOT1: Histone methyla 98.1 2.4E-06 5.2E-11 69.3 3.8 90 92-181 38-155 (205)
201 COG2520 Predicted methyltransf 98.1 3.4E-05 7.4E-10 67.0 10.9 120 95-217 187-330 (341)
202 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 1.5E-05 3.2E-10 66.7 7.6 109 96-205 56-233 (256)
203 PF02475 Met_10: Met-10+ like- 98.0 3.4E-06 7.3E-11 68.2 3.2 83 94-180 99-198 (200)
204 PRK04338 N(2),N(2)-dimethylgua 98.0 7.4E-06 1.6E-10 72.6 5.4 85 97-184 58-158 (382)
205 PF01564 Spermine_synth: Sperm 98.0 5.2E-05 1.1E-09 63.4 10.1 92 95-186 75-193 (246)
206 COG0030 KsgA Dimethyladenosine 98.0 1.4E-05 3E-10 66.8 6.5 70 85-155 19-102 (259)
207 KOG0820 Ribosomal RNA adenine 98.0 2.2E-05 4.8E-10 65.4 7.4 71 82-155 44-130 (315)
208 COG0421 SpeE Spermidine syntha 98.0 3.9E-05 8.4E-10 65.2 9.1 86 98-183 78-189 (282)
209 COG1092 Predicted SAM-dependen 98.0 1.5E-05 3.3E-10 70.5 6.4 92 96-187 217-339 (393)
210 COG0500 SmtA SAM-dependent met 97.9 7.1E-05 1.5E-09 55.4 8.5 88 100-188 52-159 (257)
211 PF02384 N6_Mtase: N-6 DNA Met 97.9 0.00015 3.2E-09 62.5 10.6 119 93-211 43-214 (311)
212 PF03602 Cons_hypoth95: Conser 97.8 1.5E-05 3.3E-10 63.6 3.7 93 95-187 41-156 (183)
213 COG3897 Predicted methyltransf 97.8 0.00012 2.5E-09 58.4 8.4 102 89-194 72-188 (218)
214 KOG1709 Guanidinoacetate methy 97.8 8.3E-05 1.8E-09 60.1 7.5 94 95-188 100-210 (271)
215 KOG3420 Predicted RNA methylas 97.8 1.5E-05 3.3E-10 60.5 3.0 60 96-155 48-121 (185)
216 PF10672 Methyltrans_SAM: S-ad 97.8 5.7E-05 1.2E-09 64.3 6.9 105 95-200 122-253 (286)
217 COG1889 NOP1 Fibrillarin-like 97.8 0.00049 1.1E-08 55.1 11.5 95 92-187 72-183 (231)
218 PRK00536 speE spermidine synth 97.8 0.00012 2.5E-09 61.6 8.4 82 95-184 71-171 (262)
219 PF12147 Methyltransf_20: Puta 97.8 0.00045 9.8E-09 58.4 11.3 114 95-209 134-296 (311)
220 KOG3987 Uncharacterized conser 97.7 4.8E-06 1E-10 66.8 -0.8 88 95-183 111-206 (288)
221 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00033 7.1E-09 67.0 11.4 100 87-186 180-349 (702)
222 KOG1663 O-methyltransferase [S 97.7 0.0003 6.6E-09 57.4 9.4 86 95-182 72-181 (237)
223 PF09243 Rsm22: Mitochondrial 97.7 0.00017 3.6E-09 61.3 7.9 105 82-191 19-145 (274)
224 COG0144 Sun tRNA and rRNA cyto 97.7 0.00038 8.3E-09 61.2 9.9 112 93-204 153-309 (355)
225 COG1189 Predicted rRNA methyla 97.6 0.001 2.2E-08 54.7 10.8 90 93-186 76-180 (245)
226 TIGR00308 TRM1 tRNA(guanine-26 97.6 8E-05 1.7E-09 65.8 4.6 84 97-183 45-146 (374)
227 COG0742 N6-adenine-specific me 97.5 0.00029 6.4E-09 56.0 6.7 92 95-186 42-156 (187)
228 PF13679 Methyltransf_32: Meth 97.5 0.001 2.2E-08 50.7 9.3 105 79-188 7-135 (141)
229 TIGR02143 trmA_only tRNA (urac 97.5 0.00078 1.7E-08 59.2 9.5 108 98-212 199-337 (353)
230 PRK05031 tRNA (uracil-5-)-meth 97.4 0.00092 2E-08 59.0 9.3 109 97-212 207-346 (362)
231 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00029 6.2E-09 59.4 5.8 81 93-176 27-123 (262)
232 TIGR02987 met_A_Alw26 type II 97.4 0.00078 1.7E-08 62.3 8.7 116 96-211 31-226 (524)
233 COG4627 Uncharacterized protei 97.3 0.00017 3.8E-09 55.3 3.2 46 141-186 40-88 (185)
234 COG4076 Predicted RNA methylas 97.3 0.00078 1.7E-08 53.5 6.6 82 97-181 33-132 (252)
235 COG4798 Predicted methyltransf 97.3 0.00098 2.1E-08 53.2 6.7 91 92-183 44-165 (238)
236 PF09445 Methyltransf_15: RNA 97.2 0.00093 2E-08 52.2 6.3 112 99-216 2-153 (163)
237 TIGR03439 methyl_EasF probable 97.2 0.0039 8.5E-08 54.0 10.7 94 95-188 75-201 (319)
238 COG4262 Predicted spermidine s 97.2 0.0008 1.7E-08 58.5 6.1 91 95-185 288-408 (508)
239 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.00025 5.4E-09 60.5 3.0 93 94-186 83-221 (283)
240 KOG2798 Putative trehalase [Ca 97.2 0.00062 1.4E-08 58.0 5.2 142 67-210 117-336 (369)
241 KOG1596 Fibrillarin and relate 97.2 0.0023 5.1E-08 52.7 8.0 97 90-187 150-264 (317)
242 KOG3201 Uncharacterized conser 97.2 0.00017 3.6E-09 55.9 1.3 111 96-207 29-162 (201)
243 PRK00050 16S rRNA m(4)C1402 me 97.0 0.00081 1.8E-08 57.6 4.4 63 93-155 16-97 (296)
244 KOG3178 Hydroxyindole-O-methyl 97.0 0.0042 9E-08 53.8 8.7 85 95-183 176-274 (342)
245 KOG1099 SAM-dependent methyltr 96.9 0.0027 5.9E-08 51.9 6.2 114 95-208 40-189 (294)
246 PF13578 Methyltransf_24: Meth 96.9 0.0004 8.6E-09 50.0 1.1 82 101-182 1-103 (106)
247 PF05958 tRNA_U5-meth_tr: tRNA 96.8 0.016 3.4E-07 51.0 11.0 110 95-212 196-336 (352)
248 COG0116 Predicted N6-adenine-s 96.8 0.0078 1.7E-07 53.0 8.5 101 86-186 181-346 (381)
249 KOG2793 Putative N2,N2-dimethy 96.8 0.016 3.4E-07 48.3 10.0 93 96-188 86-203 (248)
250 KOG3115 Methyltransferase-like 96.7 0.0059 1.3E-07 49.1 6.4 93 95-187 59-186 (249)
251 PF03269 DUF268: Caenorhabditi 96.6 0.0048 1E-07 47.8 5.1 112 97-209 2-145 (177)
252 PF03059 NAS: Nicotianamine sy 96.5 0.023 4.9E-07 48.2 9.3 88 96-183 120-229 (276)
253 PF04816 DUF633: Family of unk 96.5 0.048 1E-06 44.3 10.8 121 100-226 1-141 (205)
254 KOG1122 tRNA and rRNA cytosine 96.4 0.017 3.6E-07 51.3 8.1 115 94-209 239-397 (460)
255 PF04672 Methyltransf_19: S-ad 96.1 0.036 7.9E-07 46.6 8.3 102 98-200 70-208 (267)
256 KOG2920 Predicted methyltransf 96.0 0.0089 1.9E-07 50.4 4.2 93 92-184 112-234 (282)
257 PF04989 CmcI: Cephalosporin h 95.9 0.094 2E-06 42.5 9.7 98 78-182 21-145 (206)
258 COG2265 TrmA SAM-dependent met 95.9 0.017 3.6E-07 52.2 5.9 62 93-155 290-369 (432)
259 PF11312 DUF3115: Protein of u 95.7 0.047 1E-06 46.9 7.2 94 97-191 87-248 (315)
260 TIGR01444 fkbM_fam methyltrans 95.6 0.011 2.5E-07 44.5 3.2 35 99-133 1-36 (143)
261 KOG2187 tRNA uracil-5-methyltr 95.6 0.017 3.6E-07 52.5 4.4 43 90-133 377-419 (534)
262 PF07091 FmrO: Ribosomal RNA m 95.5 0.039 8.4E-07 45.9 6.1 79 80-161 91-184 (251)
263 COG1064 AdhP Zn-dependent alco 95.5 0.044 9.5E-07 47.8 6.6 85 92-183 162-258 (339)
264 COG5459 Predicted rRNA methyla 95.4 0.062 1.4E-06 46.9 7.2 99 96-196 113-236 (484)
265 PF05430 Methyltransf_30: S-ad 95.0 0.038 8.2E-07 41.2 4.2 86 131-223 32-122 (124)
266 PF06859 Bin3: Bicoid-interact 95.0 0.021 4.6E-07 41.4 2.7 39 148-186 1-46 (110)
267 COG2384 Predicted SAM-dependen 95.0 1.2 2.7E-05 36.4 13.1 126 95-226 15-160 (226)
268 PF03492 Methyltransf_7: SAM d 94.9 0.19 4.2E-06 43.9 9.0 64 93-156 13-115 (334)
269 PF10354 DUF2431: Domain of un 94.9 0.34 7.4E-06 38.0 9.4 109 102-210 2-151 (166)
270 PRK09880 L-idonate 5-dehydroge 94.8 0.11 2.5E-06 45.0 7.2 86 94-184 167-266 (343)
271 KOG0024 Sorbitol dehydrogenase 94.7 0.18 3.9E-06 43.6 7.9 91 90-186 163-274 (354)
272 PRK10742 putative methyltransf 94.6 0.043 9.4E-07 45.7 3.9 37 93-130 83-121 (250)
273 PLN02668 indole-3-acetate carb 94.5 0.24 5.2E-06 44.0 8.6 19 96-114 63-81 (386)
274 PF04445 SAM_MT: Putative SAM- 94.5 0.03 6.6E-07 46.2 2.8 66 93-159 70-162 (234)
275 PF05971 Methyltransf_10: Prot 94.3 0.13 2.8E-06 44.1 6.2 140 81-221 85-293 (299)
276 KOG0822 Protein kinase inhibit 94.3 0.19 4E-06 46.1 7.3 84 97-181 368-475 (649)
277 PF07757 AdoMet_MTase: Predict 94.1 0.13 2.7E-06 37.3 4.8 34 95-129 57-90 (112)
278 COG1063 Tdh Threonine dehydrog 94.0 0.086 1.9E-06 46.3 4.8 88 94-186 166-271 (350)
279 KOG1562 Spermidine synthase [A 93.9 0.21 4.7E-06 42.6 6.7 90 95-184 120-236 (337)
280 PRK09424 pntA NAD(P) transhydr 93.9 0.2 4.3E-06 46.2 7.0 91 94-185 162-286 (509)
281 PHA01634 hypothetical protein 93.8 0.097 2.1E-06 39.1 3.9 75 72-155 13-99 (156)
282 cd08283 FDH_like_1 Glutathione 93.8 0.36 7.8E-06 42.7 8.3 94 91-184 179-306 (386)
283 PF06962 rRNA_methylase: Putat 93.7 0.14 3E-06 39.0 4.8 69 121-189 1-97 (140)
284 COG1255 Uncharacterized protei 93.4 0.6 1.3E-05 34.2 7.2 87 95-188 12-105 (129)
285 TIGR00006 S-adenosyl-methyltra 93.2 0.17 3.8E-06 43.5 5.2 63 93-155 17-99 (305)
286 PF01861 DUF43: Protein of unk 93.2 1.7 3.7E-05 36.1 10.7 115 95-210 43-177 (243)
287 KOG1098 Putative SAM-dependent 93.2 0.18 3.9E-06 47.0 5.4 112 84-197 32-169 (780)
288 PRK13699 putative methylase; P 93.0 0.29 6.4E-06 40.3 6.0 71 134-207 4-92 (227)
289 PF11599 AviRa: RRNA methyltra 92.7 0.41 9E-06 39.1 6.2 50 81-130 36-88 (246)
290 KOG2671 Putative RNA methylase 92.6 0.3 6.4E-06 42.6 5.7 96 91-187 203-357 (421)
291 PRK01747 mnmC bifunctional tRN 92.5 0.37 8E-06 46.0 6.9 115 95-216 56-231 (662)
292 PRK11524 putative methyltransf 92.5 0.16 3.4E-06 43.3 3.9 55 132-186 9-82 (284)
293 KOG2198 tRNA cytosine-5-methyl 92.4 0.79 1.7E-05 40.3 8.1 92 93-184 152-296 (375)
294 cd08254 hydroxyacyl_CoA_DH 6-h 92.4 1 2.2E-05 38.5 8.9 88 90-183 159-262 (338)
295 KOG4058 Uncharacterized conser 92.3 0.13 2.8E-06 39.5 2.7 36 95-130 71-106 (199)
296 PF03686 UPF0146: Uncharacteri 92.0 0.64 1.4E-05 34.7 6.1 61 95-156 12-78 (127)
297 TIGR01202 bchC 2-desacetyl-2-h 91.9 0.46 9.9E-06 40.7 6.2 83 95-184 143-231 (308)
298 cd05188 MDR Medium chain reduc 91.7 1.6 3.6E-05 35.6 9.1 91 90-186 128-234 (271)
299 KOG2730 Methylase [General fun 91.3 0.19 4.2E-06 41.1 2.9 59 96-155 94-172 (263)
300 cd00315 Cyt_C5_DNA_methylase C 91.0 0.33 7.1E-06 41.2 4.2 57 99-155 2-69 (275)
301 cd08237 ribitol-5-phosphate_DH 90.8 0.67 1.4E-05 40.3 6.2 88 94-183 161-255 (341)
302 COG2933 Predicted SAM-dependen 90.6 1.4 2.9E-05 37.3 7.3 82 91-176 206-295 (358)
303 PF06460 NSP13: Coronavirus NS 89.7 12 0.00025 31.7 12.2 136 78-216 42-199 (299)
304 TIGR03451 mycoS_dep_FDH mycoth 89.4 2.1 4.5E-05 37.4 8.1 88 91-183 171-275 (358)
305 COG0286 HsdM Type I restrictio 89.3 1.7 3.6E-05 40.1 7.7 92 95-186 185-328 (489)
306 PRK05476 S-adenosyl-L-homocyst 89.3 1.8 3.9E-05 39.2 7.7 122 95-226 210-342 (425)
307 cd08281 liver_ADH_like1 Zinc-d 89.0 2 4.3E-05 37.7 7.8 88 91-183 186-289 (371)
308 PF05206 TRM13: Methyltransfer 88.8 0.88 1.9E-05 38.3 5.0 49 82-130 4-58 (259)
309 PF10237 N6-adenineMlase: Prob 88.6 3.6 7.8E-05 32.1 8.0 92 95-186 24-125 (162)
310 TIGR00561 pntA NAD(P) transhyd 88.5 0.82 1.8E-05 42.3 5.0 88 95-183 162-283 (511)
311 cd08230 glucose_DH Glucose deh 88.1 0.98 2.1E-05 39.3 5.1 82 94-183 170-268 (355)
312 TIGR00936 ahcY adenosylhomocys 87.6 4.1 8.9E-05 36.6 8.8 123 94-226 192-325 (406)
313 KOG3924 Putative protein methy 87.5 1.2 2.7E-05 39.5 5.3 93 89-181 185-305 (419)
314 PRK05708 2-dehydropantoate 2-r 86.4 6.2 0.00013 33.9 9.1 101 98-203 3-121 (305)
315 TIGR02822 adh_fam_2 zinc-bindi 86.2 2.9 6.3E-05 36.1 7.0 84 92-183 161-253 (329)
316 cd08232 idonate-5-DH L-idonate 86.0 3.4 7.3E-05 35.4 7.3 83 96-183 165-261 (339)
317 PF12692 Methyltransf_17: S-ad 85.9 2.5 5.5E-05 32.4 5.6 85 96-181 28-131 (160)
318 PRK06249 2-dehydropantoate 2-r 85.4 5.6 0.00012 34.2 8.3 105 96-205 4-125 (313)
319 PLN02740 Alcohol dehydrogenase 85.3 4.5 9.7E-05 35.7 7.9 88 91-183 193-299 (381)
320 COG3129 Predicted SAM-dependen 84.6 2.7 5.9E-05 34.9 5.5 60 95-155 77-160 (292)
321 PF02005 TRM: N2,N2-dimethylgu 84.3 0.86 1.9E-05 40.5 2.8 88 95-185 48-155 (377)
322 TIGR03366 HpnZ_proposed putati 83.8 1.7 3.6E-05 36.6 4.3 86 94-184 118-218 (280)
323 cd08234 threonine_DH_like L-th 83.8 2.5 5.4E-05 36.1 5.5 88 91-183 154-256 (334)
324 KOG1253 tRNA methyltransferase 83.3 0.53 1.2E-05 42.9 1.1 86 95-183 108-215 (525)
325 PLN02494 adenosylhomocysteinas 83.3 3.7 8E-05 37.6 6.4 123 95-226 252-386 (477)
326 KOG2352 Predicted spermine/spe 82.6 2.2 4.7E-05 38.9 4.7 95 95-189 294-421 (482)
327 PLN02586 probable cinnamyl alc 82.6 4.6 9.9E-05 35.4 6.7 85 93-183 180-277 (360)
328 cd08239 THR_DH_like L-threonin 82.5 5.5 0.00012 34.2 7.1 87 92-183 159-261 (339)
329 COG1867 TRM1 N2,N2-dimethylgua 82.1 2.2 4.9E-05 37.6 4.4 86 97-185 53-155 (380)
330 PTZ00357 methyltransferase; Pr 82.0 3.6 7.8E-05 39.4 5.9 81 98-179 702-830 (1072)
331 KOG2651 rRNA adenine N-6-methy 81.8 3.5 7.6E-05 36.7 5.4 35 95-130 152-187 (476)
332 PF00107 ADH_zinc_N: Zinc-bind 81.5 1.4 3.1E-05 32.1 2.7 75 107-187 2-92 (130)
333 cd00401 AdoHcyase S-adenosyl-L 81.3 2.6 5.7E-05 37.9 4.7 82 94-184 199-289 (413)
334 PF01555 N6_N4_Mtase: DNA meth 81.1 1.5 3.2E-05 35.2 2.8 36 94-130 189-224 (231)
335 KOG1227 Putative methyltransfe 80.6 0.79 1.7E-05 39.3 1.1 89 94-186 192-297 (351)
336 PLN03154 putative allyl alcoho 80.5 5.4 0.00012 34.7 6.4 86 91-183 153-257 (348)
337 PF02254 TrkA_N: TrkA-N domain 80.3 8.3 0.00018 27.5 6.4 80 105-186 4-98 (116)
338 PLN02827 Alcohol dehydrogenase 80.0 3.5 7.5E-05 36.4 5.1 87 92-183 189-294 (378)
339 PF02636 Methyltransf_28: Puta 79.7 4.6 9.9E-05 33.6 5.4 35 96-130 18-61 (252)
340 KOG1209 1-Acyl dihydroxyaceton 79.5 13 0.00028 30.7 7.6 60 95-155 5-88 (289)
341 KOG1501 Arginine N-methyltrans 79.5 1.8 3.9E-05 39.1 3.0 32 99-130 69-100 (636)
342 cd08231 MDR_TM0436_like Hypoth 79.4 17 0.00036 31.5 9.1 84 93-183 174-279 (361)
343 cd08285 NADP_ADH NADP(H)-depen 79.1 8.6 0.00019 33.2 7.2 88 91-183 161-265 (351)
344 PRK10309 galactitol-1-phosphat 78.9 7.4 0.00016 33.6 6.7 87 92-183 156-259 (347)
345 cd08300 alcohol_DH_class_III c 78.6 7.6 0.00016 34.0 6.8 88 91-183 181-287 (368)
346 TIGR02825 B4_12hDH leukotriene 78.3 18 0.0004 30.7 9.0 87 90-183 132-236 (325)
347 PRK12480 D-lactate dehydrogena 78.2 9.3 0.0002 33.3 7.1 107 96-205 145-254 (330)
348 COG0686 Ald Alanine dehydrogen 78.0 2.6 5.5E-05 36.6 3.4 88 96-183 167-267 (371)
349 PRK11524 putative methyltransf 77.6 2.4 5.2E-05 36.1 3.2 38 95-133 207-244 (284)
350 cd08277 liver_alcohol_DH_like 77.3 9.1 0.0002 33.4 6.8 88 91-183 179-285 (365)
351 cd05285 sorbitol_DH Sorbitol d 77.1 24 0.00051 30.3 9.4 89 90-183 156-264 (343)
352 PRK06522 2-dehydropantoate 2-r 77.0 6.7 0.00015 33.1 5.8 101 98-203 1-117 (304)
353 cd08233 butanediol_DH_like (2R 77.0 32 0.00069 29.6 10.1 89 91-184 167-272 (351)
354 KOG2539 Mitochondrial/chloropl 76.8 4.6 9.9E-05 36.8 4.7 103 96-199 200-329 (491)
355 PRK13699 putative methylase; P 76.7 3.2 7E-05 34.1 3.6 37 94-131 161-197 (227)
356 cd08294 leukotriene_B4_DH_like 76.6 17 0.00037 30.7 8.3 86 91-183 138-240 (329)
357 cd05278 FDH_like Formaldehyde 76.4 5 0.00011 34.4 4.9 87 92-183 163-266 (347)
358 PF11253 DUF3052: Protein of u 76.3 23 0.00049 26.5 7.5 80 146-225 43-126 (127)
359 COG4301 Uncharacterized conser 75.7 19 0.0004 30.4 7.6 94 95-188 77-197 (321)
360 PF11899 DUF3419: Protein of u 75.5 4 8.8E-05 36.3 4.1 37 93-130 32-68 (380)
361 COG3510 CmcI Cephalosporin hyd 75.0 29 0.00064 28.1 8.3 88 95-183 68-179 (237)
362 cd08255 2-desacetyl-2-hydroxye 73.2 10 0.00022 31.3 5.9 88 91-183 92-189 (277)
363 TIGR02819 fdhA_non_GSH formald 71.9 14 0.00031 32.8 6.8 93 92-184 181-299 (393)
364 PRK05808 3-hydroxybutyryl-CoA 71.4 16 0.00035 30.7 6.7 109 98-211 4-143 (282)
365 cd08293 PTGR2 Prostaglandin re 71.1 27 0.00058 29.9 8.2 85 93-183 149-253 (345)
366 COG1893 ApbA Ketopantoate redu 71.0 23 0.00049 30.6 7.6 100 98-202 1-117 (307)
367 KOG2078 tRNA modification enzy 71.0 1.1 2.3E-05 40.3 -0.6 40 93-133 246-285 (495)
368 PTZ00075 Adenosylhomocysteinas 70.8 11 0.00023 34.7 5.7 82 95-186 252-342 (476)
369 cd08278 benzyl_alcohol_DH Benz 70.7 13 0.00029 32.4 6.2 87 92-183 182-284 (365)
370 cd08261 Zn_ADH7 Alcohol dehydr 70.5 18 0.00038 30.9 6.9 87 91-183 154-257 (337)
371 PF02826 2-Hacid_dh_C: D-isome 69.9 2.3 5E-05 33.4 1.1 103 95-205 34-147 (178)
372 PRK06487 glycerate dehydrogena 69.5 16 0.00035 31.6 6.4 110 96-211 147-260 (317)
373 PLN02514 cinnamyl-alcohol dehy 69.4 28 0.00061 30.2 8.0 85 93-183 177-274 (357)
374 PRK09260 3-hydroxybutyryl-CoA 68.6 19 0.00042 30.4 6.6 118 98-221 2-151 (288)
375 COG1062 AdhC Zn-dependent alco 68.3 18 0.00039 31.8 6.2 86 93-183 182-284 (366)
376 PLN02178 cinnamyl-alcohol dehy 67.9 15 0.00032 32.4 6.0 83 95-183 177-272 (375)
377 cd08279 Zn_ADH_class_III Class 67.6 37 0.0008 29.5 8.4 88 91-183 177-281 (363)
378 PF01795 Methyltransf_5: MraW 67.5 6.4 0.00014 34.1 3.4 62 94-155 18-100 (310)
379 COG0275 Predicted S-adenosylme 67.4 10 0.00022 32.7 4.5 45 156-202 215-260 (314)
380 cd08245 CAD Cinnamyl alcohol d 67.1 27 0.00058 29.6 7.3 87 92-184 158-256 (330)
381 cd08265 Zn_ADH3 Alcohol dehydr 67.1 41 0.00089 29.5 8.6 88 92-183 199-306 (384)
382 PRK15469 ghrA bifunctional gly 67.0 33 0.00072 29.6 7.8 113 96-211 135-253 (312)
383 cd08298 CAD2 Cinnamyl alcohol 66.9 48 0.001 28.0 8.8 85 91-183 162-255 (329)
384 PF11899 DUF3419: Protein of u 66.6 9.2 0.0002 34.1 4.3 52 133-184 278-334 (380)
385 cd08236 sugar_DH NAD(P)-depend 66.6 27 0.00058 29.8 7.2 87 92-183 155-257 (343)
386 COG1568 Predicted methyltransf 66.5 25 0.00054 30.1 6.6 108 96-207 152-284 (354)
387 PF01555 N6_N4_Mtase: DNA meth 66.2 13 0.00028 29.6 4.9 39 162-200 34-74 (231)
388 KOG0023 Alcohol dehydrogenase, 66.2 6.5 0.00014 34.2 3.1 85 93-183 178-278 (360)
389 PRK12921 2-dehydropantoate 2-r 66.2 58 0.0013 27.4 9.1 100 98-203 1-119 (305)
390 cd08296 CAD_like Cinnamyl alco 66.1 17 0.00037 31.1 5.9 86 93-184 160-259 (333)
391 cd08263 Zn_ADH10 Alcohol dehyd 65.9 35 0.00077 29.6 7.9 87 92-183 183-286 (367)
392 PF02153 PDH: Prephenate dehyd 65.5 7.9 0.00017 32.4 3.6 99 111-213 2-108 (258)
393 PRK08410 2-hydroxyacid dehydro 64.7 25 0.00055 30.3 6.6 109 96-210 144-257 (311)
394 cd08295 double_bond_reductase_ 64.1 17 0.00038 31.1 5.6 86 91-183 146-250 (338)
395 COG2961 ComJ Protein involved 63.8 90 0.0019 26.4 11.4 115 95-212 88-223 (279)
396 TIGR00006 S-adenosyl-methyltra 63.8 11 0.00024 32.6 4.1 39 162-202 218-256 (305)
397 PF08484 Methyltransf_14: C-me 63.6 36 0.00077 26.4 6.7 85 95-184 66-159 (160)
398 PF02558 ApbA: Ketopantoate re 63.2 7.2 0.00016 29.3 2.7 97 100-201 1-116 (151)
399 PLN02166 dTDP-glucose 4,6-dehy 62.9 1.2E+02 0.0026 27.5 11.6 57 95-155 118-191 (436)
400 PRK13243 glyoxylate reductase; 62.1 21 0.00045 31.2 5.7 108 96-206 149-261 (333)
401 PRK06035 3-hydroxyacyl-CoA deh 62.0 33 0.00071 29.0 6.8 110 98-211 4-146 (291)
402 cd08240 6_hydroxyhexanoate_dh_ 61.8 90 0.0019 26.7 9.7 85 94-183 173-273 (350)
403 cd05279 Zn_ADH1 Liver alcohol 61.6 31 0.00066 30.1 6.7 89 90-183 177-284 (365)
404 PF03514 GRAS: GRAS domain fam 60.0 35 0.00077 30.3 6.8 34 95-128 109-150 (374)
405 KOG0022 Alcohol dehydrogenase, 59.8 10 0.00022 33.0 3.2 38 93-130 189-228 (375)
406 cd08242 MDR_like Medium chain 59.8 31 0.00067 29.1 6.3 85 91-182 150-243 (319)
407 PRK04989 psbM photosystem II r 59.3 21 0.00045 20.2 3.3 27 1-27 1-27 (35)
408 cd08286 FDH_like_ADH2 formalde 58.4 1.2E+02 0.0025 25.9 9.8 87 92-183 162-265 (345)
409 PF05711 TylF: Macrocin-O-meth 58.4 32 0.0007 28.8 5.9 36 95-130 73-114 (248)
410 CHL00080 psbM photosystem II p 58.3 20 0.00044 20.1 3.1 27 1-27 1-27 (34)
411 COG1565 Uncharacterized conser 58.2 21 0.00046 31.5 5.0 41 90-130 71-120 (370)
412 PRK00050 16S rRNA m(4)C1402 me 58.1 16 0.00034 31.5 4.1 38 162-201 214-251 (296)
413 PRK05786 fabG 3-ketoacyl-(acyl 58.0 52 0.0011 26.2 7.2 90 96-186 4-137 (238)
414 TIGR02437 FadB fatty oxidation 57.8 68 0.0015 31.2 8.8 116 97-220 313-461 (714)
415 cd05281 TDH Threonine dehydrog 57.8 41 0.0009 28.7 6.8 85 94-183 161-261 (341)
416 PRK11199 tyrA bifunctional cho 57.6 84 0.0018 27.8 8.8 103 96-213 97-202 (374)
417 COG0604 Qor NADPH:quinone redu 57.2 84 0.0018 27.2 8.6 92 89-187 135-244 (326)
418 PF07090 DUF1355: Protein of u 57.1 14 0.0003 29.3 3.3 40 147-186 66-110 (177)
419 PF08802 CytB6-F_Fe-S: Cytochr 57.1 31 0.00068 20.1 4.0 22 6-27 9-30 (39)
420 PF01795 Methyltransf_5: MraW 57.0 11 0.00025 32.6 3.1 42 162-205 219-260 (310)
421 TIGR02441 fa_ox_alpha_mit fatt 57.0 63 0.0014 31.5 8.5 119 98-222 336-485 (737)
422 cd08238 sorbose_phosphate_red 56.8 59 0.0013 28.9 7.8 89 92-185 171-289 (410)
423 TIGR03038 PS_II_psbM photosyst 56.7 24 0.00051 19.7 3.2 27 1-27 1-27 (33)
424 TIGR00692 tdh L-threonine 3-de 56.6 31 0.00067 29.5 5.8 85 94-183 159-260 (340)
425 PLN02256 arogenate dehydrogena 56.3 30 0.00064 29.8 5.6 114 95-214 34-157 (304)
426 COG0677 WecC UDP-N-acetyl-D-ma 55.9 43 0.00092 30.2 6.4 113 97-210 9-155 (436)
427 PF02737 3HCDH_N: 3-hydroxyacy 55.4 56 0.0012 25.7 6.6 103 99-210 1-138 (180)
428 PF05151 PsbM: Photosystem II 55.3 21 0.00045 19.7 2.8 27 1-27 1-27 (31)
429 COG0275 Predicted S-adenosylme 55.3 32 0.00069 29.7 5.4 39 93-131 20-60 (314)
430 KOG2912 Predicted DNA methylas 55.1 33 0.00071 30.0 5.4 51 80-130 84-137 (419)
431 PLN02928 oxidoreductase family 55.0 32 0.0007 30.2 5.7 113 96-211 158-289 (347)
432 cd08274 MDR9 Medium chain dehy 55.0 1.3E+02 0.0029 25.5 9.8 86 91-183 172-272 (350)
433 COG1748 LYS9 Saccharopine dehy 54.9 47 0.001 29.8 6.6 58 98-155 2-75 (389)
434 cd08282 PFDH_like Pseudomonas 54.7 60 0.0013 28.3 7.4 92 91-182 171-283 (375)
435 TIGR00675 dcm DNA-methyltransf 54.5 11 0.00023 32.6 2.6 56 100-155 1-66 (315)
436 PRK06932 glycerate dehydrogena 54.2 37 0.00081 29.3 5.9 111 96-211 146-260 (314)
437 PRK10083 putative oxidoreducta 53.8 31 0.00068 29.4 5.4 88 91-183 155-258 (339)
438 PLN02206 UDP-glucuronate decar 53.8 1.7E+02 0.0038 26.5 10.5 57 95-155 117-190 (442)
439 PRK03659 glutathione-regulated 53.6 34 0.00073 32.4 5.9 83 98-185 401-499 (601)
440 PRK07819 3-hydroxybutyryl-CoA 53.3 49 0.0011 28.1 6.4 106 98-211 6-146 (286)
441 PLN02702 L-idonate 5-dehydroge 53.1 49 0.0011 28.6 6.6 87 92-183 177-284 (364)
442 PLN02545 3-hydroxybutyryl-CoA 53.0 68 0.0015 27.1 7.3 111 97-211 4-144 (295)
443 cd08284 FDH_like_2 Glutathione 52.8 51 0.0011 28.0 6.6 86 93-183 164-265 (344)
444 PRK11790 D-3-phosphoglycerate 52.4 42 0.00091 30.2 6.1 104 96-205 150-259 (409)
445 TIGR00518 alaDH alanine dehydr 52.3 9.2 0.0002 33.9 1.9 88 96-184 166-267 (370)
446 PRK08306 dipicolinate synthase 52.2 25 0.00055 30.1 4.5 88 96-189 151-246 (296)
447 PRK05396 tdh L-threonine 3-deh 52.0 40 0.00087 28.8 5.8 85 95-184 162-263 (341)
448 COG1052 LdhA Lactate dehydroge 51.3 30 0.00064 30.2 4.8 106 96-205 145-256 (324)
449 cd08267 MDR1 Medium chain dehy 51.3 88 0.0019 25.9 7.7 88 92-184 139-240 (319)
450 PRK08818 prephenate dehydrogen 51.0 77 0.0017 28.2 7.4 105 96-214 3-115 (370)
451 PRK11730 fadB multifunctional 50.9 98 0.0021 30.1 8.7 117 98-221 314-462 (715)
452 cd08260 Zn_ADH6 Alcohol dehydr 50.9 88 0.0019 26.7 7.8 86 92-183 161-263 (345)
453 cd08241 QOR1 Quinone oxidoredu 50.6 90 0.0019 25.8 7.6 85 92-183 135-237 (323)
454 PRK08265 short chain dehydroge 49.9 84 0.0018 25.7 7.2 59 96-155 5-87 (261)
455 PRK07066 3-hydroxybutyryl-CoA 49.8 1.3E+02 0.0029 26.1 8.6 119 97-221 7-153 (321)
456 PRK15409 bifunctional glyoxyla 49.7 56 0.0012 28.4 6.3 110 96-211 144-263 (323)
457 cd08243 quinone_oxidoreductase 49.7 1.3E+02 0.0029 24.8 8.6 84 92-183 138-237 (320)
458 PF01558 POR: Pyruvate ferredo 49.6 64 0.0014 24.9 6.1 65 114-186 16-88 (173)
459 PRK07806 short chain dehydroge 49.5 1E+02 0.0022 24.7 7.6 88 96-185 5-135 (248)
460 PRK06436 glycerate dehydrogena 49.5 53 0.0011 28.3 6.0 104 96-205 121-229 (303)
461 PRK11064 wecC UDP-N-acetyl-D-m 49.3 55 0.0012 29.5 6.4 101 98-200 4-134 (415)
462 COG0111 SerA Phosphoglycerate 49.3 38 0.00083 29.5 5.2 107 97-211 142-260 (324)
463 PF06016 Reovirus_L2: Reovirus 49.0 54 0.0012 33.8 6.6 88 96-185 822-928 (1289)
464 PRK06701 short chain dehydroge 48.6 61 0.0013 27.2 6.3 89 96-185 45-182 (290)
465 COG0270 Dcm Site-specific DNA 48.2 27 0.00059 30.3 4.1 106 97-205 3-141 (328)
466 cd08287 FDH_like_ADH3 formalde 48.0 1.2E+02 0.0027 25.7 8.2 87 92-183 164-267 (345)
467 cd08262 Zn_ADH8 Alcohol dehydr 47.9 1.1E+02 0.0023 26.0 7.8 89 91-184 156-264 (341)
468 PRK07574 formate dehydrogenase 47.8 56 0.0012 29.2 6.1 104 96-205 191-304 (385)
469 cd08256 Zn_ADH2 Alcohol dehydr 47.7 81 0.0017 27.0 7.0 86 92-183 170-273 (350)
470 PRK08229 2-dehydropantoate 2-r 47.2 99 0.0021 26.6 7.5 102 98-204 3-125 (341)
471 KOG3350 Uncharacterized conser 47.2 1.5E+02 0.0032 23.8 8.8 92 95-187 72-175 (217)
472 COG5379 BtaA S-adenosylmethion 47.2 25 0.00053 30.4 3.5 36 94-130 61-96 (414)
473 PRK07502 cyclohexadienyl dehyd 46.3 48 0.001 28.2 5.4 110 98-210 7-126 (307)
474 KOG0821 Predicted ribosomal RN 46.2 1.6E+02 0.0034 24.6 7.8 36 95-130 49-84 (326)
475 PRK13581 D-3-phosphoglycerate 45.9 39 0.00084 31.5 5.0 104 96-205 139-250 (526)
476 PF08139 LPAM_1: Prokaryotic m 45.8 35 0.00077 17.8 2.7 15 7-21 5-19 (25)
477 PRK00094 gpsA NAD(P)H-dependen 45.8 15 0.00033 31.3 2.2 84 98-184 2-105 (325)
478 PF07101 DUF1363: Protein of u 45.7 8.2 0.00018 27.2 0.4 14 100-113 6-19 (124)
479 KOG2015 NEDD8-activating compl 45.6 63 0.0014 28.4 5.7 79 98-178 41-157 (422)
480 KOG2811 Uncharacterized conser 45.5 60 0.0013 28.9 5.6 47 84-130 169-220 (420)
481 PRK06130 3-hydroxybutyryl-CoA 45.4 33 0.00071 29.3 4.2 110 97-210 4-139 (311)
482 PRK14094 psbM photosystem II r 45.4 22 0.00048 21.5 2.1 27 1-27 1-27 (50)
483 TIGR02818 adh_III_F_hyde S-(hy 45.3 36 0.00079 29.7 4.5 89 91-184 180-287 (368)
484 PRK07877 hypothetical protein; 45.1 37 0.00079 33.1 4.7 34 96-129 106-141 (722)
485 PRK08293 3-hydroxybutyryl-CoA 44.8 31 0.00067 29.1 3.9 106 98-208 4-142 (287)
486 TIGR00872 gnd_rel 6-phosphoglu 44.7 34 0.00074 29.2 4.1 99 99-201 2-109 (298)
487 PRK11154 fadJ multifunctional 44.6 1.7E+02 0.0036 28.4 9.2 116 97-219 309-457 (708)
488 PF00145 DNA_methylase: C-5 cy 44.4 21 0.00045 30.3 2.8 104 99-203 2-134 (335)
489 COG4017 Uncharacterized protei 43.3 32 0.00069 27.9 3.4 60 95-155 43-106 (254)
490 PF14740 DUF4471: Domain of un 43.3 26 0.00057 30.0 3.2 59 146-209 220-287 (289)
491 COG0569 TrkA K+ transport syst 41.9 42 0.00091 27.4 4.1 57 98-155 1-73 (225)
492 TIGR01381 E1_like_apg7 E1-like 41.6 29 0.00062 33.2 3.4 34 96-129 337-372 (664)
493 cd05283 CAD1 Cinnamyl alcohol 41.5 98 0.0021 26.4 6.6 85 94-184 167-263 (337)
494 KOG1252 Cystathionine beta-syn 41.2 1.2E+02 0.0027 26.6 6.9 37 95-131 210-251 (362)
495 PRK10669 putative cation:proto 41.2 1.2E+02 0.0027 28.3 7.6 83 98-185 418-516 (558)
496 PF08351 DUF1726: Domain of un 41.0 38 0.00083 23.6 3.2 39 146-186 9-47 (92)
497 TIGR00497 hsdM type I restrict 40.9 82 0.0018 29.1 6.3 91 96-186 217-357 (501)
498 PF03721 UDPG_MGDP_dh_N: UDP-g 40.8 25 0.00055 27.8 2.6 32 98-130 1-34 (185)
499 PRK07417 arogenate dehydrogena 40.8 34 0.00074 28.8 3.5 77 99-179 2-86 (279)
500 PRK12744 short chain dehydroge 40.6 1.4E+02 0.003 24.2 7.2 87 96-183 7-144 (257)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=2.1e-19 Score=147.78 Aligned_cols=91 Identities=29% Similarity=0.403 Sum_probs=82.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...+|.+|||||||||..+..+++. |.++|+|+|+|++| ++++++|++++||+|++||+|.+.+
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee
Confidence 3358999999999999999999998 77899999999883 4489999999999999999999998
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..+.. ++.++|+|+.|+|||||++++.
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 88877 9999999999999999987754
No 2
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.74 E-value=3.9e-17 Score=137.44 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=105.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC------------------CeEEEcCCCCCCCCCCceeEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL------------------PLVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~------------------~~~~~~d~~~~~~~~~~fD~V 152 (229)
.++++.+|||+|||+|..+..+++. + .++|+|+|+|++| +.++++|++++|+++++||+|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 3467899999999999999999876 3 4699999999763 347889999999999999999
Q ss_pred Ecccchhhh-CHHHHHHHHHhccccCcEEEEEeecCC---------------------------------------cccH
Q 027039 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA---------------------------------------GREI 192 (229)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~---------------------------------------~~~~ 192 (229)
+++...++. ++.++++++.|+|||||++++..-... -.+.
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~ 229 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTG 229 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCH
Confidence 998877777 899999999999999999886532211 1255
Q ss_pred HHHHHHHhcCceeEeeeeeecCCeeEEEEEE
Q 027039 193 KQIVELFRTSRFVDAANVTVNGSNMTRILMR 223 (229)
Q Consensus 193 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (229)
+++.++++..+|..++.....+.....++.+
T Consensus 230 ~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 230 EELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 6777888899988887777666666666544
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.72 E-value=1.4e-17 Score=137.78 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+++.+|||+|||+|..+..+++. +.++|+|+|+|+.| ++++++|++++|+++++||+|++.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 378899999999999999999886 45699999999873 4599999999999999999999988
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..+.+ ++.++++|++|+|||||+++++
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 77777 8999999999999999998854
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=3e-17 Score=115.96 Aligned_cols=82 Identities=30% Similarity=0.495 Sum_probs=71.1
Q ss_pred EEEcCCCChhhHHHHhCCCCeEEEecCCCC------------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-CHHHHH
Q 027039 101 LCVSAGAGHEVMAFNSIGVADVTGVELMDS------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (229)
Q Consensus 101 LDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~l 167 (229)
||+|||+|..+..+++.+..+++++|+++. ...+.++|..++|+++++||+|+++.+.++. ++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 899999999999999995559999999987 2339999999999999999999999988888 889999
Q ss_pred HHHHhccccCcEEEE
Q 027039 168 GEMERTVKIGGVCMV 182 (229)
Q Consensus 168 ~~~~~~LkpgG~lil 182 (229)
+++.|+|||||++++
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999874
No 5
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.69 E-value=7.4e-16 Score=123.29 Aligned_cols=127 Identities=23% Similarity=0.221 Sum_probs=98.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.++++.+|||+|||+|..+..++.. +..+|+++|+++. .+.++++|+.+.+. +++||+|+++.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 3466899999999999999999875 5569999999976 25588999988776 77999999976
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh--cCceeEeeeeeecCCeeEEEEEEecc
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR--TSRFVDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
+. ++..+++++.+.|||||.+++..... ...++.++-. ...+.+...++.+|.+...++...+|
T Consensus 121 ~~---~~~~~l~~~~~~LkpGG~lv~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 121 VA---SLSDLVELCLPLLKPGGRFLALKGRD---PEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred cc---CHHHHHHHHHHhcCCCeEEEEEeCCC---hHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 43 47889999999999999999776543 3334444433 77788888888888776666554443
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=5.3e-16 Score=130.04 Aligned_cols=116 Identities=10% Similarity=0.063 Sum_probs=90.3
Q ss_pred cCchhHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCC
Q 027039 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADP 139 (229)
Q Consensus 69 ~~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~ 139 (229)
|....|.+........+..+++.....++.+|||||||+|..+..+++. +..+|+|+|+|+.+ +.++++|+
T Consensus 2 w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~ 81 (255)
T PRK14103 2 WDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV 81 (255)
T ss_pred CCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh
Confidence 4444443333333333344444445578899999999999999999987 44599999999874 45889999
Q ss_pred CCCCCCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 140 HNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 140 ~~~~~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.+++ ++++||+|+++.+.+++ ++.++++++.++|||||.+++.+.
T Consensus 82 ~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 82 RDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 8875 56899999999888888 899999999999999999987653
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.67 E-value=2.1e-15 Score=124.43 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=102.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||+|||+|..+..+++. +.++++|+|+++.+ ++++.+|..+.++++++||+|+++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4578899999999999999999876 34699999998662 457889999888888999999998
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecCCc----------------------------------------ccHHH
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAG----------------------------------------REIKQ 194 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~----------------------------------------~~~~~ 194 (229)
...++. ++.++++++.++|||||.+++....... .+..+
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 777666 8899999999999999998865432211 12356
Q ss_pred HHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 195 IVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
+.++++..+|..++-....+.....++.+|
T Consensus 202 l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 778888888887765555555556666543
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.66 E-value=1.5e-15 Score=132.33 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
+++.+|||||||+|..+..+++. +. +|+|+|+++. .+.++.+|+.++|+++++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 67889999999999999999987 55 9999999975 256889999999999999999999887
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+|. ++.++++++.++|||||++++..
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7777 89999999999999999998764
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.65 E-value=6.7e-16 Score=119.63 Aligned_cols=93 Identities=28% Similarity=0.450 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC-----eEEEcCCCCCCCCCCceeEEEcccchhhh-CHHHHH
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~-----~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~l 167 (229)
..++.+|||||||.|.++..+++.|. +++|+|+++.++ .....+....+.++++||+|+++++.+|+ ++.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 47899999999999999999988888 999999998754 23333344555678999999999999999 899999
Q ss_pred HHHHhccccCcEEEEEeecC
Q 027039 168 GEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 168 ~~~~~~LkpgG~lil~~~~~ 187 (229)
+++.+.|||||.+++.+...
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHhcCCCCEEEEEEcCC
Confidence 99999999999999888764
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.64 E-value=2.4e-15 Score=125.72 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC----------eEEEcCCCCCCCCCCceeEEEcccchhhh-CH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~ 163 (229)
.++.+|||+|||+|..+..++..+. +++++|+++.++ .++.+|++++|+++++||+|+++...++. ++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 4678999999999999999988775 999999998743 47899999999989999999998766666 89
Q ss_pred HHHHHHHHhccccCcEEEEEeec
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..++.++.++|||||.+++.+..
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999999877533
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.64 E-value=1e-15 Score=131.97 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||||||+|.++..++..|. +|+|+|+++++ +.++++|++++++++++||+|++..+.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4677999999999999999998776 99999999752 447788888888888899999999999
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+|+ ++..+++++.++|||||.+++.+.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999 999999999999999999998753
No 12
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.63 E-value=2.9e-16 Score=127.68 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------------EEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
-++.+|||||||.|.++..+|..|. .|+|+|+++.+++ +.+...+++....++||+|+|..+.+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 3899999999999999999999996 9999999998654 444444554444589999999999999
Q ss_pred h-CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 161 L-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 161 ~-~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
. +|..+++.+.+.+||||.+++.+-..
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9 99999999999999999999887663
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1.4e-14 Score=125.36 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||||||+|.++..++..|...|+|+|+|+. .+.++.+|++++|+ +++||+|+|..+.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 367899999999999999999987668999999874 24578889999988 7899999998888
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEeec---CC------------------cccHHHHHHHHhcCceeEeeeee
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEE---CA------------------GREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~~---~~------------------~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
+|. +|..+++++++.|||||.+++..-. .. ..+..++.+.+.+.+|..++.+.
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 787 8999999999999999999875311 10 01456778888888888776653
No 14
>PRK05785 hypothetical protein; Provisional
Probab=99.59 E-value=1.3e-14 Score=119.55 Aligned_cols=83 Identities=23% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-------EEEcCCCCCCCCCCceeEEEcccchhhh-CHHHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRF 166 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-------~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~ 166 (229)
.++.+|||||||+|..+..+++....+|+|+|+|++|++ ++++|++++|+++++||+|+++...++. ++.++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~ 129 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKV 129 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHH
Confidence 457899999999999999999883249999999998644 6789999999999999999999877777 89999
Q ss_pred HHHHHhccccC
Q 027039 167 VGEMERTVKIG 177 (229)
Q Consensus 167 l~~~~~~Lkpg 177 (229)
++++.|+|||.
T Consensus 130 l~e~~RvLkp~ 140 (226)
T PRK05785 130 IAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHhcCc
Confidence 99999999994
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=2.8e-14 Score=113.78 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
++.+|||+|||+|..+..++.. +..+|+|+|+++. .+.++++|+.+++ .+++||+|+++.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRAL-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhh--
Confidence 4889999999999999998876 4568999999985 2458889998874 3679999999762
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe--eeeeec
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA--ANVTVN 213 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~ 213 (229)
.+...+++.+.+.|||||.+++............+.+.+..+++.-+ ..++++
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 25677889999999999999877654444444455555444555433 345555
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=2.2e-14 Score=120.30 Aligned_cols=91 Identities=13% Similarity=0.244 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCC-CCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLP-FFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~-~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..+++.+. +|+++|+++.+ +.++++|+.+++ +.+++||+|+++.+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4678999999999999999999976 99999999763 347788887763 56789999999988
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+++ +|.++++++.++|||||.+++....
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 8888 8999999999999999999876433
No 17
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=1.2e-14 Score=121.88 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=82.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEE
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~ 153 (229)
...++....+.++.+|||||||+|.++..+++. +..+|+|+|+++. .+.++.+|+.++. ++++||+|+
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIF 98 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEE
Confidence 333444445578899999999999999999987 5569999999976 3458888988765 456999999
Q ss_pred cccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++...+++ ++.++++++.++|||||.+++.+.
T Consensus 99 ~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 99888877 889999999999999999887654
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.58 E-value=2.5e-14 Score=122.95 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=93.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++.+|||||||+|.++..++..|...|+|+|+|+.+ +.+..+++.+++.. ++||+|+|+.+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 35688999999999999999988876689999998853 23566777777753 58999999988
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEeec--CC-------------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEE--CA-------------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~~~--~~-------------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.+|. +|..++++++++|||||.+++.+.. .+ ..+..++...+++.+|..++.+..
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 8888 9999999999999999999875321 10 114567778888889888876543
No 19
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.57 E-value=4.7e-14 Score=118.88 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=78.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++++.+|||||||+|..+..++.. +. +|+|+|+++. .+.++.+|+.+.|+++++||+|++...
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 35688999999999999999999876 54 9999999975 255788999888998999999999765
Q ss_pred hhhh---CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~---~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
..|. ++..+++++.++|||||.+++.-
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5554 57889999999999999998653
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.56 E-value=1.5e-14 Score=111.97 Aligned_cols=91 Identities=20% Similarity=0.375 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCCChhhHHHH-hC-CCCeEEEecCCCC---------------CCeEEEcCCCCCC--CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFN-SI-GVADVTGVELMDS---------------LPLVSRADPHNLP--FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~-~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~ 155 (229)
+.+.+|||+|||+|..+..++ .. +..+++|+|+++. .+.++++|+.+++ ++ ++||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 568899999999999999999 44 4569999999987 2459999999977 55 899999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+.++. ++..+++++.+.||+||.+++....
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 877777 7889999999999999998866655
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.56 E-value=4.7e-14 Score=113.96 Aligned_cols=111 Identities=19% Similarity=0.247 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+.+ +.+..+|+.+.++ +++||+|+++.+.+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchh
Confidence 4678999999999999999999976 99999999863 4466778877776 46799999987766
Q ss_pred hhC---HHHHHHHHHhccccCcEEEEEeecC-----------CcccHHHHHHHHhcCceeEe
Q 027039 160 ALF---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 160 ~~~---~~~~l~~~~~~LkpgG~lil~~~~~-----------~~~~~~~l~~l~~~~~~~~~ 207 (229)
+.. ...+++++.++|||||.++++.... ...+..++.+.|..++.+..
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~ 168 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKY 168 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhCCCeEEEe
Confidence 653 4789999999999999966543221 11245678888886655554
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.55 E-value=4.4e-14 Score=122.43 Aligned_cols=117 Identities=22% Similarity=0.226 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------CeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
+++.+|||||||+|..+..+++. +..+++++|+++.+ ++++++|++++++++++||+|+++...++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 56789999999999999988876 55699999998763 458899999999989999999998877777
Q ss_pred -CHHHHHHHHHhccccCcEEEEEeecCC--------------cccHHHHHHHHhcCceeEeeeee
Q 027039 162 -FPSRFVGEMERTVKIGGVCMVLMEECA--------------GREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 162 -~~~~~l~~~~~~LkpgG~lil~~~~~~--------------~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
++..+++++.++|||||.+++...... ..+.+++.++++..+|..++..+
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 889999999999999999886543211 12457788889988888765443
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=2.2e-14 Score=104.85 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCC-CCCCCCCCceeEEEccc-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADP-HNLPFFDEAFDVAFTAH- 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~-~~~~~~~~~fD~V~~~~- 156 (229)
|+.+|||||||+|..+..+++. +..+++|+|+++. .+.++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 6789999999999999999994 4559999999987 345899999 33333 45799999987
Q ss_pred chhhh----CHHHHHHHHHhccccCcEEEEEe
Q 027039 157 LAEAL----FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 157 ~~~~~----~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
..++. ...++++++.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33322 35789999999999999988653
No 24
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.53 E-value=4.4e-14 Score=115.38 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=78.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CC------CeEEEecCCCCC------------------CeEEEcCCCCCCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GV------ADVTGVELMDSL------------------PLVSRADPHNLPFFDE 147 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~------~~v~~vD~s~~~------------------~~~~~~d~~~~~~~~~ 147 (229)
...+++++||++||+|..+..+.+. +. .+|+..|+++.+ ..++.+|++++||+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 3467899999999999999998776 33 699999999873 3489999999999999
Q ss_pred ceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 148 AFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+||...+..-.... ++++.++|++|+|||||++. +...
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~-cLeF 215 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFS-CLEF 215 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEE-EEEc
Confidence 99999987544433 79999999999999999988 4443
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.53 E-value=9.7e-14 Score=126.15 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=79.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++++.+|||||||+|..+..++.. +. +++|+|+|+. .+.++.+|..+.++++++||+|++..+
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 3577889999999999999999887 55 9999999965 245889999998888889999999987
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+|. ++..++++++++|||||.+++..
T Consensus 342 l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 342 ILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 7777 89999999999999999988764
No 26
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.53 E-value=1.2e-13 Score=110.38 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
-++.++||+|||.|..+..|+++|+ +|+++|.|+. .+.....|+.+..++ +.||+|++..+..+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 3678999999999999999999999 9999999986 345788898887774 68999998766666
Q ss_pred hCH---HHHHHHHHhccccCcEEEEEeec-CC----------cccHHHHHHHHhcCceeEeee
Q 027039 161 LFP---SRFVGEMERTVKIGGVCMVLMEE-CA----------GREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 161 ~~~---~~~l~~~~~~LkpgG~lil~~~~-~~----------~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+.+ .++++.+...++|||.+++++-. .. .....+|.+.|..+++++-.+
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E 169 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNE 169 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEc
Confidence 633 67899999999999998875422 11 113457899999999987554
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.53 E-value=8.3e-14 Score=117.78 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=90.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||+|||+|..+..++.. + .++|+++|+++. .+.++.+|++++++++++||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 3578999999999999988877765 4 358999999876 2347889999999888999999998
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeec--------------------CCcccHHHHHHHHhcCceeEee
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE--------------------CAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~--------------------~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
.+.++. ++.++++++.++|||||++++.--. ....+..++.+++...+|..+.
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 777766 7889999999999999998874211 1123456677777777766654
No 28
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.52 E-value=1.4e-13 Score=110.95 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------------eEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||+|||+|..+..+++.|. +|+|+|+++.++ .+...|....++ +++||+|+++.+.++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEeccccc
Confidence 4567999999999999999999876 999999998633 355567666565 368999999877666
Q ss_pred hC---HHHHHHHHHhccccCcEEEEEeecC-----------CcccHHHHHHHHhcCceeEee
Q 027039 161 LF---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 161 ~~---~~~~l~~~~~~LkpgG~lil~~~~~-----------~~~~~~~l~~l~~~~~~~~~~ 208 (229)
.+ ...+++++.+.|||||+++++.... ...+..++.+.|.....+...
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~~~~~~~~ 168 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYADWELLKYN 168 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCCCeEEEee
Confidence 53 3689999999999999966553211 123567788888876665555
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.51 E-value=2.6e-13 Score=111.74 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-----------CeEEEcCCCCCCCCCCceeEEEcccchhhh-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~- 161 (229)
..+.+|||+|||+|.++..+++. +..+++++|+++.+ +.++.+|+.+.++++++||+|+++++.++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 34578999999999999999988 45579999999763 468899999999888999999999888888
Q ss_pred CHHHHHHHHHhccccCcEEEEEeec
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++.+++.++.++|||||.+++....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 8999999999999999998876543
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.51 E-value=3.1e-13 Score=111.19 Aligned_cols=93 Identities=26% Similarity=0.395 Sum_probs=80.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..+.++.+|||+|||+|.++..++.. +.++++|+|+++. .+.++.+|+.+.++++++||+|++.
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEe
Confidence 35578899999999999999999886 3569999999975 2458888988888888999999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+.++. ++..+++++.+.|||||.+++..
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 888887 89999999999999999988664
No 31
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=1.5e-13 Score=115.76 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------Ce--EEEcCCCCCCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PL--VSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~--~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.|.+|||||||+|+++..++..|...|+|+|++... .. .....++++|. .++||+|+|-.+..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 688999999999999999999988899999998761 11 22235667776 78999999998888
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCC---------------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECA---------------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~---------------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
|. +|...+.+++..|+|||.+++-+-.-+ --+...+..-.++++|..++.+..
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 88 999999999999999999987654311 116778888899999999988754
No 32
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.51 E-value=7.4e-13 Score=109.14 Aligned_cols=131 Identities=19% Similarity=0.263 Sum_probs=102.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..++.+|||+|||+|..+..++... ..+++++|+++. .+.++.+|+.+.++++++||+|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 3567899999999999999998873 469999999864 2457888988888778899999998
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecCCc----------------------------------------ccHHH
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAG----------------------------------------REIKQ 194 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~----------------------------------------~~~~~ 194 (229)
+..++. ++..+++++.+.|+|||.+++....... .+..+
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 777777 8899999999999999998765321111 12355
Q ss_pred HHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 195 IVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
+.+++...+|..++.....+.-..+++.++
T Consensus 209 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 209 LAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 778888999988777665555557777665
No 33
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.51 E-value=1.5e-14 Score=118.71 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=73.1
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe---------------------EEEcCCCCCCCCCCceeEEEcc
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------VSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~---------------------~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
|++|||+|||+|.++..|+..|. +|+|+|+++.+++ +...+++.. .+.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 47899999999999999999986 9999999988443 333333333 2469999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.+.+|. +|++++..+.+.|||||.+++.+-..
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 999999 99999999999999999999876553
No 34
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.50 E-value=3.9e-13 Score=109.55 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=78.3
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----CCeEEEcCCCCCC--------CCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~~ 157 (229)
..++++.+|||+|||+|.++..+++. + .+.|+|+|+++. .+.++++|+.+.+ +.+++||+|+++..
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 34588999999999999999999887 3 359999999863 4678999998853 66789999999632
Q ss_pred hhhh-C-----------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHH
Q 027039 158 AEAL-F-----------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (229)
Q Consensus 158 ~~~~-~-----------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l 198 (229)
.... . ...+++++.++|||||.+++.+-. .....++.+.
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~--~~~~~~~l~~ 177 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ--GEGFDEYLRE 177 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec--CcCHHHHHHH
Confidence 2111 1 146889999999999998875543 3344444433
No 35
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.49 E-value=9.6e-13 Score=107.37 Aligned_cols=129 Identities=22% Similarity=0.266 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CC-CeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~-~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||+|||+|..+..+++. +. .+++++|+++. .+.++.+|+.+.++++++||+|+++...+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 47889999999999999999887 32 58999999865 25688899998888788999999987777
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCCc----------------------------------------ccHHHHHHH
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECAG----------------------------------------REIKQIVEL 198 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~----------------------------------------~~~~~l~~l 198 (229)
+. ++..+++++.+.|+|||++++....... .+..++..+
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAM 197 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHH
Confidence 66 8899999999999999998865432111 023446667
Q ss_pred HhcCceeEeeeeeecCCeeEEEEEE
Q 027039 199 FRTSRFVDAANVTVNGSNMTRILMR 223 (229)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (229)
+...+|..+..-+..+.-...++.+
T Consensus 198 l~~aGf~~~~~~~~~~~~~~~~~~~ 222 (223)
T TIGR01934 198 LKEAGFEEVRYRSLTFGVAAIHVGK 222 (223)
T ss_pred HHHcCCccceeeeeecceeeEEEec
Confidence 7777777766666655544555543
No 36
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=109.77 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------e-EEEcCCCCCC-CCCCceeEEEcccchh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------L-VSRADPHNLP-FFDEAFDVAFTAHLAE 159 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------~-~~~~d~~~~~-~~~~~fD~V~~~~~~~ 159 (229)
...||+||||+|..-..+-..+..+||++|+++.|- + |+.++.+++| ++|+++|.|++..+..
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 345799999999987776666556999999998832 2 8899999998 8899999999986555
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCCccc
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECAGRE 191 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~ 191 (229)
.. +|.+.++++.|+|||||+++++-...+.|.
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~ 189 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYG 189 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEecccccch
Confidence 55 999999999999999999987766655553
No 37
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.49 E-value=6.4e-13 Score=108.53 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------------------CeEEEcCCCCCCCC-C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------------------PLVSRADPHNLPFF-D 146 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------------------~~~~~~d~~~~~~~-~ 146 (229)
.++.+|||+|||.|..+..|+++|+ +|+|+|+|+.. +.+.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5778999999999999999999998 99999999772 34578888876642 3
Q ss_pred CceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecC------C---cccHHHHHHHHh-cCceeEeeeee
Q 027039 147 EAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC------A---GREIKQIVELFR-TSRFVDAANVT 211 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~------~---~~~~~~l~~l~~-~~~~~~~~~~~ 211 (229)
++||.|+...+..|+.+ ...++.+.++|||||.+++.+-.. + ..+..++.++|. .+++..+....
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~~ 189 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESRD 189 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeecc
Confidence 57999998766666644 568999999999999755553321 1 245678889997 45776666544
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=3.8e-13 Score=114.73 Aligned_cols=112 Identities=15% Similarity=0.228 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.+ +.+...|+...++ +++||+|+++.+.+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 445999999999999999999986 99999999873 3366677776655 6799999999877766
Q ss_pred C---HHHHHHHHHhccccCcEEEEEeecC-----------CcccHHHHHHHHhcCceeEeee
Q 027039 162 F---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 162 ~---~~~~l~~~~~~LkpgG~lil~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+ ...+++++.+.|||||.++++.... ...+..++.+.|..++++...+
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~~~e 259 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVKYNE 259 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEEEec
Confidence 4 4678999999999999976553211 1235678999999988877754
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.48 E-value=5.5e-14 Score=100.79 Aligned_cols=80 Identities=25% Similarity=0.254 Sum_probs=53.2
Q ss_pred EEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe---------------EEEcCCCCCC--CCCCceeEEEcccchhhh-
Q 027039 101 LCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLP--FFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 101 LDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------------~~~~d~~~~~--~~~~~fD~V~~~~~~~~~- 161 (229)
||||||+|..+..+.+. +..+++|+|+|+.+++ ....+..+.. ...++||+|++..+.+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999888 6679999999999773 2222222221 112599999999999999
Q ss_pred CHHHHHHHHHhccccCcEE
Q 027039 162 FPSRFVGEMERTVKIGGVC 180 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~l 180 (229)
++.++++++.+.|||||.+
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 8899999999999999985
No 40
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.47 E-value=1.3e-12 Score=107.10 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------------------CeEEEcCCCCCCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------------------PLVSRADPHNLPFFD 146 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------------------~~~~~~d~~~~~~~~ 146 (229)
..++.+|||+|||.|..+..|+++|+ +|+|+|+|+.. +.+.++|+.+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35678999999999999999999998 99999999762 335678888875332
Q ss_pred -CceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecCC---------cccHHHHHHHHhc-CceeEeeeeee
Q 027039 147 -EAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFRT-SRFVDAANVTV 212 (229)
Q Consensus 147 -~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~---------~~~~~~l~~l~~~-~~~~~~~~~~~ 212 (229)
+.||+|+...+..++.+ .+.++.+.++|||||.+++++.... ..+..++.++|.. .++..++....
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~~~ 193 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQDV 193 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeeccc
Confidence 68999998777677744 6789999999999997554332211 2367788999986 68877777665
Q ss_pred cCC
Q 027039 213 NGS 215 (229)
Q Consensus 213 ~~~ 215 (229)
.+.
T Consensus 194 ~~~ 196 (218)
T PRK13255 194 LED 196 (218)
T ss_pred ccc
Confidence 553
No 41
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.46 E-value=5.9e-13 Score=105.41 Aligned_cols=119 Identities=25% Similarity=0.294 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCC-C-CCCCCceeEEEcccchhhh-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHN-L-PFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~-~-~~~~~~fD~V~~~~~~~~~- 161 (229)
++++++|||+|||.|.+...|.+. ++ +..|+|++++ .+.++++|+++ + .|+|++||.|+++....+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 489999999999999999999886 55 9999999987 56699999987 4 4899999999999888888
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCC-------------------------------cccHHHHHHHHhcCceeEeeee
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECA-------------------------------GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~-------------------------------~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+|.++++|+.|+ |...++.++..+ -.+++.+.++.+..++.-.+.+
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~ 166 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERV 166 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEE
Confidence 899999999766 557666766532 1156777788887777777776
Q ss_pred eecCCe
Q 027039 211 TVNGSN 216 (229)
Q Consensus 211 ~~~~~~ 216 (229)
...+..
T Consensus 167 ~~~~~~ 172 (193)
T PF07021_consen 167 FLDGGR 172 (193)
T ss_pred EEcCCC
Confidence 655544
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.45 E-value=2.7e-13 Score=114.61 Aligned_cols=102 Identities=24% Similarity=0.244 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCC
Q 027039 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLP 143 (229)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~ 143 (229)
....+..+.+...+++|.+|||||||.|.++..+++. |+ +|+|+.+|+. .+.+...|..+++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 3455566677778899999999999999999999999 87 9999999976 3457778887765
Q ss_pred CCCCceeEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 144 FFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+||.|++..+.+|+ +...+++++.+.|||||++++..-.
T Consensus 126 ---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 126 ---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred ---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 399999999888887 4589999999999999999876433
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.43 E-value=1.3e-12 Score=107.19 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=87.6
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.+|||||||+|..+..+++. +..+++|+|+++.+ +.++.+|..+.+++ ++||+|++..+.+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999887 44599999998752 35788888766664 58999999988888
Q ss_pred h-CHHHHHHHHHhccccCcEEEEEeecCC-------------cccHHHHHHHHhcCceeEeeee
Q 027039 161 L-FPSRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 161 ~-~~~~~l~~~~~~LkpgG~lil~~~~~~-------------~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
. ++..+++++.++|||||.+++...... ..+..++.+++...+|..+...
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 8 889999999999999999887643211 1135667778887777766544
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.43 E-value=1.4e-12 Score=105.98 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=69.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------CeEEEcCCCCCCCCCCceeEEEcccchhhhC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~ 162 (229)
+.++.+|||+|||+|..+..+++. +..+++|+|+|+.+ +.+.++|+.+ |+++++||+|+++.+.+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 367889999999999999999887 55699999999873 4578889888 88899999999999888886
Q ss_pred H---HHHHHHHHhccccCcEEE
Q 027039 163 P---SRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 163 ~---~~~l~~~~~~LkpgG~li 181 (229)
| .++++++.+++ ++.++
T Consensus 120 p~~~~~~l~el~r~~--~~~v~ 139 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYIL 139 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEE
Confidence 5 56777777776 34444
No 45
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.42 E-value=1.2e-12 Score=110.83 Aligned_cols=96 Identities=21% Similarity=0.320 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C---CCeEEEecCCCCC----------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G---VADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g---~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||+|||+|.++..+++. + ...++|+|+|+.+ +.+.++|+.++|+++++||+|++...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 45678999999999999998865 2 2379999999763 45889999999999999999998542
Q ss_pred hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHH
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l 198 (229)
...++++.|+|||||.++++... .....++.+.
T Consensus 161 ---~~~~~e~~rvLkpgG~li~~~p~--~~~l~el~~~ 193 (272)
T PRK11088 161 ---PCKAEELARVVKPGGIVITVTPG--PRHLFELKGL 193 (272)
T ss_pred ---CCCHHHHHhhccCCCEEEEEeCC--CcchHHHHHH
Confidence 23468899999999999987665 3333444443
No 46
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.41 E-value=2.5e-12 Score=101.46 Aligned_cols=109 Identities=24% Similarity=0.315 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccch-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLA- 158 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~- 158 (229)
++.+|||+|||+|..+..++.. +..+|+++|+++.+ +.++..|..+.. ++++||+|++|--.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-cccceeEEEEccchh
Confidence 7889999999999999999998 44479999999871 457788876632 37899999998211
Q ss_pred --h--hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE
Q 027039 159 --E--AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD 206 (229)
Q Consensus 159 --~--~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~ 206 (229)
. .. ...+++++..+.|||||.++++......+. ..+.++|+..+.+.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~-~~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYE-RLLKELFGDVEVVA 161 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHH-HHHHHHHS--EEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChH-HHHHHhcCCEEEEE
Confidence 1 11 347889999999999999998887655443 33788888665544
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.41 E-value=4.5e-13 Score=108.66 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCC-CCCC--CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADP-HNLP--FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~-~~~~--~~~~~fD~V~~~ 155 (229)
+++.+|||+|||+|..+..+++. +..+++|+|+++. .+.++++|+ +.++ +++++||.|+++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 46789999999999999999887 5569999999986 345888998 6666 678899999986
Q ss_pred cchhh------h---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 156 HLAEA------L---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 156 ~~~~~------~---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
..... . ....+++++.++|||||.+++.+.. ..-...+.+.+...++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--EGYAEYMLEVLSAEGGF 175 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--HHHHHHHHHHHHhCccc
Confidence 42211 1 1367899999999999998877654 44455677777766653
No 48
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=1.4e-12 Score=108.96 Aligned_cols=89 Identities=9% Similarity=0.139 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHh--C-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNS--I-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~--~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
+.++.+|||||||+|..+..+++ . +..+++|+|+|+.+ +.++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 46889999999999999988876 2 45699999999863 45788898888764 5899999
Q ss_pred ccchhhhCH---HHHHHHHHhccccCcEEEEEe
Q 027039 155 AHLAEALFP---SRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 155 ~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~ 184 (229)
+...+++.+ ..+++++.+.|||||.+++.-
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 877777643 679999999999999988653
No 49
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=2.3e-12 Score=108.17 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=81.2
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDE 147 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~ 147 (229)
++.+.....+++|++|||||||.|..++.+++. +. +|+|+++|++ .+++...|..+. ++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e 136 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EE 136 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---cc
Confidence 344455568899999999999999999999999 76 9999999987 244555565554 45
Q ss_pred ceeEEEcccchhhh-C--HHHHHHHHHhccccCcEEEEEeec
Q 027039 148 AFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~--~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+||-|+|..+.+|+ . ...++..+.+.|+|||.+++++-.
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 69999999988988 3 689999999999999999887654
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.38 E-value=9.8e-12 Score=99.45 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=81.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.++.+|||+|||+|..+..++.. +..+++++|+++.+ +.++.+|... ++ +++||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECC
Confidence 3467889999999999999999887 55699999999872 3366666532 33 46899999865
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEee
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
... ....+++++.+.|||||.+++.... ..+..++.+.+++.++..++
T Consensus 106 ~~~--~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 106 SGG--NLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred Ccc--CHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence 322 3567889999999999998765432 34556777888877765444
No 51
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.38 E-value=1.2e-12 Score=104.77 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=85.7
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe----------EEEcCCCCCCCCCCceeEEEcc
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------VSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+++.-.+.+..+|.|+|||+|..+..|+++ |...++|+|.|++|+. |.++|+.++. ++..+|++++|
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaN 99 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFAN 99 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhh
Confidence 3444456678899999999999999999998 8789999999998654 8899999976 46789999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+.+.+ +-.+++.++...|.|||.+.+.++.
T Consensus 100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 888888 8889999999999999998877765
No 52
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.37 E-value=7.7e-12 Score=100.10 Aligned_cols=114 Identities=20% Similarity=0.215 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~L 174 (229)
.++..|.|+|||.+.++..+.. +. .|...|+......++.+|+.+.|+++++.|+++..-.+...+...++.|+.|+|
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvL 148 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVL 148 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHE
T ss_pred CCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHhee
Confidence 4567999999999999977643 34 899999999988999999999999999999999865455557899999999999
Q ss_pred ccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 175 KIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 175 kpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
||||.+.+.=-...-.+.+.+.+...+.+|.....-
T Consensus 149 K~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 149 KPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp EEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 999998876555556678889999999999888753
No 53
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.37 E-value=9.2e-12 Score=97.15 Aligned_cols=127 Identities=20% Similarity=0.345 Sum_probs=99.0
Q ss_pred CCCC-eEEEEcCCCChhhHHHHhCCCCe-EEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 95 FNHS-KVLCVSAGAGHEVMAFNSIGVAD-VTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~-~vLDiG~G~G~~~~~l~~~g~~~-v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.... +|||+|||.|.+...|++.|+.. .+|+|+|++ .+.|.+.|+.+..+..++||+|+--.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecC
Confidence 3444 99999999999999999997654 999999987 25699999998778889999998652
Q ss_pred chhhh--C-------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeec--------CCeeEE
Q 027039 157 LAEAL--F-------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVN--------GSNMTR 219 (229)
Q Consensus 157 ~~~~~--~-------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--------~~~~~~ 219 (229)
....+ . +.-.+..+.+.|+|||+++ ++++ +....++.+.|.+.+|+....|..+ |+....
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv-ItSC--N~T~dELv~~f~~~~f~~~~tvp~ptF~FgG~~G~tvt~ 221 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV-ITSC--NFTKDELVEEFENFNFEYLSTVPTPTFMFGGSVGSTVTS 221 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEE-EEec--CccHHHHHHHHhcCCeEEEEeeccceEEeccccccEEEE
Confidence 22221 1 2345678889999999988 5665 6788999999999999888887654 566666
Q ss_pred EEEEe
Q 027039 220 ILMRR 224 (229)
Q Consensus 220 ~~~~~ 224 (229)
+.|++
T Consensus 222 vaF~~ 226 (227)
T KOG1271|consen 222 VAFLR 226 (227)
T ss_pred EEEec
Confidence 66654
No 54
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.36 E-value=6.3e-12 Score=93.10 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=69.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCC-CCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHN-LPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~-~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||+|||+|..+..+++. +..+++++|+++.+ +.++.+|+.. .+...++||.|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 4467789999999999999999987 55699999998762 3466677654 33334689999986
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.... ...++++++.+.|||||.+++.+
T Consensus 96 ~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGG--LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccch--hHHHHHHHHHHHcCCCCEEEEEe
Confidence 4222 24689999999999999988765
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.36 E-value=6.1e-13 Score=95.82 Aligned_cols=79 Identities=27% Similarity=0.452 Sum_probs=63.7
Q ss_pred EEEEcCCCChhhHHHHhC---C-CCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc-cchhh
Q 027039 100 VLCVSAGAGHEVMAFNSI---G-VADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA-HLAEA 160 (229)
Q Consensus 100 vLDiG~G~G~~~~~l~~~---g-~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~~~~~ 160 (229)
|||+|||+|..+..+.+. + ..+++|+|+++. .++++++|+.++++.+++||+|++. .+.+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999876 2 259999999987 3459999999999888999999995 44666
Q ss_pred hCH---HHHHHHHHhccccCc
Q 027039 161 LFP---SRFVGEMERTVKIGG 178 (229)
Q Consensus 161 ~~~---~~~l~~~~~~LkpgG 178 (229)
+.+ .++++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 743 778999999999998
No 56
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.36 E-value=2.1e-11 Score=97.60 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----CCeEEEcCCCCCC--------CCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~~ 157 (229)
..++++.+|||+|||+|.++..++.. +.++++++|+++. .+.++++|+.+.+ +++++||+|+++..
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 45688999999999999999988876 4458999999985 4567788887643 45678999998531
Q ss_pred h--------hhh----CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc
Q 027039 158 A--------EAL----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (229)
Q Consensus 158 ~--------~~~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~ 201 (229)
. .+. ...+++.++.+.|+|||++++.... .+...++.+.+++
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~--~~~~~~~l~~l~~ 161 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ--GEEIDEYLNELRK 161 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc--CccHHHHHHHHHh
Confidence 1 111 1367899999999999998875533 4455555555443
No 57
>PRK06922 hypothetical protein; Provisional
Probab=99.36 E-value=2.2e-12 Score=118.86 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCC--CCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLP--FFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~--~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.+ +.++++|..++| +++++||+|+++.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 46889999999999999998876 56699999999863 246788988877 78899999999866
Q ss_pred hhhh--------------CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL--------------FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~--------------~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.++. ++.++++++.++|||||.+++.-
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5542 35789999999999999998753
No 58
>PRK14967 putative methyltransferase; Provisional
Probab=99.36 E-value=7.2e-12 Score=103.04 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=80.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEccc--
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAH-- 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~-- 156 (229)
.+.++.+|||+|||+|.++..++..+..+++++|+++.+ +.++.+|+.+. +++++||+|+++-
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy 111 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPY 111 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCC
Confidence 357789999999999999999988776699999999862 34677777653 4567999999972
Q ss_pred chhhh--------------------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 157 LAEAL--------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 157 ~~~~~--------------------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
..... ....+++++.+.|||||+++++.... ....++.+.++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--~~~~~~~~~l~~~g~ 177 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--SGVERTLTRLSEAGL 177 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--cCHHHHHHHHHHCCC
Confidence 11100 13567889999999999988776653 234556666665444
No 59
>PRK04266 fibrillarin; Provisional
Probab=99.35 E-value=2e-11 Score=100.51 Aligned_cols=120 Identities=20% Similarity=0.166 Sum_probs=85.4
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCC----CCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNL----PFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~----~~~~~~fD~V~ 153 (229)
..++++.+|||+|||+|.++..+++. +.+.|+|+|+++. .+.++.+|+.+. ++ .++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 35679999999999999999999987 5569999999984 345778887652 22 35699999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCC-----c--ccHHHHHHHHhcCceeEeeeeeec
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-----G--REIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~-----~--~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
+.. ........+++++.++|||||.+++.+.... . ...++..+.++..+|..++.++..
T Consensus 147 ~d~-~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 147 QDV-AQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred ECC-CChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 632 1100123468999999999999998644211 1 112234577888888888777654
No 60
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.35 E-value=4.8e-12 Score=106.68 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=76.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChh----hHHHHhC-C-----CCeEEEecCCCCC---------------------
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHE----VMAFNSI-G-----VADVTGVELMDSL--------------------- 131 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~----~~~l~~~-g-----~~~v~~vD~s~~~--------------------- 131 (229)
.+++.+.......++.+|||+|||+|.. +..+++. + ..+|+|+|+|+.+
T Consensus 86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~ 165 (264)
T smart00138 86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKAL 165 (264)
T ss_pred HHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHH
Confidence 3344443333334568999999999974 4444443 2 2489999999862
Q ss_pred ---------------------CeEEEcCCCCCCCCCCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeec
Q 027039 132 ---------------------PLVSRADPHNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 132 ---------------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.|.++|+.+.++++++||+|+|.++.+++++ .++++++++.|||||.+++-..+
T Consensus 166 ~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 166 LARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 34777888887777889999999988888743 47999999999999998865554
No 61
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=3.2e-12 Score=106.15 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC---CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~---g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
..++.+|||+|||+|..+..+++. +..+++|+|+++.+ +.++++|+.+++++ .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 367889999999999999998874 45699999999763 35888999988764 5899999
Q ss_pred ccchhhhC---HHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALF---PSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~---~~~~l~~~~~~LkpgG~lil~ 183 (229)
+...++.. +..+++++.++|||||.+++.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 87777663 478999999999999998865
No 62
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.34 E-value=5.3e-12 Score=111.67 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=75.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC------------eEEEcCCCCCCCCCCceeEE
Q 027039 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~V 152 (229)
..+.....++++.+|||||||+|..+..+++. |. +|+|+|+|+.++ ++...|..++ +++||.|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEE
Confidence 33344446689999999999999999999887 65 999999998743 3555666554 4789999
Q ss_pred Ecccchhhh---CHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
++..+.+|. ++..+++++.++|||||.+++..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 998777776 34789999999999999998765
No 63
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.34 E-value=1.4e-11 Score=108.89 Aligned_cols=129 Identities=9% Similarity=0.046 Sum_probs=94.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCCC-CCCceeEEEcc--c
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLPF-FDEAFDVAFTA--H 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~-~~~~fD~V~~~--~ 156 (229)
+++.+|||+|||+|..+..++.. +..+++|+|+|+.+ +.++++|+.+..+ .+++||+|+|| +
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 45679999999999999999875 55699999999873 4488888865433 24689999998 2
Q ss_pred chh---h-------------h----C----HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 157 LAE---A-------------L----F----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 157 ~~~---~-------------~----~----~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+.. . + + ..++++++.+.|+|||.+++.++. +....+.+++.+.++..++..+.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---~Q~e~V~~ll~~~Gf~~v~v~kD 406 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---DQGAAVRGVLAENGFSGVETLPD 406 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---cHHHHHHHHHHHCCCcEEEEEEc
Confidence 110 0 0 1 246677778899999998876665 44567888888878877777766
Q ss_pred cCCeeEEEEEEecc
Q 027039 213 NGSNMTRILMRRTR 226 (229)
Q Consensus 213 ~~~~~~~~~~~~~~ 226 (229)
.....|.++.++.|
T Consensus 407 l~G~dR~v~~~~~~ 420 (423)
T PRK14966 407 LAGLDRVTLGKYMK 420 (423)
T ss_pred CCCCcEEEEEEEhh
Confidence 66666877766544
No 64
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=101.47 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=96.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCC--CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~ 155 (229)
....+|||+|||+|..+..++++ +..+++|+|+++. .++++++|+.++. ....+||+|+||
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 45889999999999999999999 6579999999987 3559999998854 334579999999
Q ss_pred --c--------------chhhh---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce--eEeeee-eec
Q 027039 156 --H--------------LAEAL---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF--VDAANV-TVN 213 (229)
Q Consensus 156 --~--------------~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~--~~~~~~-~~~ 213 (229)
+ ..+|. +.+++++...+.|||||.+.++.+. +...++.+++++.++ .++..| ...
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i~~V~p~~ 199 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRIQFVYPKI 199 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 1 11222 3578899999999999999987774 566778888886444 444444 445
Q ss_pred CCeeEEEEEEecc
Q 027039 214 GSNMTRILMRRTR 226 (229)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (229)
|....+++.+-.|
T Consensus 200 ~k~A~~vLv~~~k 212 (248)
T COG4123 200 GKAANRVLVEAIK 212 (248)
T ss_pred CCcceEEEEEEec
Confidence 6666666665444
No 65
>PTZ00146 fibrillarin; Provisional
Probab=99.34 E-value=3.3e-11 Score=101.91 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=84.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC-------------CCeEEEcCCCCC---CCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS-------------LPLVSRADPHNL---PFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~-------------~~~~~~~d~~~~---~~~~~~fD~V~ 153 (229)
..++++++|||+|||+|.++..+++. + .+.|+++|+++. .+.++.+|+... ....++||+|+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEE
Confidence 35689999999999999999999998 3 568999999964 345778887642 22345899999
Q ss_pred cccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcc---cHHHH----HHHHhcCceeEeeeeee
Q 027039 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGR---EIKQI----VELFRTSRFVDAANVTV 212 (229)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~---~~~~l----~~l~~~~~~~~~~~~~~ 212 (229)
+... .. ....++.++.+.|||||.+++.+.....+ +.+++ .+.++..+|..++.++.
T Consensus 208 ~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 208 ADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred EeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 9642 23 33456679999999999999865443222 12222 35577777777776655
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.33 E-value=2.5e-11 Score=96.39 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||+|||+|..+..++..+. +++++|+++.+ +.++.+|..+.+ .++||+|+++...++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 4567899999999999999999866 99999999873 346777876643 469999999832211
Q ss_pred h----------------------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 161 L----------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 161 ~----------------------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
. ...++++++.++|||||.++++.... ....++.+.+++.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~--~~~~~~~~~l~~~gf~ 159 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL--NGEPDTFDKLDERGFR 159 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--CChHHHHHHHHhCCCe
Confidence 1 13568999999999999988776552 2356677778777753
No 67
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.33 E-value=8e-12 Score=106.66 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||+|||+|..+..++..|..+|+|+|+++.+++ +..++. .+..+++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCH
Confidence 578999999999999999988887779999999987332 333332 23346799999998654
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
. ....++.++.+.|||||.+++.-- ..+...++.+.+++. |..+
T Consensus 236 ~--~l~~ll~~~~~~LkpgG~li~sgi--~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 236 E--VIKELYPQFSRLVKPGGWLILSGI--LETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred H--HHHHHHHHHHHHcCCCcEEEEEeC--cHhHHHHHHHHHHcc-Ccee
Confidence 3 235788999999999999775432 245566777777765 4433
No 68
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.32 E-value=1e-11 Score=99.61 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=87.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------EEEcCCCC-CCCCCCceeEEEccc-chh----
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHN-LPFFDEAFDVAFTAH-LAE---- 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------~~~~d~~~-~~~~~~~fD~V~~~~-~~~---- 159 (229)
.+.-|||||||+|.-+..+.+.|+ ..+|+|+|+.|++ ++.+|+-+ +||..++||.+++.. +.|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 367899999999999999999996 9999999999654 66777665 899999999999862 211
Q ss_pred --hh-CH----HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeec
Q 027039 160 --AL-FP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 160 --~~-~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
.. +| ..|+..++..|++|++.++-+......+.+.+...-...+|-.=.-|+.+
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecc
Confidence 11 23 45788899999999998887776555555556655556665544444444
No 69
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=1.5e-11 Score=111.85 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------CeEEEcCCC--CCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPH--NLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------~~~~~~d~~--~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||||||+|..+..+++.+ .+|+|+|+++.+ +.++++|+. .+++++++||+|+++...+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 467799999999999999999885 499999999873 347788886 4677889999999998888
Q ss_pred hhC---HHHHHHHHHhccccCcEEEEEeecC----------C---cccHHHHHHHHhcCceeEe
Q 027039 160 ALF---PSRFVGEMERTVKIGGVCMVLMEEC----------A---GREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 160 ~~~---~~~~l~~~~~~LkpgG~lil~~~~~----------~---~~~~~~l~~l~~~~~~~~~ 207 (229)
++. ..++++++.++|||||.+++.-... + -.......++|..+++...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 773 4689999999999999987642110 0 0135567778888777665
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.32 E-value=4.2e-12 Score=102.29 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=82.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCC---CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLP---FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~V~~~ 155 (229)
+...++||||||+|.++..++.. +...++|+|+++. .+.++++|+.+++ ++++++|.|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 35679999999999999999987 6679999999986 3458889987643 456799999987
Q ss_pred cchhhh---------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc-eeEe
Q 027039 156 HLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR-FVDA 207 (229)
Q Consensus 156 ~~~~~~---------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~-~~~~ 207 (229)
.-..+. ....+++++.++|||||.+++.++. ......+.+.+.... |..+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHhCCCeEec
Confidence 322111 1257999999999999998877765 334555666666544 4433
No 71
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.1e-11 Score=104.97 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=87.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.+++.+|||+|||||.++++.++.|..+++|+|+++..++ ....+.... ...++||+|++|-+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-~~~~~~DvIVANIL 238 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-PENGPFDVIVANIL 238 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-cccCcccEEEehhh
Confidence 3699999999999999999999999989999999987332 111111111 12369999999865
Q ss_pred hhhhCH-HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 158 AEALFP-SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 158 ~~~~~~-~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
.+ + .++..++.+.+||||++++.-=- ....+.+.+.+.+.+|.-+......++
T Consensus 239 A~---vl~~La~~~~~~lkpgg~lIlSGIl--~~q~~~V~~a~~~~gf~v~~~~~~~eW 292 (300)
T COG2264 239 AE---VLVELAPDIKRLLKPGGRLILSGIL--EDQAESVAEAYEQAGFEVVEVLEREEW 292 (300)
T ss_pred HH---HHHHHHHHHHHHcCCCceEEEEeeh--HhHHHHHHHHHHhCCCeEeEEEecCCE
Confidence 55 4 46788999999999997754322 334667888998888888887777666
No 72
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.32 E-value=1.1e-11 Score=103.71 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=84.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEc-----CC---CCCCCCCCceeEEEcccchhhhCHHH
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA-----DP---HNLPFFDEAFDVAFTAHLAEALFPSR 165 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~-----d~---~~~~~~~~~fD~V~~~~~~~~~~~~~ 165 (229)
..++.+|||+|||+|..+..++..|..+|+|+|+++.+++.... +. ..++..+.+||+|+++...+ ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~ 194 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLE 194 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHH
Confidence 36889999999999999998888877679999999885541111 11 11222233799999974433 2356
Q ss_pred HHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 166 FVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 166 ~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
++.++.+.|||||.+++.--. ......+.+.+.+.+|.-+......++.
T Consensus 195 l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~~~~~~~~~~W~ 243 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFTLDEVLERGEWV 243 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCEEEEEEEeCCEE
Confidence 789999999999998865322 4456778888888888776666655553
No 73
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.31 E-value=2.3e-11 Score=97.86 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------CeEEEcCCCC-C-CCCCCceeEEEcccchhhh-CH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------PLVSRADPHN-L-PFFDEAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------~~~~~~d~~~-~-~~~~~~fD~V~~~~~~~~~-~~ 163 (229)
+++.+|||+|||+|..+..+++....+++|+|+++.+ ++++++|+.+ + ++++++||+|++++..+|+ ++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 6788999999999999999987643488999999763 4688888876 4 4778899999999888888 89
Q ss_pred HHHHHHHHhccccCcEEEEEeecC-------------------------------CcccHHHHHHHHhcCceeEeeeeee
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEEC-------------------------------AGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~~-------------------------------~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.++++++.+.++++ ++.++.. ...+..++.+++...+|.-+.....
T Consensus 92 ~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 92 EEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred HHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 99999998877653 2222110 1235677888888888887776544
No 74
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.31 E-value=2.7e-11 Score=103.18 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=90.3
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcc--cch
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA--HLA 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~--~~~ 158 (229)
.+|||+|||+|..+..++.. +..+++|+|+++.+ +.++++|..+ ++++++||+|++| ++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 68999999999999999987 54699999999862 5577888765 3444589999997 111
Q ss_pred h-----------h------------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeec
Q 027039 159 E-----------A------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVN 213 (229)
Q Consensus 159 ~-----------~------------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~ 213 (229)
. + + ....+++++.+.|+|||.+++.++.. ....+.+++. ..++..+..++..
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---QQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---HHHHHHHHHHhcCCCceeEEecCC
Confidence 0 0 0 23567889999999999988777753 3456677777 4567677667666
Q ss_pred CCeeEEEEEEe
Q 027039 214 GSNMTRILMRR 224 (229)
Q Consensus 214 ~~~~~~~~~~~ 224 (229)
....|.++.++
T Consensus 272 ~g~~R~~~~~~ 282 (284)
T TIGR00536 272 NGKERVVLGFY 282 (284)
T ss_pred CCCceEEEEEe
Confidence 66667777654
No 75
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.31 E-value=3.2e-11 Score=102.76 Aligned_cols=116 Identities=15% Similarity=0.222 Sum_probs=85.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------------EEEcCCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..++.+|||+|||||.++++.+..|..+|+|+|+++..+. +......+ ...++||+|++|=+..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--LVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--TCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--cccccCCEEEECCCHH
Confidence 4788999999999999999999999989999999987322 32222222 2358999999985444
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
. ...++..+.+.|||||++++. .--......+.+.|++ ++.-+......++.
T Consensus 237 v--L~~l~~~~~~~l~~~G~lIlS--GIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~ 288 (295)
T PF06325_consen 237 V--LLELAPDIASLLKPGGYLILS--GILEEQEDEVIEAYKQ-GFELVEEREEGEWV 288 (295)
T ss_dssp H--HHHHHHHCHHHEEEEEEEEEE--EEEGGGHHHHHHHHHT-TEEEEEEEEETTEE
T ss_pred H--HHHHHHHHHHhhCCCCEEEEc--cccHHHHHHHHHHHHC-CCEEEEEEEECCEE
Confidence 2 245777899999999997753 3224566788888987 88888777777774
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.31 E-value=3.4e-11 Score=97.30 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=80.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC----------------CeEEEcCCCCC-CCCCCceeEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL----------------PLVSRADPHNL-PFFDEAFDVA 152 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~----------------~~~~~~d~~~~-~~~~~~fD~V 152 (229)
..+.++.+|||+|||+|.++..++.. +.++|+++|+++.+ +.++.+|..+. +..++.||.|
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 35678999999999999999998765 34699999999762 33666777653 3334689999
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
+++. ....+..+++++.+.|||||++++.+.. .+...++.+.+++.+|
T Consensus 116 ~~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 116 FIGG--GSEKLKEIISASWEIIKKGGRIVIDAIL--LETVNNALSALENIGF 163 (198)
T ss_pred EECC--CcccHHHHHHHHHHHcCCCcEEEEEeec--HHHHHHHHHHHHHcCC
Confidence 9853 1225788999999999999998764443 4556677777776555
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=1.9e-11 Score=99.38 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=69.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
.++++.+|||||||+|..+..+++. + .++|+++|+++.+ +.++.+|..+....+++||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 4578899999999999999998876 3 4699999999761 45788898875445679999999
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+....+. ..++.+.|||||++++.+..
T Consensus 149 ~~~~~~~-----~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 149 TAAASTI-----PSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ccCcchh-----hHHHHHhcCcCcEEEEEEcC
Confidence 7554432 24688999999998876654
No 78
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=4.7e-11 Score=100.86 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=91.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc--
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA-- 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-- 155 (229)
..++.+|||+|||+|..+..++.. +..+++|+|+++. .+.++.+|..+. +.+++||+|+++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 356789999999999999999987 5569999999975 245777777542 335799999996
Q ss_pred cchh------------------------hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 156 HLAE------------------------AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 156 ~~~~------------------------~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
++.. .. ....+++++.+.|||||.+++.++. .....+.+++.+.+|..+...
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHHHhCCCceeEEe
Confidence 1100 01 1356788889999999998876643 344668888888888777766
Q ss_pred eecCCeeEEEEEE
Q 027039 211 TVNGSNMTRILMR 223 (229)
Q Consensus 211 ~~~~~~~~~~~~~ 223 (229)
.......|.++.+
T Consensus 262 ~d~~~~~r~~~~~ 274 (275)
T PRK09328 262 KDLAGRDRVVLGR 274 (275)
T ss_pred cCCCCCceEEEEE
Confidence 5555555666543
No 79
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.29 E-value=3.1e-11 Score=99.64 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCC-CCCCceeEEEcccch
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLP-FFDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~-~~~~~fD~V~~~~~~ 158 (229)
..++.+|||||||+|..+..+++.+. +++++|+++.. +.++..+..+.+ ..+++||+|++.++.
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35788999999999999999988865 89999999763 346667776654 345799999999887
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++. ++..+++++.+.|+|||.+++...
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 877 899999999999999999886643
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=6.8e-11 Score=94.05 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..++..+ .+++++|+++.+ +.++++|..+ ++.+++||+|+++.-
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 577899999999999999999886 499999999762 4566777665 344568999998732
Q ss_pred hhh---------------------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 158 AEA---------------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 158 ~~~---------------------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
... . ...++++++.++|||||.+++++... .....+.+.+.+.+|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCHHHHHHHHHHCCCeee
Confidence 111 1 14668999999999999988777652 344668888887776443
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=2.1e-11 Score=99.64 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=71.0
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
++...++++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|......++++||+
T Consensus 69 ~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 69 CELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDR 148 (212)
T ss_pred HHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCE
Confidence 33335688999999999999999998877 3 359999999976 256888998876556789999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
|++..... .....+.+.|||||++++...
T Consensus 149 I~~~~~~~-----~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 149 IYVTAAGP-----DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred EEECCCcc-----cchHHHHHhhCCCcEEEEEEc
Confidence 99864332 223466778999999887664
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.28 E-value=2.8e-11 Score=100.75 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc--c
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH--L 157 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~--~ 157 (229)
.+.+|||+|||+|..+..++.. +..+++|+|+++. .+.++.+|+.+ ++++++||+|+++- .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4568999999999999999987 5569999999976 24578888866 45678999999961 1
Q ss_pred h----hhh---------------------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 158 A----EAL---------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 158 ~----~~~---------------------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
. +.. ....+++++.+.|+|||.+++..+. ....++.+++.+.+|..+.....
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHHHhCCCCceEEEeC
Confidence 0 000 1246789999999999998877654 34567888888888887776555
Q ss_pred cCCeeE
Q 027039 213 NGSNMT 218 (229)
Q Consensus 213 ~~~~~~ 218 (229)
..+..|
T Consensus 243 ~~~~~r 248 (251)
T TIGR03534 243 LAGKDR 248 (251)
T ss_pred CCCCcC
Confidence 544433
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.27 E-value=2.5e-11 Score=105.82 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC--------------eEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
...+|||+|||+|.++..+++. +..+++++|+++.++ .++.+|..+. .+++||+|++|.-.|.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccC
Confidence 3568999999999999999987 556999999997532 3566666542 3578999999843332
Q ss_pred -----h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 161 -----L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 161 -----~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
. ...++++++.+.|||||.++++....-.|. ..+.+.|+.++.+
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~-~~l~~~Fg~~~~l 323 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP-DLLDETFGSHEVL 323 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH-HHHHHHcCCeEEE
Confidence 1 357899999999999999998887655444 3455577665433
No 84
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.27 E-value=3.7e-11 Score=105.70 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=77.7
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC------------------eEEEcCCCCCCCCCCceeEEEcccc
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~------------------~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
+.+|||+|||+|..+..+++. +..+|+++|.|+.++ ++..+|..+. +++++||+|+||--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 469999999999999999987 566999999996622 3555555432 23568999999822
Q ss_pred h---hhh---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 158 A---EAL---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 158 ~---~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
. +.. ...+++.++.+.|||||.++++......|. ..+.+.|++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~-~~L~~~fg~~~~ 359 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYF-HKLKKIFGNCTT 359 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHH-HHHHHHcCCceE
Confidence 2 111 136789999999999999998876554443 556677876644
No 85
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=7.3e-11 Score=96.82 Aligned_cols=114 Identities=22% Similarity=0.236 Sum_probs=89.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------------------CCeEEEcCCCCCCCC-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------------------LPLVSRADPHNLPFF- 145 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------------------~~~~~~~d~~~~~~~- 145 (229)
..++.+||+.|||.|..+..|++.|+ +|+|+|+|+. .+++.++|+.+++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34678999999999999999999999 8999999865 235788898887632
Q ss_pred --CCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecCCc--------ccHHHHHHHHhc-CceeEee
Q 027039 146 --DEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECAG--------REIKQIVELFRT-SRFVDAA 208 (229)
Q Consensus 146 --~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~~--------~~~~~l~~l~~~-~~~~~~~ 208 (229)
.++||+|+-..+..++.| .+.++.+.++|+|||.+++++-..+. -+..++.++|.. +.+..+.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~ 196 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELID 196 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEee
Confidence 268999998877777744 67899999999999998887754321 146788889974 3554444
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.25 E-value=9.6e-11 Score=101.84 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=82.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...+++.+|||+|||+|.++...+..+. .++|+|+++.+ +.+.++|+.++|+.+++||+|+++-
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECC
Confidence 3457899999999999999988777765 99999999862 3578899999998888999999971
Q ss_pred c-------hhh-h--CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 157 L-------AEA-L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 157 ~-------~~~-~--~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
- ..+ . ...++++++.++|||||++++.+... .+ +.++++..++
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~---~~~~~~~~g~ 309 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--ID---LESLAEDAFR 309 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CC---HHHHHhhcCc
Confidence 1 111 1 24789999999999999998887652 23 3455666555
No 87
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.23 E-value=2.2e-10 Score=90.30 Aligned_cols=113 Identities=13% Similarity=0.046 Sum_probs=86.4
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC-CCCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL-PFFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~-~~~~~~fD~V~ 153 (229)
...+++++.++|||||+|..+..++.. +.++|+++|-+++ .+.++.+++.+. +- ..++|.||
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~-~~~~daiF 107 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD-LPSPDAIF 107 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC-CCCCCEEE
Confidence 345689999999999999999999955 6789999999887 445888887763 32 22799999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeee
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
...-. ....+++.+...|||||++++.+-. -++...+.+.+++.++.++.+
T Consensus 108 IGGg~---~i~~ile~~~~~l~~ggrlV~nait--lE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 108 IGGGG---NIEEILEAAWERLKPGGRLVANAIT--LETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred ECCCC---CHHHHHHHHHHHcCcCCeEEEEeec--HHHHHHHHHHHHHcCCceEEE
Confidence 86443 3788999999999999998766655 556666777777666633333
No 88
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.22 E-value=8.9e-12 Score=91.74 Aligned_cols=89 Identities=30% Similarity=0.371 Sum_probs=70.9
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCC--CCCCceeEEEcc--c
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEAFDVAFTA--H 156 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~--~ 156 (229)
|.+|||+|||+|.++..+++.+..+++|+|+++. .++++++|..+.. +++++||+|++| +
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999999999887459999999987 2468889988764 778999999998 2
Q ss_pred chhhh-------CHHHHHHHHHhccccCcEEEEEee
Q 027039 157 LAEAL-------FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 157 ~~~~~-------~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
..... ....+++++.+.|||||.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 22111 136789999999999999998775
No 89
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.22 E-value=1.5e-10 Score=93.29 Aligned_cols=103 Identities=16% Similarity=0.052 Sum_probs=72.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCC-CCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHN-LPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~-~~~~~~~fD~V~~~ 155 (229)
..+++.+|||+|||+|.++..++.. +.++|+++|+++.+ +.++.+|+.+ ++.....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 4468899999999999999999865 44699999999762 4577777754 22222345776653
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~ 200 (229)
.. ....++++++.+.|||||++++.... ......+.+.++
T Consensus 117 ~~---~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~ 156 (196)
T PRK07402 117 GG---RPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLA 156 (196)
T ss_pred CC---cCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHH
Confidence 21 24578999999999999998877654 334444555554
No 90
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.21 E-value=1.3e-10 Score=99.96 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=73.6
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
+.+...++++.+|||||||+|..+..+++. +..+++++|..+. .++++.+|+.+.++++ +|+
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~ 218 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADA 218 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCE
Confidence 333344578899999999999999999988 6669999997321 2458889988766543 699
Q ss_pred EEcccchhhhCH---HHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFP---SRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~ 183 (229)
|++.++.++.++ .++++++++.|||||++++.
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998877776633 56899999999999999866
No 91
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.21 E-value=1.4e-10 Score=95.00 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCC-CCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFF-DEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~-~~~fD~V~~~~~~~ 159 (229)
.+.+|||+|||+|..+..+++.+. +++++|+++.+ +.+...|+.+.+.. +++||+|++++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 478999999999999999988765 79999998652 44666777766544 37999999998888
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+. ++..+++++.+.|+|||.+++...
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 77 899999999999999999886653
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.20 E-value=1e-10 Score=95.72 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=68.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|..+.....++||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 4578999999999999999999987 3 346999999976 2457888887754445789999986
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.... .+...+.+.|||||++++.+..
T Consensus 154 ~~~~-----~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 154 AAGP-----KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCcc-----cccHHHHHhcCcCcEEEEEEcC
Confidence 4322 2345678899999998876543
No 93
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.20 E-value=5.9e-10 Score=88.67 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchhhhC
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~ 162 (229)
.-.++||+|||.|.++..|+.+ +.+++++|+++. .++++++|+.+. .++++||+|+.+.+.++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence 3468999999999999999999 569999999976 456899998775 3679999999998888773
Q ss_pred -H---HHHHHHHHhccccCcEEEEEeecC-------CcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 163 -P---SRFVGEMERTVKIGGVCMVLMEEC-------AGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 163 -~---~~~l~~~~~~LkpgG~lil~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
. ..++..+.+.|+|||.+++..-.. ....-+.+.++|++ .+.++..++-.|.+
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~-~~~~~~~~~~~~~~ 184 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQE-HLTEVERVECRGGS 184 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHH-HSEEEEEEEEE-SS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHH-HhhheeEEEEcCCC
Confidence 2 468899999999999988765431 12244556666653 45666666555544
No 94
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.18 E-value=1.3e-10 Score=95.29 Aligned_cols=111 Identities=20% Similarity=0.178 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~L 174 (229)
.....|.|+|||.+.++. .... .|...|+.+....++.+|+.++|++|++.|+++..-.+...+...++.|+.|+|
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiL 254 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERH-KVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRIL 254 (325)
T ss_pred cCceEEEecccchhhhhh---cccc-ceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHh
Confidence 567789999999998765 2234 899999999999999999999999999999999864444458899999999999
Q ss_pred ccCcEEEEEeecCCcccHHHHHHHHhcCceeEeee
Q 027039 175 KIGGVCMVLMEECAGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 175 kpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
||||.+++.--...-.+...+.+.+...+|...+.
T Consensus 255 k~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 255 KPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred ccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 99999987655556667888999999999876654
No 95
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.16 E-value=8.8e-11 Score=95.53 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=68.9
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
..++|+|||+|..++.+++. +.+|+|+|+|+.|++ +...+..++--.+++.|+|++....|.+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 38999999999888888988 559999999998654 2222222222238999999999888889
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+..++.+++.|+||++|.++.+..+.
T Consensus 114 dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99999999999999887544454443
No 96
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.9e-10 Score=95.18 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=89.7
Q ss_pred eEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC---------------eEEEcCCCCCCCCCCceeEEEcc--cchhh
Q 027039 99 KVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA--HLAEA 160 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~V~~~--~~~~~ 160 (229)
+|||+|||+|..+..++.. +..+|+|+|+|+..+ .++++|..+. . .++||+|++| ++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 7999999999999999998 667999999999722 2444443332 1 3489999999 33322
Q ss_pred ---h-------CH--------------HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc-eeEeeeeeecCC
Q 027039 161 ---L-------FP--------------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR-FVDAANVTVNGS 215 (229)
Q Consensus 161 ---~-------~~--------------~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~ 215 (229)
. +| .+++.++.+.|+|||.+++-.+. .+.+.+.++|.+.+ +..+......+.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~---~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL---TQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC---CcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 0 12 46678899999999998877775 34577888888888 677777777777
Q ss_pred eeEEEEEEec
Q 027039 216 NMTRILMRRT 225 (229)
Q Consensus 216 ~~~~~~~~~~ 225 (229)
..+.+..++.
T Consensus 268 ~~rv~~~~~~ 277 (280)
T COG2890 268 RDRVVLAKLR 277 (280)
T ss_pred ceEEEEEEec
Confidence 7677766554
No 97
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.15 E-value=1.9e-10 Score=94.17 Aligned_cols=117 Identities=24% Similarity=0.339 Sum_probs=84.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------------------CeEEEcCCCCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------------------PLVSRADPHNLPFF 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------------------~~~~~~d~~~~~~~ 145 (229)
..+++.+||..|||.|.....|++.|+ +|+|+|+|+.. +.+.++|+.+++..
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 457888999999999999999999998 99999999762 23677898887643
Q ss_pred C-CceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecCC---------cccHHHHHHHHh-cCceeEeeee
Q 027039 146 D-EAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFR-TSRFVDAANV 210 (229)
Q Consensus 146 ~-~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~---------~~~~~~l~~l~~-~~~~~~~~~~ 210 (229)
. ++||+|+=......+.| .+..+.+.++|||||.+++++-... .-+..++.++|. ..++..++..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~ 191 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEE 191 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecc
Confidence 3 58999998766665543 7889999999999999444432211 125678889998 3344444443
No 98
>PLN03075 nicotianamine synthase; Provisional
Probab=99.15 E-value=8.4e-10 Score=93.75 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCChhhHH-HH-hC-CCCeEEEecCCCC-----------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMA-FN-SI-GVADVTGVELMDS-----------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~-l~-~~-g~~~v~~vD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
.++.+|+|||||.|.++.. ++ .. +.++++++|++++ .+.|..+|+.+.+-..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3789999999998855444 33 23 6679999999975 356888998876433578999999
Q ss_pred ccchhh--hCHHHHHHHHHhccccCcEEEEEe
Q 027039 155 AHLAEA--LFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 155 ~~~~~~--~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
..+.+. .++.++++++.+.|+|||.+++-.
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 843333 268999999999999999977554
No 99
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.15 E-value=3.3e-10 Score=103.65 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcc--c
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA--H 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~--~ 156 (229)
++.+|||+|||+|..+..++.. +..+++++|+|+.+ +.++++|+.+ ++++++||+|++| +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 3568999999999999998876 66699999999762 3467777654 2335689999997 1
Q ss_pred chh---------h--------h--------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeee
Q 027039 157 LAE---------A--------L--------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 157 ~~~---------~--------~--------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
+.. . + ....+++++.+.|+|||.+++.++. .....+.+++.+.++..+....
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---KQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---chHHHHHHHHHhcCCCceEEEe
Confidence 110 0 0 1245678888999999998876654 3456677788777776555555
Q ss_pred ecCCeeEEEE
Q 027039 212 VNGSNMTRIL 221 (229)
Q Consensus 212 ~~~~~~~~~~ 221 (229)
......|.++
T Consensus 294 D~~g~~R~v~ 303 (506)
T PRK01544 294 DLQGHSRVIL 303 (506)
T ss_pred cCCCCceEEE
Confidence 5444445444
No 100
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.14 E-value=2.9e-10 Score=96.89 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcc--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA-- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~-- 155 (229)
+++.+|||+|||+|..+..++.. +..+++|+|+|+.+ +.++++|+.+. +++++||+|++|
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC
Confidence 34578999999999999999987 44599999999762 45788887542 345689999997
Q ss_pred cch--------hhh--C--------------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 156 HLA--------EAL--F--------------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 156 ~~~--------~~~--~--------------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
++. ... . ...+++++.+.|+|||++++.++. +...+.+++.+.++
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~~~~~ 267 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYPDVPF 267 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHHhCCC
Confidence 111 000 1 256788999999999998877764 33577888887654
No 101
>PRK06202 hypothetical protein; Provisional
Probab=99.14 E-value=1.4e-10 Score=95.86 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC----C-CCeEEEecCCCCCC------------eEEEcCCCCCCCCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI----G-VADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~----g-~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..+++. | ..+++|+|+++.++ .+...+...+++++++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 56789999999999998888752 2 24999999998743 3566677777777889999999988
Q ss_pred hhhh-CH--HHHHHHHHhccc
Q 027039 158 AEAL-FP--SRFVGEMERTVK 175 (229)
Q Consensus 158 ~~~~-~~--~~~l~~~~~~Lk 175 (229)
.+|+ ++ .++++++.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC
Confidence 8888 43 469999999998
No 102
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5e-10 Score=94.55 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC---------------eEEEcCCCCCCCCCCceeEEEcc---
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA--- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~V~~~--- 155 (229)
..+.+|||+|||.|..+..+++. |..+++-+|.+...+ .+...|..+-. ++ +||+|+||
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-~~-kfd~IisNPPf 234 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-EG-KFDLIISNPPF 234 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-cc-cccEEEeCCCc
Confidence 34559999999999999999999 778999999996521 35556655533 33 99999999
Q ss_pred cchhhhC---HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 156 HLAEALF---PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 156 ~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
|-..... .++++.+..+.|++||.+.++....-.| ...+.++|++++.+
T Consensus 235 h~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y-~~~L~~~Fg~v~~l 286 (300)
T COG2813 235 HAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPY-EKKLKELFGNVEVL 286 (300)
T ss_pred cCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCCh-HHHHHHhcCCEEEE
Confidence 2222221 3689999999999999999888843322 34577888865544
No 103
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.12 E-value=2.6e-10 Score=94.77 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=89.6
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCCCC---
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFF--- 145 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~--- 145 (229)
.++....+.||++|||.|.|+|.++.+|+.. +.++|+..|..++ .+.+.+.|+.+-.|.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 3344457799999999999999999999976 6789999999876 355889998765553
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhcc-ccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTV-KIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~L-kpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
++.+|.|+. .+. +|+.++..+.+.| ||||++++..++ -++...+.+.++..+|..++-++.
T Consensus 111 ~~~~DavfL-Dlp---~Pw~~i~~~~~~L~~~gG~i~~fsP~--ieQv~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 111 ESDFDAVFL-DLP---DPWEAIPHAKRALKKPGGRICCFSPC--IEQVQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp TTSEEEEEE-ESS---SGGGGHHHHHHHE-EEEEEEEEEESS--HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCcccEEEE-eCC---CHHHHHHHHHHHHhcCCceEEEECCC--HHHHHHHHHHHHHCCCeeeEEEEE
Confidence 368999987 333 4899999999999 999998877776 667778888888888888764433
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.12 E-value=2.5e-10 Score=100.31 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC--CCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL--PFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~ 156 (229)
..+..+||||||+|.++..++.. +...++|+|+++. .+.++++|+..+ .++++++|.|+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 34568999999999999999988 6679999999865 344888998764 47789999999863
Q ss_pred chhhh-------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEAL-------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~~-------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
-..+. ....++.++.|+|||||.+.+.++.
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 22111 1268999999999999999988776
No 105
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=4.8e-10 Score=92.23 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=94.8
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCcee
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD 150 (229)
.....+.++++|+|.|.|+|.++.+|+.. +.++|+..|+-+. .+.+..+|+.+.-+++ .||
T Consensus 87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vD 165 (256)
T COG2519 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVD 165 (256)
T ss_pred HHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccC
Confidence 44557899999999999999999999965 6689999999876 2446778888866654 999
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.|+. ...+|+++++.+.+.|||||.+++..++ .++.+...+..++.+|..++-++.
T Consensus 166 av~L----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~--veQv~kt~~~l~~~g~~~ie~~E~ 221 (256)
T COG2519 166 AVFL----DLPDPWNVLEHVSDALKPGGVVVVYSPT--VEQVEKTVEALRERGFVDIEAVET 221 (256)
T ss_pred EEEE----cCCChHHHHHHHHHHhCCCcEEEEEcCC--HHHHHHHHHHHHhcCccchhhhee
Confidence 9987 3335999999999999999998877776 667777778888778877775544
No 106
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.10 E-value=4.6e-10 Score=91.91 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++.+|||+|||+|.++..++..+. +++|+|+++.+ +.+.++|+.+.+ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 35689999999999999999998865 99999999763 347778877765 78999999877
Q ss_pred hhhh---CHHHHHHHHHhccccCcEEE
Q 027039 158 AEAL---FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 158 ~~~~---~~~~~l~~~~~~LkpgG~li 181 (229)
..+. ....+++++.+++++++.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 6655 24678899999888766544
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.10 E-value=7e-10 Score=90.43 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=67.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++++.+|||+|||+|..+..++... .+++++|+++.+ ++++.+|..+.....++||+|++...
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45788999999999999999888874 489999998762 45778887553223578999998753
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.. .+.+++.+.|+|||.+++.+.
T Consensus 154 ~~-----~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 AP-----EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ch-----hhhHHHHHhcCCCcEEEEEEc
Confidence 33 234567889999999987776
No 108
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.08 E-value=5.7e-10 Score=78.50 Aligned_cols=85 Identities=33% Similarity=0.412 Sum_probs=69.5
Q ss_pred eEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCC-CCCceeEEEcccchhh-h
Q 027039 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPF-FDEAFDVAFTAHLAEA-L 161 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~~~~~~-~ 161 (229)
+++|+|||.|..+..+++.+..+++++|+++. .+.+...|..+... ..++||+|+++...++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 58999999999999998865569999999865 23477777777553 5678999999977665 4
Q ss_pred -CHHHHHHHHHhccccCcEEEEE
Q 027039 162 -FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 -~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.+..+++.+.+.+||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 6788999999999999998865
No 109
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.07 E-value=1.2e-09 Score=93.78 Aligned_cols=93 Identities=11% Similarity=0.042 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCCCC----------------eEEEcCCCC-CCCCCC----ceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSLP----------------LVSRADPHN-LPFFDE----AFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~~~----------------~~~~~d~~~-~~~~~~----~fD~ 151 (229)
.++.+|||+|||+|..+..+++.. ..+++++|+|+.++ .++++|+.+ .++... ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 577899999999999999998872 34999999998732 256888876 344332 2334
Q ss_pred EEcccchhhhC---HHHHHHHHHhccccCcEEEEEeecC
Q 027039 152 AFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 152 V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+++.....++. ..+++++++++|+|||.+++-++..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 44444444443 4678999999999999998777653
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.07 E-value=1.8e-09 Score=90.47 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------CeEEEcCCCCC-C-CCCCceeEEEcc--cch
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------PLVSRADPHNL-P-FFDEAFDVAFTA--HLA 158 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------~~~~~~d~~~~-~-~~~~~fD~V~~~--~~~ 158 (229)
++.+|||+|||+|.++..++.. +..+++++|+++.+ ..++++|+.+. + ...++||+|++| ++.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3468999999999999999876 44599999999873 34788887653 2 113579999998 221
Q ss_pred h------------h-----hC--------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEee
Q 027039 159 E------------A-----LF--------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 159 ~------------~-----~~--------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
. + ++ ..+++..+.+.|||||++++.+.. ....++.+++++.++....
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHHHHHHHHHCCCCcee
Confidence 0 0 00 246778888999999999977764 3456778888776664433
No 111
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.07 E-value=8.3e-10 Score=95.04 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=76.8
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc--cch
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA--HLA 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~~~ 158 (229)
.+|||+|||+|..+..++.. +..+|+++|+|+. .+.++++|+.+. +++++||+|++| ++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 68999999999999999987 5569999999976 245888887542 235689999997 111
Q ss_pred --------hh---------------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE
Q 027039 159 --------EA---------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD 206 (229)
Q Consensus 159 --------~~---------------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~ 206 (229)
.. + ....+++++.+.|+|||.+++.+.. +..++.++|.+.++.-
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----~~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----SRVHLEEAYPDVPFTW 281 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHhhCCCEE
Confidence 00 0 1256789999999999998876664 2345788887755433
No 112
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.07 E-value=1.5e-09 Score=88.09 Aligned_cols=120 Identities=23% Similarity=0.223 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCC--CCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNL--PFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~--~~~~~~fD~V~~~ 155 (229)
+.+.+|||.+.|-|+.++...++|...|+.++.++. .++++.+|..+. .|.|.+||+|+..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 569999999999999999999999879999998887 345788888773 4889999999986
Q ss_pred ----cchhhhCHHHHHHHHHhccccCcEEEEEeecCC-----cccHHHHHHHHhcCceeEeeeeeecC
Q 027039 156 ----HLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-----GREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 156 ----~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
....+++..++.+|++|+|||||+++=.+++.+ -+-...+.+.++..+|..+..+...+
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREAL 280 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhcc
Confidence 344455779999999999999999886676643 44567788999999999888775544
No 113
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.03 E-value=4.5e-10 Score=100.14 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=63.1
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---CCeEE----------EcCCCCCCCCCCceeEEEccc--chhhhC
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---LPLVS----------RADPHNLPFFDEAFDVAFTAH--LAEALF 162 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---~~~~~----------~~d~~~~~~~~~~fD~V~~~~--~~~~~~ 162 (229)
..+||||||.|.++.+|.+++. .+..+-++.. .++|. ..-.+.+||++++||+|+|.. +.++.+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhc
Confidence 4689999999999999999976 3434333322 22211 112456899999999999984 445554
Q ss_pred HHHHHHHHHhccccCcEEEEEeec
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
-.-++-++-|+|+|||++++....
T Consensus 198 ~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 198 DGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred ccceeehhhhhhccCceEEecCCc
Confidence 456889999999999998866554
No 114
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.5e-09 Score=87.37 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=71.9
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
.+++...++++.+|||||||+|+.+.-+++... +|+.+|..+. .+.++++|...---+..+||.
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~ 141 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDR 141 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCE
Confidence 334444779999999999999999999999943 9999999876 366889998873224689999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|+........ | +.+.+.|||||++++.+..
T Consensus 142 I~Vtaaa~~v-P----~~Ll~QL~~gGrlv~PvG~ 171 (209)
T COG2518 142 IIVTAAAPEV-P----EALLDQLKPGGRLVIPVGS 171 (209)
T ss_pred EEEeeccCCC-C----HHHHHhcccCCEEEEEEcc
Confidence 9986332211 2 3356779999999988883
No 115
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.02 E-value=1.6e-10 Score=93.31 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=87.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------EEEcCCCC-CC-CCCCceeEEEcccchh
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHN-LP-FFDEAFDVAFTAHLAE 159 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------~~~~d~~~-~~-~~~~~fD~V~~~~~~~ 159 (229)
....+-.++||+|||||..+.++..+- .+++|+|+|.+|+. ..+++... ++ ..+..||+|++..+..
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 333456799999999999999999984 49999999999765 22333322 11 3568999999998888
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCC-------------cccHHHHHHHHhcCceeEee
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~-------------~~~~~~l~~l~~~~~~~~~~ 208 (229)
.+ ....++......|+|||.+.+.+.... +++..-+.+....+++.-+.
T Consensus 200 YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 200 YLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred hhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 88 889999999999999999999887643 22444566677766655443
No 116
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.02 E-value=6e-10 Score=90.64 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=66.4
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
++...++++.+|||||||+|+.+..++.. | .+.|+++|..+. .+.++.+|...-.-...+||.
T Consensus 65 l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~ 144 (209)
T PF01135_consen 65 LEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDR 144 (209)
T ss_dssp HHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEE
T ss_pred HHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCE
Confidence 33335799999999999999999999988 4 457999999987 456889997763334578999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|++...... .| ..+.+.||+||++++.+..
T Consensus 145 I~v~~a~~~-ip----~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 145 IIVTAAVPE-IP----EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EEESSBBSS-------HHHHHTEEEEEEEEEEESS
T ss_pred EEEeeccch-HH----HHHHHhcCCCcEEEEEEcc
Confidence 998743331 12 4477789999999987775
No 117
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.00 E-value=5.4e-09 Score=85.88 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++.+|||||||+|..+..+++.+. .++|+|+++.+ +.+..+|. +..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcch
Confidence 35678999999999999999998876 79999998763 34666663 334688999999877
Q ss_pred hhhh---CHHHHHHHHHhccccCcE
Q 027039 158 AEAL---FPSRFVGEMERTVKIGGV 179 (229)
Q Consensus 158 ~~~~---~~~~~l~~~~~~LkpgG~ 179 (229)
.+|. ....+++++.+.+++++.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 7664 235677888776654443
No 118
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.99 E-value=1.7e-09 Score=89.46 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhh-CHHHHHH
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVG 168 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~l~ 168 (229)
...++||||+|.|..+..++.. +.+|+++|.|+.|.. +...+..++.-.+.+||+|.|-++...- .|..+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 4568999999999999999887 679999999988533 3333444444345789999998765544 9999999
Q ss_pred HHHhccccCcEEEEEe
Q 027039 169 EMERTVKIGGVCMVLM 184 (229)
Q Consensus 169 ~~~~~LkpgG~lil~~ 184 (229)
+|++.|+|+|++++.+
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999988774
No 119
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.98 E-value=7e-09 Score=82.71 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=85.5
Q ss_pred HHHHHHHhcccCCCCC-eEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCC
Q 027039 83 HFFKHLQGKSLLFNHS-KVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~-~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~ 145 (229)
+++..+.-...+.... +++|||+|.|..++.++-. +..+++.+|.+.. .+.++++++++ +..
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~ 112 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEY 112 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTT
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-ccc
Confidence 4445554444555544 8999999999999999987 7779999999876 45688888888 445
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcC
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~ 202 (229)
..+||+|++..+.. ...++.-+.+.+++||.+++.-+....++..+....++..
T Consensus 113 ~~~fd~v~aRAv~~---l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~ 166 (184)
T PF02527_consen 113 RESFDVVTARAVAP---LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKL 166 (184)
T ss_dssp TT-EEEEEEESSSS---HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCC
T ss_pred CCCccEEEeehhcC---HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHh
Confidence 78999999988777 7888899999999999988776654444555555555533
No 120
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.97 E-value=1.3e-08 Score=81.82 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=89.7
Q ss_pred CCCC-eEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC----------------eEEEcCCCCC--CC------CCCc
Q 027039 95 FNHS-KVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNL--PF------FDEA 148 (229)
Q Consensus 95 ~~~~-~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~----------------~~~~~d~~~~--~~------~~~~ 148 (229)
.+.. +|||||||+|..+..+++. +.....-.|+++... .-+..|+.+- +. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 5999999999999999988 766777788876621 1233454443 32 2469
Q ss_pred eeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeecC--C----------------------cccHHHHHHHHhc
Q 027039 149 FDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC--A----------------------GREIKQIVELFRT 201 (229)
Q Consensus 149 fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~--~----------------------~~~~~~l~~l~~~ 201 (229)
||.|++.++.|... -..+++.+.++|+|||.+++.-+.. + --+++.+.++...
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 99999998888773 3778999999999999988663331 1 1145566667777
Q ss_pred CceeEeeeeeecCCeeEEEEEEe
Q 027039 202 SRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
.++.-...+.-+.-. ..++|+|
T Consensus 183 ~GL~l~~~~~MPANN-~~Lvfrk 204 (204)
T PF06080_consen 183 HGLELEEDIDMPANN-LLLVFRK 204 (204)
T ss_pred CCCccCcccccCCCC-eEEEEeC
Confidence 777777777666665 4455543
No 121
>PRK04457 spermidine synthase; Provisional
Probab=98.96 E-value=4.3e-09 Score=88.66 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCC-CCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNL-PFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~-~~~~~~fD~V~~~~ 156 (229)
.++.+|||||||+|..+..++.. +..+++++|+++.. +.++.+|+.+. .-..++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 46789999999999999999877 66799999998772 34677776542 22246899999864
Q ss_pred chhh-----hCHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEA-----LFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~-----~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+... +...++++++.+.|+|||.+++.+-.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3221 22378999999999999998875443
No 122
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.94 E-value=3.2e-09 Score=91.57 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------------------eEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------------LVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------------------~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.++ .+..+|+.++ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 578999999999999999999876 999999998743 2444554433 5789999998
Q ss_pred cchhhh-CH--HHHHHHHHhccccCcEEE
Q 027039 156 HLAEAL-FP--SRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 156 ~~~~~~-~~--~~~l~~~~~~LkpgG~li 181 (229)
.+.+|. +. ..+++.+.+ +.+||.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 776665 21 345555554 45665544
No 123
>PRK00811 spermidine synthase; Provisional
Probab=98.94 E-value=6.8e-09 Score=88.43 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------------CeEEEcCCCC-CCCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------------PLVSRADPHN-LPFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------------~~~~~~d~~~-~~~~~~~fD~V 152 (229)
.++.+||+||||.|..+..+.+. +..+|+++|+++.+ ++++.+|+.. +...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45789999999999999999887 67799999999872 2366677655 22346799999
Q ss_pred Ecccch-----hhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++.... .++...++++.+.+.|+|||.+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 986322 122347889999999999999886544
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.94 E-value=5.7e-09 Score=90.20 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=67.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||||||+|..+..+++. + .+.|+++|+++.+ +.++++|..+.+...++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 4578899999999999999999887 3 2479999999862 457788877655555789999986
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.... .....+.+.|+|||++++....
T Consensus 157 ~g~~-----~ip~~~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 157 VGVD-----EVPETWFTQLKEGGRVIVPINL 182 (322)
T ss_pred CchH-----HhHHHHHHhcCCCCEEEEEeCC
Confidence 3322 1233567899999998876643
No 125
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=5.4e-09 Score=94.45 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcc-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA- 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~- 155 (229)
..++.+|||+|||+|..+..+++. +.++|+++|+++.+ +.++.+|+.+++ ++++||.|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 367899999999999999888875 34599999999872 457788888765 46789999963
Q ss_pred ------cch------hhhC----------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 156 ------HLA------EALF----------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 156 ------~~~------~~~~----------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.+. +... ..+++.++.+.|||||+++..+-.-
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 111 1111 2468999999999999988776543
No 126
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=5.8e-09 Score=93.97 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCC----CCCCceeEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLP----FFDEAFDVA 152 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~----~~~~~fD~V 152 (229)
.+++.+|||+|||+|..+..+++. +.+.|+++|+++. .+.++.+|+.+++ +.+++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 467899999999999999999886 3469999999986 2457788888765 446789999
Q ss_pred Eccc------ch-hhhC----------------HHHHHHHHHhccccCcEEEEEeecCC-cccHHHHHHHHh
Q 027039 153 FTAH------LA-EALF----------------PSRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFR 200 (229)
Q Consensus 153 ~~~~------~~-~~~~----------------~~~~l~~~~~~LkpgG~lil~~~~~~-~~~~~~l~~l~~ 200 (229)
++.. +. ++.+ ..+++.++.+.|||||+++..+-.-. .+....+..+.+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~ 401 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA 401 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence 9741 11 1001 35789999999999999876653322 233333444444
No 127
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=4.7e-09 Score=85.57 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=65.7
Q ss_pred eEEEEcCCCChhhHHHHhC-CC--CeEEEecCCCCCCe--------------EEEcCCC----CCCCCCCceeEEEcccc
Q 027039 99 KVLCVSAGAGHEVMAFNSI-GV--ADVTGVELMDSLPL--------------VSRADPH----NLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~-g~--~~v~~vD~s~~~~~--------------~~~~d~~----~~~~~~~~fD~V~~~~~ 157 (229)
+||+||||.|.....+.+. +. -.+.++|.|+..++ .-..|+. .-|.+.+++|+|++..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999998888766 32 58999999998544 1122222 23466799999999988
Q ss_pred hhhhCH---HHHHHHHHhccccCcEEEEE
Q 027039 158 AEALFP---SRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 158 ~~~~~~---~~~l~~~~~~LkpgG~lil~ 183 (229)
...+.| ..++.++.++|||||.+++-
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 777755 67899999999999997744
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.92 E-value=4.6e-09 Score=88.60 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+++.+|||+|||+|..+..+++. +.+.|+++|+++.+ +.+++.|....+...+.||.|+++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 478899999999999999998876 34689999999872 3477778776655556799999741
Q ss_pred ----c--h-h------hh----------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 ----L--A-E------AL----------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ----~--~-~------~~----------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. . . .. ...+++.++.+.|||||+++..+-.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 0 0 0 00 1245889999999999998766544
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=4.8e-09 Score=94.35 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=72.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCC-CCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLP-FFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~-~~~~~fD~V~~ 154 (229)
..+++.+|||+|||+|..+..+++. +.++|+++|+++.+ +.++++|+..++ +.+++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3478899999999999999999886 35699999999872 357788888765 45678999997
Q ss_pred cc----ch---------hhh----------CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 155 AH----LA---------EAL----------FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 155 ~~----~~---------~~~----------~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
.. .. +.. ...+++.++.+.|||||.++..+-.-.
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 41 11 010 125678999999999999876665533
No 130
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=7.4e-09 Score=93.10 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCC--CCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLP--FFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~--~~~~~fD~V~~~~ 156 (229)
.+++.+|||+|||+|..+..+++. +.+.|+++|+++.+ +.++.+|+.+.+ +.+++||.|+++.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 468899999999999999999987 33699999999872 347888988754 3457899999641
Q ss_pred ----c---------hhhhC----------HHHHHHHHHhccccCcEEEEEeec-CCcccHHHHHHHHh
Q 027039 157 ----L---------AEALF----------PSRFVGEMERTVKIGGVCMVLMEE-CAGREIKQIVELFR 200 (229)
Q Consensus 157 ----~---------~~~~~----------~~~~l~~~~~~LkpgG~lil~~~~-~~~~~~~~l~~l~~ 200 (229)
. .+... ..+++.++.+.|||||+++..+-. ...++...+....+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA 389 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence 1 01111 246899999999999998876643 22333344444444
No 131
>PHA03411 putative methyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=85.81 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------CeEEEcCCCCCCCCCCceeEEEcccchhhh--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-- 161 (229)
..+.+|||+|||+|.++..++.. +..+|+++|+++.+ +.++++|+.+... +.+||+|++|.-..+.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINT 141 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCc
Confidence 35679999999999999988776 33599999999873 4488889888653 5689999998211111
Q ss_pred -------------------CHHHHHHHHHhccccCcEEEEEeecCC----cccHHHHHHHHhcCceeE
Q 027039 162 -------------------FPSRFVGEMERTVKIGGVCMVLMEECA----GREIKQIVELFRTSRFVD 206 (229)
Q Consensus 162 -------------------~~~~~l~~~~~~LkpgG~lil~~~~~~----~~~~~~l~~l~~~~~~~~ 206 (229)
...+++......|+|+|.++++.+... .-+..+-..+.+..+|+.
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 024677888899999999888876632 234556666666666653
No 132
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.89 E-value=6.5e-09 Score=93.42 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=68.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC--------------eE--EEcCCCCCCC--CCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LV--SRADPHNLPF--FDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~--------------~~--~~~d~~~~~~--~~~~fD~V~~ 154 (229)
.+++.+|||+|||+|..+..+++. +.++++|+|+++.++ .+ ..+|....++ .+++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 467899999999999999999886 556999999998732 12 4456554443 4678999996
Q ss_pred c------cchhhh-------C----------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 155 A------HLAEAL-------F----------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~------~~~~~~-------~----------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
. .+.+.. . ..+++.++.++|||||.++..+-.-
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 4 111110 1 2578999999999999988766553
No 133
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=3.5e-08 Score=80.25 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCc-eeEEEcccchh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEA-FDVAFTAHLAE 159 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~-fD~V~~~~~~~ 159 (229)
+.+++|||+|.|..+..++-. +..+++-+|...+ .+.++++.+++..- +.. ||+|.+..+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeehccc
Confidence 689999999999999999954 6668999999987 35688888888652 223 99999988777
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh--cCceeEeeeeeecCCeeEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR--TSRFVDAANVTVNGSNMTRIL 221 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~ 221 (229)
...+..-....+|+||.+++.......+...+...... ...+.++..++.+.+...+++
T Consensus 147 ---L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l 207 (215)
T COG0357 147 ---LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHL 207 (215)
T ss_pred ---hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEE
Confidence 77778888899999999775555554555555554444 667888888888877533333
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.85 E-value=7.3e-09 Score=81.51 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=66.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.+.++.+|||+|||+|.++..+++.+ .+++++|+++. .++++++|+.++++++.+||.|++|--.+
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 45678899999999999999999985 59999999975 35688999999888777899999973222
Q ss_pred hhCHHHHHHHHHhc--cccCcEEEEEee
Q 027039 160 ALFPSRFVGEMERT--VKIGGVCMVLME 185 (229)
Q Consensus 160 ~~~~~~~l~~~~~~--LkpgG~lil~~~ 185 (229)
. ..+.+..+.+. +.++|.+++-..
T Consensus 89 -~-~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 89 -I-STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred -c-HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 1 12334444432 346777665543
No 135
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.82 E-value=1.2e-08 Score=82.33 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=77.4
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCC-CC--CCCCceeEEEcccch
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHN-LP--FFDEAFDVAFTAHLA 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~-~~--~~~~~fD~V~~~~~~ 158 (229)
..+||||||.|.+...+|.. +...++|+|+... .+.++++|+.. +. ++++++|-|+.++-.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999988 7779999999976 45588999888 32 567999999987321
Q ss_pred h-----h----hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc--CceeEe
Q 027039 159 E-----A----LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT--SRFVDA 207 (229)
Q Consensus 159 ~-----~----~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~--~~~~~~ 207 (229)
- | +.-.+++..+++.|+|||.+.+.++. ..-.....+.+.. ..|..+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhcCcCeEEc
Confidence 1 1 12378999999999999998877775 3334445566665 244444
No 136
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=2.3e-08 Score=90.37 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCC--CCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLP--FFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~--~~~~~fD~V~~ 154 (229)
.+++.+|||+|||+|..+..+++. +.++|+++|+++.+ +.++++|+.+.+ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 367889999999999999999876 45699999999762 458888987753 33 78999997
Q ss_pred ccc-------hh------hhC----------HHHHHHHHHhccccCcEEEEEeec
Q 027039 155 AHL-------AE------ALF----------PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~~~-------~~------~~~----------~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.- .+ ... ..+++.++.+.|||||.++..+-.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 511 00 001 145789999999999998755433
No 137
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=1.1e-07 Score=78.94 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCC----C-CCCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPH----N-LPFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~----~-~~~~~~~fD~V 152 (229)
..+..+||+|||+|..+..++.. +.+.++|+|.|+. ++.+++-+.+ . .+..++++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 35568999999999999999877 7779999999987 3345533332 2 33557899999
Q ss_pred Ecc--cchhhh----C---------------------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 153 FTA--HLAEAL----F---------------------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 153 ~~~--~~~~~~----~---------------------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
++| ++..-- . ...++.-+.|.|+|||++.+.+.+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 999 221100 0 1245677889999999999888753
No 138
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.78 E-value=1.5e-08 Score=81.60 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCChhhHHHH----h---C--C-CCeEEEecCCCC----------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFN----S---I--G-VADVTGVELMDS---------------------------------- 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~----~---~--g-~~~v~~vD~s~~---------------------------------- 130 (229)
....+|+..||++|..+-.+| + . + .-+++|+|+++.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 366899999999997655543 3 1 2 238999999986
Q ss_pred ---------CCeEEEcCCCCCCCCCCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeec
Q 027039 131 ---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 131 ---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++.|.+.|..+.+...+.||+|+|.++.-++++ .++++.+++.|+|||.+++-..+
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 334778888773345689999999998888854 67999999999999998865554
No 139
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.78 E-value=1.4e-08 Score=79.25 Aligned_cols=53 Identities=26% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCeEEEcCCCCCCCCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 131 LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 131 ~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.++++++|+.++|+++++||+|++....++. ++.+++++++|+|||||.+++.
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 3679999999999999999999998877776 8999999999999999998755
No 140
>PRK03612 spermidine synthase; Provisional
Probab=98.77 E-value=3.2e-08 Score=91.06 Aligned_cols=110 Identities=22% Similarity=0.260 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCC-CCeEEEecCCCCC----------------------CeEEEcCCCC-CCCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSL----------------------PLVSRADPHN-LPFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~~----------------------~~~~~~d~~~-~~~~~~~fD 150 (229)
+++.+|||||||+|..+..+.+.+ ..+++++|+++++ ++++.+|..+ +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 567899999999999999998874 3699999998762 2355566554 222357899
Q ss_pred EEEcccchh------hhCHHHHHHHHHhccccCcEEEEEeecC--CcccHHHHHHHHhcCce
Q 027039 151 VAFTAHLAE------ALFPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSRF 204 (229)
Q Consensus 151 ~V~~~~~~~------~~~~~~~l~~~~~~LkpgG~lil~~~~~--~~~~~~~l~~l~~~~~~ 204 (229)
+|+++.... ++...++++.+.+.|||||.+++..... ......++.+.+++.+|
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999973221 2244679999999999999988655322 22334456666667666
No 141
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.77 E-value=3.1e-08 Score=88.02 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------CeEEEcCCCCCC--C--CCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLP--F--FDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~--~--~~~~fD~V~ 153 (229)
.++.+|||+|||+|.++...+..|..+|+++|+++.+ +.++++|+.+.- + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5688999999999999988776677799999999761 347788876631 1 246899999
Q ss_pred cc--cchh-------hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHH
Q 027039 154 TA--HLAE-------AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (229)
Q Consensus 154 ~~--~~~~-------~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~ 199 (229)
++ ++.. .. ...+++..+.+.|+|||.++++. +....+.+.+.+..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s-cs~~~~~~~f~~~v 353 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS-CSGLMTSDLFQKII 353 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe-CCCcCCHHHHHHHH
Confidence 98 2111 11 23556677889999999988443 44444545555443
No 142
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.76 E-value=5.7e-08 Score=84.35 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------------------CeEEEcCCCCCC----CC-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------------------PLVSRADPHNLP----FF- 145 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------------------~~~~~~d~~~~~----~~- 145 (229)
++.+|||+|||-|....-....+...++|+|++... ..++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 889999999999988888877788899999999762 126777765421 23
Q ss_pred -CCceeEEEcccchhhh--C---HHHHHHHHHhccccCcEEEEEeec
Q 027039 146 -DEAFDVAFTAHLAEAL--F---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 -~~~fD~V~~~~~~~~~--~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..+||+|-|-...|+. . ...+++++...|||||.++..+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 3599999997555544 2 366999999999999999977775
No 143
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.75 E-value=7.2e-08 Score=80.05 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=71.7
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
...+.+..+|+|||+|+|.++.++++. |..+++..|.... .++++.+|+. -+++. +|+++..++.|..
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhc
Confidence 344567789999999999999999988 7779999998532 5779999998 55554 9999999988877
Q ss_pred CH---HHHHHHHHhccccC--cEEEEEe
Q 027039 162 FP---SRFVGEMERTVKIG--GVCMVLM 184 (229)
Q Consensus 162 ~~---~~~l~~~~~~Lkpg--G~lil~~ 184 (229)
.+ .++++++++.|+|| |+++|+=
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 43 67899999999999 9988653
No 144
>PLN02672 methionine S-methyltransferase
Probab=98.75 E-value=3.9e-08 Score=96.13 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=77.8
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------------------CeEEEcCCCCCCC
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------------------PLVSRADPHNLPF 144 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------------------~~~~~~d~~~~~~ 144 (229)
+.+|||+|||+|..+..++.. +..+++|+|+|+.+ +.++++|..+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 568999999999999999987 55699999999761 3567777765321
Q ss_pred C-CCceeEEEcc--cchh--------------------------hhC-----------HHHHHHHHHhccccCcEEEEEe
Q 027039 145 F-DEAFDVAFTA--HLAE--------------------------ALF-----------PSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 145 ~-~~~fD~V~~~--~~~~--------------------------~~~-----------~~~~l~~~~~~LkpgG~lil~~ 184 (229)
. ..+||+|++| ++.. .++ ..+++.++.+.|||||.+++-+
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 2379999999 2210 001 1567788889999999988888
Q ss_pred ecCCcccHHHHH-HHHhcCceeEeee
Q 027039 185 EECAGREIKQIV-ELFRTSRFVDAAN 209 (229)
Q Consensus 185 ~~~~~~~~~~l~-~l~~~~~~~~~~~ 209 (229)
+... -+.+. ++|...+|..+..
T Consensus 279 G~~q---~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 279 GGRP---GQAVCERLFERRGFRITKL 301 (1082)
T ss_pred CccH---HHHHHHHHHHHCCCCeeEE
Confidence 7644 34566 5777655544433
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=98.74 E-value=2e-08 Score=82.52 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhC----CCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcc--cc--
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTA--HL-- 157 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~----g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~--~~-- 157 (229)
.+.+|||+|||+|.++..++.. +..+|+++|+++. ...++++|+...++ +++||+|++| +.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 4679999999999999998764 3458999999987 34588899887665 5799999999 11
Q ss_pred ------hhh---hCHHHHHHHHHhccccCcE
Q 027039 158 ------AEA---LFPSRFVGEMERTVKIGGV 179 (229)
Q Consensus 158 ------~~~---~~~~~~l~~~~~~LkpgG~ 179 (229)
..+ .....+++.+.+++++|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 111 1246688888886666665
No 146
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.74 E-value=6.9e-08 Score=81.71 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe-------------------EEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~V~ 153 (229)
+.+.+||+||||+|..+..+.+. +..+++++|+++..++ ++.+|..+ +.-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999999999888877 4678999999977322 33444332 111246899999
Q ss_pred cccchh-----hhCHHHHHHHHHhccccCcEEEEEee
Q 027039 154 TAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~~-----~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+..... .+...++++.+.+.|+|||.+++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 864311 12246889999999999999886643
No 147
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.2e-07 Score=73.84 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=79.0
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----CCeEEEcCCCCCC--------CCCCceeEEEccc-
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAH- 156 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~- 156 (229)
..++++..|+|+|+-+|.+++.+++. + ...|+|+|+.|. .+.++++|+++-+ +....+|+|+|..
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 45689999999999999999999988 3 346999999986 4669999998754 3345679999761
Q ss_pred --------chhhh--CH-HHHHHHHHhccccCcEEEEEeecCCcc--cHHHHHHHHhcCceeEeee
Q 027039 157 --------LAEAL--FP-SRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 157 --------~~~~~--~~-~~~l~~~~~~LkpgG~lil~~~~~~~~--~~~~l~~l~~~~~~~~~~~ 209 (229)
+.+.. .. ..++.-+..+|+|||.+++-+-..+.+ -...+...|+.....+...
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~a 186 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKA 186 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCcc
Confidence 12211 11 345566667999999987655443322 2333444555444444433
No 148
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.73 E-value=2.5e-08 Score=85.54 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=71.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
..+-.+..|||||||+|.++..-++.|..+|.|+|.|.. .++++++.++++-+|..+.|+|++-.
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 345678999999999999999999999999999999865 46689999998766678999999976
Q ss_pred chhhhCHHH----HHHHHHhccccCcEEE
Q 027039 157 LAEALFPSR----FVGEMERTVKIGGVCM 181 (229)
Q Consensus 157 ~~~~~~~~~----~l~~~~~~LkpgG~li 181 (229)
+...+..+. .+-.=-+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 665553333 3334447899999754
No 149
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.72 E-value=6.7e-08 Score=80.12 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC-C-----CCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL-P-----FFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-----~~~~~fD 150 (229)
.++.+|||+|||+|.-+..++.. +.++++++|+++. .++++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 57889999999999988888765 4679999999987 245788887663 1 1246899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+|+...-. .....++..+.+.|||||.+++
T Consensus 147 ~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 147 FAFVDADK--PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 99985321 1245788899999999998664
No 150
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=2e-08 Score=81.91 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe-------------------EEEc-----------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRA----------------- 137 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------------------~~~~----------------- 137 (229)
..+..+|||||-+|..+..+++. |...+.|+||++..++ +..+
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 56788999999999999999998 8889999999976111 0000
Q ss_pred ---CC---------------C-CCCCCCCceeEEEcc------cchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 138 ---DP---------------H-NLPFFDEAFDVAFTA------HLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 138 ---d~---------------~-~~~~~~~~fD~V~~~------~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+ . -+.+....||+|+|- |+.|+- -...+++.+.++|.|||.+++-
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 0 011335689999986 445554 3588999999999999997754
No 151
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.71 E-value=2.4e-07 Score=77.90 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=102.4
Q ss_pred cccCchhHHhhhhhHHHHHHHHHhcc----cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------
Q 027039 67 RLWSSKSWKQQVTSYAHFFKHLQGKS----LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------- 131 (229)
Q Consensus 67 ~~~~~~~w~~~~~~~~~~~~~l~~~~----~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------- 131 (229)
+-|+...-.++...+..++..|...- .-+...+||--|||.|.++..++..|+ .+.|.|.|--|
T Consensus 23 RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~ 101 (270)
T PF07942_consen 23 RDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHC 101 (270)
T ss_pred hhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHccc
Confidence 45766554555556666666654322 124567999999999999999999999 99999998531
Q ss_pred --------------------------------------------CeEEEcCCCCCCCCC---CceeEEEcccchhhh-CH
Q 027039 132 --------------------------------------------PLVSRADPHNLPFFD---EAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 132 --------------------------------------------~~~~~~d~~~~~~~~---~~fD~V~~~~~~~~~-~~ 163 (229)
.....||+.+...++ ++||+|++.++.... +.
T Consensus 102 ~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni 181 (270)
T PF07942_consen 102 SQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENI 181 (270)
T ss_pred CCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHH
Confidence 115566666654444 799999999877777 88
Q ss_pred HHHHHHHHhccccCcEEEEEeec-------C-------CcccHHHHHHHHhcCceeEeeee
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEE-------C-------AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~-------~-------~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.+.+..|.++|||||. ++.++- . -+-+.+++.++..+.+|.-+.+-
T Consensus 182 ~~Yi~tI~~lLkpgG~-WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 182 IEYIETIEHLLKPGGY-WINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHHHHHHHHhccCCE-EEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 9999999999999995 335432 1 13367889999888777766653
No 152
>PLN02366 spermidine synthase
Probab=98.68 E-value=1.2e-07 Score=81.67 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------CeEEEcCCCCC-C-CCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHNL-P-FFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------~~~~~~d~~~~-~-~~~~~fD~V 152 (229)
.++.+||+||||.|..+..+++. +..+|+.+|+++.. ++++.+|+... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 56789999999999999999887 56789999998752 33666775432 1 235689999
Q ss_pred Ecccch-----hhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
++.... .++.-.++++.+.+.|+|||.++...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 986322 22234689999999999999976543
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.65 E-value=9.9e-08 Score=90.76 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------CeEEEcCCCCCC-CCCCceeEEEcc-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLP-FFDEAFDVAFTA- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~-~~~~~fD~V~~~- 155 (229)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+ +.++++|+.+.. -..++||+|+++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4688999999999999999999887689999999772 347788876521 114689999997
Q ss_pred -cch---------hhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 -HLA---------EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 -~~~---------~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+. ... +..+++..+.+.|+|||.+++....
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 221 111 3467888899999999998765543
No 154
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.64 E-value=2e-07 Score=73.75 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=67.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-----------------CCeEEEcCCCC-C--C-CCCCcee
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-----------------LPLVSRADPHN-L--P-FFDEAFD 150 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-----------------~~~~~~~d~~~-~--~-~~~~~fD 150 (229)
....+.+|||+|||+|..++.++.. +..+|+.+|.++. .+.+...|..+ . . ....+||
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3467899999999999999999999 6779999998873 11233434333 1 1 2346899
Q ss_pred EEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHH
Q 027039 151 VAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (229)
Q Consensus 151 ~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~ 199 (229)
+|++..+.+.. ....+++-+.+.++|+|.+++..... .....++.+..
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R-~~~~~~F~~~~ 170 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR-RKSEQEFFDRL 170 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S--TGGCHHHHHH
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe-cHHHHHHHHHh
Confidence 99999766655 56888999999999999977666554 23334444443
No 155
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.63 E-value=3.6e-08 Score=79.93 Aligned_cols=100 Identities=11% Similarity=0.073 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-------------EEEcCCCCCCCCCCceeEEEcccch-hh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHNLPFFDEAFDVAFTAHLA-EA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~~fD~V~~~~~~-~~ 160 (229)
+....++|||||-|.....+...+..+++-+|.|..|++ ...+|-+.++|.++++|+|+++--. |.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 456689999999999999999999999999999977433 5678889999999999999998444 44
Q ss_pred hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHH
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIV 196 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~ 196 (229)
.+....+.+++..|||+|.++... .+++...++.
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasm--lggdTLyELR 184 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASM--LGGDTLYELR 184 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHH--hccccHHHHH
Confidence 478889999999999999966433 3344444443
No 156
>PRK01581 speE spermidine synthase; Validated
Probab=98.63 E-value=6.3e-08 Score=84.36 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe----------------------EEEcCCCC-CCCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------------------VSRADPHN-LPFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------------------~~~~d~~~-~~~~~~~fD 150 (229)
..+.+||+||||.|..+..+.+. +..+|+++|+++.+++ ++.+|+.+ +.-.+++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 55679999999999988888877 5679999999988433 33444443 223356899
Q ss_pred EEEcccch------hhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 151 VAFTAHLA------EALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 151 ~V~~~~~~------~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+|++.... ..+.-.++++.+.+.|+|||.+++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99997321 112347899999999999999775543
No 157
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.61 E-value=4.7e-07 Score=78.04 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=78.6
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe---------------EEEc-CCCCCCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRA-DPHNLPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~---------------~~~~-d~~~~~~~~~~fD~ 151 (229)
+......++|..|||-=||||.+.++..-.|. .++|.|++..|+. +... |+..+|+.++++|.
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccce
Confidence 34456678999999999999999999988898 9999999987433 3455 99999999889999
Q ss_pred EEccc-----chhh---h--CHHHHHHHHHhccccCcEEEEEee
Q 027039 152 AFTAH-----LAEA---L--FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 152 V~~~~-----~~~~---~--~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
|++.- .... + -..++++.++++||+||++++..+
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99971 1011 1 147889999999999999998887
No 158
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.60 E-value=1.1e-06 Score=71.08 Aligned_cols=124 Identities=18% Similarity=0.230 Sum_probs=94.3
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCC---CCCceeEEEcccchhhh-CH---HHHHHH
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPF---FDEAFDVAFTAHLAEAL-FP---SRFVGE 169 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~---~~~~fD~V~~~~~~~~~-~~---~~~l~~ 169 (229)
..++|||||=+...... ..+.-+|+.||+++....+.+.|+-+.|. +++.||+|.++-+.... +| .++++.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r 129 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRR 129 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHH
Confidence 47999999987665443 33445899999999999999999999776 46899999998666555 45 679999
Q ss_pred HHhccccCcE-----EEEEeecCC-----cccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 170 MERTVKIGGV-----CMVLMEECA-----GREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 170 ~~~~LkpgG~-----lil~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
+++.|+|+|. ++++.+... --+.+.+.++....+|..++.- ...+..-.+|++
T Consensus 130 ~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~--~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 130 AHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK--KSKKLAYWLFRK 192 (219)
T ss_pred HHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE--ecCeEEEEEEee
Confidence 9999999999 988887632 2245678889999999988863 333344444444
No 159
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.60 E-value=1.2e-07 Score=80.47 Aligned_cols=94 Identities=18% Similarity=0.310 Sum_probs=73.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------------eEEEcCCCC------CCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------------LVSRADPHN------LPFF 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------------~~~~~d~~~------~~~~ 145 (229)
+.+++..++|+|||-|-...-.-..|.+.++|+|+.+..+ .|+.+|-.. +++.
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3488999999999999998888888899999999998732 377777543 3455
Q ss_pred CCceeEEEcccchhhh-----CHHHHHHHHHhccccCcEEEEEeec
Q 027039 146 DEAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.+||+|=|-...|.. ....+++++.+.|||||.++-.++.
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 6669999887544433 2467899999999999998866665
No 160
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.58 E-value=1.7e-07 Score=79.71 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCChhhHHHH----hC-C----CCeEEEecCCCC-------------------------------------
Q 027039 97 HSKVLCVSAGAGHEVMAFN----SI-G----VADVTGVELMDS------------------------------------- 130 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~----~~-g----~~~v~~vD~s~~------------------------------------- 130 (229)
..+|+..||++|..+-.+| +. + .-+|+|+|+++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999997655544 32 1 237999999976
Q ss_pred ---------CCeEEEcCCCCCCCC-CCceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 131 ---------LPLVSRADPHNLPFF-DEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 131 ---------~~~~~~~d~~~~~~~-~~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++.|.+.|+.+.+++ .+.||+|+|.++..+++ ..++++.+++.|+|||.+++-..+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 122566666654433 57899999998887774 378999999999999987655443
No 161
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.57 E-value=3.3e-07 Score=74.10 Aligned_cols=92 Identities=16% Similarity=0.043 Sum_probs=63.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCC-CCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHN-LPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||+|||+|.++..+...+..+|+++|.++. .+.++.+|+.+ ++...++||+|+++--.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457899999999999999766665679999999876 24477777765 22224579999997321
Q ss_pred hhhCHHHHHHHHHh--ccccCcEEEEEeec
Q 027039 159 EALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (229)
Q Consensus 159 ~~~~~~~~l~~~~~--~LkpgG~lil~~~~ 186 (229)
..-...++++.+.. .++|+|.+++....
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 21123445555554 47999987755443
No 162
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.54 E-value=5.3e-07 Score=81.55 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=76.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCC----CCCCCCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHN----LPFFDEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~----~~~~~~~fD~V~ 153 (229)
...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+ +.++.+|+.+ .++.+++||+|+
T Consensus 294 ~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 294 DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 34678899999999999999999886 499999999873 4588888864 234567899999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeec
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVN 213 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~ 213 (229)
++--... ..+.+..+.+ ++|++.+++.... .---+.+..+.+ ..++.+++-++.+
T Consensus 373 ~dPPr~g--~~~~~~~l~~-~~~~~ivyvSCnp--~tlaRDl~~L~~~gY~l~~i~~~DmF 428 (443)
T PRK13168 373 LDPPRAG--AAEVMQALAK-LGPKRIVYVSCNP--ATLARDAGVLVEAGYRLKRAGMLDMF 428 (443)
T ss_pred ECcCCcC--hHHHHHHHHh-cCCCeEEEEEeCh--HHhhccHHHHhhCCcEEEEEEEeccC
Confidence 8621111 2244555555 6898886655432 111223444433 5677777766553
No 163
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.49 E-value=9.2e-07 Score=74.43 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCChhhHHHH----hC-C-----CCeEEEecCCCC-----------------------------------
Q 027039 96 NHSKVLCVSAGAGHEVMAFN----SI-G-----VADVTGVELMDS----------------------------------- 130 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~----~~-g-----~~~v~~vD~s~~----------------------------------- 130 (229)
...+|+..||++|...-.+| +. + .-+|+|+|++..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47799999999996555543 22 2 248999999976
Q ss_pred ---------CCeEEEcCCCCCCCCCCceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 131 ---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 131 ---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++.|.+.|...-++..+.||+|+|.++.-.++ ..+++..++..|+|||.+++-..+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 23366666665443467899999998877774 377999999999999998866655
No 164
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.49 E-value=6.4e-07 Score=72.55 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------eEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
...+.||.|+|-|..+..+...-+.+|-.+|+.+..+ ++....++++..++++||+|++..+..|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4568999999999999877555477899999887622 2555555665445689999999988888
Q ss_pred h---CHHHHHHHHHhccccCcEEEEEeec---CC-----------cccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 161 L---FPSRFVGEMERTVKIGGVCMVLMEE---CA-----------GREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 161 ~---~~~~~l~~~~~~LkpgG~lil~~~~---~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
+ +..+++++....|+|||.+++= +. .+ ..+...+.++|+++++.-++.-...|.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvK-EN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~f 205 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVK-ENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGF 205 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEE-EEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT-
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEE-ecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCC
Confidence 7 4578999999999999986632 11 11 115778999999999998887665543
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.48 E-value=5.5e-07 Score=74.20 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-----------EEEcCCCCCCC-----CCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLPF-----FDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-----------~~~~d~~~~~~-----~~~~fD~V~~~~~~ 158 (229)
.++.++||+|||+|.++..+++.|..+|+|+|+++.++. +...++..... .-..+|+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 467899999999999999999998889999999985322 23334443221 113677666532
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
...+..+.+.|+| |.+++.+.
T Consensus 152 -----~~~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 152 -----ISILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred -----HhHHHHHHHHhCc-CeEEEEcC
Confidence 2246778888999 87776653
No 166
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.48 E-value=7.6e-07 Score=76.99 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCC-CCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPF-FDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~~~~~ 159 (229)
++.+|||+|||+|.++..++..+ .+|+|+|+++. .++++++|+.++.. .+++||+|+++--..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 56899999999999999999987 49999999987 24588899877532 345799999872111
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.. ...+++. ...++|++.++ +++...--.+.+..+ ...++.+++-++-
T Consensus 252 G~-~~~~~~~-l~~~~~~~ivy--vsc~p~t~~rd~~~l-~~y~~~~~~~~Dm 299 (315)
T PRK03522 252 GI-GKELCDY-LSQMAPRFILY--SSCNAQTMAKDLAHL-PGYRIERVQLFDM 299 (315)
T ss_pred Cc-cHHHHHH-HHHcCCCeEEE--EECCcccchhHHhhc-cCcEEEEEEEecc
Confidence 11 1222233 33367776544 333222233344444 6677777766655
No 167
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.45 E-value=1.1e-06 Score=69.79 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC----CCeEEEcCCCCC------C--CC--CCceeEEEccc---
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----LPLVSRADPHNL------P--FF--DEAFDVAFTAH--- 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~----~~~~~~~d~~~~------~--~~--~~~fD~V~~~~--- 156 (229)
++.++||+||++|.++..+.+.+ .+.|+|+|+.+. ...++++|+.+. . +. .+.||+|+|.-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 45899999999999999999996 579999999977 333445554331 1 11 26999999963
Q ss_pred ch------hhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LA------EALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~------~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+. +... -...+.-+.+.|||||.+++-+-.
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 1111 133445566789999987765544
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.43 E-value=3.9e-07 Score=75.01 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC---CCCCCceeEEEcccch
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL---PFFDEAFDVAFTAHLA 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~---~~~~~~fD~V~~~~~~ 158 (229)
..+||||||.|.+...+|+. |...++|+|+... .+.++..|+..+ -+++++.|-|+.+.-.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999998 8789999999876 334667777652 2456699999987322
Q ss_pred -----hhh----CHHHHHHHHHhccccCcEEEEEeec
Q 027039 159 -----EAL----FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 -----~~~----~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.|. ....+++.+.+.|||||.+.+.++.
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 111 2378999999999999999888775
No 169
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.43 E-value=7.1e-07 Score=72.46 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCC-CC-----CCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHN-LP-----FFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~-~~-----~~~~~fD 150 (229)
....+||||||+.|+-+..+++. ..++++.+|+++. .++++.+|+.+ ++ -..++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 47789999999999999999976 3579999999986 35588888765 22 1136899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+||..+-- ......+..+.+.|+|||.+++
T Consensus 124 ~VFiDa~K--~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 124 FVFIDADK--RNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEEESTG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcccc--cchhhHHHHHhhhccCCeEEEE
Confidence 99986421 2456778888899999999653
No 170
>PLN02476 O-methyltransferase
Probab=98.42 E-value=7.7e-07 Score=75.29 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCC-CC-C----CCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHN-LP-F----FDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~-~~-~----~~~~fD 150 (229)
.+..+|||||+++|..+..++.. +.++++++|.+++ .++++.+|+.+ ++ + .+++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 56889999999999999999875 3568999999986 34577888765 22 1 136899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+||...-- ......++.+.+.|+|||.+++
T Consensus 197 ~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 197 FAFVDADK--RMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCcEEEE
Confidence 99985321 2357788888999999999663
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.42 E-value=6.9e-07 Score=75.13 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=51.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||||||+|..+..+++.+. +++++|+++. .+.++++|+.+++++ .||.|++|
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEc
Confidence 456889999999999999999999954 9999999965 355888999888764 48999997
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.42 E-value=5.4e-07 Score=76.35 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=51.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||||||+|.++..+++.+. +|+|+|+++.+ ++++++|+.++++++-.+|.|++|
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 457888999999999999999999965 99999999872 458899999887654335888887
No 173
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=8.3e-07 Score=71.15 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-C--CCeEEEecCCCC-------------------------C
Q 027039 80 SYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G--VADVTGVELMDS-------------------------L 131 (229)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g--~~~v~~vD~s~~-------------------------~ 131 (229)
.++..+..|.+ .++||.+.||+|+|+|+++..++.. + .....|+|.-++ .
T Consensus 68 mha~~le~L~~--~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 68 MHATALEYLDD--HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHH--hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 34455544421 2489999999999999999888855 2 224588887665 2
Q ss_pred CeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 132 PLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 132 ~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.++.+|....--+..+||.|++..- ..+.-+++...|+|||++++.+.+
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAa-----a~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAA-----ASELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccC-----ccccHHHHHHhhccCCeEEEeecc
Confidence 33788898887667889999998621 234557788889999999888775
No 174
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=5.7e-06 Score=65.27 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=79.1
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----CCeEEEc-CCCCC--------CCCCCceeEEEcc
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRA-DPHNL--------PFFDEAFDVAFTA 155 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----~~~~~~~-d~~~~--------~~~~~~fD~V~~~ 155 (229)
.+.++|+.+|||+||.+|.+++...++ +.+-|.|+|+..- ...++.+ |+.+. .+++...|+|++.
T Consensus 64 y~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 64 YRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred ccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 356799999999999999999988887 7889999998754 2335555 66553 2467899999996
Q ss_pred c--------chhhh---CH-HHHHHHHHhccccCcEEEEEeecCCcc--cHHHHHHHHhcCceeEee
Q 027039 156 H--------LAEAL---FP-SRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 156 ~--------~~~~~---~~-~~~l~~~~~~LkpgG~lil~~~~~~~~--~~~~l~~l~~~~~~~~~~ 208 (229)
- ...|. +. .+++.-....++|+|.+++=+-..++. -.+.+.+.|.+.+.++..
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~ 210 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPD 210 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCc
Confidence 1 11222 11 344555667789999988655543322 234455666665555544
No 175
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.37 E-value=5.5e-06 Score=71.61 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-----------------CeEE-EcCCCCCC----CCCCceeEE
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-----------------PLVS-RADPHNLP----FFDEAFDVA 152 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-----------------~~~~-~~d~~~~~----~~~~~fD~V 152 (229)
.+.++||||||+|.....++.. ...+++|+|+++.. +.+. +.|..++. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 5689999999999887777665 44599999999762 1222 22322221 235789999
Q ss_pred Ecc--cchhhhC----H------------------------------------HHHHHHHHhccccCcEEEEEeecCCcc
Q 027039 153 FTA--HLAEALF----P------------------------------------SRFVGEMERTVKIGGVCMVLMEECAGR 190 (229)
Q Consensus 153 ~~~--~~~~~~~----~------------------------------------~~~l~~~~~~LkpgG~lil~~~~~~~~ 190 (229)
+|| +...... . ..++.+.....+..|.+..+++. ..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~k--k~ 271 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSK--KE 271 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeec--cC
Confidence 999 1111000 0 11223333333344443333443 44
Q ss_pred cHHHHHHHHhcCceeEeeeee-ecCCeeEEEEE
Q 027039 191 EIKQIVELFRTSRFVDAANVT-VNGSNMTRILM 222 (229)
Q Consensus 191 ~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 222 (229)
+..++.+.+++.+...+..++ ..|.+.+.++.
T Consensus 272 ~l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~va 304 (321)
T PRK11727 272 NLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIA 304 (321)
T ss_pred CHHHHHHHHHHcCCceEEEEEEeCCCeeeEEEE
Confidence 788888888888887666664 46776666653
No 176
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.36 E-value=1.8e-06 Score=68.63 Aligned_cols=111 Identities=16% Similarity=0.215 Sum_probs=71.3
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC--CCC--------eEEEecCCCC----------------CCeEEEcCCCCCC
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVA--------DVTGVELMDS----------------LPLVSRADPHNLP 143 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~--------~v~~vD~s~~----------------~~~~~~~d~~~~~ 143 (229)
.....+++..+||--||+|.+.++.+.. ... +++|.|+++. .+.+.+.|+.+++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 3345678999999999999999887765 232 2889999987 3458889999999
Q ss_pred CCCCceeEEEcc--c---chh--hh--CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 144 FFDEAFDVAFTA--H---LAE--AL--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 144 ~~~~~fD~V~~~--~---~~~--~~--~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
+.++++|.|+++ + +.. .. ...++++++.+++++ ..+++.... . .+.+.++...+.+.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~---~---~~~~~~~~~~~~~~ 167 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN---R---ELEKALGLKGWRKR 167 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC---C---CHHHHHTSTTSEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC---H---HHHHHhcchhhceE
Confidence 878999999998 1 111 11 235678999999999 444433332 1 24455554444333
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.36 E-value=1.6e-06 Score=78.18 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCeEEEEcCCCChhhHHHHhCC-----CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIG-----VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g-----~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
+..|+|||||+|.++...++.+ ..+|+|+|.++. .+.++++|++++..+ .++|+|||=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987665443 469999999875 456999999998764 499999995
Q ss_pred cchhhh---CHHHHHHHHHhccccCcEEE
Q 027039 156 HLAEAL---FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 156 ~~~~~~---~~~~~l~~~~~~LkpgG~li 181 (229)
-+.... -..+.+....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 222111 23467888899999999754
No 178
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.36 E-value=1.2e-06 Score=74.94 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
-.+..|||+|||+|.++...+..|..+|++++.|+- .+.++.|.++++.++ ++.|+|++--+..
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 357789999999999999999999999999998864 455888999998764 6899999975555
Q ss_pred hhCHHHHH---HHHHhccccCcEEEEEe
Q 027039 160 ALFPSRFV---GEMERTVKIGGVCMVLM 184 (229)
Q Consensus 160 ~~~~~~~l---~~~~~~LkpgG~lil~~ 184 (229)
.+.-++++ -.+.+.|||+|.++=.+
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 44333333 34568999999976433
No 179
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=7e-06 Score=64.48 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc--cc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA--HL 157 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~--~~ 157 (229)
...-++|||||+|..+..|++. |...+.++|+++. .++.++.|..+- ...++.|+++-| ++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 3678999999999999999887 5668999999987 345777777652 224889998887 11
Q ss_pred h--------------hh--hC----HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 158 A--------------EA--LF----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 158 ~--------------~~--~~----~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
. +. .+ ..+++.++-..|.|.|.+++++-. .+..+++....+.-++....-.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--ANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--hcCHHHHHHHHhhcccceeEEE
Confidence 1 11 11 245667777889999999988776 5667788887776655544443
No 180
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.35 E-value=1.8e-06 Score=70.45 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC----------------CeEEE-cCCCCC-C-CCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSR-ADPHNL-P-FFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~----------------~~~~~-~d~~~~-~-~~~~~fD~V~ 153 (229)
....+|||||++.|+-+..++.. + .++++++|++++. +..+. +|..+. . ...++||+||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 68899999999999999999987 5 7799999999882 33555 465442 1 4568999999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
..+- -.+..++++.+.+.|+|||.+++
T Consensus 138 IDad--K~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 138 IDAD--KADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EeCC--hhhCHHHHHHHHHHhCCCcEEEE
Confidence 8421 11357789999999999999664
No 181
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.35 E-value=1.9e-06 Score=77.65 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=61.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCC----CCCCCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNL----PFFDEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~----~~~~~~fD~V~ 153 (229)
..+++.+|||+|||+|.++..++... .+|+|+|+++.+ +.++.+|+.+. ++.+++||+|+
T Consensus 289 ~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 289 ELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred ccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 34677899999999999999999875 499999999872 45888888652 23456799999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
.+--... -..++++.+.+ ++|++.+++
T Consensus 368 ~dPPr~G-~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 368 LDPPRKG-CAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred ECcCCCC-CCHHHHHHHHh-cCCCEEEEE
Confidence 7521111 12445555544 789886554
No 182
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.34 E-value=2.3e-05 Score=67.81 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=83.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhhCHH
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~ 164 (229)
.+.++.++||+||++|.++..+.++|. .|+|+|..+- .+...++|......+.+.+|.++|.-+.. |.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P~ 283 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---PA 283 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---HH
Confidence 457899999999999999999999987 9999997754 23455555544322267899999965555 88
Q ss_pred HHHHHHHhccccC--cEEEEEeecCCcccHHH-------HHHHHhcCce---eEeeeeeecCCeeEEEE
Q 027039 165 RFVGEMERTVKIG--GVCMVLMEECAGREIKQ-------IVELFRTSRF---VDAANVTVNGSNMTRIL 221 (229)
Q Consensus 165 ~~l~~~~~~Lkpg--G~lil~~~~~~~~~~~~-------l~~l~~~~~~---~~~~~~~~~~~~~~~~~ 221 (229)
+..+-+.+.+..| ...++...-......++ +.+.+.+.+. +.++.+-.+-...++++
T Consensus 284 rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khLyHdReEiTv~~ 352 (357)
T PRK11760 284 RVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQLYHDREEVTVHL 352 (357)
T ss_pred HHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeeeecCCceEEEEE
Confidence 8888888888776 35555555433332222 2233333332 35555555555555555
No 183
>PRK04148 hypothetical protein; Provisional
Probab=98.34 E-value=1.6e-06 Score=65.34 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCCCCh-hhHHHHhCCCCeEEEecCCCCC--------CeEEEcCCCCCCCC-CCceeEEEcccchhhhCHH
Q 027039 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDSL--------PLVSRADPHNLPFF-DEAFDVAFTAHLAEALFPS 164 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~-~~~~l~~~g~~~v~~vD~s~~~--------~~~~~~d~~~~~~~-~~~fD~V~~~~~~~~~~~~ 164 (229)
..+.++||||||+|. .+..|++.|+ +|+++|+++.. ..++.+|..+..+. -..+|+|.+..- |.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~ 88 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PR 88 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CH
Confidence 356899999999996 8889998887 99999999984 45889999886543 468999998432 34
Q ss_pred HHHHHHHhcccc-CcEEEEEeecCC
Q 027039 165 RFVGEMERTVKI-GGVCMVLMEECA 188 (229)
Q Consensus 165 ~~l~~~~~~Lkp-gG~lil~~~~~~ 188 (229)
++..-+.++-|. |.-++ +.+-.+
T Consensus 89 el~~~~~~la~~~~~~~~-i~~l~~ 112 (134)
T PRK04148 89 DLQPFILELAKKINVPLI-IKPLSG 112 (134)
T ss_pred HHHHHHHHHHHHcCCCEE-EEcCCC
Confidence 444445554444 33333 444433
No 184
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.32 E-value=6.2e-06 Score=67.04 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=87.5
Q ss_pred hHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC-------------CCeEEEc
Q 027039 73 SWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS-------------LPLVSRA 137 (229)
Q Consensus 73 ~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~-------------~~~~~~~ 137 (229)
.|.....-+...+-.=+..-.+++|++||.+|+.+|.....++.. | .+.|+|++.++. .+--+..
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~ 129 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE 129 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec
Confidence 365444433333222223346789999999999999999999988 4 789999999985 3335677
Q ss_pred CCCCCC---CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCc----c---cHHHHHHHHhcCceeEe
Q 027039 138 DPHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAG----R---EIKQIVELFRTSRFVDA 207 (229)
Q Consensus 138 d~~~~~---~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~----~---~~~~l~~l~~~~~~~~~ 207 (229)
|+.... ..-+.+|+|++. +...-...-++.++...||+||.+++.+..... . .+.+-.+.++..+|.-.
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~D-VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQD-VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE--SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred cCCChHHhhcccccccEEEec-CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 877521 123589999984 333222355678888999999999988865221 1 23333344555555555
Q ss_pred eeeee--cCCeeEEEEEEe
Q 027039 208 ANVTV--NGSNMTRILMRR 224 (229)
Q Consensus 208 ~~~~~--~~~~~~~~~~~~ 224 (229)
+.+++ +..+--.++.+.
T Consensus 209 e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 209 EQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp EEEE-TTTSTTEEEEEEEE
T ss_pred eEeccCCCCCCcEEEEEEe
Confidence 55544 444434444443
No 185
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.30 E-value=7.4e-07 Score=78.16 Aligned_cols=89 Identities=26% Similarity=0.235 Sum_probs=77.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...++++++|+|||.|.....++......++|+|.++. .-.++.+|.-+-||+++.||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34788899999999999999999886559999999876 12267788888999999999999997
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEE
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~li 181 (229)
...|. ++..+++|+.+++||||.++
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEE
Confidence 77777 99999999999999999976
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.29 E-value=5.1e-06 Score=69.59 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------CeEEEcCCCCCCCCCCcee---EEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFD---VAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD---~V~~~ 155 (229)
...++.+|||||||+|.++..+++.+. .++++|+++.+ +.++++|+.+.+++ .+| .|++|
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 456789999999999999999999964 79999998772 45788899888764 566 77775
No 187
>PLN02823 spermine synthase
Probab=98.28 E-value=2.2e-06 Score=74.63 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC-------------------eEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~-------------------~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
....+||.||+|.|..+..+.+. +..+++.+|+++..+ +++.+|+.+ +...+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999988876 567899999998722 255555554 233357899999
Q ss_pred cccch-------hhhCHHHHHH-HHHhccccCcEEEEEee
Q 027039 154 TAHLA-------EALFPSRFVG-EMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~-------~~~~~~~~l~-~~~~~LkpgG~lil~~~ 185 (229)
+.... .++.-.++++ .+.+.|+|||.+++...
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 86322 2234567888 89999999999776543
No 188
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.28 E-value=6.1e-06 Score=74.88 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCC-CCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLP-FFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~ 154 (229)
..+++.+|||++||+|.-+..+++. +.+.+++.|+++. .+.+...|...++ ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 3478999999999999999999887 4569999999987 2335666776543 23467999995
Q ss_pred c----c--ch-------hhh----------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 155 A----H--LA-------EAL----------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~----~--~~-------~~~----------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. . +. +.. -..+++..+.+.|||||+++-.+-.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 4 1 10 000 1156889999999999997544433
No 189
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.28 E-value=1.5e-06 Score=79.75 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC--CCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL--PFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~ 156 (229)
..+..+||||||.|.+...+|.. +...++|+|+... .+.++..|+..+ -++++++|-|+.++
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 45678999999999999999998 7779999999876 223555565432 26788999999973
Q ss_pred chhh-----h----CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 157 LAEA-----L----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 157 ~~~~-----~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
-.-+ . .-.++++.+++.|||||.+.+.++. ..-.....+.+....
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~--~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI--ENYFYEAIELIQQNG 479 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC--HHHHHHHHHHHHhCC
Confidence 2211 1 2378999999999999998877775 222233345555443
No 190
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.4e-06 Score=68.95 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
-.+..|+|+|||+|.++...+-.|...|+|+|++++ .++|..+|+.+. .+.+|.+++|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 467889999999999999999998779999999987 355888888886 4688999998
No 191
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.26 E-value=6.1e-06 Score=63.99 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=75.1
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC----------CCeEEEcCCCCCC-----CCCCce
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----------LPLVSRADPHNLP-----FFDEAF 149 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~----------~~~~~~~d~~~~~-----~~~~~f 149 (229)
.+...-....+..|||+|.|+|.++.++.+.| ..+++++|.++. ...++.+|+.++. +.+..|
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCee
Confidence 33334445678899999999999999999884 358999999987 4558889887764 557789
Q ss_pred eEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 150 DVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 150 D~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|.|+|.--...+ .-.++++++...|.+||.++-.+..
T Consensus 119 D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 999996211111 2367889999999999998855544
No 192
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.21 E-value=6.1e-06 Score=73.05 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=71.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCC-CCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPF-FDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~-~~~~fD~V~~~~~~~ 159 (229)
++.+|||++||+|.++..++..+ .+|+|+|+++.+ ++++.+|+.+... ..++||+|+++--..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 56799999999999999999876 499999999872 4488888765321 124699999872111
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.. ..++++.+. .++|++.+++.... .---+.+..+ ...++.++.-++-
T Consensus 312 G~-~~~~l~~l~-~~~p~~ivyvsc~p--~TlaRDl~~L-~gy~l~~~~~~Dm 359 (374)
T TIGR02085 312 GI-GKELCDYLS-QMAPKFILYSSCNA--QTMAKDIAEL-SGYQIERVQLFDM 359 (374)
T ss_pred CC-cHHHHHHHH-hcCCCeEEEEEeCH--HHHHHHHHHh-cCceEEEEEEecc
Confidence 11 234445554 47898875544332 2223335555 5566666655544
No 193
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.16 E-value=1.6e-05 Score=63.84 Aligned_cols=90 Identities=14% Similarity=-0.081 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCC-C-C-CC-CceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNL-P-F-FD-EAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~-~~-~~fD~V~~~ 155 (229)
.+.++||++||+|.++.+++.+|...|+++|.++. .++++.+|+.+. . + .. ..||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 67899999999999999999998779999999976 134777787442 1 1 12 247888886
Q ss_pred cchhhhCHHHHHHHHH--hccccCcEEEEEee
Q 027039 156 HLAEALFPSRFVGEME--RTVKIGGVCMVLME 185 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~--~~LkpgG~lil~~~ 185 (229)
--.......+++..+. .+|+++|.+++-..
T Consensus 129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2111112344444443 46888998664443
No 194
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=6.5e-06 Score=68.52 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=90.7
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCCCC--CCceeE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFF--DEAFDV 151 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~--~~~fD~ 151 (229)
..++||++|+|-|+|+|..+.+++.. +.+++...|.-.. .+.+.+-|+....|. +..+|.
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccce
Confidence 36799999999999999999999887 6789999998654 455888888876654 578999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecC
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
|+. .+ ..|..++--+...||.+|.-++.++.+- +..+.-++....++|.++.-++...
T Consensus 181 VFL-Dl---PaPw~AiPha~~~lk~~g~r~csFSPCI-EQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 181 VFL-DL---PAPWEAIPHAAKILKDEGGRLCSFSPCI-EQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred EEE-cC---CChhhhhhhhHHHhhhcCceEEeccHHH-HHHHHHHHHHHhCCCceEEEEEeeh
Confidence 987 22 2488888888889999874444555444 3455777888899999988766544
No 195
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=4.9e-06 Score=69.71 Aligned_cols=89 Identities=28% Similarity=0.335 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CC-eEEEcCCCCCCCCCCceeEEEcccchhhhC---
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LP-LVSRADPHNLPFFDEAFDVAFTAHLAEALF--- 162 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~-~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~--- 162 (229)
..++.++|+|||.|-... ..+..-++|.|++.. .. ....+|+..+|+.+.+||.+++..+.||+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 668999999999997542 223346888888765 23 477889999999999999999999888883
Q ss_pred -HHHHHHHHHhccccCcEEEEEeec
Q 027039 163 -PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 163 -~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
-.++++++.|.+||||...+.+-.
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeh
Confidence 367999999999999987666543
No 196
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.14 E-value=2.4e-05 Score=70.42 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=86.3
Q ss_pred hhHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCC
Q 027039 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHN 141 (229)
Q Consensus 72 ~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~ 141 (229)
..|+..+..|..++...+ ....-..|+|+.+|.|.++.+|.+.+..-+..+=.... .+-..+.--+.
T Consensus 344 ~~Wk~~V~~Y~~l~~~~i---~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~ 420 (506)
T PF03141_consen 344 KHWKKRVSHYKKLLGLAI---KWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEA 420 (506)
T ss_pred HHHHHHHHHHHHhhcccc---cccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhc
Confidence 457777776665554111 11233579999999999999999887533333222111 11122222233
Q ss_pred CCCCCCceeEEEcccchhhh----CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 142 LPFFDEAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 142 ~~~~~~~fD~V~~~~~~~~~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
.+.-+.+||+|+++++.... ....++-||-|+|+|||.+++ -+. .+-..++..+.+.-+......-+.+|+.
T Consensus 421 fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii-RD~--~~vl~~v~~i~~~lrW~~~~~d~e~g~~ 496 (506)
T PF03141_consen 421 FSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII-RDT--VDVLEKVKKIAKSLRWEVRIHDTEDGPD 496 (506)
T ss_pred cCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE-ecc--HHHHHHHHHHHHhCcceEEEEecCCCCC
Confidence 55557999999999766544 458899999999999999662 232 4456677777775555444333344443
No 197
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.14 E-value=4e-06 Score=71.76 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=52.0
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
+.....+.++.+|||||||+|.++..+++.+. +++++|+++. .++++++|+.+.++ ..||.
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~ 104 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDV 104 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCE
Confidence 33334557889999999999999999998854 8999999965 24588888877654 46899
Q ss_pred EEcc
Q 027039 152 AFTA 155 (229)
Q Consensus 152 V~~~ 155 (229)
|++|
T Consensus 105 VvaN 108 (294)
T PTZ00338 105 CVAN 108 (294)
T ss_pred EEec
Confidence 9987
No 198
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.14 E-value=1.6e-05 Score=71.22 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=74.7
Q ss_pred CCCC-eEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHS-KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~-~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
++.. ++|-+|||.-.+...+.+.|+.+|+.+|+|+.. ..+...|...+.|++++||+|+.-...+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 5556 999999999999999999999999999999862 3388899999999999999999864333
Q ss_pred hh-----------CHHHHHHHHHhccccCcEEEEEee
Q 027039 160 AL-----------FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 160 ~~-----------~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++ .....+.+++++++|||+.+.++-
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 33 124567899999999999876655
No 199
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.13 E-value=7.4e-06 Score=68.36 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC-C-C-----CCCce
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL-P-F-----FDEAF 149 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~f 149 (229)
.+..+|||||++.|.-+..++.. +.++++++|.++. .++++.+++.+. + + ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 46779999999999999999875 4569999999986 355788877652 2 1 13689
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
|+|+..+- .......+..+.+.|+|||.+++
T Consensus 158 D~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 158 DFIFVDAD--KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cEEEecCC--HHHhHHHHHHHHHhcCCCeEEEE
Confidence 99998532 11345677778899999999653
No 200
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.12 E-value=2.4e-06 Score=69.32 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=54.5
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC------------------------CCeEEEcCCCCCCCCC
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------------------LPLVSRADPHNLPFFD 146 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~------------------------~~~~~~~d~~~~~~~~ 146 (229)
..++++...+|+|||.|......+.. ++.+.+|+|+.+. .+++.++|+.+.++.+
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 35688999999999999998887766 8878999999976 2236677776643211
Q ss_pred ---CceeEEEcccchhhhCHHHHHHHHHhccccCcEEE
Q 027039 147 ---EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 147 ---~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~li 181 (229)
...|+|++|++.-..+....+.+....||+|-+++
T Consensus 118 ~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 118 DIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred hhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 35799999876442233445677778889998865
No 201
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=3.4e-05 Score=66.96 Aligned_cols=120 Identities=14% Similarity=0.054 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.+|..|+|+=||-|.+++.++..|...|+++|++|. .+..+++|....+..-+.+|-|+++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 779999999999999999999998766999999987 2458899999987655899999998655
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcc----cHHHHHHHHhc----CceeEeeeeeecCCee
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGR----EIKQIVELFRT----SRFVDAANVTVNGSNM 217 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~----~~~~l~~l~~~----~~~~~~~~~~~~~~~~ 217 (229)
. ..+++..+.+.+|+||.+-...-..... ..+.+.+..++ ......+.++.+...+
T Consensus 267 ~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v 330 (341)
T COG2520 267 S---AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGV 330 (341)
T ss_pred c---chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCe
Confidence 4 4567777888888999866444333222 23445555443 3355556666655543
No 202
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.06 E-value=1.5e-05 Score=66.72 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC------------------------------------------
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------------------------------------ 132 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~------------------------------------------ 132 (229)
.+.++||||||+-... .+... -+.+++..|..+...
T Consensus 56 ~g~~llDiGsGPtiy~-~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ-LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GG-GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh-hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 5778999999996553 33332 466899999987611
Q ss_pred --eEEEcCCCCCC-CCC-----CceeEEEcccchhhh--CH---HHHHHHHHhccccCcEEEEEeecCC-----------
Q 027039 133 --LVSRADPHNLP-FFD-----EAFDVAFTAHLAEAL--FP---SRFVGEMERTVKIGGVCMVLMEECA----------- 188 (229)
Q Consensus 133 --~~~~~d~~~~~-~~~-----~~fD~V~~~~~~~~~--~~---~~~l~~~~~~LkpgG~lil~~~~~~----------- 188 (229)
.++.+|+++.+ +.. .+||+|++....+.. +. ..+++++.++|||||.+++......
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 17788998743 332 359999998766655 43 6788999999999999997743321
Q ss_pred --cccHHHHHHHHhcCcee
Q 027039 189 --GREIKQIVELFRTSRFV 205 (229)
Q Consensus 189 --~~~~~~l~~l~~~~~~~ 205 (229)
..+.+.+.+.+.+.++.
T Consensus 215 ~l~l~ee~v~~al~~aG~~ 233 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFD 233 (256)
T ss_dssp ---B-HHHHHHHHHHTTEE
T ss_pred cccCCHHHHHHHHHHcCCE
Confidence 12456677788888873
No 203
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.04 E-value=3.4e-06 Score=68.17 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+++.+|+|+-||-|.++..++.. ....|+++|++|. .+..+++|..+... ++.||.|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 488999999999999999999983 3458999999987 34578999988754 78999999975
Q ss_pred chhhhCHHHHHHHHHhccccCcEE
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVC 180 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~l 180 (229)
... -.+++..+.+.+|+||.+
T Consensus 178 p~~---~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 PES---SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TSS---GGGGHHHHHHHEEEEEEE
T ss_pred hHH---HHHHHHHHHHHhcCCcEE
Confidence 433 235677788999999874
No 204
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.03 E-value=7.4e-06 Score=72.63 Aligned_cols=85 Identities=25% Similarity=0.282 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
+.+|||++||+|..++.++.. +..+|+++|+++.. ..+..+|+..+....++||+|+.+-..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~G-- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFG-- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCC--
Confidence 568999999999999999876 65689999999872 236777776532114679999986432
Q ss_pred hCHHHHHHHHHhccccCcEEEEEe
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+..++..+.+.+++||.+++..
T Consensus 136 -s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 136 -SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -CcHHHHHHHHHHhcCCCEEEEEe
Confidence 36778888788899999988663
No 205
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.02 E-value=5.2e-05 Score=63.36 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------CeEEEcCCCCC-CCCCC-ceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHNL-PFFDE-AFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------~~~~~~d~~~~-~~~~~-~fD~V 152 (229)
..+.+||-||.|.|..+..+.+. +..+++.+|+++.. ++++.+|+... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46899999999999999999988 46799999999872 24677776542 11234 89999
Q ss_pred Ecccch-----hhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+..... ..+.-.++++.+.+.|+|||.+++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 986332 1234578999999999999998877643
No 206
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.4e-05 Score=66.83 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCC-cee
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDE-AFD 150 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~-~fD 150 (229)
+..+.+.....++..|||||+|.|.++..|++.+. .|+++|+++. .++++++|+-..++++. .++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 44555555667899999999999999999999976 8999999976 35589999999887654 789
Q ss_pred EEEcc
Q 027039 151 VAFTA 155 (229)
Q Consensus 151 ~V~~~ 155 (229)
.|++|
T Consensus 98 ~vVaN 102 (259)
T COG0030 98 KVVAN 102 (259)
T ss_pred EEEEc
Confidence 99997
No 207
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.01 E-value=2.2e-05 Score=65.43 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=59.7
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~ 145 (229)
..++..+.+...++++..|||||.|+|..+..+.+.|. +|+|+|+++- .++++++|+-..++
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 45556667778889999999999999999999999986 9999999987 34588899887654
Q ss_pred CCceeEEEcc
Q 027039 146 DEAFDVAFTA 155 (229)
Q Consensus 146 ~~~fD~V~~~ 155 (229)
-.||.+++|
T Consensus 122 -P~fd~cVsN 130 (315)
T KOG0820|consen 122 -PRFDGCVSN 130 (315)
T ss_pred -cccceeecc
Confidence 369999997
No 208
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.00 E-value=3.9e-05 Score=65.19 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=65.6
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC-------------------eEEEcCCCCC-CCCCCceeEEEccc
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHNL-PFFDEAFDVAFTAH 156 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~-------------------~~~~~d~~~~-~~~~~~fD~V~~~~ 156 (229)
.+||-||.|.|..+.++.+. +..+++.+|++++.+ +++.+|..+. .-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999998 677999999998832 2444554442 21234899999974
Q ss_pred chh-----hhCHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAE-----ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~-----~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
... .++-.++++.+.+.|+++|.++..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 433 123488999999999999997755
No 209
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.98 E-value=1.5e-05 Score=70.52 Aligned_cols=92 Identities=17% Similarity=0.051 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCC-C---CCCCceeEEEc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNL-P---FFDEAFDVAFT 154 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~-~---~~~~~fD~V~~ 154 (229)
.|.+|||+=|=||.++.+.+..|..+||+||.|.. ...++++|+.++ . -...+||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 49999999999999999999999889999999976 234888887663 1 12359999999
Q ss_pred c---------cchhhh-CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 155 A---------HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~---------~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
. ...... +...++..+.++|+|||.+++++...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 6 122222 45778899999999999988666553
No 210
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.93 E-value=7.1e-05 Score=55.38 Aligned_cols=88 Identities=28% Similarity=0.363 Sum_probs=63.4
Q ss_pred EEEEcCCCChhhHHHHhC-CC-CeEEEecCCCC--------C-------CeEEEcCCCC--CCCCC-CceeEEEcccchh
Q 027039 100 VLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDS--------L-------PLVSRADPHN--LPFFD-EAFDVAFTAHLAE 159 (229)
Q Consensus 100 vLDiG~G~G~~~~~l~~~-g~-~~v~~vD~s~~--------~-------~~~~~~d~~~--~~~~~-~~fD~V~~~~~~~ 159 (229)
++|+|||+|... .+... +. ..++++|+++. . +.+..+|... .++.+ ..||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 33333 21 38889999865 1 3567777766 77776 4899993333333
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
+..+...+.++.+.++|+|.+++......
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33578899999999999999887766533
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.87 E-value=0.00015 Score=62.49 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=75.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHh--------CCCCeEEEecCCCCC-----------------CeEEEcCCCCCCCC--
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNS--------IGVADVTGVELMDSL-----------------PLVSRADPHNLPFF-- 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~--------~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~~-- 145 (229)
...++.+|+|-+||+|.+..+..+ ....+++|+|+++.. ..+..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 446777899999999999888765 234599999998772 22666776554432
Q ss_pred CCceeEEEcc--c-ch----hhh--C-------------HHHHHHHHHhccccCcEEEEEeecC---CcccHHHHH-HHH
Q 027039 146 DEAFDVAFTA--H-LA----EAL--F-------------PSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIV-ELF 199 (229)
Q Consensus 146 ~~~fD~V~~~--~-~~----~~~--~-------------~~~~l~~~~~~LkpgG~lil~~~~~---~~~~~~~l~-~l~ 199 (229)
...||+|++| + .. ... + ...++..+.+.||+||++.++++.. .......+. .+.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHH
Confidence 4799999998 1 11 000 0 1358899999999999999888873 122234554 456
Q ss_pred hcCceeEeeeee
Q 027039 200 RTSRFVDAANVT 211 (229)
Q Consensus 200 ~~~~~~~~~~~~ 211 (229)
++..+..+..+.
T Consensus 203 ~~~~i~aVI~Lp 214 (311)
T PF02384_consen 203 ENGYIEAVISLP 214 (311)
T ss_dssp HHEEEEEEEE--
T ss_pred hhchhhEEeecc
Confidence 677777776653
No 212
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.85 E-value=1.5e-05 Score=63.61 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCC-CC---CCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHN-LP---FFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~-~~---~~~~~fD~V~~ 154 (229)
-++.++||+-||+|..+.+...+|..+|+.+|.++.. ..++..|... ++ -...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3789999999999999999999999999999999771 3366667443 21 14689999999
Q ss_pred ccchhhhC-HHHHHHHHH--hccccCcEEEEEeecC
Q 027039 155 AHLAEALF-PSRFVGEME--RTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~~~~~~~~-~~~~l~~~~--~~LkpgG~lil~~~~~ 187 (229)
.--..... ..+++..+. ..|+++|.+++-.+..
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 62111111 366777776 7899999988776653
No 213
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=0.00012 Score=58.40 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=73.0
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
.+....-.+.+|||+|+|+|..+++-+..|...|++.|+.+. .+.+...|.-. .+..||+++.
T Consensus 72 ~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~La 148 (218)
T COG3897 72 DDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLA 148 (218)
T ss_pred hcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEe
Confidence 333445678999999999999999988888889999998865 22244444433 5689999999
Q ss_pred ccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHH
Q 027039 155 AHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQ 194 (229)
Q Consensus 155 ~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~ 194 (229)
..+.... .-.+++. +.+.++..|..+++.+.+..+-.+.
T Consensus 149 gDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk~ 188 (218)
T COG3897 149 GDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYLPKK 188 (218)
T ss_pred eceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCCchh
Confidence 8654433 4556666 7888888888777666665554333
No 214
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.82 E-value=8.3e-05 Score=60.09 Aligned_cols=94 Identities=18% Similarity=0.100 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCC-C-CCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHN-L-PFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~-~-~~~~~~fD~V~~~~~~ 158 (229)
.+|.+||+||-|-|...-.+.+.+...=+.++..+. .+-...+..++ + .++|+.||-|+-..+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 789999999999999998888883336666777776 22244555554 2 2568899999987665
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
++- +...+.+.+.++|||+|.+-.+-..+.
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 555 778888999999999999775555443
No 215
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=1.5e-05 Score=60.47 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.|.+++|+|||.|.+..+.+.-+...|.|+|+.++ .+++.++|..++-+..+.||.++.|
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 68999999999999998877777779999999987 3458899998887778999999998
No 216
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.81 E-value=5.7e-05 Score=64.29 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCC-CC--CCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHN-LP--FFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~-~~--~~~~~fD~V~~ 154 (229)
..+.+|||+=|=+|.++.+.+..|..+|+.+|.|.. ...++.+|+.+ +. -..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 578999999999999999988888889999999976 23477777755 21 12469999999
Q ss_pred c--cchh----hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh
Q 027039 155 A--HLAE----AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (229)
Q Consensus 155 ~--~~~~----~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~ 200 (229)
. .+.. .. +..+++..+.++|+|||.++++.. ...-+.+.+.+...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc-s~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC-SHHISPDFLLEAVA 253 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE---TTS-HHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC-CcccCHHHHHHHHH
Confidence 7 1111 11 456788999999999999875444 34444455555433
No 217
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00049 Score=55.15 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=69.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC-------------eEEEcCCCCCC---CCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------LVSRADPHNLP---FFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~-------------~~~~~d~~~~~---~~~~~fD~V~~ 154 (229)
-.++++++||-+|+.+|.....++.. |.+.++|++.++.+. --+.+|+.... +--+..|+|+.
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 35689999999999999999999998 878999999998832 24456665421 22356899887
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEeecC
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
. +..-....-+..++...||+||.+++.+...
T Consensus 152 D-VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKAr 183 (231)
T COG1889 152 D-VAQPNQAEILADNAEFFLKKGGYVVIAIKAR 183 (231)
T ss_pred e-cCCchHHHHHHHHHHHhcccCCeEEEEEEee
Confidence 3 3321123446788899999999888887664
No 218
>PRK00536 speE spermidine synthase; Provisional
Probab=97.79 E-value=0.00012 Score=61.63 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-------------------EEEcCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------VSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-------------------~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
++..+||=||.|.|..+.++.+.+. +|+-+|++++.++ ++. ...+ -..++||+|+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEEEEc
Confidence 6679999999999999999999875 9999999987432 111 1111 123689999985
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.. ++.++.+.+.+.|+|||.++...
T Consensus 147 s~----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CChHHHHHHHHhcCCCcEEEECC
Confidence 32 46788899999999999977543
No 219
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.76 E-value=0.00045 Score=58.41 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C--CCeEEEecCCCCC----------------CeEEEcCCCCC---CCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G--VADVTGVELMDSL----------------PLVSRADPHNL---PFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g--~~~v~~vD~s~~~----------------~~~~~~d~~~~---~~~~~~fD~V 152 (229)
...-+||||.||+|.......+. + ..+|.-.|.++.. +.|.++|+.+. .--+-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46779999999999988776655 3 3589999999873 25889988763 1123467999
Q ss_pred Ecccchhhh-C---HHHHHHHHHhccccCcEEEEEeecCCcc-----------------------cHHHHHHHHhcCcee
Q 027039 153 FTAHLAEAL-F---PSRFVGEMERTVKIGGVCMVLMEECAGR-----------------------EIKQIVELFRTSRFV 205 (229)
Q Consensus 153 ~~~~~~~~~-~---~~~~l~~~~~~LkpgG~lil~~~~~~~~-----------------------~~~~l~~l~~~~~~~ 205 (229)
+.+.+.+.+ + ....+..+.+.+.|||.++ .+...-.. +..++-+++...+|.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI-yTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLI-YTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE-EcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCc
Confidence 988777766 3 2457889999999999987 43321111 445666666777777
Q ss_pred Eeee
Q 027039 206 DAAN 209 (229)
Q Consensus 206 ~~~~ 209 (229)
++..
T Consensus 293 K~~q 296 (311)
T PF12147_consen 293 KIDQ 296 (311)
T ss_pred hhhh
Confidence 6665
No 220
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.73 E-value=4.8e-06 Score=66.78 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccc-hhhhCHHHHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHL-AEALFPSRFV 167 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~-~~~~~~~~~l 167 (229)
+.+.++||+|+|.|..+..++.. +.+|++++.|..|.. +-.....++.-.+-+||+|.|-++ ..+.+|.+++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL 189 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLL 189 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHH
Confidence 34578999999999999988877 557899999987543 111122222222457999999764 4556999999
Q ss_pred HHHHhcccc-CcEEEEE
Q 027039 168 GEMERTVKI-GGVCMVL 183 (229)
Q Consensus 168 ~~~~~~Lkp-gG~lil~ 183 (229)
+.++.+|+| +|++++.
T Consensus 190 ~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 190 EDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhccCCCcEEEE
Confidence 999999999 8987755
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.73 E-value=0.00033 Score=66.98 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=66.7
Q ss_pred HHHhcccC-CCCCeEEEEcCCCChhhHHHHhC------C-------------------------------------CCeE
Q 027039 87 HLQGKSLL-FNHSKVLCVSAGAGHEVMAFNSI------G-------------------------------------VADV 122 (229)
Q Consensus 87 ~l~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~------g-------------------------------------~~~v 122 (229)
.++..... +++..++|.+||+|.+.++.+.. | ..++
T Consensus 180 a~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i 259 (702)
T PRK11783 180 AILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKF 259 (702)
T ss_pred HHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceE
Confidence 33333444 56889999999999999887542 0 1269
Q ss_pred EEecCCCC----------------CCeEEEcCCCCCCCC--CCceeEEEcc--cchhh---hCHHHHHHHHH---hcccc
Q 027039 123 TGVELMDS----------------LPLVSRADPHNLPFF--DEAFDVAFTA--HLAEA---LFPSRFVGEME---RTVKI 176 (229)
Q Consensus 123 ~~vD~s~~----------------~~~~~~~d~~~~~~~--~~~fD~V~~~--~~~~~---~~~~~~l~~~~---~~Lkp 176 (229)
+|+|+++. .+.+.++|+.+++.+ .++||+|++| +.... .+..++..++. +...+
T Consensus 260 ~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~ 339 (702)
T PRK11783 260 YGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG 339 (702)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC
Confidence 99999987 245889999887643 3579999999 22111 12233444444 44448
Q ss_pred CcEEEEEeec
Q 027039 177 GGVCMVLMEE 186 (229)
Q Consensus 177 gG~lil~~~~ 186 (229)
|+.++++++.
T Consensus 340 g~~~~llt~~ 349 (702)
T PRK11783 340 GWNAALFSSS 349 (702)
T ss_pred CCeEEEEeCC
Confidence 9999877775
No 222
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.73 E-value=0.0003 Score=57.40 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC------CCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL------PFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~------~~~~~~fD 150 (229)
-..++.||||.=+|+-+.++|.. ..++|+++|+++. .+.++++++.+. ..+.++||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 47889999999999988888776 4679999999987 344777776541 23568999
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
++|..+-- .+......+..+++|+||.+++
T Consensus 152 faFvDadK--~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 152 FAFVDADK--DNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EEEEccch--HHHHHHHHHHHhhcccccEEEE
Confidence 99985321 1234778999999999999664
No 223
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.69 E-value=0.00017 Score=61.27 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=62.9
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCeE-----------E----EcCCC--CC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPLV-----------S----RADPH--NL 142 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~~-----------~----~~d~~--~~ 142 (229)
..++..+......-.+.+|||+|||+|...-+..+. ...+++++|.|+.+.++ . ..+.. ..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 444554443333346679999999999877776665 45689999999885430 0 00000 01
Q ss_pred CCCCCceeEEEcccchhhh-C--HHHHHHHHHhccccCcEEEEEeecCCccc
Q 027039 143 PFFDEAFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEECAGRE 191 (229)
Q Consensus 143 ~~~~~~fD~V~~~~~~~~~-~--~~~~l~~~~~~LkpgG~lil~~~~~~~~~ 191 (229)
++ ...|+|++++++..+ + ..++++.+.+.+++ .+++++......
T Consensus 99 ~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~---~LVlVEpGt~~G 145 (274)
T PF09243_consen 99 PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP---VLVLVEPGTPAG 145 (274)
T ss_pred cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC---cEEEEcCCChHH
Confidence 22 234999999888777 3 24455666555555 444555544333
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00038 Score=61.23 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=73.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C--CCeEEEecCCCC---------------CCeEEEcCCCCCC---CCCCceeE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G--VADVTGVELMDS---------------LPLVSRADPHNLP---FFDEAFDV 151 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g--~~~v~~vD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~ 151 (229)
..++|.+|||+++++|.-+..+++. . ...|+++|.++. .+.....|....+ ...++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 4478999999999999999999887 2 235699999987 2336666765443 22236999
Q ss_pred EEcc------cc-------hhhh----------CHHHHHHHHHhccccCcEEEEEeecCCcccHH-HHHHHHhcCce
Q 027039 152 AFTA------HL-------AEAL----------FPSRFVGEMERTVKIGGVCMVLMEECAGREIK-QIVELFRTSRF 204 (229)
Q Consensus 152 V~~~------~~-------~~~~----------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~-~l~~l~~~~~~ 204 (229)
|+.. .+ .+.. ...+++..+.+.|||||.++-.+-.-...+.+ -+.....+..-
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~ 309 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPD 309 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCC
Confidence 9975 11 1111 12578899999999999977555443333333 34445544433
No 225
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.001 Score=54.74 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=67.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-----------EEEcCCCCCC---CCCCceeEEEcc-cc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLP---FFDEAFDVAFTA-HL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-----------~~~~d~~~~~---~~~~~fD~V~~~-~~ 157 (229)
...++..+||||+.||-++.-+.+.|...|+|+|..-..+. +...+++.+. + .+..|++++. .+
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~DvSF 154 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TEKPDLIVIDVSF 154 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-ccCCCeEEEEeeh
Confidence 34688999999999999999999999999999999875221 3334444432 2 2378899985 23
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. ....++-.+...++|+|.+++.+..
T Consensus 155 I---SL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 155 I---SLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred h---hHHHHHHHHHHhcCCCceEEEEecc
Confidence 3 3677888899999999988877644
No 226
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.59 E-value=8e-05 Score=65.84 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCC-CCCCceeEEEcccch
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLP-FFDEAFDVAFTAHLA 158 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~-~~~~~fD~V~~~~~~ 158 (229)
+.+|||+.||+|..++.++.. |...|+++|+++.. +++.++|+..+- -....||+|...-+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 468999999999999999987 67799999999872 346666666532 123579999986432
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.|..++..+.+.+++||.+++.
T Consensus 125 ---s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ---TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---CcHHHHHHHHHhcccCCEEEEE
Confidence 3678999999999999998866
No 227
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00029 Score=56.02 Aligned_cols=92 Identities=25% Similarity=0.173 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCC-C-CCC-CceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNL-P-FFD-EAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~~~-~~fD~V~~~ 155 (229)
-.+.++||+=+|+|..+.+...+|...++.+|.+.. ...++..|+... + ... ++||+|+..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 378999999999999999999999999999999976 233666776632 1 212 259999997
Q ss_pred c-chhhh-CHHHHHHH--HHhccccCcEEEEEeec
Q 027039 156 H-LAEAL-FPSRFVGE--MERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~-~~~~~-~~~~~l~~--~~~~LkpgG~lil~~~~ 186 (229)
- +...+ ++...+.. -...|+|+|.+++-.+.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 2 22222 33444444 45679999997765554
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.52 E-value=0.001 Score=50.70 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhc-ccCCCCCeEEEEcCCCChhhHHHHh-----CCCCeEEEecCCCCCCe------------------E
Q 027039 79 TSYAHFFKHLQGK-SLLFNHSKVLCVSAGAGHEVMAFNS-----IGVADVTGVELMDSLPL------------------V 134 (229)
Q Consensus 79 ~~~~~~~~~l~~~-~~~~~~~~vLDiG~G~G~~~~~l~~-----~g~~~v~~vD~s~~~~~------------------~ 134 (229)
+.+..++..+... ....+...|+|+|||.|+++..++. ....+|+++|.++...+ +
T Consensus 7 ~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (141)
T PF13679_consen 7 ERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSF 86 (141)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchh
Confidence 3344444444332 3346788999999999999999999 54459999999987322 2
Q ss_pred EEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 135 SRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 135 ~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
.+++..+.. .....++++.-|....+.+ .+++...+ |+-.+++.++.+.
T Consensus 87 ~~~~~~~~~-~~~~~~~~vgLHaCG~Ls~-~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 87 IQGDIADES-SSDPPDILVGLHACGDLSD-RALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred hccchhhhc-ccCCCeEEEEeecccchHH-HHHHHHHH---cCCCEEEEcCCcc
Confidence 222222211 1455667766554443322 23333333 6666666666643
No 229
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.49 E-value=0.00078 Score=59.24 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=64.1
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCC--------C---C-----C
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLP--------F---F-----D 146 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~--------~---~-----~ 146 (229)
.++||++||+|.++..++... .+|+|+|+++.+ +.++.+|+.++- + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999988874 599999999872 347788876521 1 0 1
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
..||+|+..-- ..--..++++.+. +|++.++ +++...---+.+..+.+..++.++.-++-
T Consensus 278 ~~~d~v~lDPP-R~G~~~~~l~~l~---~~~~ivY--vsC~p~tlaRDl~~L~~~Y~l~~v~~~Dm 337 (353)
T TIGR02143 278 YNCSTIFVDPP-RAGLDPDTCKLVQ---AYERILY--ISCNPETLKANLEQLSETHRVERFALFDQ 337 (353)
T ss_pred CCCCEEEECCC-CCCCcHHHHHHHH---cCCcEEE--EEcCHHHHHHHHHHHhcCcEEEEEEEccc
Confidence 23799888521 1001234444444 3677644 33322222334555544455555554443
No 230
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.43 E-value=0.00092 Score=58.99 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCC-C-CC--------------
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNL-P-FF-------------- 145 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~-~-~~-------------- 145 (229)
+.++||++||+|.++..++.. ..+|+|+|.++.+ +.++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 357999999999999988877 4599999999872 34778887652 1 10
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
..+||+|+..-=-. --..++++.+.+ |++.++ +++...--.+.+..+.+..++.++.-++-
T Consensus 286 ~~~~D~v~lDPPR~-G~~~~~l~~l~~---~~~ivy--vSC~p~tlarDl~~L~~gY~l~~v~~~Dm 346 (362)
T PRK05031 286 SYNFSTIFVDPPRA-GLDDETLKLVQA---YERILY--ISCNPETLCENLETLSQTHKVERFALFDQ 346 (362)
T ss_pred CCCCCEEEECCCCC-CCcHHHHHHHHc---cCCEEE--EEeCHHHHHHHHHHHcCCcEEEEEEEccc
Confidence 12589999852111 012344455543 666644 33322222233554544555555555544
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.43 E-value=0.00029 Score=59.40 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=58.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCC---CceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFD---EAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~---~~fD~V~~~~ 156 (229)
.+.++..|+|||+|.|.++..|.+.+ .+++++|+++. .++++.+|+.++...+ +.-..|++|
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N- 104 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGN- 104 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEE-
T ss_pred CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEE-
Confidence 44689999999999999999999997 69999999976 4568999999987544 456677776
Q ss_pred chhhhCHHHHHHHHHhcccc
Q 027039 157 LAEALFPSRFVGEMERTVKI 176 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~Lkp 176 (229)
+.. .....++.++...-+.
T Consensus 105 lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 105 LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp ETG-TGHHHHHHHHHHHGGG
T ss_pred ecc-cchHHHHHHHhhcccc
Confidence 222 1234455555554444
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.39 E-value=0.00078 Score=62.30 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-C--------CCeEEEecCCCCCC---------------eEEEcCCCCC-----CCCC
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-G--------VADVTGVELMDSLP---------------LVSRADPHNL-----PFFD 146 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g--------~~~v~~vD~s~~~~---------------~~~~~d~~~~-----~~~~ 146 (229)
.+.+|||.|||+|.+..++... . ..+++|+|+++..+ .+...|.... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999888754 1 14789999987622 1232332211 1112
Q ss_pred CceeEEEcc--cchhhh----------------------------------C-----------HHHHH-HHHHhccccCc
Q 027039 147 EAFDVAFTA--HLAEAL----------------------------------F-----------PSRFV-GEMERTVKIGG 178 (229)
Q Consensus 147 ~~fD~V~~~--~~~~~~----------------------------------~-----------~~~~l-~~~~~~LkpgG 178 (229)
+.||+|++| +..... . ...++ +.+.+.|++||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 589999999 211000 0 01133 56788999999
Q ss_pred EEEEEeecC--CcccHHHHHH-HHhcCceeEeeeee
Q 027039 179 VCMVLMEEC--AGREIKQIVE-LFRTSRFVDAANVT 211 (229)
Q Consensus 179 ~lil~~~~~--~~~~~~~l~~-l~~~~~~~~~~~~~ 211 (229)
++.++++.. .......+.+ ++++..+..+..+.
T Consensus 191 ~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~ 226 (524)
T TIGR02987 191 YVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQ 226 (524)
T ss_pred EEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECC
Confidence 999998873 2334455655 56777787777763
No 233
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.00017 Score=55.29 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=40.6
Q ss_pred CCCCCCCceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 141 NLPFFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 141 ~~~~~~~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..+|.+++.|+|.+.|+.+|+. ...++++.++.|||||++-+.++.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 3679999999999999999993 467899999999999999888765
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.32 E-value=0.00078 Score=53.47 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
...+.|+|+|+|.++...++. ..+|++++.+|. .++++.+|+.+..| ...|+|+|--+.-.+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 478999999999999888777 459999999887 45588999999888 578999995443333
Q ss_pred ---CHHHHHHHHHhccccCcEEE
Q 027039 162 ---FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 162 ---~~~~~l~~~~~~LkpgG~li 181 (229)
.....+..+.+.||-++.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 22456777777888888854
No 235
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00098 Score=53.18 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=61.0
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------------CeEEEcCCCCCCCCCCc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------------PLVSRADPHNLPFFDEA 148 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------------~~~~~~d~~~~~~~~~~ 148 (229)
..++++++|+|+=.|.|.++.-++.. +.+.|++.-+.+.. .+.+-.+.-.++ +.+.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 35699999999999999999999876 45688887555430 111112222223 4456
Q ss_pred eeEEEcccchhhh--------CHHHHHHHHHhccccCcEEEEE
Q 027039 149 FDVAFTAHLAEAL--------FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 149 fD~V~~~~~~~~~--------~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.|+++.+...+-+ ...++..++++.|||||.+.+.
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 7777765222211 2478889999999999997754
No 236
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.24 E-value=0.00093 Score=52.19 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=65.2
Q ss_pred eEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCC--CCCCc-eeEEEcc----
Q 027039 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEA-FDVAFTA---- 155 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~-fD~V~~~---- 155 (229)
.|+|+.||.|..+++++... .+|+++|+++. .+.++++|..+.. +..+. +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 68999999999999999994 49999999987 4569999987742 22222 8999986
Q ss_pred ---c-------chhhhCH---HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHH----HhcCceeEeeeeeecCCe
Q 027039 156 ---H-------LAEALFP---SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL----FRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 156 ---~-------~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l----~~~~~~~~~~~~~~~~~~ 216 (229)
+ +...+.| .++++.+.+. .+ .+++..+. ..+..++.++ +....-.+++..-..|..
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~--nv~l~LPR--n~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~~ 153 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TP--NVVLFLPR--NSDLNQLSQLTRELFGPSKKCEVEQNYLNGKL 153 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S---EEEEEET--TB-HHHHHHT----T-TTEEEEEEEEEETTEE
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhh-CC--CEEEEeCC--CCCHHHHHHHhccccCCCCeEEEEEehcCCee
Confidence 1 1112222 3444444333 23 34444554 5566666655 455566667766666654
No 237
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.24 E-value=0.0039 Score=54.01 Aligned_cols=94 Identities=9% Similarity=0.004 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-----CCCeEEEecCCCCC---------------Ce--EEEcCCCC----CCC--CC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMDSL---------------PL--VSRADPHN----LPF--FD 146 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-----g~~~v~~vD~s~~~---------------~~--~~~~d~~~----~~~--~~ 146 (229)
.++..++|+|||+|.-+..|.+. ....++++|+|... +. -+.+|..+ ++- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 67889999999999876655432 12389999999752 22 24566544 211 12
Q ss_pred CceeEEEcc-cchhhhCH---HHHHHHHHh-ccccCcEEEEEeecCC
Q 027039 147 EAFDVAFTA-HLAEALFP---SRFVGEMER-TVKIGGVCMVLMEECA 188 (229)
Q Consensus 147 ~~fD~V~~~-~~~~~~~~---~~~l~~~~~-~LkpgG~lil~~~~~~ 188 (229)
....+++.- .....+.| ..+++++.+ .|+|||.+++-++.+.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 335565543 33333334 568889999 9999999998887753
No 238
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.21 E-value=0.0008 Score=58.54 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCC-CCeEEEecCCCCCCe----------------------EEEcCCCCC-CCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL----------------------VSRADPHNL-PFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~~~~----------------------~~~~d~~~~-~~~~~~fD 150 (229)
+.-.+||-+|.|.|....++.+.| ..+++-+|++|.+++ ++..|+.++ .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 556789999999999999999995 889999999998665 334444432 12245899
Q ss_pred EEEccc------chhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 151 VAFTAH------LAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 151 ~V~~~~------~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+|+..- ...-+.-.++..-+.+.|+++|.+++...
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 999751 12222457888999999999999775543
No 239
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.21 E-value=0.00025 Score=60.46 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCC-C-CCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNL-P-FFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~-~-~~~~~fD~V~~ 154 (229)
..++..|||+++++|.-+..+++. +.+.+++.|+++. .+.....|.... + .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 478899999999999999999887 4679999999987 223444555553 1 22346999998
Q ss_pred c----c---------chhhh----------CHHHHHHHHHhcc----ccCcEEEEEeec
Q 027039 155 A----H---------LAEAL----------FPSRFVGEMERTV----KIGGVCMVLMEE 186 (229)
Q Consensus 155 ~----~---------~~~~~----------~~~~~l~~~~~~L----kpgG~lil~~~~ 186 (229)
. . ..+.. ...+++..+.+.+ ||||+++-.+-.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 5 0 11110 0256889999999 999997766544
No 240
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.00062 Score=57.99 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=89.6
Q ss_pred cccCchhHHhhhhhHHHHHHHHHhc----ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------
Q 027039 67 RLWSSKSWKQQVTSYAHFFKHLQGK----SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------- 131 (229)
Q Consensus 67 ~~~~~~~w~~~~~~~~~~~~~l~~~----~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------- 131 (229)
+-|++..-+++...+..+++.+-.. ..-+...+||--|||.|.++..|+..|. .+.|=+.|--|
T Consensus 117 RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~ 195 (369)
T KOG2798|consen 117 RDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYC 195 (369)
T ss_pred HHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhh
Confidence 4566655555556666666655321 2224467899999999999999998876 55554444220
Q ss_pred ---------------------------Ce-----------------EEEcCCCCCC---CCCCceeEEEcccchhhh-CH
Q 027039 132 ---------------------------PL-----------------VSRADPHNLP---FFDEAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 132 ---------------------------~~-----------------~~~~d~~~~~---~~~~~fD~V~~~~~~~~~-~~ 163 (229)
+. .-.||+.+.- -..+.||+|+.+.+.... +.
T Consensus 196 ~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Ni 275 (369)
T KOG2798|consen 196 KQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNI 275 (369)
T ss_pred ccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHH
Confidence 00 1223332211 112479999988766666 78
Q ss_pred HHHHHHHHhccccCcEEEEEeec--------CC-------cccHHHHHHHHhcCceeEeeee
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEE--------CA-------GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~--------~~-------~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.+.++.+..+|||||.-+ -++. ++ +.+.+.+.++.+..+|+.+++-
T Consensus 276 leYi~tI~~iLk~GGvWi-NlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 276 LEYIDTIYKILKPGGVWI-NLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHHHHhccCCcEEE-eccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999999999999754 3221 11 2356777777776666666543
No 241
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.17 E-value=0.0023 Score=52.69 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=67.0
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC-------------CCeEEEcCCCCCC---CCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS-------------LPLVSRADPHNLP---FFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~ 151 (229)
+...++|+.+||-+|+++|.....++.. +.+-|++++.|+- .+--+.-|+.... ..-.-.|+
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEE
Confidence 3456799999999999999999998888 5678999999875 1223344444321 12246888
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeecC
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
||+. +..-....-+.-++...||+||.+++.+...
T Consensus 230 IFaD-vaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 230 IFAD-VAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred Eecc-CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 8883 3321112335567888999999998887653
No 242
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00017 Score=55.86 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe------------------EEEcCCC--CCCCCCCceeEEE
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL------------------VSRADPH--NLPFFDEAFDVAF 153 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~------------------~~~~d~~--~~~~~~~~fD~V~ 153 (229)
.+..||++|.|- |..+..++.. +...|..+|-++..+. +...+.. +...+..+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 457899999994 6666666665 6668999998876322 1111111 1112346899999
Q ss_pred cccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
+....-.. .-..+++.|+..|+|.|.-+ +.....+++.+.+....+..+|.-.
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al-~fsPRRg~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRAL-LFSPRRGQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCccccee-EecCcccchHHHHHHHHHhceeEEE
Confidence 97433322 35678899999999999955 5555667788888888887776543
No 243
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.03 E-value=0.00081 Score=57.59 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=48.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC-------------CeEEEcCCCCCC--CCCC--ceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL-------------PLVSRADPHNLP--FFDE--AFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~-------------~~~~~~d~~~~~--~~~~--~fD~V~ 153 (229)
..+++..++|.+||.|..+..+++. + .++|+|+|.++.+ +.++++|..++. .+++ ++|.|+
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 3468889999999999999999988 3 5799999999863 446777766642 1122 799998
Q ss_pred cc
Q 027039 154 TA 155 (229)
Q Consensus 154 ~~ 155 (229)
+.
T Consensus 96 ~D 97 (296)
T PRK00050 96 LD 97 (296)
T ss_pred EC
Confidence 86
No 244
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.03 E-value=0.0042 Score=53.83 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=63.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-- 161 (229)
+.-...+|+|.|.|..+..+... +..+-+++.... .++.+.+|..+- .| +-|+|++-.+.++.
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P--~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TP--KGDAIWMKWILHDWTD 251 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CC--CcCeEEEEeecccCCh
Confidence 44578999999999999998885 445667766543 145566666553 33 34699998888877
Q ss_pred -CHHHHHHHHHhccccCcEEEEE
Q 027039 162 -FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 -~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+-.++++++++.|+|||.+++.
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEE
Confidence 3478999999999999998855
No 245
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.0027 Score=51.93 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--C------C--CeEEEecCCCCC----CeEEEcCCCCCC--------CCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--G------V--ADVTGVELMDSL----PLVSRADPHNLP--------FFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g------~--~~v~~vD~s~~~----~~~~~~d~~~~~--------~~~~~fD~V 152 (229)
..-.+++|+.+-+|.+++.++++ . . ..++++|+.+-. +--+++|+.... |..++.|+|
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlV 119 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLV 119 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEE
Confidence 55678999999999999999765 1 1 139999999862 236788888743 556799999
Q ss_pred Eccc---------chhhhC---HHHHHHHHHhccccCcEEEEEeecCC--cccHHHHHHHHhcCceeEee
Q 027039 153 FTAH---------LAEALF---PSRFVGEMERTVKIGGVCMVLMEECA--GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 153 ~~~~---------~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~~--~~~~~~l~~l~~~~~~~~~~ 208 (229)
+|.. +.+.+. ...++.-...+|||||.|+-=.-... ..-..++..+|++.-..+.+
T Consensus 120 vcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv~~~KPr 189 (294)
T KOG1099|consen 120 VCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPR 189 (294)
T ss_pred EeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhceeeecCC
Confidence 9971 222221 13455666789999999763222211 11234566677765555444
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.88 E-value=0.0004 Score=49.97 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=36.5
Q ss_pred EEEcCCCChhhHHHHhC--CC--CeEEEecCCC---C------------CCeEEEcCCCCC--CCCCCceeEEEcccchh
Q 027039 101 LCVSAGAGHEVMAFNSI--GV--ADVTGVELMD---S------------LPLVSRADPHNL--PFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 101 LDiG~G~G~~~~~l~~~--g~--~~v~~vD~s~---~------------~~~~~~~d~~~~--~~~~~~fD~V~~~~~~~ 159 (229)
||||+..|..+..+++. .. .+++++|..+ . .+.+++++..+. .++++++|+++...-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999988887765 22 3799999998 2 234666666542 13357999999853222
Q ss_pred hhCHHHHHHHHHhccccCcEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil 182 (229)
.-.....+..+.+.|+|||.+++
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEE
Confidence 22356678889999999998764
No 247
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.83 E-value=0.016 Score=51.00 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCC----------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLP---------------- 143 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~---------------- 143 (229)
.++ ++||+-||.|.++..++... .+|+|+|.++. .++|+.+++++..
T Consensus 196 ~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~ 273 (352)
T PF05958_consen 196 SKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGID 273 (352)
T ss_dssp -TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-
T ss_pred CCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhh
Confidence 344 89999999999999999984 49999999977 3447776654321
Q ss_pred CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 144 FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
..+..+|+|+..---..++ ..+++.+. ++. ++ +.+++...--.+.+..+.+..++.++.-++-
T Consensus 274 ~~~~~~d~vilDPPR~G~~-~~~~~~~~---~~~-~i-vYvSCnP~tlaRDl~~L~~~y~~~~v~~~Dm 336 (352)
T PF05958_consen 274 LKSFKFDAVILDPPRAGLD-EKVIELIK---KLK-RI-VYVSCNPATLARDLKILKEGYKLEKVQPVDM 336 (352)
T ss_dssp GGCTTESEEEE---TT-SC-HHHHHHHH---HSS-EE-EEEES-HHHHHHHHHHHHCCEEEEEEEEE-S
T ss_pred hhhcCCCEEEEcCCCCCch-HHHHHHHh---cCC-eE-EEEECCHHHHHHHHHHHhhcCEEEEEEEeec
Confidence 1223688887641000011 23444443 232 43 3555532222334555555555555554444
No 248
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0078 Score=53.01 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=71.5
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCC---------------------------------C-------eEEEe
Q 027039 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------A-------DVTGV 125 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~---------------------------------~-------~v~~v 125 (229)
..++.+...+++..++|--||+|.+.++.+..+. . .++|+
T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 3444556667888999999999999999876631 1 27799
Q ss_pred cCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc-----cchhhhC----HHHHHHHHHhccccCcEE
Q 027039 126 ELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA-----HLAEALF----PSRFVGEMERTVKIGGVC 180 (229)
Q Consensus 126 D~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~-----~~~~~~~----~~~~l~~~~~~LkpgG~l 180 (229)
|+++. .++|.++|+..++-+-+.+|+|+|| .+..+.. ..++.+.+++.++--+..
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 99987 3559999999976433799999999 1222211 234556666777777777
Q ss_pred EEEeec
Q 027039 181 MVLMEE 186 (229)
Q Consensus 181 il~~~~ 186 (229)
++.+.+
T Consensus 341 v~tt~e 346 (381)
T COG0116 341 VFTTSE 346 (381)
T ss_pred EEEccH
Confidence 766654
No 249
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.78 E-value=0.016 Score=48.34 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-----------------------EEEcCCCCCCCCCCc-eeE
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------------VSRADPHNLPFFDEA-FDV 151 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-----------------------~~~~d~~~~~~~~~~-fD~ 151 (229)
...+||++|+|+|-.+...+.....+|.-.|....... ...+...+..+-... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 46679999999998888877764458888888765111 111112221111223 999
Q ss_pred EEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 152 V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
|++..+..+. .+..++.-+...|..+|.+++.+.-.+
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9998655555 778888889999999997666665544
No 250
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.67 E-value=0.0059 Score=49.12 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------------CeEEEcCCCC-CC--CCCCc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------------PLVSRADPHN-LP--FFDEA 148 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------------~~~~~~d~~~-~~--~~~~~ 148 (229)
++.-...|||||.|-+...|+.. +..-+.|.+|-.+. +.+...+... +| |..++
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 45667899999999999999999 87799999987551 1122222211 11 22222
Q ss_pred eeEEEcc----cchhhhC-----HHHHHHHHHhccccCcEEEEEeecC
Q 027039 149 FDVAFTA----HLAEALF-----PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 149 fD~V~~~----~~~~~~~-----~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.+=.+.. |+-.-.. -..++.+..-+|++||.++.+++..
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 2211111 1111111 1457788889999999999887763
No 251
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.57 E-value=0.0048 Score=47.81 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCeEE-EcCCCC---------CCCCCCceeEEEcccchhhh----
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPLVS-RADPHN---------LPFFDEAFDVAFTAHLAEAL---- 161 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~~~-~~d~~~---------~~~~~~~fD~V~~~~~~~~~---- 161 (229)
+++++-+|+.. .+...++-. |..+++.+|.++-.++-. +..+.. +.--.++||++.|.+..+|.
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGR 80 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGR 80 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhccccccc
Confidence 56777887772 222233333 777899999875433210 111111 11124789999987655544
Q ss_pred --CH------HHHHHHHHhccccCcEEEEEeecC---------CcccHHHHHHHHhcCceeEeee
Q 027039 162 --FP------SRFVGEMERTVKIGGVCMVLMEEC---------AGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 162 --~~------~~~l~~~~~~LkpgG~lil~~~~~---------~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+| .+.+.++.++|||||.+++.++.. .-|....+..+|..++.+.+-.
T Consensus 81 YGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tfs 145 (177)
T PF03269_consen 81 YGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTFS 145 (177)
T ss_pred cCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeeec
Confidence 22 578899999999999999988763 3456677888888887776643
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.52 E-value=0.023 Score=48.23 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCCChhhHH-HHhC-C-CCeEEEecCCCC-----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMA-FNSI-G-VADVTGVELMDS-----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~-l~~~-g-~~~v~~vD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.+|+=||||+=.++.- +++. + ...+.++|+++. .+.|+.+|..+.+..-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999998655544 5544 3 347999999987 3458888887766545789999987
Q ss_pred cchhhh--CHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEAL--FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~--~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.+.... ...+++..+.+.++||..+++=
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 544433 5789999999999999986533
No 253
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.50 E-value=0.048 Score=44.30 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=70.9
Q ss_pred EEEEcCCCChhhHHHHhCC-CCeEEEecCCCCC----------------CeEEEcCCCCCCCCCC-ceeEEEcccchhhh
Q 027039 100 VLCVSAGAGHEVMAFNSIG-VADVTGVELMDSL----------------PLVSRADPHNLPFFDE-AFDVAFTAHLAEAL 161 (229)
Q Consensus 100 vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~-~fD~V~~~~~~~~~ 161 (229)
|+||||-.|.++.+|.+.| ...++++|+++.+ +++..+|..+. ++.+ ..|.|+...+...+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHHH
Confidence 6899999999999999995 4579999999873 44777775542 2233 37888876544422
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeee--eeecCCeeEEEEEEecc
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAAN--VTVNGSNMTRILMRRTR 226 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 226 (229)
-.+++.+....++..-.++ .-+.. ....+...+...+|.-+.+ +...|.-..++...+..
T Consensus 80 -I~~ILe~~~~~~~~~~~lI-LqP~~---~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~ 141 (205)
T PF04816_consen 80 -IIEILEAGPEKLSSAKRLI-LQPNT---HAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGE 141 (205)
T ss_dssp -HHHHHHHTGGGGTT--EEE-EEESS----HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred -HHHHHHhhHHHhccCCeEE-EeCCC---ChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCC
Confidence 3556666666666655655 44442 3455666655555544444 45556555555555543
No 254
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.41 E-value=0.017 Score=51.32 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCe---------------EEEcCCCCCC---CCCCceeEEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNLP---FFDEAFDVAF 153 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~---------------~~~~d~~~~~---~~~~~fD~V~ 153 (229)
.++|.+|||+++-+|--+.++|.. +.+.|+|.|.+...+. +...|....| |+. +||-|.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 388999999999999888888876 6679999998877222 4555665544 433 899998
Q ss_pred cccc----------------------hhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHH-HHhcCceeEeee
Q 027039 154 TAHL----------------------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRTSRFVDAAN 209 (229)
Q Consensus 154 ~~~~----------------------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~-l~~~~~~~~~~~ 209 (229)
...- ..+. -..+++..+...+|+||+++-.+-.-...+.+.+.+ .+++...+++..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p 397 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVP 397 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEecc
Confidence 6411 1111 125788899999999999765554433334444443 455554555544
No 255
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.12 E-value=0.036 Score=46.64 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=58.9
Q ss_pred CeEEEEcCCC--ChhhHHHHhC--CCCeEEEecCCCC-------------C--CeEEEcCCCCCC----------C--CC
Q 027039 98 SKVLCVSAGA--GHEVMAFNSI--GVADVTGVELMDS-------------L--PLVSRADPHNLP----------F--FD 146 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~--g~~~v~~vD~s~~-------------~--~~~~~~d~~~~~----------~--~~ 146 (229)
...||||||- -....++++. +..+|+-+|.++. . ..++++|+.+.. + .+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5799999995 3345566655 6779999999875 2 458899987732 1 13
Q ss_pred CceeEEEcccchhhh----CHHHHHHHHHhccccCcEEEEEeecCCcc--cHHHHHHHHh
Q 027039 147 EAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFR 200 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~--~~~~l~~l~~ 200 (229)
...-+++. .+.+++ +|..+++.+.+.|.||..+++.....+.. ..+.+.+.+.
T Consensus 150 rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 150 RPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYA 208 (267)
T ss_dssp S--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHH
T ss_pred CCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 34444444 444444 58999999999999999999776665432 2234445554
No 256
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.01 E-value=0.0089 Score=50.44 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=57.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCC--------------CC-----------CCC-C
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADP--------------HN-----------LPF-F 145 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~--------------~~-----------~~~-~ 145 (229)
.....+.+|||+|||+|...+.....|...+...|.+...+..+..+. .. +-+ .
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 344678999999999999999988887568888888877443111111 10 000 0
Q ss_pred CC--ceeEEEcccchhhhCH-HHH-HHHHHhccccCcEEEEEe
Q 027039 146 DE--AFDVAFTAHLAEALFP-SRF-VGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 146 ~~--~fD~V~~~~~~~~~~~-~~~-l~~~~~~LkpgG~lil~~ 184 (229)
.+ .||+|.+.-.....+. ..+ .......++++|.+++..
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 12 5677666544443322 223 455566789999877554
No 257
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.95 E-value=0.094 Score=42.50 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-----CCCeEEEecCCC--------------CCCeEEEcC
Q 027039 78 VTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMD--------------SLPLVSRAD 138 (229)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-----g~~~v~~vD~s~--------------~~~~~~~~d 138 (229)
+-.+..++..+ .+..|+|+|.-.|.-+...|.. +.++|+|+|+.. ..+++++||
T Consensus 21 m~~~qeli~~~-------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gd 93 (206)
T PF04989_consen 21 MVAYQELIWEL-------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGD 93 (206)
T ss_dssp HHHHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-
T ss_pred HHHHHHHHHHh-------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECC
Confidence 34445666655 6789999999999777666542 457999999942 256699998
Q ss_pred CCCCC----C----CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 139 PHNLP----F----FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 139 ~~~~~----~----~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
..+.. . ......+|+-..-..+.+-.+.++.....+++|+++++
T Consensus 94 s~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 94 SIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred CCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 76632 1 12344566653322223567777889999999999773
No 258
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.017 Score=52.22 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=49.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCC---CCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPF---FDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~---~~~~fD~V~~ 154 (229)
...++.++||+=||.|.++..++... .+|+|+|++++. +.|+.+++++... ....+|.|+.
T Consensus 290 ~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 290 ELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 33577899999999999999999774 499999999873 4488888877532 2358899997
Q ss_pred c
Q 027039 155 A 155 (229)
Q Consensus 155 ~ 155 (229)
.
T Consensus 369 D 369 (432)
T COG2265 369 D 369 (432)
T ss_pred C
Confidence 4
No 259
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.65 E-value=0.047 Score=46.88 Aligned_cols=94 Identities=19% Similarity=0.266 Sum_probs=59.1
Q ss_pred CCeEEEEcCCCChhhHHHHhC---------C------------CCeEEEecCCCC-------------------------
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI---------G------------VADVTGVELMDS------------------------- 130 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~---------g------------~~~v~~vD~s~~------------------------- 130 (229)
..+||+||.|.|....+++.. . ..+++.+|+.+=
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 479999999999776666432 0 137888988642
Q ss_pred ---------CCeEEEcCCCCCCCCC-------CceeEEEcccchhhh------CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 131 ---------LPLVSRADPHNLPFFD-------EAFDVAFTAHLAEAL------FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 131 ---------~~~~~~~d~~~~~~~~-------~~fD~V~~~~~~~~~------~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
.+.|.+.|+-....++ .+.|+|..-.....+ .-.+++..+-..++||-.++ +++..+
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLL-VvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLL-VVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEE-EEcCCC
Confidence 1226677766654221 235555544333333 13678999999999988877 666555
Q ss_pred ccc
Q 027039 189 GRE 191 (229)
Q Consensus 189 ~~~ 191 (229)
.|+
T Consensus 246 SYS 248 (315)
T PF11312_consen 246 SYS 248 (315)
T ss_pred Cch
Confidence 443
No 260
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.64 E-value=0.011 Score=44.46 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=29.4
Q ss_pred eEEEEcCCCChhhHHHHhCC-CCeEEEecCCCCCCe
Q 027039 99 KVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL 133 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~~~~ 133 (229)
.++|||||.|..+..++..+ .++++++|+++.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 48999999999999998883 348999999988443
No 261
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.017 Score=52.50 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=36.2
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~ 133 (229)
+...+..+..++|+.||+|.++.+++.. ...|+|++++++.+.
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVE 419 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcc
Confidence 3356788899999999999999999887 669999999988443
No 262
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.52 E-value=0.039 Score=45.92 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC--------------eEEEcCCCCCCC
Q 027039 80 SYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLPF 144 (229)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~--------------~~~~~d~~~~~~ 144 (229)
.+..+++.+. ..+.+..+|+|||||.-.++...... +...++|.|++...+ .+...|...-+
T Consensus 91 ~Ld~fY~~if--~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~- 167 (251)
T PF07091_consen 91 NLDEFYDEIF--GRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP- 167 (251)
T ss_dssp GHHHHHHHHC--CCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-
T ss_pred hHHHHHHHHH--hcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-
Confidence 3344444442 23467899999999999998887766 445999999998733 25566666543
Q ss_pred CCCceeEEEcccchhhh
Q 027039 145 FDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~ 161 (229)
+....|+.+.--+.+.+
T Consensus 168 ~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCL 184 (251)
T ss_dssp TTSEESEEEEET-HHHH
T ss_pred CCCCcchhhHHHHHHHH
Confidence 35789999987555544
No 263
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.50 E-value=0.044 Score=47.79 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=58.9
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcC-CCCCCCCCCceeEEEcccchh
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRAD-PHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d-~~~~~~~~~~fD~V~~~~~~~ 159 (229)
...+|+.+|+=+|+|. |..+..++.. | .+|+++|.+++.. .++.+. .....--.+.||+|+....
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 4568999999999982 5788888885 8 5999999998832 244433 1111111234999987432
Q ss_pred hhCHHHHHHHHHhccccCcEEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...+....+.||+||+++++
T Consensus 239 ----~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 ----PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ----hhhHHHHHHHHhcCCEEEEE
Confidence 45677788999999998854
No 264
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.062 Score=46.85 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCC----CCCCCCCCceeEEEc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADP----HNLPFFDEAFDVAFT 154 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~----~~~~~~~~~fD~V~~ 154 (229)
...+|||+|.|+|.-..++... | -.+++.++.|+. ...+...|+ ..+|. ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhh
Confidence 4556999999999887776655 3 235666666654 111222222 22332 346777776
Q ss_pred cc-chhhh--C-HHHHHHHHHhccccCcEEEEEeecCCcccHHHHH
Q 027039 155 AH-LAEAL--F-PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIV 196 (229)
Q Consensus 155 ~~-~~~~~--~-~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~ 196 (229)
.+ +.+.- . ....++.+...+.|||.++++- ......++.+.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE-rGtp~Gf~~I~ 236 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE-RGTPAGFERIL 236 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEe-CCCchhHHHHH
Confidence 43 22211 1 2447888899999999988543 33333444333
No 265
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.04 E-value=0.038 Score=41.22 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=56.6
Q ss_pred CCeEEEcCCCC-CCCCCCceeEEEcccchhhhCH----HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 131 LPLVSRADPHN-LPFFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 131 ~~~~~~~d~~~-~~~~~~~fD~V~~~~~~~~~~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
.+.+..+|+.+ ++--+..||+|+...+....+| .++++++.+.++|||.+. +.... ..+.+.+...+|.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~a----~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA--TYSSA----GAVRRALQQAGFE 105 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--B----HHHHHHHHHCTEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE--Eeech----HHHHHHHHHcCCE
Confidence 34567778765 3322478999998765554454 789999999999999955 22211 4578889999998
Q ss_pred EeeeeeecCCeeEEEEEE
Q 027039 206 DAANVTVNGSNMTRILMR 223 (229)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~ 223 (229)
++...+.|.+..++...
T Consensus 106 -v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 106 -VEKVPGFGRKREMLRAV 122 (124)
T ss_dssp -EEEEE-STTSSEEEEEE
T ss_pred -EEEcCCCCCcchheEEE
Confidence 67888888885655544
No 266
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.03 E-value=0.021 Score=41.38 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=26.8
Q ss_pred ceeEEEcccchh--hhC-----HHHHHHHHHhccccCcEEEEEeec
Q 027039 148 AFDVAFTAHLAE--ALF-----PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 148 ~fD~V~~~~~~~--~~~-----~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.||+|+|-.+.. |++ ...+++.+++.|+|||.+++--..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 489999974332 221 367999999999999998876544
No 267
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.01 E-value=1.2 Score=36.39 Aligned_cols=126 Identities=9% Similarity=0.058 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe----------------EEEcCCCCCCCC-CCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------------VSRADPHNLPFF-DEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~-~~~fD~V~~~~ 156 (229)
+.+.++.||||-.++++.++.+. .+..+++.|+++.+.+ +..+|... ++. +..+|.|+...
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIAG 93 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIAG 93 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccCCcCEEEEeC
Confidence 56677999999999999999988 6778999999998433 44555532 233 44799988754
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh--cCceeEeeeeeecCCeeEEEEEEecc
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR--TSRFVDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
+... --.+++++-.+-|+.==+++ .-+... ...+.+... ++.+....-+...|.-..+++..+..
T Consensus 94 MGG~-lI~~ILee~~~~l~~~~rlI-LQPn~~---~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~~ 160 (226)
T COG2384 94 MGGT-LIREILEEGKEKLKGVERLI-LQPNIH---TYELREWLSANSYEIKAETILEEDGKIYEILVVEKSS 160 (226)
T ss_pred CcHH-HHHHHHHHhhhhhcCcceEE-ECCCCC---HHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecCC
Confidence 4431 12455666666555332333 344333 344555444 33333333345567766777666653
No 268
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.93 E-value=0.19 Score=43.89 Aligned_cols=64 Identities=8% Similarity=-0.122 Sum_probs=36.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC------------C-----CCeEEEecCCCCC----------------------Ce
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI------------G-----VADVTGVELMDSL----------------------PL 133 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~------------g-----~~~v~~vD~s~~~----------------------~~ 133 (229)
......+|+|+||.+|..+..+... + .-+|.--|.-..- +.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3356678999999999888775422 1 0166666765541 11
Q ss_pred EEEcCCCCCCCCCCceeEEEccc
Q 027039 134 VSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 134 ~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
-+-+.+.+.-||+++.|++++.+
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~ 115 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSY 115 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES
T ss_pred ecCchhhhccCCCCceEEEEEec
Confidence 34456666668899999999973
No 269
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.88 E-value=0.34 Score=37.95 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=72.0
Q ss_pred EEcCCCChhhHHHHhC-C-CCeEEEecCCCC--------------------CCe-EEEcCCCCCC----CCCCceeEEEc
Q 027039 102 CVSAGAGHEVMAFNSI-G-VADVTGVELMDS--------------------LPL-VSRADPHNLP----FFDEAFDVAFT 154 (229)
Q Consensus 102 DiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~--------------------~~~-~~~~d~~~~~----~~~~~fD~V~~ 154 (229)
-||=|.=.++.+|++. + ...++++-.... .+. ....|+.++. ...+.||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3566666677777776 4 457777755544 011 3334666543 35689999999
Q ss_pred c--cchhh-----------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 155 A--HLAEA-----------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 155 ~--~~~~~-----------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
| |+... . -...+++.+.++|+++|.+.+.......|+.=.+.++-+..++.-++.+
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 8 44410 1 1267889999999999998877777666655566777777777766654
No 270
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.75 E-value=0.11 Score=45.03 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEc---CCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRA---DPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~---d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..++.+||-.|+|. |..+..++.. |..+|+++|.+++..+ ++.. +..+.....+.+|+|+-.. .
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~-G- 244 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS-G- 244 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-C-
Confidence 35788999999864 6666667766 7767999998866222 1111 1111111123588887532 1
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEe
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
....++...+.+++||+++++-
T Consensus 245 ---~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 245 ---HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEEc
Confidence 1245677888999999988553
No 271
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.69 E-value=0.18 Score=43.56 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=60.8
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCC-C-C---------CCCCCc
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPH-N-L---------PFFDEA 148 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~-~-~---------~~~~~~ 148 (229)
.+...+.+++||-+|+|+ |..+...++. |..+|+.+|+++..++ ...-+.. + . ...+..
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccC
Confidence 355679999999999998 7777777776 9999999999988443 1111111 1 0 122345
Q ss_pred eeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 149 fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+|+.+..... +..++.....+|+||.++ .+..
T Consensus 243 ~d~~~dCsG~-----~~~~~aai~a~r~gGt~v-lvg~ 274 (354)
T KOG0024|consen 243 PDVTFDCSGA-----EVTIRAAIKATRSGGTVV-LVGM 274 (354)
T ss_pred CCeEEEccCc-----hHHHHHHHHHhccCCEEE-Eecc
Confidence 7877754322 345666788899999955 4444
No 272
>PRK10742 putative methyltransferase; Provisional
Probab=94.61 E-value=0.043 Score=45.71 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.9
Q ss_pred cCCCCC--eEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 93 LLFNHS--KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 93 ~~~~~~--~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
.++++. +|||.-+|+|..++.++..|+ +|+++|-++.
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~ 121 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPV 121 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHH
Confidence 446766 899999999999999999998 6999999876
No 273
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.50 E-value=0.24 Score=44.03 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=15.4
Q ss_pred CCCeEEEEcCCCChhhHHH
Q 027039 96 NHSKVLCVSAGAGHEVMAF 114 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l 114 (229)
...+|+|+|||+|..+..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred cceeEEEecCCCCccHHHH
Confidence 3668999999999777654
No 274
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.50 E-value=0.03 Score=46.25 Aligned_cols=66 Identities=27% Similarity=0.330 Sum_probs=41.8
Q ss_pred cCCCC--CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------------------CCeEEEcCCCC-CCCC
Q 027039 93 LLFNH--SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------------LPLVSRADPHN-LPFF 145 (229)
Q Consensus 93 ~~~~~--~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------------------~~~~~~~d~~~-~~~~ 145 (229)
.++++ .+|||.-+|-|..+..++..|+ +|+++|-|+. .++++++|..+ ++.+
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~ 148 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP 148 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc
Confidence 33554 3899999999999999998887 8999999976 24588898887 5556
Q ss_pred CCceeEEEcccchh
Q 027039 146 DEAFDVAFTAHLAE 159 (229)
Q Consensus 146 ~~~fD~V~~~~~~~ 159 (229)
+++||+|...-+..
T Consensus 149 ~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 149 DNSFDVVYFDPMFP 162 (234)
T ss_dssp SS--SEEEE--S--
T ss_pred CCCCCEEEECCCCC
Confidence 78999999874433
No 275
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.26 E-value=0.13 Score=44.11 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccc--CCCCCeEEEEcCCCChhhHHHH-hC-CCCeEEEecCCCC-----------------CCeEEEcCC
Q 027039 81 YAHFFKHLQGKSL--LFNHSKVLCVSAGAGHEVMAFN-SI-GVADVTGVELMDS-----------------LPLVSRADP 139 (229)
Q Consensus 81 ~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~l~-~~-g~~~v~~vD~s~~-----------------~~~~~~~d~ 139 (229)
|-+++..++.... ....-++||||+|....---|. .. ++ +++|+|+++. .+.+++..-
T Consensus 85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 3444555544321 1235689999999875433333 33 66 9999999976 233433321
Q ss_pred C-C----CCCCCCceeEEEccc-chhhh----------------------CH-----------------HHHHHHHHh-c
Q 027039 140 H-N----LPFFDEAFDVAFTAH-LAEAL----------------------FP-----------------SRFVGEMER-T 173 (229)
Q Consensus 140 ~-~----~~~~~~~fD~V~~~~-~~~~~----------------------~~-----------------~~~l~~~~~-~ 173 (229)
. . +.-+++.||+.+||- +.... .| .+|+.+|.+ .
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES 243 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKES 243 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHH
T ss_pred ccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHH
Confidence 1 1 112346899999981 10000 00 123333332 1
Q ss_pred cc-cCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee-cCCeeEEEE
Q 027039 174 VK-IGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV-NGSNMTRIL 221 (229)
Q Consensus 174 Lk-pgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~ 221 (229)
+. ..-..++.+--....+..++...+++.+...+..++- .|...+.++
T Consensus 244 ~~~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e~~QG~t~rw~l 293 (299)
T PF05971_consen 244 LQLKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTEMCQGQTKRWIL 293 (299)
T ss_dssp HHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETTEEEEEE
T ss_pred HHhCCCcEEEeecccCcccHHHHHHHHHhcCCceEEEEEccCCceEEEEE
Confidence 21 1234444444466778889999998877666555432 466655554
No 276
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=0.19 Score=46.14 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCChhhHHHHh---C--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 97 HSKVLCVSAGAGHEVMAFNS---I--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~---~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...|.-+|+|-|.+..+..+ . ..-++++++-+|.. +.++.+|+..++.+..+.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 45688999999987766432 2 22389999999883 348889999998656899999984
Q ss_pred chhhh-C---HHHHHHHHHhccccCcEEE
Q 027039 157 LAEAL-F---PSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 157 ~~~~~-~---~~~~l~~~~~~LkpgG~li 181 (229)
+...+ + -.+.+..+.+.|||+|..+
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 22222 2 2679999999999999854
No 277
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.07 E-value=0.13 Score=37.28 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD 129 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~ 129 (229)
++...-.|||||.|.+..-|.+.|+ .=.|+|.-.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 4677899999999999999998876 556888654
No 278
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.02 E-value=0.086 Score=46.26 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEE---------EcCCCC-C-----CCCC-CceeEEEcc
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVS---------RADPHN-L-----PFFD-EAFDVAFTA 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~---------~~d~~~-~-----~~~~-~~fD~V~~~ 155 (229)
..++.+|+=+|||+ |..+..+++. |..+|+.+|.++..++.. .....+ . .... ..+|+++-.
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 34555999999998 8888888877 888999999998844421 111110 0 0111 268988853
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.- -...+..+.+.++|||.++++--.
T Consensus 246 ~G-----~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 246 VG-----SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CC-----CHHHHHHHHHHhcCCCEEEEEecc
Confidence 21 234788999999999998855433
No 279
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.95 E-value=0.21 Score=42.56 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCCC--CCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHNL--PFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~V 152 (229)
....++|-||.|.|......... ...++.-+|+... .+..+.||...+ ....++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 66789999999999988877766 5667888888765 233566665442 1336899999
Q ss_pred Eccc---c--hhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAH---L--AEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~---~--~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+... + ...++...+++-+.+.||+||.++..-
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9752 1 112245678899999999999977443
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.89 E-value=0.2 Score=46.23 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCCCC-----------CC---------
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADPHN-----------LP--------- 143 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~~~-----------~~--------- 143 (229)
..++.+|+=+|+|. |..+...+.. |. +|+++|.++.. .++...+..+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 35799999999997 8788777776 87 89999999762 2233222211 00
Q ss_pred -CCC--CceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 144 -FFD--EAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 144 -~~~--~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+.+ +.+|+|+........ .|.-+.+++.+.+||||.++.+.-
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 368999975433222 343445999999999999875543
No 281
>PHA01634 hypothetical protein
Probab=93.82 E-value=0.097 Score=39.15 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=51.8
Q ss_pred hhHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------EEEcC----C
Q 027039 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------VSRAD----P 139 (229)
Q Consensus 72 ~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------~~~~d----~ 139 (229)
.-|+....++..+ --.+.+|+|||++-|.-++.++-+|...|+++++++...+ +...| .
T Consensus 13 ~ywrey~~~Y~~i---------dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~ 83 (156)
T PHA01634 13 DYWREYPHAYGML---------NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK 83 (156)
T ss_pred hHHHHHHHHhhhe---------eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeec
Confidence 3466555554432 1368899999999999999999999999999999987322 11111 1
Q ss_pred CCCCCCCCceeEEEcc
Q 027039 140 HNLPFFDEAFDVAFTA 155 (229)
Q Consensus 140 ~~~~~~~~~fD~V~~~ 155 (229)
.+++-.-+.||+.+..
T Consensus 84 ~eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 84 GEWNGEYEDVDIFVMD 99 (156)
T ss_pred ccccccCCCcceEEEE
Confidence 2344445788888764
No 282
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.77 E-value=0.36 Score=42.73 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=60.7
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCCCC-C-----CC-CCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADPHN-L-----PF-FDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~~~-~-----~~-~~~~fD~V 152 (229)
...+.++.+||.+|||. |..+..+++. |..+++++|.+++.. .++...-.+ . .+ .+..+|+|
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 34567889999999988 8888888877 765799998876522 122111110 0 11 12368988
Q ss_pred Ecccchh----------------hhCHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAHLAE----------------ALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~~~~----------------~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+-..-.+ +-++...+.++.+.++|+|+++.+-
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 8642111 0134567899999999999988653
No 283
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.74 E-value=0.14 Score=39.01 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=39.0
Q ss_pred eEEEecCCCCC----------------CeEEEcCCCCCC--CCCCceeEEEcc--cchh---hh--CH---HHHHHHHHh
Q 027039 121 DVTGVELMDSL----------------PLVSRADPHNLP--FFDEAFDVAFTA--HLAE---AL--FP---SRFVGEMER 172 (229)
Q Consensus 121 ~v~~vD~s~~~----------------~~~~~~d~~~~~--~~~~~fD~V~~~--~~~~---~~--~~---~~~l~~~~~ 172 (229)
+|+|.|+.++. +.+++.+=+++. .+++++|+++-| ++.. .. .+ ..+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 47788887662 334444333332 223589999988 2221 11 23 567889999
Q ss_pred ccccCcEEEEEeecCCc
Q 027039 173 TVKIGGVCMVLMEECAG 189 (229)
Q Consensus 173 ~LkpgG~lil~~~~~~~ 189 (229)
.|+|||.+.+++....+
T Consensus 81 lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HEEEEEEEEEEE--STC
T ss_pred hhccCCEEEEEEeCCCC
Confidence 99999999988766443
No 284
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.35 E-value=0.6 Score=34.23 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCCCh-hhHHHHhCCCCeEEEecCCCCC----CeEEEcCCCCCCCC-CCceeEEEcccchhhhCHHHHHH
Q 027039 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDSL----PLVSRADPHNLPFF-DEAFDVAFTAHLAEALFPSRFVG 168 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~-~~~~l~~~g~~~v~~vD~s~~~----~~~~~~d~~~~~~~-~~~fD~V~~~~~~~~~~~~~~l~ 168 (229)
...++|.+||.|-=. .+..|++.|+ +++++|+++.. +.+...|+.+.... -...|+|.|-. .|.++..
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppEl~~ 85 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPELQS 85 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccccCcccceEEEccCCCccHHHhhCccceeecC-----CCHHHHH
Confidence 345599999999753 5566778898 99999999873 44888888874321 24567777621 2556666
Q ss_pred HHHhccccCc-EEEEEeecCC
Q 027039 169 EMERTVKIGG-VCMVLMEECA 188 (229)
Q Consensus 169 ~~~~~LkpgG-~lil~~~~~~ 188 (229)
.+.++-+.=| .++ .++-.+
T Consensus 86 ~ildva~aVga~l~-I~pL~G 105 (129)
T COG1255 86 AILDVAKAVGAPLY-IKPLTG 105 (129)
T ss_pred HHHHHHHhhCCCEE-EEecCC
Confidence 6666655433 433 444433
No 285
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.25 E-value=0.17 Score=43.52 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=47.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCC-----CCCCceeEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLP-----FFDEAFDVA 152 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~-----~~~~~fD~V 152 (229)
..+++..++|.-+|.|..+.++++. +.++|+|+|.++.. +.+++++..++. ...+++|.|
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgI 96 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGI 96 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence 4478889999999999999999987 55799999999862 346666665532 123568888
Q ss_pred Ecc
Q 027039 153 FTA 155 (229)
Q Consensus 153 ~~~ 155 (229)
+..
T Consensus 97 l~D 99 (305)
T TIGR00006 97 LVD 99 (305)
T ss_pred EEe
Confidence 875
No 286
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.21 E-value=1.7 Score=36.12 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------CCeEEEcCCCC-CCC-CCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------LPLVSRADPHN-LPF-FDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------~~~~~~~d~~~-~~~-~~~~fD~V~~~~~ 157 (229)
-.|.+||.+|-..- .+++++-. ...+|+.+|+++. .++..+.|+.+ +|- -.++||++++.-.
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 46899999996543 33333332 3459999999976 45577778776 442 2489999999621
Q ss_pred hhhhCHHHHHHHHHhccccCc-EEEEEeecCC--cccHHHHHHHHhcCceeEeeee
Q 027039 158 AEALFPSRFVGEMERTVKIGG-VCMVLMEECA--GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG-~lil~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.-..-..-|+.+....||..| ..++...... .....++++.+-..+++-..-+
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHH
Confidence 110113457788888888766 5555554433 2234567777777777655444
No 287
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.18 E-value=0.18 Score=47.00 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=66.6
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CC-CeEEEecCCCCCCe----EEEcCCCC----CC----CCCCce
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDSLPL----VSRADPHN----LP----FFDEAF 149 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~-~~v~~vD~s~~~~~----~~~~d~~~----~~----~~~~~f 149 (229)
+++.-....++.++..|||+||.+|.+.+..++. |. +-|+|+|+.|..+- ..+.|+.. .+ ...-..
T Consensus 32 LlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 32 LLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred HHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 3333344567899999999999999999888776 43 47999999876221 22233321 11 112244
Q ss_pred eEEEcc---c--chhhhC-------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHH
Q 027039 150 DVAFTA---H--LAEALF-------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (229)
Q Consensus 150 D~V~~~---~--~~~~~~-------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~ 197 (229)
|+|+.. + ..|..+ ....+.-+...|+.||.+ ++..+...+...+..
T Consensus 112 dvVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f--vtkvfrs~dy~~ll~ 169 (780)
T KOG1098|consen 112 DVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF--VTKVFRSEDYNGLLR 169 (780)
T ss_pred cEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc--ccccccCCcchHHHH
Confidence 888764 1 122111 134556667788999994 454444444444433
No 288
>PRK13699 putative methylase; Provisional
Probab=92.99 E-value=0.29 Score=40.32 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=43.1
Q ss_pred EEEcCCCCC--CCCCCceeEEEcc--cch-------h------hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHH
Q 027039 134 VSRADPHNL--PFFDEAFDVAFTA--HLA-------E------AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI 195 (229)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~V~~~--~~~-------~------~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l 195 (229)
+..+|..+. .++++++|+|++. +.. . .. ...+.+.++.|+|||||.+++.... .....+
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---~~~~~~ 80 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---NRVDRF 80 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---ccHHHH
Confidence 445565442 3567788888876 210 0 00 1357889999999999988754432 223445
Q ss_pred HHHHhcCceeEe
Q 027039 196 VELFRTSRFVDA 207 (229)
Q Consensus 196 ~~l~~~~~~~~~ 207 (229)
...+.+.+|.-.
T Consensus 81 ~~al~~~GF~l~ 92 (227)
T PRK13699 81 MAAWKNAGFSVV 92 (227)
T ss_pred HHHHHHCCCEEe
Confidence 566677676533
No 289
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.69 E-value=0.41 Score=39.07 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC---CCCeEEEecCCCC
Q 027039 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDS 130 (229)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---g~~~v~~vD~s~~ 130 (229)
.+++++..+....-+.+-++.|-+||+|++.-.+.-. ....|+|.|++++
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~ 88 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDED 88 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHH
Confidence 3566665554444466778999999999987665433 3568999999987
No 290
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=92.64 E-value=0.3 Score=42.61 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=72.4
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC------------------------CeEEEcCCCCCCC-C
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------------------------PLVSRADPHNLPF-F 145 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~------------------------~~~~~~d~~~~~~-~ 145 (229)
.+..++|.-|.|-=.|||.+....+..|. -|+|.||+-.+ +.+..+|..+.|+ .
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 35669999999999999999999888886 99999998552 3377788887664 3
Q ss_pred CCceeEEEcc---cch----------------------hhh--C-------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 146 DEAFDVAFTA---HLA----------------------EAL--F-------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 146 ~~~fD~V~~~---~~~----------------------~~~--~-------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+..||.|+|. .+- +.. . ...++.-..+.|..||++++..+..
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 5689999997 010 000 0 1356788889999999999887753
No 291
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.52 E-value=0.37 Score=45.98 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHh-------C-C-----CCeEEEecCCCC-------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNS-------I-G-----VADVTGVELMDS------------------------------- 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~-------~-g-----~~~v~~vD~s~~------------------------------- 130 (229)
+..-+|+|+|-|+|.......+ . + .-+++++|..+-
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3457899999999975555431 1 1 237888886441
Q ss_pred ------------CCeEEEcCCCC-CCCCCCceeEEEcccchhhhCH----HHHHHHHHhccccCcEEEEEeecCCcccHH
Q 027039 131 ------------LPLVSRADPHN-LPFFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIK 193 (229)
Q Consensus 131 ------------~~~~~~~d~~~-~~~~~~~fD~V~~~~~~~~~~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~ 193 (229)
.+....+|+.+ ++-.+..||+++...+.-..+| .++++++.+.++|||.+.-.+. -.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------a~ 209 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS------AG 209 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh------HH
Confidence 01144456554 2212356999998755544444 7899999999999999763322 23
Q ss_pred HHHHHHhcCceeEeeeeeecCCe
Q 027039 194 QIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 194 ~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
.+..-+...+|. ++...+.|.+
T Consensus 210 ~vr~~l~~~GF~-v~~~~~~g~k 231 (662)
T PRK01747 210 FVRRGLQEAGFT-VRKVKGFGRK 231 (662)
T ss_pred HHHHHHHHcCCe-eeecCCCchh
Confidence 466667777774 3355555555
No 292
>PRK11524 putative methyltransferase; Provisional
Probab=92.46 E-value=0.16 Score=43.29 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=37.7
Q ss_pred CeEEEcCCCCC--CCCCCceeEEEcc--cch--------------hhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 132 PLVSRADPHNL--PFFDEAFDVAFTA--HLA--------------EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 132 ~~~~~~d~~~~--~~~~~~fD~V~~~--~~~--------------~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
-.++++|..+. .+++++||+|+++ +.. .+. ...+.+.++.++|||||.+++....
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 34666776663 3567889999986 211 011 1357889999999999999976544
No 293
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.42 E-value=0.79 Score=40.28 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=59.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCC-----CCeEEEecCCCCC---------------CeEEEcCCCCCC---------
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIG-----VADVTGVELMDSL---------------PLVSRADPHNLP--------- 143 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g-----~~~v~~vD~s~~~---------------~~~~~~d~~~~~--------- 143 (229)
.++|+.+|||+++-+|.-+..+.+.. .+.|.+=|.++.. +.+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 45899999999999999998887662 2368888888761 112233332222
Q ss_pred CCCCceeEEEcc-------------cchhh-------h----CHHHHHHHHHhccccCcEEEEEe
Q 027039 144 FFDEAFDVAFTA-------------HLAEA-------L----FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 144 ~~~~~fD~V~~~-------------~~~~~-------~----~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+...||-|++. .+... . -...++.+-.+.||+||.++-.+
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 233579999875 11110 0 01467888999999999966443
No 294
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.35 E-value=1 Score=38.46 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=56.5
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC--------eEEEcCCCCC------CCCCCceeEEE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP--------LVSRADPHNL------PFFDEAFDVAF 153 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~--------~~~~~d~~~~------~~~~~~fD~V~ 153 (229)
....++++.+||..|+|. |..+..++.. |. +|++++.++... ..+..+-... ....+.+|+++
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 344568889999988764 7777777776 76 788998876522 1111111110 12345789888
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...- ....++++.+.|+++|.++..
T Consensus 238 d~~g-----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 238 DFVG-----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ECCC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 5321 234678889999999998855
No 295
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=0.13 Score=39.52 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
++..+.+|+|+|.|....+.+..|....+|+++++-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpw 106 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPW 106 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHH
Confidence 566899999999999999988888668999999876
No 296
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.99 E-value=0.64 Score=34.67 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=37.4
Q ss_pred CCCCeEEEEcCCCCh-hhHHHHhCCCCeEEEecCCCC----CCeEEEcCCCCCCCC-CCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDS----LPLVSRADPHNLPFF-DEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~-~~~~l~~~g~~~v~~vD~s~~----~~~~~~~d~~~~~~~-~~~fD~V~~~~ 156 (229)
....+|+|||-|.-. .+..|.+.|+ +|+++|+.+. .+.++..|+.+.... -...|+|.|..
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeC
Confidence 455699999999864 5555666797 9999999998 677888888874321 24789998843
No 297
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.92 E-value=0.46 Score=40.68 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEEEc----CCCCCCCCCCceeEEEcccchhhhCHHHHHH
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVSRA----DPHNLPFFDEAFDVAFTAHLAEALFPSRFVG 168 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~~~----d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~ 168 (229)
.++.++|-+|||. |..+..+++. |...+.++|.++...+.... |..+. ....+|+|+-..- -...+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G-----~~~~~~ 215 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG-----DPSLID 215 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC-----CHHHHH
Confidence 4577899999875 7777777766 87668888877654332111 11110 1246888885321 123567
Q ss_pred HHHhccccCcEEEEEe
Q 027039 169 EMERTVKIGGVCMVLM 184 (229)
Q Consensus 169 ~~~~~LkpgG~lil~~ 184 (229)
.+.+.+++||+++++-
T Consensus 216 ~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 216 TLVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHHhhhcCcEEEEEe
Confidence 7888999999988543
No 298
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.66 E-value=1.6 Score=35.56 Aligned_cols=91 Identities=19% Similarity=0.130 Sum_probs=56.2
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC-------CCCCceeEEE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDVAF 153 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~V~ 153 (229)
....+.++.+||..|+|+ |.....++.. |. ++++++.++...+. ...+..+.. ...+.+|+++
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 334457899999999996 6666666665 74 89999887542211 011111111 1235789988
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
...-. ...+..+.+.++++|.++.....
T Consensus 207 ~~~~~-----~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 207 DAVGG-----PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred ECCCC-----HHHHHHHHHhcccCCEEEEEccC
Confidence 64211 14567778889999998865544
No 299
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.31 E-value=0.19 Score=41.11 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCC----CCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHN----LPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~----~~~~~~~fD~V~~~ 155 (229)
....|+|.-||.|..+...+..+. .|+++|+++. .+.|++||+.+ +.+....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 567899999999999999999976 9999999987 45599999876 34555668888876
No 300
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=90.96 E-value=0.33 Score=41.20 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=45.4
Q ss_pred eEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------eEEEcCCCCCCCC--CCceeEEEcc
Q 027039 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFF--DEAFDVAFTA 155 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------~~~~~d~~~~~~~--~~~fD~V~~~ 155 (229)
+++|+-||.|.....+.+.|+..+.++|+++... .++.+|+.++... ...+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeC
Confidence 6899999999999999888987889999998622 2567788776432 3579999986
No 301
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.85 E-value=0.67 Score=40.27 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHh--CCCCeEEEecCCCCCCeEEE-cCCC-CC-CCCC-CceeEEEcccchhhhCHHHH
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNS--IGVADVTGVELMDSLPLVSR-ADPH-NL-PFFD-EAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~--~g~~~v~~vD~s~~~~~~~~-~d~~-~~-~~~~-~~fD~V~~~~~~~~~~~~~~ 166 (229)
.+++.+||-+|||. |..+..++. .|..+|+++|.+++..++.. .+.. .. .+.+ ..+|+|+-.. .. ..-...
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~-G~-~~~~~~ 238 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECV-GG-RGSQSA 238 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECC-CC-CccHHH
Confidence 47899999999875 556555554 25558999998876443211 1110 00 1111 2478887421 11 002346
Q ss_pred HHHHHhccccCcEEEEE
Q 027039 167 VGEMERTVKIGGVCMVL 183 (229)
Q Consensus 167 l~~~~~~LkpgG~lil~ 183 (229)
+.+..+.+++||+++++
T Consensus 239 ~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 239 INQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHhCcCCcEEEEE
Confidence 78888999999998854
No 302
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.63 E-value=1.4 Score=37.30 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=58.0
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhhC
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~ 162 (229)
...+.+++...|+|+-+|.++-.|.+++- .|+++|.-+- .++....|...........|-.+|.-+..
T Consensus 206 ~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVEk--- 281 (358)
T COG2933 206 DKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVEK--- 281 (358)
T ss_pred hhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhcC---
Confidence 34458999999999999999999999976 9999997654 33455556555432356788888864444
Q ss_pred HHHHHHHHHhcccc
Q 027039 163 PSRFVGEMERTVKI 176 (229)
Q Consensus 163 ~~~~l~~~~~~Lkp 176 (229)
|.+.-+.|...|..
T Consensus 282 P~rv~~li~~Wl~n 295 (358)
T COG2933 282 PARVAALIAKWLVN 295 (358)
T ss_pred cHHHHHHHHHHHHc
Confidence 65555555555544
No 303
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=89.65 E-value=12 Score=31.71 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHh-cccCCCCCeEEEEcCCCCh---hh-HHHHhC-CC-CeEEEecCCCC---CCeEEEcCCCCCCCCCC
Q 027039 78 VTSYAHFFKHLQG-KSLLFNHSKVLCVSAGAGH---EV-MAFNSI-GV-ADVTGVELMDS---LPLVSRADPHNLPFFDE 147 (229)
Q Consensus 78 ~~~~~~~~~~l~~-~~~~~~~~~vLDiG~G~G~---~~-~~l~~~-g~-~~v~~vD~s~~---~~~~~~~d~~~~~~~~~ 147 (229)
+.-|.++.+.+.. ......+++||.+|+|+-. .+ .-|.+. |. .-++-.|+.+- ....+.+|-+.... +.
T Consensus 42 V~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~-~~ 120 (299)
T PF06460_consen 42 VAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP-PD 120 (299)
T ss_dssp HHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE-SS
T ss_pred HHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCC-CC
Confidence 4455666665532 2234678999999999832 22 334444 43 24555565543 44466788777654 57
Q ss_pred ceeEEEcccc-------hhhh-CH----HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 148 AFDVAFTAHL-------AEAL-FP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 148 ~fD~V~~~~~-------~~~~-~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
+||+|++.-. .... .. .-+..-+...|+-||.+++=+.+..- ..++.++.+....-..-.-....|
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw--~~~Lyel~~~F~~wt~FcT~VNtS 198 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW--NAQLYELMGYFSWWTCFCTAVNTS 198 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS----HHHHHHHTTEEEEEEEEEGGGTT
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc--cHHHHHHHhhcccEEEEecccCcc
Confidence 9999999622 1111 12 33456667789999998887776443 366778877666665555444444
Q ss_pred e
Q 027039 216 N 216 (229)
Q Consensus 216 ~ 216 (229)
+
T Consensus 199 S 199 (299)
T PF06460_consen 199 S 199 (299)
T ss_dssp S
T ss_pred c
Confidence 4
No 304
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.41 E-value=2.1 Score=37.36 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=53.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----C-CCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----P-FFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~-~~~~~fD~V~ 153 (229)
...++++.+||-.|+|. |..+..+++. |..+|+++|.++...+ ++...-.+. . .....+|+|+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 34568899999998765 5666666666 7756999988765322 111111110 0 1123588887
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
-.. . -...+.+..+.+++||+++++
T Consensus 251 d~~-g----~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 DAV-G----RPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ECC-C----CHHHHHHHHHHhccCCEEEEE
Confidence 521 1 123566778899999998754
No 305
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.32 E-value=1.7 Score=40.08 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C----CCeEEEecCCCCC----------------CeEEEcCCCCCC-C----CCCc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G----VADVTGVELMDSL----------------PLVSRADPHNLP-F----FDEA 148 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g----~~~v~~vD~s~~~----------------~~~~~~d~~~~~-~----~~~~ 148 (229)
.+..+|.|-.||+|.......+. + ...++|.|+++.. ....++|...-| + ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 56779999999999766665443 2 2478999987661 123334433333 2 3367
Q ss_pred eeEEEcc--cc--hh----------------h-h----CH-HHHHHHHHhccccCcEEEEEeec
Q 027039 149 FDVAFTA--HL--AE----------------A-L----FP-SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 149 fD~V~~~--~~--~~----------------~-~----~~-~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
||+|++| +. .+ . . .. ..+++.+...|+|||+..+++..
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 9999998 10 00 0 0 01 56889999999999987777665
No 306
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.31 E-value=1.8 Score=39.17 Aligned_cols=122 Identities=17% Similarity=0.111 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHh-CCCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~-~g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
-.+.+|+=+|+|. |......+. .|. +|+.+|.++.... +...+..+. -...|+|+... . ...+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~v~~l~ea---l~~aDVVI~aT--G---~~~v 280 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFRVMTMEEA---AELGDIFVTAT--G---NKDV 280 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCEecCHHHH---HhCCCEEEECC--C---CHHH
Confidence 4789999999986 433333333 377 8999998876321 111111111 13679988632 1 1234
Q ss_pred HH-HHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc--eeEeeeeeecCCeeEEEEEEecc
Q 027039 167 VG-EMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR--FVDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 167 l~-~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
+. +..+.+|+|+.++..-....+-+...+.+.-...+ -..+..++.++.+ +++++-.++
T Consensus 281 I~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~-~i~lLa~Gr 342 (425)
T PRK05476 281 ITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGK-RIILLAEGR 342 (425)
T ss_pred HHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCCC-EEEEEeCCc
Confidence 54 67889999998774444444445555554321222 1224445555544 566665544
No 307
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.03 E-value=2 Score=37.67 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=54.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----CCCCCceeEEEc
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----PFFDEAFDVAFT 154 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~~~~~~fD~V~~ 154 (229)
...++++.+||=.|+|. |..+..+++. |...|+++|.++...+ ++..+-.+. ....+.+|+|+-
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 34568899999999865 5666666666 7657999998765322 111111110 011235888885
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.. . ....+....+.+++||+++++
T Consensus 266 ~~-G----~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 266 MA-G----SVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CC-C----ChHHHHHHHHHHhcCCEEEEE
Confidence 21 1 124567778899999998754
No 308
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.75 E-value=0.88 Score=38.32 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-C-----CCeEEEecCCCC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-----VADVTGVELMDS 130 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-----~~~v~~vD~s~~ 130 (229)
++++.++...+.++++..++|+|||.|.++..++.. + ...++.||-...
T Consensus 4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 567777777888899999999999999999999876 2 347888887644
No 309
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=88.64 E-value=3.6 Score=32.12 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----CC-eEEEcCCCC---CC-CCCCceeEEEccc-chhhhCHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----LP-LVSRADPHN---LP-FFDEAFDVAFTAH-LAEALFPS 164 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----~~-~~~~~d~~~---~~-~~~~~fD~V~~~~-~~~~~~~~ 164 (229)
.++.+|+.|||-+-.....-...+..++...|++.. .- .|+.-|.++ +| .-.++||+|++.- +...--..
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~ 103 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLT 103 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHH
Confidence 467899999999766554432234458888998865 12 377667665 22 1157999999962 11100113
Q ss_pred HHHHHHHhccccCcEEEEEeec
Q 027039 165 RFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 165 ~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+....+..++|+++++++++++
T Consensus 104 k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 104 KTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred HHHHHHHHHhCccceEEEecHH
Confidence 3445556667889999988876
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.47 E-value=0.82 Score=42.26 Aligned_cols=88 Identities=22% Similarity=0.259 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCCCC-----------------------
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADPHN----------------------- 141 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~~~----------------------- 141 (229)
.++.+++=+|+|. |..+...+.. |. .|+++|.++.. .+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4578999999997 6666666665 76 79999998762 2233333211
Q ss_pred CCCCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 142 LPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 142 ~~~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
++-.-..+|+|+........ .|.-+.+++.+.+|||+.++=+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 01012469999876433333 4545678889999999987744
No 311
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.06 E-value=0.98 Score=39.32 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=51.8
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCC---CCC--------CeEEEcCCCCCC----CCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELM---DSL--------PLVSRADPHNLP----FFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s---~~~--------~~~~~~d~~~~~----~~~~~fD~V~~~~ 156 (229)
.+++.+||-+|+|. |..+..+++. |. ++++++.+ +.. ...+ +..+.. ...+.+|+|+-..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc
Confidence 46789999999875 6777777776 77 89999863 321 1221 211111 0124588888632
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
- ....+.+..+.+++||+++++
T Consensus 247 g-----~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 247 G-----VPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred C-----CHHHHHHHHHHccCCcEEEEE
Confidence 1 123677888999999998744
No 312
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.62 E-value=4.1 Score=36.63 Aligned_cols=123 Identities=18% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHHH
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~ 165 (229)
...+.+|+-+|+|. |......+.. |. +|+++|.++.... +...+.++. . ...|+|++.. . ...
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~v~~leea-l--~~aDVVItaT--G---~~~ 262 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFRVMTMEEA-A--KIGDIFITAT--G---NKD 262 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCEeCCHHHH-H--hcCCEEEECC--C---CHH
Confidence 35789999999997 5544444444 76 8999988775321 111121111 1 3468887631 1 233
Q ss_pred HH-HHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee--EeeeeeecCCeeEEEEEEecc
Q 027039 166 FV-GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV--DAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 166 ~l-~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 226 (229)
++ .+....+|+|+.++..-....+-+...+.+.....+.+ .+..+..++.+ +++++-.++
T Consensus 263 vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g~-~i~ll~~Gr 325 (406)
T TIGR00936 263 VIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDGR-RIYLLAEGR 325 (406)
T ss_pred HHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCCC-EEEEEeCCc
Confidence 44 35778899999877444433335666776655433322 23334454433 555555444
No 313
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.53 E-value=1.2 Score=39.47 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=64.8
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------------------CeEEEcCCCCCC
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------------------PLVSRADPHNLP 143 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------------------~~~~~~d~~~~~ 143 (229)
.+...++++..-.|+|+|-|.....++.. ++..-.|+++...+ ++.+++++.+..
T Consensus 185 ~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~ 264 (419)
T KOG3924|consen 185 VDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPK 264 (419)
T ss_pred HHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHH
Confidence 34446789999999999999999888877 67778888888762 335666655532
Q ss_pred ---CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEE
Q 027039 144 ---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 144 ---~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~li 181 (229)
.-....++|++|++.-..+...=+.++..-+++|-+++
T Consensus 265 ~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 265 RVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred HHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEe
Confidence 22457899999865442222222347888899999855
No 314
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=86.44 E-value=6.2 Score=33.85 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=61.0
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCC---------CeEEE-cCCCCCC------CCCCceeEEEcccchh
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSL---------PLVSR-ADPHNLP------FFDEAFDVAFTAHLAE 159 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~---------~~~~~-~d~~~~~------~~~~~fD~V~~~~~~~ 159 (229)
++|+=+|+|. |.++..|++.|. +|+.++-+.+. +.... ++....+ -+.+.||+|+... .
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v--K 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC--K 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC--C
Confidence 5799999997 567777877776 88888876421 11111 1111111 1235799998742 2
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
..+..++++.+...+.++..++.+...- ...+.+.+.|...+
T Consensus 80 ~~~~~~al~~l~~~l~~~t~vv~lQNGv--~~~e~l~~~~~~~~ 121 (305)
T PRK05708 80 AYDAEPAVASLAHRLAPGAELLLLQNGL--GSQDAVAARVPHAR 121 (305)
T ss_pred HHhHHHHHHHHHhhCCCCCEEEEEeCCC--CCHHHHHHhCCCCc
Confidence 2235678889999999998766444332 23445666666443
No 315
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.18 E-value=2.9 Score=36.06 Aligned_cols=84 Identities=17% Similarity=0.069 Sum_probs=51.9
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCCCCCCceeEEEcccchhhhC
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLPFFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~~~~~~fD~V~~~~~~~~~~ 162 (229)
..++++.+||-.|+|. |..+..+++. |. ++++++.+++..+. ...+..+. ..+.+|+++-... .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~--~~~~~d~~i~~~~----~ 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYDT--PPEPLDAAILFAP----A 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccccc--CcccceEEEECCC----c
Confidence 4568899999999764 5555666665 76 79999887662220 01111111 1235786653211 1
Q ss_pred HHHHHHHHHhccccCcEEEEE
Q 027039 163 PSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~ 183 (229)
+ ..+....+.|++||+++++
T Consensus 234 ~-~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 G-GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred H-HHHHHHHHhhCCCcEEEEE
Confidence 2 3678888999999998754
No 316
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=85.96 E-value=3.4 Score=35.44 Aligned_cols=83 Identities=24% Similarity=0.291 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcC---CCCCCCCCCceeEEEcccchhhh
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRAD---PHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d---~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
++.+||-.|+|. |..+..+++. |...+++++.++...+ ++..+ ........+.+|+++...-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 788999988775 6666666665 7657889887654211 11111 1111111235899886321
Q ss_pred CHHHHHHHHHhccccCcEEEEE
Q 027039 162 FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....++++.+.|+++|+++.+
T Consensus 241 -~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 241 -APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred -CHHHHHHHHHHHhcCCEEEEE
Confidence 123577888999999998854
No 317
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=85.91 E-value=2.5 Score=32.45 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCC-CC---CCCCceeEEEcccchhhh-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHN-LP---FFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~-~~---~~~~~fD~V~~~~~~~~~- 161 (229)
...-|||+|=|.|..--.|.+. +..+|+.+|-.-. .-.++++|+.+ ++ +...+.-++.+. +..+.
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD-~G~g~~ 106 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHAD-IGTGDK 106 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE-----S-H
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEee-cCCCCc
Confidence 4578999999999999999998 7779999987533 33488888876 33 223344444443 11111
Q ss_pred --C---HHHHHHHHHhccccCcEEE
Q 027039 162 --F---PSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 162 --~---~~~~l~~~~~~LkpgG~li 181 (229)
+ ...+-.-+..+|.|||.++
T Consensus 107 ~~d~a~a~~lspli~~~la~gGi~v 131 (160)
T PF12692_consen 107 EKDDATAAWLSPLIAPVLAPGGIMV 131 (160)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred chhHHHHHhhhHHHHHHhcCCcEEE
Confidence 1 1222345667899999954
No 318
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=85.40 E-value=5.6 Score=34.18 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCC------CCeEEE--cCCC-------CCCCCCCceeEEEcccch
Q 027039 96 NHSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDS------LPLVSR--ADPH-------NLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 96 ~~~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~------~~~~~~--~d~~-------~~~~~~~~fD~V~~~~~~ 158 (229)
..++|+=||+|. |.++..|++.|+ +|+.+..++. .+.... ++.. ..+-....+|+|+..-
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-- 80 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL-- 80 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEe--
Confidence 446899999996 567777777776 7777766542 111111 1100 0011135789998741
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
......++++.+...+++++.++..... -...+.+.+.|...+.+
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG--~~~~e~l~~~~~~~~v~ 125 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNG--LGVEEQLREILPAEHLL 125 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCC--CCcHHHHHHHCCCCcEE
Confidence 1112456778888889999885543332 22345566777655543
No 319
>PLN02740 Alcohol dehydrogenase-like
Probab=85.29 E-value=4.5 Score=35.66 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=53.4
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCC--C-----CCCCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHN--L-----PFFDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~--~-----~~~~~~fD~V 152 (229)
...++++.+||=+|+|. |..+..+++. |...|+++|.+++..+ ++...-.+ + ....+.+|+|
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvv 272 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYS 272 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEE
Confidence 34568899999999865 5666666666 7657999998776322 22111100 0 0112258888
Q ss_pred EcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+-..- ....+....+.+++| |+++++
T Consensus 273 id~~G-----~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 273 FECAG-----NVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred EECCC-----ChHHHHHHHHhhhcCCCEEEEE
Confidence 75321 124566777788886 987643
No 320
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.59 E-value=2.7 Score=34.86 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCe------------------EEEcCCCCC----CCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL------------------VSRADPHNL----PFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~------------------~~~~d~~~~----~~~~~~fD 150 (229)
.++.++||||.|.-..--.+.-. |+ +.+|.|+++..++ ..+.|-..+ --.++.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 46778999999987544333333 66 9999999977222 222332221 12267999
Q ss_pred EEEcc
Q 027039 151 VAFTA 155 (229)
Q Consensus 151 ~V~~~ 155 (229)
++.||
T Consensus 156 ~tlCN 160 (292)
T COG3129 156 ATLCN 160 (292)
T ss_pred eEecC
Confidence 99999
No 321
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=84.31 E-value=0.86 Score=40.54 Aligned_cols=88 Identities=26% Similarity=0.271 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC-----------------CeEEEcCCCCCC-CCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-----------------PLVSRADPHNLP-FFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~-~~~~~fD~V~~ 154 (229)
..+.++||.=+|+|.=++..+.. +...|++-|++++. +.+.+.|+..+- ...+.||+|=.
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 34579999999999988888766 56799999999872 234455555431 24678999876
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.-+.. |..++..+.+.+|.||.+.+...
T Consensus 128 DPfGS---p~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 DPFGS---PAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp --SS-----HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCCCC---ccHhHHHHHHHhhcCCEEEEecc
Confidence 54444 88999999999999999885543
No 322
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=83.81 E-value=1.7 Score=36.57 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=51.5
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC------CCCCceeEEEcccch
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP------FFDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~------~~~~~fD~V~~~~~~ 158 (229)
..++.+||=+|+|+ |..+..+++. |...|+++|.++...++ ...+..+.. .....+|+|+-.. .
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~-G 196 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS-G 196 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC-C
Confidence 35788999998864 5565666665 77569998877652221 001111100 0123578877521 1
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
....+++..+.++|+|+++++-
T Consensus 197 ----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 197 ----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ----ChHHHHHHHHHhcCCCEEEEec
Confidence 1346777889999999988554
No 323
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.81 E-value=2.5 Score=36.07 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=53.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC----CCCCCceeEEEcc
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL----PFFDEAFDVAFTA 155 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~----~~~~~~fD~V~~~ 155 (229)
...+.++.+||-+|+|. |..+..+++. |...+++++.+++..+ ++..+-.+. ....+.+|+++..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 34567889999998653 5555556665 7644888877654221 111111110 1123568999863
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.- ....+.++.+.|+++|+++.+
T Consensus 234 ~~-----~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 234 TG-----VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CC-----ChHHHHHHHHHHhcCCEEEEE
Confidence 21 134677788999999998754
No 324
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.30 E-value=0.53 Score=42.86 Aligned_cols=86 Identities=23% Similarity=0.327 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCe----------------EEEcCCCCC----CCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL----------------VSRADPHNL----PFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~----------------~~~~d~~~~----~~~~~~fD~V 152 (229)
.++.+|||.=|++|.-++..+.. +..+|++-|.++..+. ..++|+..+ +-.+..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45678999999999999998877 7789999999988443 333443321 2235789998
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
-..-+.. +..++..+.+.++.||.+.+.
T Consensus 188 DLDPyGs---~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPYGS---PSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCCCC---ccHHHHHHHHHhhcCCEEEEE
Confidence 7644433 788999999999999998754
No 325
>PLN02494 adenosylhomocysteinase
Probab=83.28 E-value=3.7 Score=37.60 Aligned_cols=123 Identities=10% Similarity=0.014 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHh-CCCCeEEEecCCCCCC-e-----EEEcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLP-L-----VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~-~g~~~v~~vD~s~~~~-~-----~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
-.+.+|+-+|+|. |......+. .|. +|+++|.++... . +...+..+. -...|+|+...- ...-+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv~leEa---l~~ADVVI~tTG----t~~vI 323 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVLTLEDV---VSEADIFVTTTG----NKDII 323 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeeccHHHH---HhhCCEEEECCC----Cccch
Confidence 5689999999996 443333333 377 899999887521 1 111111111 135798886311 11222
Q ss_pred HHHHHhccccCcEEEEEeecCCcccHHHHHHH--Hhc-CceeEeeeeeecC-CeeEEEEEEecc
Q 027039 167 VGEMERTVKIGGVCMVLMEECAGREIKQIVEL--FRT-SRFVDAANVTVNG-SNMTRILMRRTR 226 (229)
Q Consensus 167 l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l--~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 226 (229)
..+..+.+|+||.++-+-.....-+...|.+. .+. .-...+..++.++ .+ +++++--++
T Consensus 324 ~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~~d~g~-~i~ll~eGr 386 (477)
T PLN02494 324 MVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTGS-GIIVLAEGR 386 (477)
T ss_pred HHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCceEEEcCCCCC-EEEEEeCCc
Confidence 36777889999998844443345556666655 221 1113333344443 33 566655554
No 326
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=82.64 E-value=2.2 Score=38.91 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe-------EEEcCCCC------C---------CCCCCceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------VSRADPHN------L---------PFFDEAFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------~~~~d~~~------~---------~~~~~~fD~ 151 (229)
..+.++|.+|-|+|.+...+... +...++++++.+.+.+ |.+.|... + .-++..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 56778999999999999888766 7669999999998554 22222100 0 124568999
Q ss_pred EEcc--cc-hhhh--CH-----HHHHHHHHhccccCcEEEEEeecCCc
Q 027039 152 AFTA--HL-AEAL--FP-----SRFVGEMERTVKIGGVCMVLMEECAG 189 (229)
Q Consensus 152 V~~~--~~-~~~~--~~-----~~~l~~~~~~LkpgG~lil~~~~~~~ 189 (229)
++.. .- .+.. .| ..++..+...|.|.|.+++..-..+.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 8864 11 2222 22 56778889999999999988777553
No 327
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.61 E-value=4.6 Score=35.35 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=49.9
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe----------EEEc-CCCCCCCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL----------VSRA-DPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~----------~~~~-d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..+++.+||-.|+|. |..+..+++. |. ++++++.++.... ++.. +...+.-..+.+|+|+-..-
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-- 256 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-- 256 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC--
Confidence 346788999999875 6666667766 76 7777776654211 1110 00011000124788774211
Q ss_pred hhCHHHHHHHHHhccccCcEEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+++..+.+++||+++.+
T Consensus 257 ---~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 ---AVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred ---CHHHHHHHHHHhcCCcEEEEe
Confidence 123567788999999998854
No 328
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=82.54 E-value=5.5 Score=34.18 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=51.8
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCC---C-C-CCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHN---L-P-FFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~---~-~-~~~~~fD~V~~~ 155 (229)
..++++.+||=+|+|. |..+..+++. |..+|+++|.+++..+ ++...-.+ + . .....+|+|+-.
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 3457899999998764 5555556665 7744999987765221 11111100 0 0 112368888853
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.- ....+....+.|+++|+++++
T Consensus 239 ~g-----~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 239 SG-----NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 21 123456777889999998754
No 329
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=82.15 E-value=2.2 Score=37.56 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe---------------EEEcCCCCCCCC-CCceeEEEcccchh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLPFF-DEAFDVAFTAHLAE 159 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~-~~~fD~V~~~~~~~ 159 (229)
..+|+|-=+|+|.=++.++.. +..+++.-|+|+..++ .+..|+..+-.. ...||+|=..-+.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFG- 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFG- 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCC-
Confidence 789999999999999998877 5558999999998433 333444432211 2567776543333
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEee
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.|..++..+.+.+|.||.+.+...
T Consensus 132 --SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 132 --SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred --CCchHHHHHHHHhhcCCEEEEEec
Confidence 378899999999999999875543
No 330
>PTZ00357 methyltransferase; Provisional
Probab=82.00 E-value=3.6 Score=39.45 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=55.3
Q ss_pred CeEEEEcCCCChhhHHHHhC----CC-CeEEEecCCCC----------------C--------CeEEEcCCCCCCCCC--
Q 027039 98 SKVLCVSAGAGHEVMAFNSI----GV-ADVTGVELMDS----------------L--------PLVSRADPHNLPFFD-- 146 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~----g~-~~v~~vD~s~~----------------~--------~~~~~~d~~~~~~~~-- 146 (229)
..|+-+|+|-|.+.....+. +. -+|+++|-++. . ++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999876554322 32 28999999954 1 467888998874321
Q ss_pred ---------CceeEEEcccchhhh-C---HHHHHHHHHhcccc----CcE
Q 027039 147 ---------EAFDVAFTAHLAEAL-F---PSRFVGEMERTVKI----GGV 179 (229)
Q Consensus 147 ---------~~fD~V~~~~~~~~~-~---~~~~l~~~~~~Lkp----gG~ 179 (229)
+++|+||+- ++..+ + -.+.|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 379999983 33222 2 25788888888886 775
No 331
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=81.78 E-value=3.5 Score=36.66 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~ 130 (229)
.+-..++|+|+|.|+++..++-. |. .|.+||-+..
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~ 187 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQR 187 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchH
Confidence 45678999999999999999887 66 9999999855
No 332
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.49 E-value=1.4 Score=32.10 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=47.4
Q ss_pred CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----C-CCCCceeEEEcccchhhhCHHHHHHHH
Q 027039 107 AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----P-FFDEAFDVAFTAHLAEALFPSRFVGEM 170 (229)
Q Consensus 107 ~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~-~~~~~fD~V~~~~~~~~~~~~~~l~~~ 170 (229)
-|..+..+++. | .+|+++|.++...+ ++..+-.++ . ..+..+|+|+-..- -...++..
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~~~~~~~ 75 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----SGDTLQEA 75 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----SHHHHHHH
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----cHHHHHHH
Confidence 35667777766 7 59999998876222 222222211 1 22357999885321 14678889
Q ss_pred HhccccCcEEEEEeecC
Q 027039 171 ERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 171 ~~~LkpgG~lil~~~~~ 187 (229)
...++|+|+++++-...
T Consensus 76 ~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 76 IKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHEEEEEEEEEESSTS
T ss_pred HHHhccCCEEEEEEccC
Confidence 99999999988665544
No 333
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.33 E-value=2.6 Score=37.94 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHHH
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~ 165 (229)
.-++.+|+=+|+|. |......+.. |. +|+.+|.++.... +...+..+. . ..+|+|+...- .+ .
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~~~~e~-v--~~aDVVI~atG----~~-~ 269 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVMTMEEA-V--KEGDIFVTTTG----NK-D 269 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEccHHHH-H--cCCCEEEECCC----CH-H
Confidence 35799999999997 6555555544 87 8999999876322 111111111 1 35798886311 22 3
Q ss_pred HHH-HHHhccccCcEEEEEe
Q 027039 166 FVG-EMERTVKIGGVCMVLM 184 (229)
Q Consensus 166 ~l~-~~~~~LkpgG~lil~~ 184 (229)
.+. +..+.+|+||.++.+-
T Consensus 270 ~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 270 IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHHhcCCCCcEEEEeC
Confidence 444 4588999999987443
No 334
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=81.09 E-value=1.5 Score=35.19 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
..++..|||.=||+|..+.+..+.|- +.+|+|+++.
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~ 224 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEE 224 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHH
Confidence 47899999999999999999888876 8999999865
No 335
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=80.64 E-value=0.79 Score=39.29 Aligned_cols=89 Identities=15% Similarity=0.047 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCCCChhhH-HHHhCCCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVM-AFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~-~l~~~g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.-.+..|.|+=+|-|+++. .+...|...|.++|.+|-.++ .+.+|-... -++...|-|...-
T Consensus 192 sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLGL 270 (351)
T KOG1227|consen 192 SCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLGL 270 (351)
T ss_pred ccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeecc
Confidence 3456889999999999999 666778889999999987433 444454443 3467777777643
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.. -++-.--+..+|||.|--++++.+
T Consensus 271 lPS---se~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 271 LPS---SEQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred ccc---cccchHHHHHHhhhcCCcEEEEec
Confidence 222 233344567889997764557665
No 336
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=80.45 E-value=5.4 Score=34.73 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=54.1
Q ss_pred cccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCCe----------EEEcCCC-CC-----CCCCCceeE
Q 027039 91 KSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLPL----------VSRADPH-NL-----PFFDEAFDV 151 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------~~~~d~~-~~-----~~~~~~fD~ 151 (229)
...++++.+||=.|+ | .|..+..+++. |. ++++++.++...+ ++..+-. +. ....+.+|+
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 345688999999998 3 47788888777 76 7888887654221 1111100 11 011235888
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+-.. . ...+....+.+++||+++++
T Consensus 232 v~d~v-G-----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 232 YFDNV-G-----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEECC-C-----HHHHHHHHHHhccCCEEEEE
Confidence 87532 1 23567788999999998754
No 337
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.28 E-value=8.3 Score=27.46 Aligned_cols=80 Identities=13% Similarity=-0.004 Sum_probs=49.2
Q ss_pred CCCChhhHHHHhC---CCCeEEEecCCCC--------CCeEEEcCCCCCC----CCCCceeEEEcccchhhhCHHHHHHH
Q 027039 105 AGAGHEVMAFNSI---GVADVTGVELMDS--------LPLVSRADPHNLP----FFDEAFDVAFTAHLAEALFPSRFVGE 169 (229)
Q Consensus 105 ~G~G~~~~~l~~~---g~~~v~~vD~s~~--------~~~~~~~d~~~~~----~~~~~fD~V~~~~~~~~~~~~~~l~~ 169 (229)
||.|..+..+++. +..+++.+|.+++ ...++.+|..+.. ..-...|.+++..-.. ..-..+..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d--~~n~~~~~ 81 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD--EENLLIAL 81 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH--HHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH--HHHHHHHH
Confidence 5667787777655 3348999999975 4668899988742 2235788877742111 12223445
Q ss_pred HHhccccCcEEEEEeec
Q 027039 170 MERTVKIGGVCMVLMEE 186 (229)
Q Consensus 170 ~~~~LkpgG~lil~~~~ 186 (229)
..+.+.|..++++.+..
T Consensus 82 ~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 82 LARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHTTTSEEEEEESS
T ss_pred HHHHHCCCCeEEEEECC
Confidence 55677788887755554
No 338
>PLN02827 Alcohol dehydrogenase-like
Probab=80.01 E-value=3.5 Score=36.42 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=51.5
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCC--C-------CCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNL--P-------FFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~--~-------~~~~~fD~V~ 153 (229)
..++++.+||-.|+|. |..+..+++. |...++++|.++...++ ...+..+. + ...+.+|+|+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 3467899999998765 5666666665 77578899876652210 00111110 0 1122588887
Q ss_pred cccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
-..- ....+....+.+++| |+++++
T Consensus 269 d~~G-----~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 269 ECVG-----DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred ECCC-----ChHHHHHHHHhhccCCCEEEEE
Confidence 5211 123466778889998 998753
No 339
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=79.66 E-value=4.6 Score=33.61 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-C--------CCeEEEecCCCC
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-G--------VADVTGVELMDS 130 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g--------~~~v~~vD~s~~ 130 (229)
...+|+|+|+|+|.++..+... . ..+++-+|+|+.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 3479999999999998887543 1 248999999988
No 340
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.53 E-value=13 Score=30.67 Aligned_cols=60 Identities=17% Similarity=0.029 Sum_probs=42.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC----CCCeEEEecCCCC---------CCeEEEcCCCCC-----------CCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDS---------LPLVSRADPHNL-----------PFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~----g~~~v~~vD~s~~---------~~~~~~~d~~~~-----------~~~~~~fD 150 (229)
.....||-.||..|-.+.+++.. |+ .|+++--+-+ .+.....|+.+- .+++++.|
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld 83 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLD 83 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceE
Confidence 46678999999999888887654 87 8998866654 222444454331 35789999
Q ss_pred EEEcc
Q 027039 151 VAFTA 155 (229)
Q Consensus 151 ~V~~~ 155 (229)
+.+.|
T Consensus 84 ~L~NN 88 (289)
T KOG1209|consen 84 LLYNN 88 (289)
T ss_pred EEEcC
Confidence 99887
No 341
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=79.45 E-value=1.8 Score=39.14 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=27.0
Q ss_pred eEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
-|||||+|+|.++......|...|++++.-..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkP 100 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKP 100 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhch
Confidence 48999999999998887777668999987655
No 342
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=79.36 E-value=17 Score=31.53 Aligned_cols=84 Identities=20% Similarity=0.138 Sum_probs=49.8
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCCC-----------CCCcee
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLPF-----------FDEAFD 150 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~~-----------~~~~fD 150 (229)
..+++.+||=.|+|. |..+..++.. |..++++++.+++..+ ++ +..+..+ ....+|
T Consensus 174 ~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 174 PVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATI--DIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEE--cCcccccHHHHHHHHHHhCCCCCc
Confidence 345788898888653 4455555555 7658888887654211 11 1111111 124688
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|+...- ....+.+..+.++++|+++.+
T Consensus 252 ~vid~~g-----~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEASG-----HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEEECCC-----ChHHHHHHHHHhccCCEEEEE
Confidence 8885321 123567778899999998754
No 343
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.08 E-value=8.6 Score=33.17 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=53.6
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----C-CCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----P-FFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~-~~~~~fD~V~ 153 (229)
...++++.+||-.|+|. |..+..+++. |...++++|.+++..+ ++..+-.+. . .....+|+|+
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence 34567889999998763 5566666666 7767899988754211 111111110 0 1224588888
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...- ....+.++.+.|+++|+++.+
T Consensus 241 d~~g-----~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 241 IAGG-----GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred ECCC-----CHHHHHHHHHHhhcCCEEEEe
Confidence 5211 124678889999999998744
No 344
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.87 E-value=7.4 Score=33.56 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=51.2
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC-------CCCCcee-EEEc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFD-VAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD-~V~~ 154 (229)
...+++.+||=.|+|+ |..+..+++. |...++++|.+++..++ ...+..+.. .....+| +|+-
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 3457889999998765 5566666665 77558888877652211 001111100 1123566 5543
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
. +. -...+.+..+.+++||+++++
T Consensus 236 ~-~G----~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 236 T-AG----VPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred C-CC----CHHHHHHHHHHhhcCCEEEEE
Confidence 1 11 134677888999999998755
No 345
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=78.64 E-value=7.6 Score=33.97 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=52.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCC--CC-----CCCCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPH--NL-----PFFDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~--~~-----~~~~~~fD~V 152 (229)
...++++.+||=.|+|. |..+..+++. |...|+++|.+++..+ ++...-. +. ...++.+|+|
T Consensus 181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~v 260 (368)
T cd08300 181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYT 260 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEE
Confidence 34568899999998764 5566666665 7657999988765222 1111100 00 0112358888
Q ss_pred EcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+-.. . ....+.+..+.++++ |+++.+
T Consensus 261 id~~-g----~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 261 FECI-G----NVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred EECC-C----ChHHHHHHHHhhccCCCeEEEE
Confidence 7521 1 124667778889887 987754
No 346
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.32 E-value=18 Score=30.71 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=53.7
Q ss_pred hcccCCCCCeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCC-CC-----CCCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPH-NL-----PFFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~-~~-----~~~~~~fD~ 151 (229)
....++++.+||=.|+ |.|..+..+++. |. ++++++.+++..+ ++..+-. .. ....+.+|+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEE
Confidence 3455688999999985 347777778777 76 7888877654211 1111110 11 011246888
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+-.. . ...+....+.+++||+++.+
T Consensus 211 v~d~~-G-----~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 211 YFDNV-G-----GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEECC-C-----HHHHHHHHHHhCcCcEEEEe
Confidence 88521 1 12457788999999998854
No 347
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=78.24 E-value=9.3 Score=33.31 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCC-Ch-hhHHHHhCCCCeEEEecCCCCCCe-EEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHh
Q 027039 96 NHSKVLCVSAGA-GH-EVMAFNSIGVADVTGVELMDSLPL-VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMER 172 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~-~~~~l~~~g~~~v~~vD~s~~~~~-~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~ 172 (229)
.+++|.=||+|. |. .+..+...|. +|+++|.++.... +.. -..++.-.-...|+|+..--........+-.+...
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~~~-~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDFLT-YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhhhh-ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHh
Confidence 466899999886 43 3444455577 9999998765321 111 00111101145688886421110011223467777
Q ss_pred ccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 173 TVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 173 ~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
.+|||..++ .+....--+...+.+.++..++.
T Consensus 223 ~mk~gavlI-N~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 223 HVKKGAILV-NAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred cCCCCcEEE-EcCCccccCHHHHHHHHHcCCee
Confidence 889887655 66665555667788888766654
No 348
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=78.01 E-value=2.6 Score=36.55 Aligned_cols=88 Identities=23% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCC-ChhhHHHHhCCCCeEEEecCCCCCCe-----------EEEcCCCCCCCCCCceeEEEcccchhhh-C
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~~g~~~v~~vD~s~~~~~-----------~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~ 162 (229)
+..+|.-||.|. |..+..++...-.+|+-.|.|...+. ..-.+..++.-.-...|+++..-+.-.. .
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 356788888886 88888888773349999999966332 2222222222223578999876444333 6
Q ss_pred HHHHHHHHHhccccCcEEEEE
Q 027039 163 PSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~ 183 (229)
|.-..+++.+.+|||+.++=+
T Consensus 247 PkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 247 PKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ceehhHHHHHhcCCCcEEEEE
Confidence 777789999999999987743
No 349
>PRK11524 putative methyltransferase; Provisional
Probab=77.60 E-value=2.4 Score=36.06 Aligned_cols=38 Identities=18% Similarity=0.051 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~ 133 (229)
.+|..|||-=+|+|..+.+..+.|- +.+|+|++++..+
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~ 244 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIK 244 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHH
Confidence 7899999999999999998888875 9999999987443
No 350
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=77.27 E-value=9.1 Score=33.42 Aligned_cols=88 Identities=19% Similarity=0.270 Sum_probs=51.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-------CCCCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-------PFFDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-------~~~~~~fD~V 152 (229)
...++++.+||=.|+|. |..+..+++. |..+|+++|.++...+ ++...-.+. ....+.+|+|
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~v 258 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYS 258 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEE
Confidence 34568899999998754 5555556665 7657999988764221 111100000 0112458888
Q ss_pred EcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+-..- ....+.+..+.++++ |+++.+
T Consensus 259 id~~g-----~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 259 FECTG-----NADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred EECCC-----ChHHHHHHHHhcccCCCEEEEE
Confidence 85211 124567788889886 988754
No 351
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.13 E-value=24 Score=30.31 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=53.5
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC---------CCCCCce
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL---------PFFDEAF 149 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~---------~~~~~~f 149 (229)
....++++.+||-.|+|. |..+..+++. |...+++++.+++..+ ++..+-.+. ......+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGP 235 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCC
Confidence 345668899998888765 6666666766 7644888876653211 111111110 1223458
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+|+-..- ....+.+..+.++++|+++..
T Consensus 236 d~vld~~g-----~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 236 DVVIECTG-----AESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CEEEECCC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 99886321 123677888999999998744
No 352
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=77.03 E-value=6.7 Score=33.14 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=55.7
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe--------EEEcCC------CCCCCCCCceeEEEcccchhhh
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL--------VSRADP------HNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~--------~~~~d~------~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
++|+=||+|. +.++..|++.|+ +|+.++.+++..+ +..++. ..-+-+...+|+|+..- ...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~--k~~ 77 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAV--KAY 77 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEec--ccc
Confidence 3688899986 345555666676 8999987544221 101110 00000115789888742 112
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
....+++.+...+.++..++..... -...+.+.+.+....
T Consensus 78 ~~~~~~~~l~~~l~~~~~iv~~~nG--~~~~~~l~~~~~~~~ 117 (304)
T PRK06522 78 QLPAALPSLAPLLGPDTPVLFLQNG--VGHLEELAAYIGPER 117 (304)
T ss_pred cHHHHHHHHhhhcCCCCEEEEecCC--CCcHHHHHHhcCccc
Confidence 3466788888888777766544433 223345566665433
No 353
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=76.98 E-value=32 Score=29.62 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=52.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------CCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~ 153 (229)
...++++.+||=.|+|. |..+..++.. |...|++++.+++..+. ...+..+.. ...+.+|+|+
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 34567888998888653 4555555655 76678888776542211 011111111 1123488888
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
-..- ....++.+.+.|+++|+++.+-
T Consensus 247 d~~g-----~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 247 DCAG-----VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred ECCC-----CHHHHHHHHHhccCCCEEEEEc
Confidence 5321 1235677888999999987543
No 354
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=76.78 E-value=4.6 Score=36.76 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhC--C-CCeEEEecCCCCCCeEEE---------------c-CCCC--CCCC-CCceeEEE
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI--G-VADVTGVELMDSLPLVSR---------------A-DPHN--LPFF-DEAFDVAF 153 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~--g-~~~v~~vD~s~~~~~~~~---------------~-d~~~--~~~~-~~~fD~V~ 153 (229)
....+.|+|.|.|.-.-++... + ...++.||.+..+..... . -+++ +|.. .+.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4556888888876544443333 2 457899999877433111 1 1111 2332 45699999
Q ss_pred cccchhhh-CH---HHHHHHHH-hccccCcEEEEEeecCCcccHHHHHHHH
Q 027039 154 TAHLAEAL-FP---SRFVGEME-RTVKIGGVCMVLMEECAGREIKQIVELF 199 (229)
Q Consensus 154 ~~~~~~~~-~~---~~~l~~~~-~~LkpgG~lil~~~~~~~~~~~~l~~l~ 199 (229)
+.+..++. .+ ....+... +..++||+++ ++.....-..+-+.+..
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lV-iIe~g~~~g~e~l~eaR 329 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLV-IIEKGTTMGLELLTEAR 329 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEE-EEecCCccchhhHHHHH
Confidence 99877766 43 23334444 4677888877 44444444444444443
No 355
>PRK13699 putative methylase; Provisional
Probab=76.67 E-value=3.2 Score=34.14 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL 131 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~ 131 (229)
..+|..|||-=||+|..+.+..+.|. +.+|+|+++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y 197 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQY 197 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHH
Confidence 36899999999999999999888876 99999999874
No 356
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=76.59 E-value=17 Score=30.72 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=52.9
Q ss_pred cccCCCCCeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----CCCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----PFFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~~~~~~fD~V~ 153 (229)
...++++.+||=.|+ |.|..+..+++. |. ++++++.+++..+ ++...-.+. ....+.+|+|+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vl 216 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYF 216 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEE
Confidence 345688999998884 346777777776 77 7888876654211 121111111 01124588888
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
-.. . ...+....+.++++|+++.+
T Consensus 217 d~~-g-----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 217 DNV-G-----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred ECC-C-----HHHHHHHHHhhccCCEEEEE
Confidence 521 1 24567888999999998754
No 357
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=76.36 E-value=5 Score=34.37 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=51.3
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC------CCCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL------PFFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~------~~~~~~fD~V~~ 154 (229)
..++++.+||-.|+|. |..+..+++. |...+++++.++...+ ++...-.++ -..++.+|+++.
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 3457888999877653 5566666666 6547888866544211 111111111 012356898885
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..- ....+.+..+.|+++|+++..
T Consensus 243 ~~g-----~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 243 AVG-----FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred ccC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 311 124678888999999997744
No 358
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=76.26 E-value=23 Score=26.46 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCC---cccHHHHHHHHhcCceeEeeeeee-cCCeeEEEE
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA---GREIKQIVELFRTSRFVDAANVTV-NGSNMTRIL 221 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~---~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~ 221 (229)
++..|.|+...-..--+....+-.+.+.|..+|.++++++..+ .-+..++.+.....++..+..... ..++-.+.+
T Consensus 43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~~t~~~~v~~dWsg~rLv 122 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLVQTKSCAVGDDWSGTRLV 122 (127)
T ss_pred cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCeeeeeeccCCCccEEEee
Confidence 4567887764322222567778888899999999999997643 335677899999999999988765 447666666
Q ss_pred EEec
Q 027039 222 MRRT 225 (229)
Q Consensus 222 ~~~~ 225 (229)
-+|.
T Consensus 123 ~rk~ 126 (127)
T PF11253_consen 123 RRKS 126 (127)
T ss_pred ccCC
Confidence 5554
No 359
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=75.66 E-value=19 Score=30.40 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCCChhhHHHH----hCC-CCeEEEecCCCCC----------------CeEEEcCCCC-CC-CCCCceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFN----SIG-VADVTGVELMDSL----------------PLVSRADPHN-LP-FFDEAFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~----~~g-~~~v~~vD~s~~~----------------~~~~~~d~~~-~~-~~~~~fD~ 151 (229)
..+...+|+|+|+..-+..|. ..+ ...++.+|++... +.-+.+|.+. +. .+...--+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 458899999999997776654 333 3589999999772 1233334332 11 11222222
Q ss_pred -EEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecCC
Q 027039 152 -AFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 152 -V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
++.......+.| ..++.++...++||-.+++-++...
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 222233333344 5688999999999999998887643
No 360
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.48 E-value=4 Score=36.34 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=29.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
.++++.+||.|.+|.......+...|. +|++||+|+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~P~-~I~aVDlNp~ 68 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAGPK-RIHAVDLNPA 68 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcCCc-eEEEEeCCHH
Confidence 458999999998886666666555564 9999999998
No 361
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=74.99 E-value=29 Score=28.09 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC----C--CCeEEEecCCCCC----------CeEEEcCCCCCC-------CCCCceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI----G--VADVTGVELMDSL----------PLVSRADPHNLP-------FFDEAFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~----g--~~~v~~vD~s~~~----------~~~~~~d~~~~~-------~~~~~fD~ 151 (229)
..++.|+++|.-.|--+...+.. | + +|.++|++-.+ +.|++++-.+.. ..++.--+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~-kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPF-KVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCc-eEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 36788999999998777666543 4 4 89999988553 448888766632 11222222
Q ss_pred EEcccchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.++-...|+. .-..-++...++|.-|-++++.
T Consensus 147 fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 147 FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred EEEecCCchHHHHHHHHHHhhhHhhcCceEEEe
Confidence 2222333333 4455566777888888886643
No 362
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=73.22 E-value=10 Score=31.31 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=52.6
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEEE--c--C----CCCCCCCCCceeEEEcccchhh
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVSR--A--D----PHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~~--~--d----~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
...++++.++|-.|+|. |..+..++.. |..++++++.+++..+... + + ..+.......+|+|+....
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~--- 168 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASG--- 168 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccC---
Confidence 34567889999998765 5566666665 7634999987654322100 0 0 0000012346888885311
Q ss_pred hCHHHHHHHHHhccccCcEEEEE
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+.+..+.++++|+++.+
T Consensus 169 --~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 169 --SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred --ChHHHHHHHHHhcCCcEEEEE
Confidence 123567788899999998754
No 363
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=71.94 E-value=14 Score=32.81 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=53.7
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC--------eEEEcCC-CCCC------CCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP--------LVSRADP-HNLP------FFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~--------~~~~~d~-~~~~------~~~~~fD~V~~ 154 (229)
..++++.+||=.|+|. |..+..++.. |...++.+|.++... ..+...- .+.. .....+|+++-
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 4457888888888765 5666666665 775677777765311 1111100 0100 11235888885
Q ss_pred ccchh---------hhCHHHHHHHHHhccccCcEEEEEe
Q 027039 155 AHLAE---------ALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 155 ~~~~~---------~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
..-.. ...+...+++..+.+++||+++++-
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 31110 0023457888999999999988543
No 364
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.44 E-value=16 Score=30.73 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=64.2
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe------------E-EEc--C----------C---CCCCCCCC
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL------------V-SRA--D----------P---HNLPFFDE 147 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~------------~-~~~--d----------~---~~~~~~~~ 147 (229)
.+|.=||+|. +..+..++..|. +|+.+|++++.++ . ..+ + . .+.. .-.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 3688889985 556666777787 9999998876442 0 000 0 0 0111 124
Q ss_pred ceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeee
Q 027039 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVT 211 (229)
Q Consensus 148 ~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~ 211 (229)
..|+|+-.-.....-..+++.++.+.++|+..+. ......+...+.+..+ ..+++..+-+.
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~---s~ts~~~~~~la~~~~~~~r~ig~h~~~ 143 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILA---TNTSSLSITELAAATKRPDKVIGMHFFN 143 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE---ECCCCCCHHHHHHhhCCCcceEEeeccC
Confidence 5788886422211124688899999999987753 2222345556666553 45666666554
No 365
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=71.14 E-value=27 Score=29.89 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=50.9
Q ss_pred cCCCC--CeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCCCe----------EEEcCCCCC-----CCCCCceeEE
Q 027039 93 LLFNH--SKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSLPL----------VSRADPHNL-----PFFDEAFDVA 152 (229)
Q Consensus 93 ~~~~~--~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------~~~~d~~~~-----~~~~~~fD~V 152 (229)
.++++ .+||=.|+ |.|..+..+++. |..+|++++.+++..+ ++..+-.++ ...++.+|+|
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 34555 89999886 347777777776 7657888877654211 111111111 0112468988
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+... .. ..+.+..+.|+++|+++.+
T Consensus 229 id~~-g~-----~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 229 FDNV-GG-----EISDTVISQMNENSHIILC 253 (345)
T ss_pred EECC-Cc-----HHHHHHHHHhccCCEEEEE
Confidence 8521 11 1246788899999998854
No 366
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=70.95 E-value=23 Score=30.58 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=62.1
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCC-------CCeEEEcCC--------CCCCCCCCceeEEEcccchhh
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDS-------LPLVSRADP--------HNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~-------~~~~~~~d~--------~~~~~~~~~fD~V~~~~~~~~ 160 (229)
++|+=+|+|. |.++..|++.| .+|+.+--++. .+.+...+. ...+.....+|+|+.. ...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~--vKa 77 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT--VKA 77 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE--ecc
Confidence 4788899997 67777788888 47777766653 122211111 0011223579999973 232
Q ss_pred hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcC
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~ 202 (229)
.+..+++..+.+.++|+..+++....-+.+ +.+.+.+...
T Consensus 78 ~q~~~al~~l~~~~~~~t~vl~lqNG~g~~--e~l~~~~~~~ 117 (307)
T COG1893 78 YQLEEALPSLAPLLGPNTVVLFLQNGLGHE--EELRKILPKE 117 (307)
T ss_pred ccHHHHHHHhhhcCCCCcEEEEEeCCCcHH--HHHHHhCCcc
Confidence 346789999999999999877555443332 2556666554
No 367
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=70.95 E-value=1.1 Score=40.32 Aligned_cols=40 Identities=23% Similarity=0.092 Sum_probs=36.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~ 133 (229)
.+++|..|.|+-||-|.++..++..++ .|++-|.++.+++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik 285 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIK 285 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHH
Confidence 458999999999999999999999986 9999999998544
No 368
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=70.83 E-value=11 Score=34.71 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCC-ChhhHHHH-hCCCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFN-SIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~-~~g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
-.|.+|+=+|+|. |......+ ..|. +|+.+|.++.... +...+..++ -...|+|+...- ...+
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~~~leel---l~~ADIVI~atG-----t~~i 322 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQVVTLEDV---VETADIFVTATG-----NKDI 322 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCceeccHHHH---HhcCCEEEECCC-----cccc
Confidence 4788999999996 33322222 2376 8999987755321 111111111 146899987421 1223
Q ss_pred H-HHHHhccccCcEEEEEeec
Q 027039 167 V-GEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 167 l-~~~~~~LkpgG~lil~~~~ 186 (229)
+ .+....+|||+.++ .+..
T Consensus 323 I~~e~~~~MKpGAiLI-NvGr 342 (476)
T PTZ00075 323 ITLEHMRRMKNNAIVG-NIGH 342 (476)
T ss_pred cCHHHHhccCCCcEEE-EcCC
Confidence 4 46788899999987 4444
No 369
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=70.67 E-value=13 Score=32.37 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=53.0
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----CCCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----PFFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~~~~~~fD~V~~~ 155 (229)
..++++.+||-.|+|. |..+..+++. |...++++|.++.... ++..+-.+. ......+|+|+-.
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 4567889999988764 5666666666 8767999988765221 111111110 0113458888753
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.- ....+.++.+.++++|+++..
T Consensus 262 ~g-----~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 262 TG-----VPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CC-----CcHHHHHHHHHhccCCEEEEe
Confidence 11 123567888999999997754
No 370
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=70.49 E-value=18 Score=30.92 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=53.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC------CCCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL------PFFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~------~~~~~~fD~V~ 153 (229)
...+.++.+||-.|+|. |..+..+++. |. +++++..+++..+ ++...-.++ ...+..+|+++
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vl 232 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVI 232 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEE
Confidence 34567889999998764 6677777776 76 7888865544221 111111110 01234588888
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.... ....+.++.+.|+++|+++..
T Consensus 233 d~~g-----~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 233 DATG-----NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred ECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 6421 134577888999999997744
No 371
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.86 E-value=2.3 Score=33.42 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC----CCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~----g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~ 164 (229)
-.+.+|.=||+| ..+..+++. |. +|+++|.+..... +...+.+++ -...|+|+..- .....-.
T Consensus 34 l~g~tvgIiG~G--~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~l~el---l~~aDiv~~~~-plt~~T~ 106 (178)
T PF02826_consen 34 LRGKTVGIIGYG--RIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEYVSLDEL---LAQADIVSLHL-PLTPETR 106 (178)
T ss_dssp STTSEEEEESTS--HHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEESSHHHH---HHH-SEEEE-S-SSSTTTT
T ss_pred cCCCEEEEEEEc--CCcCeEeeeeecCCc-eeEEecccCChhhhcccccceeeehhhh---cchhhhhhhhh-ccccccc
Confidence 368899999887 444444433 77 9999999887432 222222221 14678888741 1000001
Q ss_pred HHH-HHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 165 RFV-GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 165 ~~l-~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
.++ .+....+|+|..++ .+....--+...+.+.+++..+.
T Consensus 107 ~li~~~~l~~mk~ga~lv-N~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 107 GLINAEFLAKMKPGAVLV-NVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TSBSHHHHHTSTTTEEEE-ESSSGGGB-HHHHHHHHHTTSEE
T ss_pred eeeeeeeeeccccceEEE-eccchhhhhhhHHHHHHhhccCc
Confidence 111 34566788888765 66665555667788888877665
No 372
>PRK06487 glycerate dehydrogenase; Provisional
Probab=69.45 E-value=16 Score=31.61 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCC-ChhhHHHHh-CCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHH-HHHHh
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GEMER 172 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~-~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l-~~~~~ 172 (229)
.+.+|.=||.|. |......+. .|. +|.+.|...........+..++ -..-|+|+.+- .....-..++ .+...
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~~~~~~~~~~l~el---l~~sDiv~l~l-Plt~~T~~li~~~~~~ 221 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPGRPARPDRLPLDEL---LPQVDALTLHC-PLTEHTRHLIGARELA 221 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCCcccccccCHHHH---HHhCCEEEECC-CCChHHhcCcCHHHHh
Confidence 456888998875 543333332 376 8999997643211111111111 13568888741 1100011122 44566
Q ss_pred ccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe-eeee
Q 027039 173 TVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA-ANVT 211 (229)
Q Consensus 173 ~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~ 211 (229)
.+|||..++ .+....--+...|.+.+++.++-.. -|+.
T Consensus 222 ~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf 260 (317)
T PRK06487 222 LMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVL 260 (317)
T ss_pred cCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 778888766 7776666677788888887666533 4553
No 373
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=69.43 E-value=28 Score=30.25 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=47.5
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC---------e-EEEc-CCCCCCCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP---------L-VSRA-DPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~---------~-~~~~-d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..+++.+||-.|+|. |..+..+++. |. ++++++.+++.. . ++.. +...+.-....+|+|+-.. .
T Consensus 177 ~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~-g- 253 (357)
T PLN02514 177 LKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV-P- 253 (357)
T ss_pred cCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC-C-
Confidence 346788998887754 5666666666 76 677776554311 1 1100 0000000012477777421 1
Q ss_pred hhCHHHHHHHHHhccccCcEEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+....+.+++||+++.+
T Consensus 254 ---~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 254 ---VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred ---chHHHHHHHHHhccCCEEEEE
Confidence 124567778899999998754
No 374
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.59 E-value=19 Score=30.40 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=65.4
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCeEE-------------EcCC---------------CCCCCCCC
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVS-------------RADP---------------HNLPFFDE 147 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~-------------~~d~---------------~~~~~~~~ 147 (229)
.+|.=||+|. +..+..++..|+ +|+.+|.+++.++-. .+.+ .++.-.-.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 3577888885 345555666687 999999987633210 0000 01100113
Q ss_pred ceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc-CceeEeeeeeecCCeeEEEE
Q 027039 148 AFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT-SRFVDAANVTVNGSNMTRIL 221 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~ 221 (229)
..|+|+..- .... ....++.++.+.++|+..++..++. -+...+.+..+. .++..++-+ .+-+.++.+.
T Consensus 81 ~aD~Vi~av-pe~~~~k~~~~~~l~~~~~~~~il~~~tSt---~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~~Lve 151 (288)
T PRK09260 81 DADLVIEAV-PEKLELKKAVFETADAHAPAECYIATNTST---MSPTEIASFTKRPERVIAMHFF-NPVHKMKLVE 151 (288)
T ss_pred CCCEEEEec-cCCHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCCcccEEEEecC-CCcccCceEE
Confidence 568888642 2222 2356778888888888764433333 444566666654 456676666 4444333333
No 375
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=68.26 E-value=18 Score=31.81 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=52.9
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCC-CC-----CCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPH-NL-----PFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~-~~-----~~~~~~fD~V~~~ 155 (229)
..+++.+|.-+|||. |..++.-+.. |..+++++|+++...+ ++...-. ++ ...++-.|.++-
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e- 260 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFE- 260 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEE-
Confidence 458899999999996 7666666666 8889999999988332 2222111 00 112223444332
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..--.+.++...+.++++|..+++
T Consensus 261 ----~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 261 ----CVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred ----ccCCHHHHHHHHHHHhcCCeEEEE
Confidence 111233677777777789987754
No 376
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=67.88 E-value=15 Score=32.41 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=48.3
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC-Ce---------EEEc-CCCCCCCCCCceeEEEcccchhhh
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL-PL---------VSRA-DPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~-~~---------~~~~-d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
+++.+||-.|+|. |..+..+++. |. ++++++.+++. .+ ++.. +...+.-..+.+|+|+-.. .
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~-G--- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV-S--- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC-C---
Confidence 5788999998865 6666666666 76 78888766431 11 1110 0000000012477777521 1
Q ss_pred CHHHHHHHHHhccccCcEEEEE
Q 027039 162 FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+.+..+.+++||+++.+
T Consensus 252 -~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 252 -AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -cHHHHHHHHHhhcCCCEEEEE
Confidence 123567788899999998854
No 377
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=67.57 E-value=37 Score=29.46 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=52.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----C-CCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----P-FFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~-~~~~~fD~V~ 153 (229)
...+.++.+||-.|+|. |..+..+++. |...|++++.++...+ ++..+..+. . .+...+|+++
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vl 256 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAF 256 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEE
Confidence 34567888998887753 5555666665 7745888876654211 111111110 0 1235688887
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...- ....+.++.+.|+++|+++..
T Consensus 257 d~~~-----~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 257 EAVG-----RAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EcCC-----ChHHHHHHHHHhhcCCeEEEE
Confidence 5221 134577888999999998754
No 378
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=67.47 E-value=6.4 Score=34.07 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=41.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC--------------eEEEcCCCCCC-----C-CCCceeEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLP-----F-FDEAFDVA 152 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~--------------~~~~~d~~~~~-----~-~~~~fD~V 152 (229)
.+++..++|.--|.|-.+.++.+. +.++++|+|.++.++ .++++++.++. . ..+.+|.|
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgi 97 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGI 97 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEE
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEE
Confidence 578889999999999999999987 558999999998733 36666665542 2 33578888
Q ss_pred Ecc
Q 027039 153 FTA 155 (229)
Q Consensus 153 ~~~ 155 (229)
+..
T Consensus 98 L~D 100 (310)
T PF01795_consen 98 LFD 100 (310)
T ss_dssp EEE
T ss_pred EEc
Confidence 765
No 379
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=67.41 E-value=10 Score=32.70 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=31.1
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcC
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~ 202 (229)
++...+ ...+++..+.++|+|||++++++-..- +.+-++..|++.
T Consensus 215 ~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHSL--EDRiVK~ff~~~ 260 (314)
T COG0275 215 YVNDELEELEEALEAALDLLKPGGRLAVISFHSL--EDRIVKNFFKEL 260 (314)
T ss_pred eehhHHHHHHHHHHHHHHhhCCCcEEEEEEecch--HHHHHHHHHHHh
Confidence 344444 467899999999999999986665522 334466777733
No 380
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=67.12 E-value=27 Score=29.61 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=52.8
Q ss_pred ccCCCCCeEEEEcCC-CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC-CCCCceeEEEcccchh
Q 027039 92 SLLFNHSKVLCVSAG-AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP-FFDEAFDVAFTAHLAE 159 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~-~~~~~fD~V~~~~~~~ 159 (229)
..+.++.+||-.|+| .|..+..++.. |. ++++++.++...+ ++...-.... -..+.+|+++....
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~-- 234 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV-- 234 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC--
Confidence 346788899999887 46666666666 76 7888877765322 1111100000 01245888875321
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEe
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
....+.++.+.++++|.++.+.
T Consensus 235 ---~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---cHHHHHHHHHhcccCCEEEEEC
Confidence 1235677889999999988653
No 381
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=67.06 E-value=41 Score=29.52 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=51.7
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC--------Ce-EEEcCCC---CC-----C-CCCCceeE
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL--------PL-VSRADPH---NL-----P-FFDEAFDV 151 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~--------~~-~~~~d~~---~~-----~-~~~~~fD~ 151 (229)
..++++.+||=.|+|. |..+..++.. |...+++++.++.. +. ++...-. +. . .....+|+
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDv 278 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADI 278 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCE
Confidence 3567888888887654 4445555555 76578888876531 11 1111000 10 0 12346898
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+.. .. .+...+.++.+.|+++|+++.+
T Consensus 279 vld~-~g---~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 279 QVEA-AG---APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred EEEC-CC---CcHHHHHHHHHHHHcCCEEEEE
Confidence 8853 11 2345677888999999998854
No 382
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=67.02 E-value=33 Score=29.64 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCC-Ch-hhHHHHhCCCCeEEEecCCCCCCe-EEEc-CCCCCCCCCCceeEEEcccchhhhCHHHHH-HHH
Q 027039 96 NHSKVLCVSAGA-GH-EVMAFNSIGVADVTGVELMDSLPL-VSRA-DPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GEM 170 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~-~~~~l~~~g~~~v~~vD~s~~~~~-~~~~-d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l-~~~ 170 (229)
.+.+|.=||.|. |. .+..+...|. +|.++|.+..... +... ...++.-.-...|+|+..- .....-..++ .+.
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~l-Plt~~T~~li~~~~ 212 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLL-PNTPETVGIINQQL 212 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECC-CCCHHHHHHhHHHH
Confidence 467888888885 53 3333444477 9999998765322 1111 1111110013568888741 1111112233 457
Q ss_pred HhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe-eeee
Q 027039 171 ERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA-ANVT 211 (229)
Q Consensus 171 ~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~ 211 (229)
...+|||..++ .+....--+...|.+.++..++... -||.
T Consensus 213 l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 213 LEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred HhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence 77899987655 6666665567778888887766542 3443
No 383
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=66.93 E-value=48 Score=28.04 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=50.3
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEE-------EcCCCCCCCCCCceeEEEcccchhhh
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVS-------RADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~-------~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
...++++.++|=.|+|. |..+..++.. |. ++++++.++...++. ..+.... .+..+|+++....
T Consensus 162 ~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~vD~vi~~~~---- 234 (329)
T cd08298 162 LAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDSDDL--PPEPLDAAIIFAP---- 234 (329)
T ss_pred hhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEeccCcc--CCCcccEEEEcCC----
Confidence 34567888888887653 3444445555 75 888887665422110 0111111 2346888774211
Q ss_pred CHHHHHHHHHhccccCcEEEEE
Q 027039 162 FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+.++.+.++++|+++..
T Consensus 235 -~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 235 -VGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred -cHHHHHHHHHHhhcCCEEEEE
Confidence 124688899999999998853
No 384
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=66.56 E-value=9.2 Score=34.10 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=37.0
Q ss_pred eEEEcCCCCC--CCCCCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEe
Q 027039 133 LVSRADPHNL--PFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 133 ~~~~~d~~~~--~~~~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~ 184 (229)
.++++++.+. ..+++++|.++.......+++ .+.++++.+.++|||+++.-.
T Consensus 278 ~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 278 RIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred EEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 3666666552 245799999987755555543 677899999999999977443
No 385
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=66.56 E-value=27 Score=29.85 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=51.9
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCC---C-CC-CCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHN---L-PF-FDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~---~-~~-~~~~fD~V~~~ 155 (229)
..+.++.+||-.|+|. |..+..++.. |...+++++.++...+ ++..+-.. + .. ....+|+++..
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 3457888999998755 5666666665 7744888876654211 11111000 0 11 12348888863
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
. .....+..+.+.|+++|+++.+
T Consensus 235 ~-----g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 235 A-----GSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred C-----CCHHHHHHHHHHhhcCCEEEEE
Confidence 1 1234667888999999997754
No 386
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=66.49 E-value=25 Score=30.13 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCChhhHHHH--hCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCC---CCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFN--SIGVADVTGVELMDSL---------------PLVSRADPHNLPFF---DEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~--~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~---~~~fD~V~~~ 155 (229)
.|..|+-+| -.-..+++++ ..+. ++..+|+++.. ++...-|..+ |++ ...||+.+..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecC
Confidence 466799998 4444444444 3354 89999999763 3344555554 333 3689998874
Q ss_pred cchhhh-CHHHHHHHHHhccccC---cEEEEEeecCCcccHHHHHH-HHhcCceeEe
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIG---GVCMVLMEECAGREIKQIVE-LFRTSRFVDA 207 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~Lkpg---G~lil~~~~~~~~~~~~l~~-l~~~~~~~~~ 207 (229)
- .+.. -...++.+=...||.. |++.+...+..-+...++++ +.+..+++-.
T Consensus 229 P-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVIT 284 (354)
T COG1568 229 P-PETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVIT 284 (354)
T ss_pred c-hhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeH
Confidence 2 1111 2355666666778776 88888888777777788888 6667666643
No 387
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=66.21 E-value=13 Score=29.59 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCccc--HHHHHHHHh
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGRE--IKQIVELFR 200 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~--~~~l~~l~~ 200 (229)
.....+.++.|+|||||.+++.++...... ...+.+.++
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g 74 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG 74 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh
Confidence 357789999999999999998887754432 344455555
No 388
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.18 E-value=6.5 Score=34.23 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=51.3
Q ss_pred cCCCCCeEEEEcCC-CChhhHHHHhC-CCCeEEEecCCCC----------CCeEEEcCCC-C-CCCCCCceeEEEcc--c
Q 027039 93 LLFNHSKVLCVSAG-AGHEVMAFNSI-GVADVTGVELMDS----------LPLVSRADPH-N-LPFFDEAFDVAFTA--H 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G-~G~~~~~l~~~-g~~~v~~vD~s~~----------~~~~~~~d~~-~-~~~~~~~fD~V~~~--~ 156 (229)
.+.||..+--+|.| -|..+..+++. |. +|+++|-++. .-.|+...-+ + ..-..++.|.++-. +
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeee
Confidence 44689988777765 59999999988 88 9999999863 1113322211 1 00001233433321 1
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+. ...+..+.+.||++|+++++
T Consensus 257 ~a-----~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 257 LA-----EHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred cc-----ccchHHHHHHhhcCCEEEEE
Confidence 11 22345578899999998865
No 389
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=66.16 E-value=58 Score=27.43 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=53.5
Q ss_pred CeEEEEcCCC-C-hhhHHHHhCCCCeEEEecCCCCC--------CeEEEcCC---------CCCCCCCCceeEEEcccch
Q 027039 98 SKVLCVSAGA-G-HEVMAFNSIGVADVTGVELMDSL--------PLVSRADP---------HNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 98 ~~vLDiG~G~-G-~~~~~l~~~g~~~v~~vD~s~~~--------~~~~~~d~---------~~~~~~~~~fD~V~~~~~~ 158 (229)
++|+=+|+|. | .++..|++.|+ +|+.++. ++. +.....+. .+..-....+|+|+..-
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav-- 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV-- 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe--
Confidence 3678888887 3 35555666676 8888887 321 11111110 01100125789887631
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
......++++++...++++..++ .+... -...+.+.+.+...+
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii-~~~nG-~~~~~~l~~~~~~~~ 119 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVII-PLQNG-IGQLEQLEPYFGRER 119 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEE-EeeCC-CChHHHHHHhCCccc
Confidence 11134667788888887776544 33331 223455666666544
No 390
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=66.14 E-value=17 Score=31.12 Aligned_cols=86 Identities=8% Similarity=0.053 Sum_probs=50.5
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC---CCCCceeEEEcccch
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP---FFDEAFDVAFTAHLA 158 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~---~~~~~fD~V~~~~~~ 158 (229)
.+.++.+||=.|+|. |..+..++.. |. +++.++.++...+ ++...-.+.. ...+.+|+++... .
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~-g 237 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATA-P 237 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECC-C
Confidence 457888999999654 5555555655 76 7888887754221 1111111110 0013478887521 0
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
....+....+.++++|+++.+-
T Consensus 238 ----~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 238 ----NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred ----chHHHHHHHHHcccCCEEEEEe
Confidence 1346777888999999988553
No 391
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=65.89 E-value=35 Score=29.60 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=50.0
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC------CCCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL------PFFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~------~~~~~~fD~V~~ 154 (229)
..+.++.+||-.|+|. |..+..+++. |...+++++.++...+ ++..+-.+. ...+..+|+|+.
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld 262 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVE 262 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEE
Confidence 3446788888776542 4555555555 7644888876654211 221111111 012356898886
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
. +.. ...+.+..+.|+++|+++..
T Consensus 263 ~-vg~----~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 263 A-LGK----PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred e-CCC----HHHHHHHHHHHhcCCEEEEE
Confidence 3 111 13567788999999998755
No 392
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=65.50 E-value=7.9 Score=32.37 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=57.6
Q ss_pred hHHHHhCC-CCeEEEecCCCCCCeEE-EcCCCCCCC----CCCceeEEEccc-chhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 111 VMAFNSIG-VADVTGVELMDSLPLVS-RADPHNLPF----FDEAFDVAFTAH-LAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 111 ~~~l~~~g-~~~v~~vD~s~~~~~~~-~~d~~~~~~----~~~~fD~V~~~~-~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+.+|.+.| ..+|+|+|.++...... ...+-+-.. .-..+|+|+..- +.. ..++++++...+++|+.+.=
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~---~~~~l~~~~~~~~~~~iv~D- 77 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA---IEDVLEEIAPYLKPGAIVTD- 77 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH---HHHHHHHHHCGS-TTSEEEE-
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH---HHHHHHHhhhhcCCCcEEEE-
Confidence 56777775 45999999998743311 001111000 013469988642 222 56788888898999887553
Q ss_pred eecCCcccHHHHHHHHh-cCceeEeeeeeec
Q 027039 184 MEECAGREIKQIVELFR-TSRFVDAANVTVN 213 (229)
Q Consensus 184 ~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~ 213 (229)
+..-.....+.+.+... ..+++..+-..++
T Consensus 78 v~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~ 108 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLLPEGVRFVGGHPMAGP 108 (258)
T ss_dssp --S-CHHHHHHHHHHHTSSGEEEEEEESCST
T ss_pred eCCCCHHHHHHHHHhcCcccceeecCCCCCC
Confidence 33333445556666666 7888999888777
No 393
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=64.70 E-value=25 Score=30.31 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCC-ChhhHHHHh-CCCCeEEEecCCCCCCe--EEEcCCCCCCCCCCceeEEEcccchhhhCHHHHH-HHH
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL--VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GEM 170 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~-~g~~~v~~vD~s~~~~~--~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l-~~~ 170 (229)
.+.+|.=||.|. |.....++. .|. +|.++|....... +...+.+++ + ..-|+|+.+ +.....-..++ ++.
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~~~~~~~~~~~l~el-l--~~sDvv~lh-~Plt~~T~~li~~~~ 218 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGKNKNEEYERVSLEEL-L--KTSDIISIH-APLNEKTKNLIAYKE 218 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCccccccCceeecHHHH-h--hcCCEEEEe-CCCCchhhcccCHHH
Confidence 567888898875 543333332 366 9999998643211 111122221 1 356888764 11111111222 455
Q ss_pred HhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 171 ERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 171 ~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
...+|||.+++ .+....--+.+.|.+.++.-++--.-||
T Consensus 219 ~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~AaLDV 257 (311)
T PRK08410 219 LKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIYAGLDV 257 (311)
T ss_pred HHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeEEEEec
Confidence 66789998876 7766665667778888886655433444
No 394
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=64.14 E-value=17 Score=31.12 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=52.9
Q ss_pred cccCCCCCeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCCCe----------EEEcC-CCCC-----CCCCCceeE
Q 027039 91 KSLLFNHSKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSLPL----------VSRAD-PHNL-----PFFDEAFDV 151 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------~~~~d-~~~~-----~~~~~~fD~ 151 (229)
...++++.+||=.|+ |.|..+..+++. |. ++++++.++...+ ++..+ ..+. ....+.+|+
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 345688999999986 346777777776 77 7888776544211 11111 0010 011246888
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+-.. . ...+.+..+.|+++|+++..
T Consensus 225 v~d~~-g-----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 225 YFDNV-G-----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEECC-C-----HHHHHHHHHHhccCcEEEEe
Confidence 87531 1 24567888999999998744
No 395
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=63.82 E-value=90 Score=26.36 Aligned_cols=115 Identities=16% Similarity=0.061 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCC-----CCCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHN-----LPFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~-----~~~~~~~fD~V~~~~ 156 (229)
+++.+ |..=||+=..+..+..... ++.++++-++ .+.+.++|... +|. .+.=-+|+..-
T Consensus 88 N~~~~-l~~YpGSP~lA~~llR~qD-Rl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~LPP-~erRglVLIDP 164 (279)
T COG2961 88 NPGGG-LRYYPGSPLLARQLLREQD-RLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHLPP-KERRGLVLIDP 164 (279)
T ss_pred CCCCC-cccCCCCHHHHHHHcchhc-eeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhCCC-CCcceEEEeCC
Confidence 55555 7778888777777766644 8888888776 23355666433 343 34455666542
Q ss_pred chhhh-CHHHHHHHHHhccc--cCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 157 LAEAL-FPSRFVGEMERTVK--IGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~Lk--pgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
-.+.- +...+++.+.+.+| ++|...+..+..+-...+.+.+-++..++-++-.++.
T Consensus 165 PfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL 223 (279)
T COG2961 165 PFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIEL 223 (279)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEE
Confidence 22222 56677777777776 6898888999887777777777777777766655543
No 396
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=63.77 E-value=11 Score=32.58 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcC
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~ 202 (229)
....++..+.+.|+|||++++++-..- +.+-++..|+..
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSL--EDRiVK~~f~~~ 256 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSL--EDRIVKNFFREL 256 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcH--HHHHHHHHHHHh
Confidence 357789999999999999986655422 334466667643
No 397
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=63.64 E-value=36 Score=26.39 Aligned_cols=85 Identities=11% Similarity=0.086 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCCCChhh-HHHHhC-CCCeEEEecCCCCCCe-EE------EcCCCCCCCCCCceeEEEcccchhhhCHHH
Q 027039 95 FNHSKVLCVSAGAGHEV-MAFNSI-GVADVTGVELMDSLPL-VS------RADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~-~~l~~~-g~~~v~~vD~s~~~~~-~~------~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~ 165 (229)
..+.+|.=.|+|+...+ ..+... +..-...+|.++...- +. ..+.+. +.+...|.|+.... .+..+
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~--l~~~~pd~vivlaw---~y~~E 140 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEE--LKERKPDYVIVLAW---NYKDE 140 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG----SS--SEEEES-G---GGHHH
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHH--HhhCCCCEEEEcCh---hhHHH
Confidence 46788999999986544 333333 2223456787766221 11 111112 22456788765322 23677
Q ss_pred HHHHHHhccccCcEEEEEe
Q 027039 166 FVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 166 ~l~~~~~~LkpgG~lil~~ 184 (229)
+++.+.+.++.||++++.+
T Consensus 141 I~~~~~~~~~~gg~fi~pl 159 (160)
T PF08484_consen 141 IIEKLREYLERGGKFIVPL 159 (160)
T ss_dssp HHHHTHHHHHTT-EEEE-S
T ss_pred HHHHHHHHHhcCCEEEEeC
Confidence 8888888999999988654
No 398
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=63.15 E-value=7.2 Score=29.26 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=53.3
Q ss_pred EEEEcCCC-C-hhhHHHHhCCCCeEEEecCCCC-------CCeEEEcC-------CCCC---CCCCCceeEEEcccchhh
Q 027039 100 VLCVSAGA-G-HEVMAFNSIGVADVTGVELMDS-------LPLVSRAD-------PHNL---PFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 100 vLDiG~G~-G-~~~~~l~~~g~~~v~~vD~s~~-------~~~~~~~d-------~~~~---~~~~~~fD~V~~~~~~~~ 160 (229)
|+=+|+|. | .++..|++.|. +|+.++-.+. .+.+...+ .... +.....+|+|+.. ...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~--vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA--VKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE---SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEE--ecc
Confidence 34566665 3 34444555565 7777776651 11121111 0001 1235789999974 222
Q ss_pred hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~ 201 (229)
....+.++.+.+.++|+..+++.... -...+.+.+.+..
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG--~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNG--MGNEEVLAEYFPR 116 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSS--SSHHHHHHCHSTG
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCC--CCcHHHHHHHcCC
Confidence 23577888999999999776644433 2234556666644
No 399
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=62.94 E-value=1.2e+02 Score=27.48 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=35.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHh----CCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~----~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
+++++||=.| |+|..+..+.+ .|+ +|+++|.... .++++.+|..+..+ ..+|+|+-.
T Consensus 118 ~~~mkILVTG-atGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~--~~~D~ViHl 191 (436)
T PLN02166 118 RKRLRIVVTG-GAGFVGSHLVDKLIGRGD-EVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPIL--LEVDQIYHL 191 (436)
T ss_pred cCCCEEEEEC-CccHHHHHHHHHHHHCCC-EEEEEeCCCCccHhHhhhhccCCceEEEECccccccc--cCCCEEEEC
Confidence 5678888877 56777766654 466 8999985321 23456666654322 357988754
No 400
>PRK13243 glyoxylate reductase; Reviewed
Probab=62.08 E-value=21 Score=31.16 Aligned_cols=108 Identities=8% Similarity=0.001 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCC-Ch-hhHHHHhCCCCeEEEecCCCCCCeEEEcCC--CCCCCCCCceeEEEcccchhhhCHHHHH-HHH
Q 027039 96 NHSKVLCVSAGA-GH-EVMAFNSIGVADVTGVELMDSLPLVSRADP--HNLPFFDEAFDVAFTAHLAEALFPSRFV-GEM 170 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~-~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~--~~~~~~~~~fD~V~~~~~~~~~~~~~~l-~~~ 170 (229)
.+.+|.=||.|. |. .+..+...|. +|.++|.++.......... .++.-.-...|+|+..- .....-..++ .+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l-P~t~~T~~~i~~~~ 226 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHV-PLTKETYHMINEER 226 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeC-CCChHHhhccCHHH
Confidence 467899999985 43 3344444476 8999998764321100001 11110013568888741 1100112222 456
Q ss_pred HhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE
Q 027039 171 ERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD 206 (229)
Q Consensus 171 ~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~ 206 (229)
...+|||..++ .+....--+.+.+.+.++.-++..
T Consensus 227 ~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~~g~i~g 261 (333)
T PRK13243 227 LKLMKPTAILV-NTARGKVVDTKALVKALKEGWIAG 261 (333)
T ss_pred HhcCCCCeEEE-ECcCchhcCHHHHHHHHHcCCeEE
Confidence 67788887766 666655556777888887766643
No 401
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=61.95 E-value=33 Score=29.05 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=63.7
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCeEE----------------EcCC---------CCC----CC-C
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVS----------------RADP---------HNL----PF-F 145 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~----------------~~d~---------~~~----~~-~ 145 (229)
.+|.=||+|. +..+..++..|+ +|+.+|.+++.++-. .+.. ..+ .. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence 4688899985 345555666687 999999987643200 0000 000 00 0
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeee
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVT 211 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~ 211 (229)
-...|+|+..-.........+++++.+.++|+..++ .........++.+.+. ..+++..+-+.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~---S~tsg~~~~~la~~~~~~~r~ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA---SNTSGIMIAEIATALERKDRFIGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE---EcCCCCCHHHHHhhcCCcccEEEEecCC
Confidence 134688876422221124667888888888876543 3333456777777664 56677776554
No 402
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=61.84 E-value=90 Score=26.71 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=49.3
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC-------CCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~V~~~~~ 157 (229)
++++.+||-.|+|. |..+..+++. |...|++++.++...+. ...+..+.. ...+.+|+++...-
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g 252 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVN 252 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCC
Confidence 35788898887653 5555555665 77678888766542110 011111111 11125788875221
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+.+..+.|+++|+++.+
T Consensus 253 -----~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 253 -----NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred -----CHHHHHHHHHHhhcCCeEEEE
Confidence 124578889999999998743
No 403
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=61.57 E-value=31 Score=30.07 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=51.5
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCCC--CC-----CCCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADPH--NL-----PFFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~~--~~-----~~~~~~fD~ 151 (229)
....++++.+||=.|+|. |..+..+++. |...+++++.++... .++...-. +. ....+.+|+
T Consensus 177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~ 256 (365)
T cd05279 177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDY 256 (365)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcE
Confidence 344567889998887754 4455555555 775688888655421 12111111 00 011246888
Q ss_pred EEcccchhhhCHHHHHHHHHhccc-cCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVK-IGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lil~ 183 (229)
|+... . ....+....+.++ ++|+++.+
T Consensus 257 vid~~-g----~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 257 AFEVI-G----SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred EEECC-C----CHHHHHHHHHHhccCCCEEEEE
Confidence 88531 1 1346677888899 99998754
No 404
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=59.97 E-value=35 Score=30.27 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCChh----hHHHHhC----CCCeEEEecCC
Q 027039 95 FNHSKVLCVSAGAGHE----VMAFNSI----GVADVTGVELM 128 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~----~~~l~~~----g~~~v~~vD~s 128 (229)
...-.|+|+|.|.|.- -.+|+.+ +.-++||++..
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~ 150 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPP 150 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCC
Confidence 4556899999999953 3445555 34589999984
No 405
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.84 E-value=10 Score=33.03 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=29.7
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCC
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDS 130 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~ 130 (229)
..++|+++.-+|.|. |.....-+.. |..+++|+|++++
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~ 228 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD 228 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH
Confidence 448899999999987 4444444444 8899999999988
No 406
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=59.84 E-value=31 Score=29.10 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=50.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEE-------EcCCCCCCCCCCceeEEEcccchhhh
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVS-------RADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~-------~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
...++++.+||=.|+|. |..+..+++. |. ++++++.+++..++. ..+.... ...+.+|+++...-
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~vid~~g---- 223 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEAE-SEGGGFDVVVEATG---- 223 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCcccc-ccCCCCCEEEECCC----
Confidence 34567889999887643 4444444554 77 688887765422210 1111111 23356888886311
Q ss_pred CHHHHHHHHHhccccCcEEEE
Q 027039 162 FPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil 182 (229)
....+..+.+.|+++|+++.
T Consensus 224 -~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 224 -SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred -ChHHHHHHHHHhhcCCEEEE
Confidence 13356777888999999885
No 407
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=59.31 E-value=21 Score=20.22 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027039 1 MERHVEALLRKISYGAITIATFTLVML 27 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 27 (229)
||-++--|+.-++++.++.+.+..+|+
T Consensus 1 MevN~lgfiAt~Lfi~iPt~FLlilYv 27 (35)
T PRK04989 1 MEVNDLGFVASLLFVLVPTVFLIILYI 27 (35)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 777777787777777777776666665
No 408
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=58.41 E-value=1.2e+02 Score=25.90 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=49.5
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----C-CCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----P-FFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~-~~~~~fD~V~~ 154 (229)
..+.++.+||=.|+|. |..+..+++. |...++++|.++.... ++...-.+. . .....+|+|+.
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 3457788888777643 3444445555 7447888877654211 111111110 0 12346898885
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.. . ....+..+.+.|+++|+++..
T Consensus 242 ~~-g----~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 242 AV-G----IPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CC-C----CHHHHHHHHHhccCCcEEEEe
Confidence 32 1 133577788999999998744
No 409
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=58.36 E-value=32 Score=28.76 Aligned_cols=36 Identities=3% Similarity=-0.046 Sum_probs=20.3
Q ss_pred CCCCeEEEEcCCCChhhHHHH---hC---CCCeEEEecCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFN---SI---GVADVTGVELMDS 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~---~~---g~~~v~~vD~s~~ 130 (229)
.-+..++|.||=.|..+..++ +. ...++.+.|.=+.
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG 114 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEG 114 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSS
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 457889999999997665443 21 2357888886544
No 410
>CHL00080 psbM photosystem II protein M
Probab=58.26 E-value=20 Score=20.10 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027039 1 MERHVEALLRKISYGAITIATFTLVML 27 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 27 (229)
||-++--|..-++++.++.+.+.++|+
T Consensus 1 MEvN~lgfiAt~LFi~iPt~FLlilyv 27 (34)
T CHL00080 1 MEVNILAFIATALFILVPTAFLLIIYV 27 (34)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhe
Confidence 677777777777777776666666654
No 411
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=58.25 E-value=21 Score=31.53 Aligned_cols=41 Identities=12% Similarity=-0.064 Sum_probs=30.5
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC-----C----CCeEEEecCCCC
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI-----G----VADVTGVELMDS 130 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-----g----~~~v~~vD~s~~ 130 (229)
+......+..++|+|+|.|.++..+... + ..++.-+++|+.
T Consensus 71 q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 71 QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 3333455678999999999988876533 1 458999999987
No 412
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=58.08 E-value=16 Score=31.49 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=27.1
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~ 201 (229)
....++..+...|+|||++++++-..- +.+-++..|+.
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSl--EDriVK~~f~~ 251 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSL--EDRIVKRFFRE 251 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcH--HHHHHHHHHHH
Confidence 357789999999999999986665532 33445666654
No 413
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.03 E-value=52 Score=26.23 Aligned_cols=90 Identities=16% Similarity=0.028 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCC---hhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCC-----C-----CCCce
Q 027039 96 NHSKVLCVSAGAG---HEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLP-----F-----FDEAF 149 (229)
Q Consensus 96 ~~~~vLDiG~G~G---~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~-----~-----~~~~f 149 (229)
.+.+||-.|++.| ..+..+++.|. +|++++.++. .+.++.+|..+.. + .-+..
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 3578999998653 23333445577 8888887654 2456677776532 0 01346
Q ss_pred eEEEcccchhh-------------h-----CHHHHHHHHHhccccCcEEEEEeec
Q 027039 150 DVAFTAHLAEA-------------L-----FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 150 D~V~~~~~~~~-------------~-----~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|.++.+.-... . -+..+++.+.+.++++|.++++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 87776531110 0 1233456666777888888766544
No 414
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=57.79 E-value=68 Score=31.19 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=70.1
Q ss_pred CCeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe-----------------------------EEEcCCCCCCCC
Q 027039 97 HSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL-----------------------------VSRADPHNLPFF 145 (229)
Q Consensus 97 ~~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~-----------------------------~~~~d~~~~~~~ 145 (229)
-.+|.-||+|+ +..+..++..|. +|+.+|.+++.++ -+.... ++. .
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~-~ 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SYA-G 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CHH-H
Confidence 34789999997 345555666688 9999999987221 011000 110 0
Q ss_pred CCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeecCCeeEEE
Q 027039 146 DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVNGSNMTRI 220 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~ 220 (229)
-...|+|+-. +.+-+ -..++++++.++++|+..+.-.++ ..+..++.+..+ ..+++..+-+ .+-..|+.+
T Consensus 390 ~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS---~l~i~~ia~~~~~p~r~ig~Hff-~P~~~~~lv 461 (714)
T TIGR02437 390 FDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTS---TISISLLAKALKRPENFCGMHFF-NPVHRMPLV 461 (714)
T ss_pred hcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCC---CCCHHHHHhhcCCcccEEEEecC-CCcccCceE
Confidence 1457888864 33333 468899999999999988543333 456666666554 4556655543 444444443
No 415
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=57.75 E-value=41 Score=28.75 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCCCCCC-----CCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADPHNLP-----FFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~~~~~-----~~~~~fD~V~~~~~ 157 (229)
..++.+||-.|+|. |..+..+++. |...+++++-++... .++..+..+.. ...+.+|+|+....
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g 240 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG 240 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC
Confidence 36788888877654 5565666665 654677776543311 11111111110 12346888886321
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+.++.+.|+++|+++..
T Consensus 241 -----~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 241 -----NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred -----CHHHHHHHHHHhccCCEEEEE
Confidence 123567778899999998754
No 416
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=57.58 E-value=84 Score=27.84 Aligned_cols=103 Identities=7% Similarity=0.045 Sum_probs=56.9
Q ss_pred CCCeEEEEc-CCC--ChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHh
Q 027039 96 NHSKVLCVS-AGA--GHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMER 172 (229)
Q Consensus 96 ~~~~vLDiG-~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~ 172 (229)
...+|.-|| .|. |.++..+...|+ .|+++|.++. .+..+. -...|+|+..--.. ...+++.++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~~------~~~~~~---~~~aDlVilavP~~--~~~~~~~~l~~ 164 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDDW------DRAEDI---LADAGMVIVSVPIH--LTEEVIARLPP 164 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCcc------hhHHHH---HhcCCEEEEeCcHH--HHHHHHHHHhC
Confidence 346788888 664 456666666676 8999997532 011111 13578888743222 13556677766
Q ss_pred ccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeec
Q 027039 173 TVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 173 ~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
++||..++ -+..-......++.+.+.. .|+..+-+.++
T Consensus 165 -l~~~~iv~-Dv~SvK~~~~~~~~~~~~~-~fvg~HPm~G~ 202 (374)
T PRK11199 165 -LPEDCILV-DLTSVKNAPLQAMLAAHSG-PVLGLHPMFGP 202 (374)
T ss_pred -CCCCcEEE-ECCCccHHHHHHHHHhCCC-CEEeeCCCCCC
Confidence 66655433 4433333344555544433 56766655554
No 417
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=57.21 E-value=84 Score=27.23 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=55.4
Q ss_pred HhcccCCCCCeEEEEcCCC--ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEE---cCCCC-C-CC-CCCcee
Q 027039 89 QGKSLLFNHSKVLCVSAGA--GHEVMAFNSI-GVADVTGVELMDSLP---------LVSR---ADPHN-L-PF-FDEAFD 150 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~---~d~~~-~-~~-~~~~fD 150 (229)
.....++++.+||=.|+.. |.++..|++. |. .++++--+++.. ..+. .|+.+ . .+ ....+|
T Consensus 135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred HHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCce
Confidence 3345578899999999655 5788888887 76 444444333311 1221 11111 1 11 223699
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecC
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+|+... -.+.+.+..+.|+++|+++.+-...
T Consensus 214 vv~D~v------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 214 VVLDTV------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EEEECC------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 998732 2345667888999999988665544
No 418
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=57.14 E-value=14 Score=29.31 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=26.2
Q ss_pred CceeEEEcccchhhhC-----HHHHHHHHHhccccCcEEEEEeec
Q 027039 147 EAFDVAFTAHLAEALF-----PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.||+||...+..... ....++.+.+.++.||-++++-+.
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~ 110 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIGGP 110 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-ST
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEeCh
Confidence 6899999986655444 677888888888889887755544
No 419
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=57.13 E-value=31 Score=20.11 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027039 6 EALLRKISYGAITIATFTLVML 27 (229)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~~~ 27 (229)
++|||-++...+++.++.++|-
T Consensus 9 R~lmN~ll~Gava~~a~~~lyP 30 (39)
T PF08802_consen 9 RQLMNLLLGGAVAVPAGGMLYP 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhhh
Confidence 6899999999988888877774
No 420
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=57.05 E-value=11 Score=32.56 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
....++..+..+|+|||++++++-. .-+.+-++..|+.....
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFH--SLEDRiVK~~f~~~~~~ 260 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFH--SLEDRIVKQFFRELAKS 260 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEec--chhhHHHHHHHHHhccc
Confidence 3577889999999999999866654 22345577778754443
No 421
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=57.02 E-value=63 Score=31.52 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=69.9
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe-------------EEEcCCC---------CCC----C-CCCc
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPH---------NLP----F-FDEA 148 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~-------------~~~~d~~---------~~~----~-~~~~ 148 (229)
.+|--||+|+ +..+..++..|+ +|+.+|.+++.++ ...+... .+. + .-..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 5799999997 344555566688 9999999987322 0001000 000 0 0135
Q ss_pred eeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeecCCeeEEEEE
Q 027039 149 FDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVNGSNMTRILM 222 (229)
Q Consensus 149 fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 222 (229)
.|+|+=. +.+-+ -..++++++.+.++|+..+.-.++ ..+..++.+..+ ..+++..+-+ .+-..|+.+-.
T Consensus 415 aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTS---sl~i~~la~~~~~p~r~ig~Hff-~P~~~m~LvEv 485 (737)
T TIGR02441 415 ADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTS---ALPIKDIAAVSSRPEKVIGMHYF-SPVDKMQLLEI 485 (737)
T ss_pred CCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCC---CCCHHHHHhhcCCccceEEEecc-CCcccCceEEE
Confidence 6777753 33333 468899999999999988553333 456666666554 3455555543 44444444433
No 422
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=56.80 E-value=59 Score=28.93 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=53.0
Q ss_pred ccCCCCCeEEEEc-CC-CChhhHHHHhC-C--CCeEEEecCCCCCCeE----------------EEcCCCC-CC------
Q 027039 92 SLLFNHSKVLCVS-AG-AGHEVMAFNSI-G--VADVTGVELMDSLPLV----------------SRADPHN-LP------ 143 (229)
Q Consensus 92 ~~~~~~~~vLDiG-~G-~G~~~~~l~~~-g--~~~v~~vD~s~~~~~~----------------~~~d~~~-~~------ 143 (229)
..++++.+|+=+| +| -|..+..++.. | ..+|+++|.++...++ ...+..+ ..
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHH
Confidence 3567889999997 35 37777777765 3 3479999987652210 1112211 00
Q ss_pred --CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 144 --FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 144 --~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.....+|+|+... . ....+....+.++++|.++++..
T Consensus 251 ~~t~g~g~D~vid~~-g----~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 251 ELTGGQGFDDVFVFV-P----VPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHhCCCCCCEEEEcC-C----CHHHHHHHHHHhccCCeEEEEEc
Confidence 1123588777521 1 13467778889999987765543
No 423
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=56.75 E-value=24 Score=19.73 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027039 1 MERHVEALLRKISYGAITIATFTLVML 27 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 27 (229)
||-++-.|+.-++++.++.+.+..+|+
T Consensus 1 MEvn~l~fiAt~Lfi~iPt~FLiilYv 27 (33)
T TIGR03038 1 MEVNILGFIATLLFILVPTVFLLILYI 27 (33)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 677777777777777777766666664
No 424
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=56.61 E-value=31 Score=29.53 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=48.6
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC--------e-EEEcCCCCC------CCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP--------L-VSRADPHNL------PFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~--------~-~~~~d~~~~------~~~~~~fD~V~~~~ 156 (229)
..++.+||-.|+|. |..+..++.. |...|++++-++... . ++.....++ ......+|+|+...
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 46788888777642 4555556665 763488886554311 1 111111110 01235689988642
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
. ....+.++.+.|+++|+++.+
T Consensus 239 g-----~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 239 G-----APKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred C-----CHHHHHHHHHhhcCCCEEEEE
Confidence 1 134577888999999998744
No 425
>PLN02256 arogenate dehydrogenase
Probab=56.34 E-value=30 Score=29.80 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe-----EE-EcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 95 FNHSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL-----VS-RADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 95 ~~~~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~-----~~-~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
..+.+|.=||+|. |.++..+.+.|. +|+++|.++.... +. ..+..+. .....|+|+..--.. ...++
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~~~~a~~~gv~~~~~~~e~--~~~~aDvVilavp~~--~~~~v 108 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDYSDIAAELGVSFFRDPDDF--CEEHPDVVLLCTSIL--STEAV 108 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccHHHHHHHcCCeeeCCHHHH--hhCCCCEEEEecCHH--HHHHH
Confidence 4567899999874 445555666675 8999998753100 10 0111111 123468888642111 13455
Q ss_pred HHHH-HhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeecC
Q 027039 167 VGEM-ERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVNG 214 (229)
Q Consensus 167 l~~~-~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~ 214 (229)
+.++ ...++||..+ +-+........+.+.+.+. ...++..+=..+..
T Consensus 109 l~~l~~~~l~~~~iv-iDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e 157 (304)
T PLN02256 109 LRSLPLQRLKRSTLF-VDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPE 157 (304)
T ss_pred HHhhhhhccCCCCEE-EecCCchHHHHHHHHHhCCCCCeEEecCCCCCCC
Confidence 6666 4557777643 3444433445666666664 34577777665543
No 426
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=55.89 E-value=43 Score=30.19 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCeEEEEcCCC-Ch-hhHHHHhCCCCeEEEecCCCCCCe--------EEEcC-------------CCC--CCCCCCceeE
Q 027039 97 HSKVLCVSAGA-GH-EVMAFNSIGVADVTGVELMDSLPL--------VSRAD-------------PHN--LPFFDEAFDV 151 (229)
Q Consensus 97 ~~~vLDiG~G~-G~-~~~~l~~~g~~~v~~vD~s~~~~~--------~~~~d-------------~~~--~~~~~~~fD~ 151 (229)
..+|--+|=|. |. .+.+++..|+ +|+|+|+++..++ ..+-+ +.. -+-.-...|+
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence 36677777665 43 3334455688 9999999987332 10111 000 0100124555
Q ss_pred EEcc---cchhhh-----CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc-CceeEeeee
Q 027039 152 AFTA---HLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT-SRFVDAANV 210 (229)
Q Consensus 152 V~~~---~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~-~~~~~~~~~ 210 (229)
++.. -+.... ....+.+.+.+.||+|-.+++--....+-..+-..-+... +++..-+++
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df 155 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF 155 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee
Confidence 5433 111211 2367889999999999987765444333333334444443 445444444
No 427
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=55.42 E-value=56 Score=25.65 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=59.9
Q ss_pred eEEEEcCCC-C-hhhHHHHhCCCCeEEEecCCCCCCe-------------------------------EEEcCCCCCCCC
Q 027039 99 KVLCVSAGA-G-HEVMAFNSIGVADVTGVELMDSLPL-------------------------------VSRADPHNLPFF 145 (229)
Q Consensus 99 ~vLDiG~G~-G-~~~~~l~~~g~~~v~~vD~s~~~~~-------------------------------~~~~d~~~~~~~ 145 (229)
+|.=||+|. | .++..++..|+ +|+.+|.+++..+ -...|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~--- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA--- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG---
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH---
Confidence 356678875 3 34444555587 9999999987221 122333332
Q ss_pred CCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeee
Q 027039 146 DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANV 210 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~ 210 (229)
...|+|+-.- .+.. -..++++++.+.+.|+-.+.-.++ ..+..++.+... ..+++..+-+
T Consensus 77 -~~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTS---sl~i~~la~~~~~p~R~ig~Hf~ 138 (180)
T PF02737_consen 77 -VDADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTS---SLSISELAAALSRPERFIGMHFF 138 (180)
T ss_dssp -CTESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--S---SS-HHHHHTTSSTGGGEEEEEE-
T ss_pred -hhhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCC---CCCHHHHHhccCcCceEEEEecc
Confidence 2678888642 3333 458899999999999998664444 456666665543 5677777765
No 428
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=55.29 E-value=21 Score=19.69 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027039 1 MERHVEALLRKISYGAITIATFTLVML 27 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 27 (229)
||-++-.|+.-++++.+..+.+..+|+
T Consensus 1 Mevn~l~fiAtaLfi~iPt~FLiilyv 27 (31)
T PF05151_consen 1 MEVNILAFIATALFILIPTAFLIILYV 27 (31)
T ss_dssp B---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHhheEe
Confidence 667777777777777777777777765
No 429
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=55.27 E-value=32 Score=29.74 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=33.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL 131 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~ 131 (229)
..+++...+|.--|.|-.+.++.+. +.++++|+|-++..
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~A 60 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQA 60 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHH
Confidence 5578899999999999999999888 35689999999873
No 430
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=55.08 E-value=33 Score=30.03 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcccCCCCCe--EEEEcCCCChhhHHHHhC-CCCeEEEecCCCC
Q 027039 80 SYAHFFKHLQGKSLLFNHSK--VLCVSAGAGHEVMAFNSI-GVADVTGVELMDS 130 (229)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~--vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~ 130 (229)
.|-+++.+|+.......+.. -+|||.|.-..--.+... ......++|+.+.
T Consensus 84 nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~ 137 (419)
T KOG2912|consen 84 NYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDM 137 (419)
T ss_pred hhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeecccc
Confidence 34567777766655444444 489999887655555444 2248889988876
No 431
>PLN02928 oxidoreductase family protein
Probab=55.04 E-value=32 Score=30.19 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCC-ChhhHH-HHhCCCCeEEEecCCCCCCeE-------------E--EcCCCCCCCCCCceeEEEcccch
Q 027039 96 NHSKVLCVSAGA-GHEVMA-FNSIGVADVTGVELMDSLPLV-------------S--RADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~-l~~~g~~~v~~vD~s~~~~~~-------------~--~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.+.++.=||.|. |..... +...|. +|+++|.+...... . .+...++.-.-...|+|+..- .
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l-P 235 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC-T 235 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC-C
Confidence 467899999885 543333 333477 99999986321110 0 011111110013578888741 1
Q ss_pred hhhCHHHHH-HHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE-eeeee
Q 027039 159 EALFPSRFV-GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD-AANVT 211 (229)
Q Consensus 159 ~~~~~~~~l-~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~ 211 (229)
....-..++ .+....+|||..++ .+....--+...|.+.++.-++.. .-|+.
T Consensus 236 lt~~T~~li~~~~l~~Mk~ga~lI-NvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 236 LTKETAGIVNDEFLSSMKKGALLV-NIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CChHhhcccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 100011222 46667788887655 666666667777888888766643 34453
No 432
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.96 E-value=1.3e+02 Score=25.49 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=50.0
Q ss_pred cccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCC-------CCeEEEcCCCCC-----CCCCCceeEEEcc
Q 027039 91 KSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDS-------LPLVSRADPHNL-----PFFDEAFDVAFTA 155 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~-------~~~~~~~d~~~~-----~~~~~~fD~V~~~ 155 (229)
...++++.+||=.|+ | -|..+..+++. |. ++++++.+.. .+..+....... ......+|+|+..
T Consensus 172 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 250 (350)
T cd08274 172 RAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADV 250 (350)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEec
Confidence 345678999999998 2 35666666666 76 6777764431 011111110000 0123468988863
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.- ...+..+.+.++++|.++.+
T Consensus 251 ~g------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 251 VG------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CC------HHHHHHHHHHhccCCEEEEe
Confidence 22 12567788999999998743
No 433
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=54.92 E-value=47 Score=29.79 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=39.0
Q ss_pred CeEEEEcCCC-ChhhHH-HHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCCC---CCCceeEEEcc
Q 027039 98 SKVLCVSAGA-GHEVMA-FNSIGVADVTGVELMDS-----------LPLVSRADPHNLPF---FDEAFDVAFTA 155 (229)
Q Consensus 98 ~~vLDiG~G~-G~~~~~-l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~~---~~~~fD~V~~~ 155 (229)
++||=||||. |..... +++.+..+|+..|.+.+ .++..+.|+.+.+- --..+|+|++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 5799999975 443333 35557579999999954 35577888887531 01345999875
No 434
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=54.69 E-value=60 Score=28.32 Aligned_cols=92 Identities=17% Similarity=0.074 Sum_probs=52.8
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE------EEcCCCCC-------CCCCCceeEEEcc
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV------SRADPHNL-------PFFDEAFDVAFTA 155 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~------~~~d~~~~-------~~~~~~fD~V~~~ 155 (229)
...++++.+||-.|+|. |..+..+++. |...++++|.++...+. ...+..+. .+..+.+|+++-.
T Consensus 171 ~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~~~d~v~d~ 250 (375)
T cd08282 171 LAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPGGVDRAVDC 250 (375)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCCCCCEEEEC
Confidence 34567888888888764 5555556655 75578888876542110 01122111 0112458888863
Q ss_pred cchhh------hCHHHHHHHHHhccccCcEEEE
Q 027039 156 HLAEA------LFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 156 ~~~~~------~~~~~~l~~~~~~LkpgG~lil 182 (229)
.-... ..+...+.+..+.++++|.+.+
T Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 251 VGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred CCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 11110 1234568888999999999853
No 435
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.50 E-value=11 Score=32.64 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=41.4
Q ss_pred EEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------eEEEcCCCCCCCC-CCceeEEEcc
Q 027039 100 VLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFF-DEAFDVAFTA 155 (229)
Q Consensus 100 vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------~~~~~d~~~~~~~-~~~fD~V~~~ 155 (229)
|+|+-||.|.....+.+.|+.-+.++|+++... .+..+|+.++... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEec
Confidence 589999999999999888986678899987521 3456777775421 1358999875
No 436
>PRK06932 glycerate dehydrogenase; Provisional
Probab=54.20 E-value=37 Score=29.31 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCC-ChhhHHHH-hCCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHH-HHHHh
Q 027039 96 NHSKVLCVSAGA-GHEVMAFN-SIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GEMER 172 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~-~~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l-~~~~~ 172 (229)
.|.+|.=||.|. |.....++ ..|. +|+++|...... . .....++.---..-|+|+.+ +.....-..++ .+...
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~~~~-~-~~~~~~l~ell~~sDiv~l~-~Plt~~T~~li~~~~l~ 221 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKGASV-C-REGYTPFEEVLKQADIVTLH-CPLTETTQNLINAETLA 221 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCcccc-c-ccccCCHHHHHHhCCEEEEc-CCCChHHhcccCHHHHH
Confidence 467899999885 54333333 3376 899998653211 0 00011111001357888864 11100111222 44556
Q ss_pred ccccCcEEEEEeecCCcccHHHHHHHHhcCceeE-eeeee
Q 027039 173 TVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD-AANVT 211 (229)
Q Consensus 173 ~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~ 211 (229)
.+|||..++ .+....--+...+.+.+++.++.. .-||.
T Consensus 222 ~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 222 LMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred hCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 678888766 777766667778888888766653 34443
No 437
>PRK10083 putative oxidoreductase; Provisional
Probab=53.83 E-value=31 Score=29.36 Aligned_cols=88 Identities=11% Similarity=0.076 Sum_probs=50.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHh-C-CCCeEEEecCCCCCCeE-------EEcCCCCCC----CC--CCceeEEEc
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-I-GVADVTGVELMDSLPLV-------SRADPHNLP----FF--DEAFDVAFT 154 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~-~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~----~~--~~~fD~V~~ 154 (229)
...++++.+||=.|+|. |..+..+++ . |...++++|.+++..+. ...+..+.. +. ...+|+|+.
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid 234 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIID 234 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEE
Confidence 34568899999999654 455555665 3 87678888876542110 001111110 01 112456664
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..- ....+.+..+.|+++|+++.+
T Consensus 235 ~~g-----~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 235 AAC-----HPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 211 123577888999999998854
No 438
>PLN02206 UDP-glucuronate decarboxylase
Probab=53.78 E-value=1.7e+02 Score=26.48 Aligned_cols=57 Identities=18% Similarity=0.056 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHh----CCCCeEEEecCCC-------------CCCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMD-------------SLPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~----~g~~~v~~vD~s~-------------~~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++||=.| |+|..+..+.. .|. +|+++|... ...+++.+|..+..+ ..+|.|+..
T Consensus 117 ~~~~kILVTG-atGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l--~~~D~ViHl 190 (442)
T PLN02206 117 RKGLRVVVTG-GAGFVGSHLVDRLMARGD-SVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPIL--LEVDQIYHL 190 (442)
T ss_pred cCCCEEEEEC-cccHHHHHHHHHHHHCcC-EEEEEeCCCccchhhhhhhccCCceEEEECCccChhh--cCCCEEEEe
Confidence 4668888776 56766666554 476 899887421 123466667655322 347888754
No 439
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=53.63 E-value=34 Score=32.44 Aligned_cols=83 Identities=13% Similarity=-0.071 Sum_probs=48.8
Q ss_pred CeEEEEcCCCChhhHHHH----hCCCCeEEEecCCCCC--------CeEEEcCCCCCC----CCCCceeEEEcccchhhh
Q 027039 98 SKVLCVSAGAGHEVMAFN----SIGVADVTGVELMDSL--------PLVSRADPHNLP----FFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~----~~g~~~v~~vD~s~~~--------~~~~~~d~~~~~----~~~~~fD~V~~~~~~~~~ 161 (229)
.+|+=+|+| ..+..++ +.+. +++.+|.+++. ..++.+|+.+.. ..-+..|.+++..-..
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~-- 475 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-- 475 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCH--
Confidence 456666665 5555444 3366 99999999873 348889988742 1224677777632111
Q ss_pred CHHHHHHHHHhccccCcEEEEEee
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.....+-...|.+.|..+++.-+.
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeC
Confidence 112233444566778888664443
No 440
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.33 E-value=49 Score=28.08 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=62.2
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe-------------E------------------EEcCCCCCCC
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL-------------V------------------SRADPHNLPF 144 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~-------------~------------------~~~d~~~~~~ 144 (229)
.+|-=||+|. +..+..++..|+ +|+..|.+++..+ . ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~--- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD--- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH---
Confidence 4788999986 345555666687 9999999987322 1 1111111
Q ss_pred CCCceeEEEcccchhhhCHHHHHHHHHhcc-ccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeee
Q 027039 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTV-KIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVT 211 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~~~~~l~~~~~~L-kpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~ 211 (229)
-...|+|+-.-.....-..+++.++.+.+ +|+..++-.++ ......+.+..+ ..+++.++-+.
T Consensus 82 -~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS---~~~~~~la~~~~~~~r~~g~hf~~ 146 (286)
T PRK07819 82 -FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS---SIPIMKLAAATKRPGRVLGLHFFN 146 (286)
T ss_pred -hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCC---CCCHHHHHhhcCCCccEEEEecCC
Confidence 13568888642222223567888888888 77766443233 344455555443 44555555443
No 441
>PLN02702 L-idonate 5-dehydrogenase
Probab=53.12 E-value=49 Score=28.64 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=50.9
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCC--CCC--------CCCCcee
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPH--NLP--------FFDEAFD 150 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~--~~~--------~~~~~fD 150 (229)
..+.++.+||-+|+|. |..+..++.. |...++++|.++...+ .+.-+.. +++ ...+.+|
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 256 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGID 256 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence 4457888999887653 5555556655 7766888887654211 1111111 110 1124588
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|+...- ....+.++.+.|+++|+++.+
T Consensus 257 ~vid~~g-----~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 257 VSFDCVG-----FNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred EEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 8875311 124578888999999997644
No 442
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=52.99 E-value=68 Score=27.12 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=61.6
Q ss_pred CCeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe------------EEE-cC--------------CCCCCCCCC
Q 027039 97 HSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL------------VSR-AD--------------PHNLPFFDE 147 (229)
Q Consensus 97 ~~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~------------~~~-~d--------------~~~~~~~~~ 147 (229)
-.+|.=||+|. ...+..++..|+ +|+.+|.+++..+ +.. +. ..+..-.-.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 35688889885 345555666676 9999999876432 100 00 000000013
Q ss_pred ceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc-CceeEeeeee
Q 027039 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT-SRFVDAANVT 211 (229)
Q Consensus 148 ~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~ 211 (229)
..|+|+..-.........+++++...++|+..++..+. .-+...+.+..+. .+++.++-+.
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS---~i~~~~l~~~~~~~~r~~g~h~~~ 144 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTS---SISITRLASATQRPQQVIGMHFMN 144 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCC---CCCHHHHHhhcCCCcceEEEeccC
Confidence 46888764221111245677888888888875432222 3356666766653 5666665543
No 443
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=52.83 E-value=51 Score=28.04 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=48.4
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC--------eEEEcCCCCCC------CCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP--------LVSRADPHNLP------FFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~--------~~~~~d~~~~~------~~~~~fD~V~~~~ 156 (229)
...++.+||=.|+|. |..+..++.. |...+++++.+++.. ..+..+-.+.. ...+.+|+++...
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~ 243 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAV 243 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 456788888887542 3444445555 755788886554311 11111111110 1234688888531
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
- ....+.+..+.++++|+++.+
T Consensus 244 ~-----~~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 244 G-----GAAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred C-----CHHHHHHHHHhcccCCEEEEE
Confidence 1 124577888899999997754
No 444
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=52.37 E-value=42 Score=30.19 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCC-Chh-hHHHHhCCCCeEEEecCCCCCCe--EEE-cCCCCCCCCCCceeEEEcccchhhhCHHHHH-HH
Q 027039 96 NHSKVLCVSAGA-GHE-VMAFNSIGVADVTGVELMDSLPL--VSR-ADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GE 169 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~-~~~l~~~g~~~v~~vD~s~~~~~--~~~-~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l-~~ 169 (229)
.|.+|.=||.|. |.. +..+...|. +|.+.|..+.... +.. .+..++ -...|+|..+ +.....-..++ .+
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~~~~~~~~~~~~~l~el---l~~sDiVslh-~Plt~~T~~li~~~ 224 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIEDKLPLGNARQVGSLEEL---LAQSDVVSLH-VPETPSTKNMIGAE 224 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCcccccCCceecCCHHHH---HhhCCEEEEc-CCCChHHhhccCHH
Confidence 467899999885 543 333333477 9999998643211 110 111111 1356888774 11111112233 45
Q ss_pred HHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 170 MERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 170 ~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
....+|||..++ .+....--+...+.+.++..++.
T Consensus 225 ~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 225 ELALMKPGAILI-NASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred HHhcCCCCeEEE-ECCCCcccCHHHHHHHHHcCCce
Confidence 667788887766 66666666677788888766654
No 445
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=52.33 E-value=9.2 Score=33.89 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCC---CCCCCCCceeEEEcccch-hhh
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPH---NLPFFDEAFDVAFTAHLA-EAL 161 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~---~~~~~~~~fD~V~~~~~~-~~~ 161 (229)
++.+|+=+|+|. |..+...+.. |. +|+.+|.++...+ .+..+.. ++.-.-..+|+|+..... ...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 456799999984 5555555554 87 8999998754211 1111111 111001468999974211 111
Q ss_pred CHHHHHHHHHhccccCcEEEEEe
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.|.-+-+++.+.+|||+.++-+.
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEe
Confidence 23212356667789998876443
No 446
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=52.18 E-value=25 Score=30.07 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCC-ChhhHHH-HhCCCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHHHHH
Q 027039 96 NHSKVLCVSAGA-GHEVMAF-NSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV 167 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l-~~~g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l 167 (229)
.+.+++=+|.|. |...... ...|. +|+.+|.++.... ....+..++.-.-..+|+|+... . +.-+-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~-p----~~~i~ 224 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI-P----ALVLT 224 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC-C----hhhhh
Confidence 588999999985 3333333 33386 9999998865221 11111111111124689999742 1 11233
Q ss_pred HHHHhccccCcEEEEEeecCCc
Q 027039 168 GEMERTVKIGGVCMVLMEECAG 189 (229)
Q Consensus 168 ~~~~~~LkpgG~lil~~~~~~~ 189 (229)
+++.+.++||+.++-+....+.
T Consensus 225 ~~~l~~~~~g~vIIDla~~pgg 246 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKPGG 246 (296)
T ss_pred HHHHHcCCCCcEEEEEccCCCC
Confidence 5667788999887755554443
No 447
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=52.01 E-value=40 Score=28.78 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------CCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~~~~~ 157 (229)
.++.+||-.|+|. |..+..++.. |...+++++.++...++ ...+..+.. .....+|+|+....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCC
Confidence 5778888877654 5566666665 76567777755542210 011111111 12346888875221
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
....+..+.+.|+++|.++..-
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 242 -----APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred -----CHHHHHHHHHHHhcCCEEEEEe
Confidence 1346777888999999987653
No 448
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=51.33 E-value=30 Score=30.18 Aligned_cols=106 Identities=8% Similarity=0.011 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCChhhHHHHhC--CC-CeEEEecCCCCCCeEEEcCCCCCCCC--CCceeEEEcccchhhhCHHHHH-HH
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI--GV-ADVTGVELMDSLPLVSRADPHNLPFF--DEAFDVAFTAHLAEALFPSRFV-GE 169 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~--g~-~~v~~vD~s~~~~~~~~~d~~~~~~~--~~~fD~V~~~~~~~~~~~~~~l-~~ 169 (229)
.|.++-=||-| ..+.+++++ ++ .+|...|.++.+-.-...+..-.++. -.+.|+|..+- ...-+...++ .+
T Consensus 145 ~gktvGIiG~G--rIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~-Plt~~T~hLin~~ 221 (324)
T COG1052 145 RGKTLGIIGLG--RIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHC-PLTPETRHLINAE 221 (324)
T ss_pred CCCEEEEECCC--HHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeC-CCChHHhhhcCHH
Confidence 46777777655 666666655 33 38999998875111111112222211 14678888751 1111122222 45
Q ss_pred HHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 170 MERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 170 ~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
....+|||+.++ -+....--+...+.+.++...+.
T Consensus 222 ~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 222 ELAKMKPGAILV-NTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred HHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCcc
Confidence 667789999876 66665555666677777655544
No 449
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=51.27 E-value=88 Score=25.92 Aligned_cols=88 Identities=22% Similarity=0.178 Sum_probs=47.0
Q ss_pred ccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCC-------CCe-EEEcCCCCC---CCCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDS-------LPL-VSRADPHNL---PFFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~-------~~~-~~~~d~~~~---~~~~~~fD~V~~~~~ 157 (229)
..+.++.+|+-.|+. .|.....++.. |. ++++++.+.. ... ++.....+. ....+.+|+|+...-
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 217 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCSTRNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVG 217 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCHHHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCC
Confidence 346789999999973 46666667766 77 7877764311 001 111110011 112356899886422
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.. .......+. .++++|.++.+.
T Consensus 218 ~~---~~~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 218 NS---PFSLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred ch---HHHHHHhhh-ccCCCCEEEEec
Confidence 11 122222222 399999988553
No 450
>PRK08818 prephenate dehydrogenase; Provisional
Probab=51.05 E-value=77 Score=28.20 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=58.3
Q ss_pred CCCeEEEEcC-CC--ChhhHHHHhC-CCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEccc-chhhhCHHHHHHHH
Q 027039 96 NHSKVLCVSA-GA--GHEVMAFNSI-GVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAH-LAEALFPSRFVGEM 170 (229)
Q Consensus 96 ~~~~vLDiG~-G~--G~~~~~l~~~-g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~-~~~~~~~~~~l~~~ 170 (229)
...+|.=||. |- |.++.++.+. +. +|+|+|.+.+. ..+..-.-...|+|+..- +.. ..++++++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~-~V~g~D~~d~~-------~~~~~~~v~~aDlVilavPv~~---~~~~l~~l 71 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQL-EVIGHDPADPG-------SLDPATLLQRADVLIFSAPIRH---TAALIEEY 71 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCC-EEEEEcCCccc-------cCCHHHHhcCCCEEEEeCCHHH---HHHHHHHH
Confidence 3467888998 74 6677777765 55 89999985321 111110113579998642 222 35566777
Q ss_pred Hhc---cccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecC
Q 027039 171 ERT---VKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 171 ~~~---LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
... |+||..+. =+..-+....+..... ..+|+..+-..+++
T Consensus 72 ~~~~~~l~~~~iVt-DVgSvK~~i~~~~~~~--~~~fVG~HPMaG~E 115 (370)
T PRK08818 72 VALAGGRAAGQLWL-DVTSIKQAPVAAMLAS--QAEVVGLHPMTAPP 115 (370)
T ss_pred hhhhcCCCCCeEEE-ECCCCcHHHHHHHHhc--CCCEEeeCCCCCCC
Confidence 665 67766633 2222222222333221 34688877777664
No 451
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=50.94 E-value=98 Score=30.10 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=69.9
Q ss_pred CeEEEEcCCC-C-hhhHHHHhCCCCeEEEecCCCCCCe-------------EEEcCC---------------CCCCCCCC
Q 027039 98 SKVLCVSAGA-G-HEVMAFNSIGVADVTGVELMDSLPL-------------VSRADP---------------HNLPFFDE 147 (229)
Q Consensus 98 ~~vLDiG~G~-G-~~~~~l~~~g~~~v~~vD~s~~~~~-------------~~~~d~---------------~~~~~~~~ 147 (229)
.+|.-||+|+ | ..+..++..|+ +|+.+|.+++.++ +..+.. .++. .-.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFE 391 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 5799999998 3 34555566687 9999999987321 000000 0000 013
Q ss_pred ceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeecCCeeEEEE
Q 027039 148 AFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVNGSNMTRIL 221 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~ 221 (229)
..|+|+=. +.+-+ -..++++++.+.++|+..+.- .....+..++.+..+ ..+++..+-+ .+-..++.+-
T Consensus 392 ~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilas---NTSsl~i~~la~~~~~p~r~~g~Hff-~P~~~~~lVE 462 (715)
T PRK11730 392 RVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILAS---NTSTISISLLAKALKRPENFCGMHFF-NPVHRMPLVE 462 (715)
T ss_pred CCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEE---cCCCCCHHHHHhhcCCCccEEEEecC-CcccccceEE
Confidence 57887753 33333 458899999999999987543 333456667776555 4556666544 4444444433
No 452
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=50.88 E-value=88 Score=26.67 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=49.9
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCC-CCC-----CCCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADP-HNL-----PFFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~-~~~-----~~~~~~fD~V~~ 154 (229)
..+.++.+||=.|+|. |..+..+++. |. ++++++.+++.. .++...- .+. .+..+.+|+++.
T Consensus 161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~ 239 (345)
T cd08260 161 ARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVD 239 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEE
Confidence 4457788999998643 4455555555 76 788887665421 1221111 111 011226888886
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.. . ....+....+.++++|+++.+
T Consensus 240 ~~-g----~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 240 AL-G----IPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred cC-C----CHHHHHHHHHHhhcCCEEEEe
Confidence 31 1 134567788899999997744
No 453
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=50.59 E-value=90 Score=25.76 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=49.3
Q ss_pred ccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~fD~V~ 153 (229)
..+.++.+|+-.||. .|..+..++.. |. +++.++.++...+ ....+..+.. .....+|+++
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 456788999999983 35555555655 76 7888877654221 1111111110 1224588887
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...- ...+..+.+.++++|.++.+
T Consensus 214 ~~~g------~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 214 DPVG------GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred ECcc------HHHHHHHHHhhccCCEEEEE
Confidence 6321 12455677888999987754
No 454
>PRK08265 short chain dehydrogenase; Provisional
Probab=49.87 E-value=84 Score=25.69 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCCC---hhhHHHHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCC-----C-----CCCceeE
Q 027039 96 NHSKVLCVSAGAG---HEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLP-----F-----FDEAFDV 151 (229)
Q Consensus 96 ~~~~vLDiG~G~G---~~~~~l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~-----~-----~~~~fD~ 151 (229)
.+.++|-.|++.| ..+..+++.|. +|+.+|.++. .+.++++|+.+.. + .-+..|+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 3567888886654 34444556687 8888887654 2446778876632 1 0146788
Q ss_pred EEcc
Q 027039 152 AFTA 155 (229)
Q Consensus 152 V~~~ 155 (229)
++.+
T Consensus 84 lv~~ 87 (261)
T PRK08265 84 LVNL 87 (261)
T ss_pred EEEC
Confidence 8876
No 455
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.78 E-value=1.3e+02 Score=26.10 Aligned_cols=119 Identities=12% Similarity=0.043 Sum_probs=67.8
Q ss_pred CCeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe------------EE-E----cC-CCCCC----CC--CCcee
Q 027039 97 HSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL------------VS-R----AD-PHNLP----FF--DEAFD 150 (229)
Q Consensus 97 ~~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~------------~~-~----~d-~~~~~----~~--~~~fD 150 (229)
-.+|.-||+|+ ..++..++..|+ +|+..|.+++..+ .. . .. ...+. +. -...|
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 36789999995 345556677788 9999999876221 00 0 00 00000 10 13567
Q ss_pred EEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc-CceeEeeeeeecCCeeEEEE
Q 027039 151 VAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT-SRFVDAANVTVNGSNMTRIL 221 (229)
Q Consensus 151 ~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~ 221 (229)
+|+-+ +.+-. -..++++++.+.++|+.. +..... .....++.+..+. .+++..+ .-++-..++.+-
T Consensus 86 lViEa-vpE~l~vK~~lf~~l~~~~~~~aI--laSnTS-~l~~s~la~~~~~p~R~~g~H-ffnP~~~~pLVE 153 (321)
T PRK07066 86 FIQES-APEREALKLELHERISRAAKPDAI--IASSTS-GLLPTDFYARATHPERCVVGH-PFNPVYLLPLVE 153 (321)
T ss_pred EEEEC-CcCCHHHHHHHHHHHHHhCCCCeE--EEECCC-ccCHHHHHHhcCCcccEEEEe-cCCccccCceEE
Confidence 77764 33333 357788999999999874 333333 4566667665553 4555544 334444444433
No 456
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=49.73 E-value=56 Score=28.38 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCC-ChhhHHHHh--CCCCeEEEecCCCCCCe-----EEEcCCCCCCCCCCceeEEEcccchhhhCHHHHH
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNS--IGVADVTGVELMDSLPL-----VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV 167 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~--~g~~~v~~vD~s~~~~~-----~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l 167 (229)
.+.++.=||.|. |......+. .|. +|.+.|....... ....+..++ -...|+|+.+ +.....-..++
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~~~~~~~~~~~~~~~l~el---l~~sDvv~lh-~plt~~T~~li 218 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRHHKEAEERFNARYCDLDTL---LQESDFVCII-LPLTDETHHLF 218 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCCchhhHHhcCcEecCHHHH---HHhCCEEEEe-CCCChHHhhcc
Confidence 467888999886 554443333 365 8888887642111 111122221 1467888874 11111112233
Q ss_pred -HHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe-eeee
Q 027039 168 -GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA-ANVT 211 (229)
Q Consensus 168 -~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~ 211 (229)
.+....+|||..++ .+....--+...|.+.+++.++... -||.
T Consensus 219 ~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf 263 (323)
T PRK15409 219 GAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQKGEIHAAGLDVF 263 (323)
T ss_pred CHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 44667789987766 7766665667778888887777543 4443
No 457
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.69 E-value=1.3e+02 Score=24.84 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=51.4
Q ss_pred ccCCCCCeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCCCCC-----CCCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADPHNL-----PFFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~~~~-----~~~~~~fD~V~~~ 155 (229)
..++++.+||=.|+ +.|..+..+++. |. +++++..+++. +..+..+..+. .. .+.+|+++..
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~ 215 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLEL 215 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEEC
Confidence 34578899998886 346777777776 76 78887766531 11111111110 12 3568888853
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.- ...+.+..+.++++|+++.+
T Consensus 216 ~~------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 216 VG------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CC------hHHHHHHHHHhccCCEEEEE
Confidence 21 23577788999999997643
No 458
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=49.56 E-value=64 Score=24.85 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=36.6
Q ss_pred HHhCCCCeEEEecCCCC-------CCeEEEcCCCCCCCC-CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 114 FNSIGVADVTGVELMDS-------LPLVSRADPHNLPFF-DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 114 l~~~g~~~v~~vD~s~~-------~~~~~~~d~~~~~~~-~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+...|. .|...+.-.. ...+..+|-...+.+ .+.+|++++.+ + ..+......|||||.+++-..
T Consensus 16 ~~~~G~-~v~~~~~ygs~~rGG~~~~~vris~~~~~~~~~~~~~Dilv~l~------~-~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 16 AAREGY-YVQSTPEYGSEIRGGPVVSHVRISDEPIIPSPPVGEADILVALD------P-EALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp HHHTTS-EEEEEEEEESSSSSSCEEEEEEEESS--SSSS-TSSESEEEESS------H-HHHHHCGTTCETTEEEEEETT
T ss_pred HHHcCC-CEEEEeCCChhhcCCeEEEEEEEecCcCccCcccCCCCEEEEcC------H-HHHHHHhcCcCcCeEEEEECC
Confidence 334465 6666543322 122444553133333 38999999842 3 334477788999999775544
Q ss_pred c
Q 027039 186 E 186 (229)
Q Consensus 186 ~ 186 (229)
.
T Consensus 88 ~ 88 (173)
T PF01558_consen 88 L 88 (173)
T ss_dssp T
T ss_pred C
Confidence 3
No 459
>PRK07806 short chain dehydrogenase; Provisional
Probab=49.52 E-value=1e+02 Score=24.73 Aligned_cols=88 Identities=9% Similarity=0.001 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCChhhHH----HHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCC-----CC-----C
Q 027039 96 NHSKVLCVSAGAGHEVMA----FNSIGVADVTGVELMDS---------------LPLVSRADPHNLP-----FF-----D 146 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~----l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~-----~~-----~ 146 (229)
.+.++|-.|++.| .+.. +++.|+ +|++++.+.. .+.++++|+.+.. +. -
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3568888887544 3333 445576 7887765432 1345677876632 00 1
Q ss_pred CceeEEEcccchh-h--------h-----CHHHHHHHHHhccccCcEEEEEee
Q 027039 147 EAFDVAFTAHLAE-A--------L-----FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 147 ~~fD~V~~~~~~~-~--------~-----~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+..|.++.+.... . . -+..+++.+.+.++.+|+++++.+
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3578877652110 0 0 134566777777776788776644
No 460
>PRK06436 glycerate dehydrogenase; Provisional
Probab=49.50 E-value=53 Score=28.27 Aligned_cols=104 Identities=10% Similarity=0.118 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCC-ChhhHHH-HhCCCCeEEEecCCCCCCeEE--EcCCCCCCCCCCceeEEEcccchhhhCHHHHH-HHH
Q 027039 96 NHSKVLCVSAGA-GHEVMAF-NSIGVADVTGVELMDSLPLVS--RADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GEM 170 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l-~~~g~~~v~~vD~s~~~~~~~--~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l-~~~ 170 (229)
.+.+|.=||.|. |.....+ ...|. +|+++|.+....... ..+..++ -...|+|+..- .....-..++ .+.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~~~~~~~~l~el---l~~aDiv~~~l-p~t~~T~~li~~~~ 195 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSYVNDGISSIYMEPEDI---MKKSDFVLISL-PLTDETRGMINSKM 195 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcccCcccccCCHHHH---HhhCCEEEECC-CCCchhhcCcCHHH
Confidence 467899999985 5433333 33377 999999864322111 1111111 13578888741 1100111122 455
Q ss_pred HhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 171 ERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 171 ~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
...+|||..++ .+.....-+...+.+.++..+..
T Consensus 196 l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~ 229 (303)
T PRK06436 196 LSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDK 229 (303)
T ss_pred HhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCce
Confidence 66688876544 67666666777788887765554
No 461
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=49.35 E-value=55 Score=29.46 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=54.9
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCeEEE--------cCCC----------CCC--CCCCceeEEEcc
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVSR--------ADPH----------NLP--FFDEAFDVAFTA 155 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~~--------~d~~----------~~~--~~~~~fD~V~~~ 155 (229)
.+|.=||.|. +..+..|++.|+ +|+++|.++..++-+. .+.. .+. ......|+|+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 5688888886 345555677787 9999999987433110 0000 000 001246888764
Q ss_pred -cch-------hhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh
Q 027039 156 -HLA-------EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (229)
Q Consensus 156 -~~~-------~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~ 200 (229)
... ........++.+.+.+++|-.++ ..+.-..-..+++...+.
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI-~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVI-LESTSPVGATEQMAEWLA 134 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEE-EeCCCCCCHHHHHHHHHH
Confidence 111 00123556678888888876654 444433334455554443
No 462
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=49.34 E-value=38 Score=29.48 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCChhhHHHHhC----CCCeEEEecCC-CCCCe----EEE-cCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI----GVADVTGVELM-DSLPL----VSR-ADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~----g~~~v~~vD~s-~~~~~----~~~-~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
+.+|-=||.| ..+..++++ |. +|.++|+. +.... ... .+.+++ -.+-|+|+++ +...-.-..+
T Consensus 142 gkTvGIiG~G--~IG~~va~~l~afgm-~v~~~d~~~~~~~~~~~~~~~~~~Ld~l---L~~sDiv~lh-~PlT~eT~g~ 214 (324)
T COG0111 142 GKTVGIIGLG--RIGRAVAKRLKAFGM-KVIGYDPYSPRERAGVDGVVGVDSLDEL---LAEADILTLH-LPLTPETRGL 214 (324)
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCC-eEEEECCCCchhhhccccceecccHHHH---HhhCCEEEEc-CCCCcchhcc
Confidence 6688888877 444444433 77 99999993 33221 111 112221 1467888874 1111112223
Q ss_pred H-HHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee-Eeeeee
Q 027039 167 V-GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV-DAANVT 211 (229)
Q Consensus 167 l-~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~ 211 (229)
+ .+....+|||.. ++.+....--+...|.+..+.-.+. -..||.
T Consensus 215 i~~~~~a~MK~gai-lIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf 260 (324)
T COG0111 215 INAEELAKMKPGAI-LINAARGGVVDEDALLAALDSGKIAGAALDVF 260 (324)
T ss_pred cCHHHHhhCCCCeE-EEECCCcceecHHHHHHHHHcCCcceEEecCC
Confidence 3 445567888884 4477776666777788888766555 344443
No 463
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=49.01 E-value=54 Score=33.76 Aligned_cols=88 Identities=11% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------CCeEEEcCCCCCCC-CCCceeEEEcccch------
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------LPLVSRADPHNLPF-FDEAFDVAFTAHLA------ 158 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------~~~~~~~d~~~~~~-~~~~fD~V~~~~~~------ 158 (229)
.+..+||+|+|+-. .-|.-. ....|+.+|.-|. .-++++.|...-.+ -...+|.+.|...+
T Consensus 822 ~~~~~lDLGTGPE~--RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~ 899 (1289)
T PF06016_consen 822 DPDHWLDLGTGPEC--RILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAAS 899 (1289)
T ss_dssp CC-CEEEET--TT---CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHH
T ss_pred CcceEEEccCCccc--eeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhc
Confidence 47899999888644 334434 3558999998776 23488999876443 34689999986221
Q ss_pred hhhCHHHHHHHHHhccccCc--EEEEEee
Q 027039 159 EALFPSRFVGEMERTVKIGG--VCMVLME 185 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG--~lil~~~ 185 (229)
...+..+.++++.+.+++.| ++++-..
T Consensus 900 a~~tl~~~l~~~l~~~~~~~~~~l~lQLN 928 (1289)
T PF06016_consen 900 ANVTLDAGLQQFLSQCVQANVKRLWLQLN 928 (1289)
T ss_dssp CT--HHHHHHHHHHHHHCTT-SEEEEE-B
T ss_pred CCCcHHHHHHHHHHHHHhCCccEEEEEec
Confidence 22256888999999888877 4554443
No 464
>PRK06701 short chain dehydrogenase; Provisional
Probab=48.57 E-value=61 Score=27.22 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCC---hhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCC-----CC-----CC
Q 027039 96 NHSKVLCVSAGAG---HEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLP-----FF-----DE 147 (229)
Q Consensus 96 ~~~~vLDiG~G~G---~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~-----~~-----~~ 147 (229)
.+.++|-.|++.| ..+..+++.|. +|+.++.++. .+.++.+|+.+.. +. -+
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678898887665 34444556676 7877766532 1346777876532 10 13
Q ss_pred ceeEEEcccchh----------------hh-----CHHHHHHHHHhccccCcEEEEEee
Q 027039 148 AFDVAFTAHLAE----------------AL-----FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 148 ~fD~V~~~~~~~----------------~~-----~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.+|+++.+.-.. .+ -+..+++.+.+.++++|.++++.+
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 678888652110 00 123445666676778888776654
No 465
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=48.20 E-value=27 Score=30.31 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=67.3
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------CeEEEcCCCCCCCC---CCceeEEEccc------c
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPFF---DEAFDVAFTAH------L 157 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------~~~~~~d~~~~~~~---~~~fD~V~~~~------~ 157 (229)
..+++|+=||.|.+...+...|+.-+.++|+++.. ..++..|+.+.... ...+|+++... +
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~ 82 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI 82 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence 46899999999999999988898788999999872 34666776654321 12789999861 1
Q ss_pred hh---hh-CHH----HHHHHHHhccccCcEEEEEeec------CCcccHHHHHHHHhcCcee
Q 027039 158 AE---AL-FPS----RFVGEMERTVKIGGVCMVLMEE------CAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 158 ~~---~~-~~~----~~l~~~~~~LkpgG~lil~~~~------~~~~~~~~l~~l~~~~~~~ 205 (229)
.. .. ++. --+.++...++| .++ +.+. ......+.+.+.++..+..
T Consensus 83 aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~f-v~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 83 AGKRRGYDDPRGSLFLEFIRLIEQLRP--KFF-VLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred cCcccCCcCccceeeHHHHHHHHhhCC--CEE-EEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 10 11 232 223556667788 322 3322 1233566777777766663
No 466
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=47.96 E-value=1.2e+02 Score=25.70 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=50.3
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC--------e-EEEcCCCCC----C--CCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP--------L-VSRADPHNL----P--FFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~--------~-~~~~d~~~~----~--~~~~~fD~V~~ 154 (229)
..++++..||=.|+|. |..+..+++. |...+++++.++... . ++...-.+. . ..+..+|+++.
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~ 243 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLE 243 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEE
Confidence 3456778887777653 5555556665 775688988765311 1 111110010 0 12335788775
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.. .....+..+.+.++++|.++..
T Consensus 244 ~~-----g~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 244 CV-----GTQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CC-----CCHHHHHHHHHhhccCCEEEEe
Confidence 21 1234678889999999998744
No 467
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=47.94 E-value=1.1e+02 Score=26.03 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=49.5
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCC---------CCCCCCcee
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHN---------LPFFDEAFD 150 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~---------~~~~~~~fD 150 (229)
...++++.+||=.|+|. |..+..++.. |...+++++.++.... ++..+-.+ .....+.+|
T Consensus 156 ~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d 235 (341)
T cd08262 156 RARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPA 235 (341)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCC
Confidence 34567889998887542 3444445554 7756888776544111 11111110 001234588
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+++... . ....+.+..+.++++|+++.+.
T Consensus 236 ~vid~~-g----~~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 236 VIFECV-G----APGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred EEEECC-C----CHHHHHHHHHHhccCCEEEEEC
Confidence 887531 1 1135677788899999987553
No 468
>PRK07574 formate dehydrogenase; Provisional
Probab=47.80 E-value=56 Score=29.24 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCC-Chh-hHHHHhCCCCeEEEecCCCCCCeEE-------EcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 96 NHSKVLCVSAGA-GHE-VMAFNSIGVADVTGVELMDSLPLVS-------RADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~-~~~l~~~g~~~v~~vD~s~~~~~~~-------~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
.+++|.=||.|. |.. +..+...|. +|.+.|.+....+.. ..+.+++ -...|+|+.+- .....-..+
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~~~l~el---l~~aDvV~l~l-Plt~~T~~l 265 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYHVSFDSL---VSVCDVVTIHC-PLHPETEHL 265 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceecCCHHHH---hhcCCEEEEcC-CCCHHHHHH
Confidence 456788888885 533 333344476 999999876322211 1111111 14578888741 111111223
Q ss_pred H-HHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 167 V-GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 167 l-~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
+ ++....+|+|..++ .+....--+...+.+.++.-++.
T Consensus 266 i~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 266 FDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred hCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHHhCCcc
Confidence 3 45667789887655 66665555667788877766654
No 469
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=47.72 E-value=81 Score=27.05 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=49.2
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC--------eEEEcCCCCCC-------C-CCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP--------LVSRADPHNLP-------F-FDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~--------~~~~~d~~~~~-------~-~~~~fD~V~ 153 (229)
..++++.+||=.|+|. |..+..++.. |...++++|.++... +.+ .+..+.. . ....+|+++
T Consensus 170 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~~~~~vdvvl 248 (350)
T cd08256 170 ANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVV-LNPPEVDVVEKIKELTGGYGCDIYI 248 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEE-ecCCCcCHHHHHHHHhCCCCCCEEE
Confidence 4457788887766543 4444555555 776788888765421 111 1111111 1 123588887
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
... . ....+.++.+.++++|+++.+
T Consensus 249 d~~-g----~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 249 EAT-G----HPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred ECC-C----ChHHHHHHHHHhhcCCEEEEE
Confidence 531 1 123577788999999998754
No 470
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=47.20 E-value=99 Score=26.58 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=55.4
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCC-------CeEEEcC------------CCCCCCCCCceeEEEccc
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSL-------PLVSRAD------------PHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~-------~~~~~~d------------~~~~~~~~~~fD~V~~~~ 156 (229)
++|.=||+|. +.++..+++.|+ +|+.+|.++.. ..+...+ ....+-....+|+|+..-
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 4688888885 356666667787 89999876421 1110000 000011124688888642
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
......++++++...++++..++.. .. +-...+.+.+.+.....
T Consensus 82 --k~~~~~~~~~~l~~~~~~~~iii~~-~n-G~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 82 --KSAATADAAAALAGHARPGAVVVSF-QN-GVRNADVLRAALPGATV 125 (341)
T ss_pred --cCcchHHHHHHHHhhCCCCCEEEEe-CC-CCCcHHHHHHhCCCCcE
Confidence 1112356778888888777654433 22 22234556677765443
No 471
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.19 E-value=1.5e+02 Score=23.79 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----CCeEEEcCCCC-CCCC---CCceeEEEcc--cchhhhC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRADPHN-LPFF---DEAFDVAFTA--HLAEALF 162 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----~~~~~~~d~~~-~~~~---~~~fD~V~~~--~~~~~~~ 162 (229)
..+.+|.+|.|-+=..-....+. |.-+|+..+.+.. .-+|+.-|.+. ..++ .+.||+|++. ++.. -=
T Consensus 72 ~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~-eC 150 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYGTEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSE-EC 150 (217)
T ss_pred ccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhccceeEEeccCCCCCCHHHHHhcccEEEeCCccccc-hh
Confidence 56789999999875533333332 5557888877654 34577777655 2232 3579999985 2211 11
Q ss_pred HHHHHHHHHhccccCcEEEEEeecC
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
..+.-.-+.++.|++-++++++++-
T Consensus 151 l~Kts~tik~L~r~~~kvilCtGei 175 (217)
T KOG3350|consen 151 LAKTSETIKRLQRNQKKVILCTGEI 175 (217)
T ss_pred hhhhHHHHHHHhcCCceEEEechhH
Confidence 2445566778889989999888863
No 472
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=47.17 E-value=25 Score=30.44 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
+..+.+|.-||+|.......++..|. +|.++|+++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~a 96 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPA 96 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHH
Confidence 37788999999998877777887787 9999999987
No 473
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=46.34 E-value=48 Score=28.24 Aligned_cols=110 Identities=11% Similarity=0.152 Sum_probs=56.6
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCC-CeEEEecCCCCCCeEEE-cC-----CCCCCCCCCceeEEEcccchhhhCHHHHHH
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGV-ADVTGVELMDSLPLVSR-AD-----PHNLPFFDEAFDVAFTAHLAEALFPSRFVG 168 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~-~~v~~vD~s~~~~~~~~-~d-----~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~ 168 (229)
.+|.=||+|. +.++..+...|. .+|+++|.+++..+... .. ..+..-.-...|+|+..--.. ...+++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~--~~~~v~~ 84 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG--ASGAVAA 84 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH--HHHHHHH
Confidence 5788999886 345555655563 38999999865222100 00 011110113579888743211 1245667
Q ss_pred HHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeee
Q 027039 169 EMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANV 210 (229)
Q Consensus 169 ~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~ 210 (229)
++...+++|+.++ .+........+.+.+.+. ..+++..+-+
T Consensus 85 ~l~~~l~~~~iv~-dvgs~k~~~~~~~~~~~~~~~~~v~~hPm 126 (307)
T PRK07502 85 EIAPHLKPGAIVT-DVGSVKASVIAAMAPHLPEGVHFIPGHPL 126 (307)
T ss_pred HHHhhCCCCCEEE-eCccchHHHHHHHHHhCCCCCeEEeCCCC
Confidence 7777888887654 333322223333333332 2245555444
No 474
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=46.16 E-value=1.6e+02 Score=24.62 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
-.+.-|.+||.|.|..+..+.+.|..+...++.++.
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~R 84 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTR 84 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccc
Confidence 345679999999999999999988777777877765
No 475
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=45.87 E-value=39 Score=31.49 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCC-Ch-hhHHHHhCCCCeEEEecCCCCCCe-----EEEcCCCCCCCCCCceeEEEcccchhhhCHHHHH-
Q 027039 96 NHSKVLCVSAGA-GH-EVMAFNSIGVADVTGVELMDSLPL-----VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV- 167 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~-~~~~l~~~g~~~v~~vD~s~~~~~-----~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l- 167 (229)
.+.+|.=||.|. |. .+..+...|. +|.++|....... +...+..++ -...|+|+..- .....-..++
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~g~~~~~l~el---l~~aDiV~l~l-P~t~~t~~li~ 213 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPYISPERAAQLGVELVSLDEL---LARADFITLHT-PLTPETRGLIG 213 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCChhHHHhcCCEEEcHHHH---HhhCCEEEEcc-CCChHhhcCcC
Confidence 467899999885 33 3333444476 9999998543111 111122221 13568888741 1100112223
Q ss_pred HHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 168 GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 168 ~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
.+....+|||..++ .+....--+...+.+.+++-++.
T Consensus 214 ~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 214 AEELAKMKPGVRII-NCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred HHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHhcCCee
Confidence 45677789987765 66665656677788888876664
No 476
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=45.79 E-value=35 Score=17.83 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027039 7 ALLRKISYGAITIAT 21 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (229)
.+|+|+.+.++++..
T Consensus 5 ~mmKkil~~l~a~~~ 19 (25)
T PF08139_consen 5 SMMKKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578888888765544
No 477
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=45.78 E-value=15 Score=31.30 Aligned_cols=84 Identities=14% Similarity=0.040 Sum_probs=45.4
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCeEEEcC---------------C---CCCCCCCCceeEEEcccc
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVSRAD---------------P---HNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d---------------~---~~~~~~~~~fD~V~~~~~ 157 (229)
++|.=||+|. +..+..+++.|+ +|+.+|.++...+-+... . .+..-.-...|+|+..--
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 3677888875 344555556676 899998876522200000 0 000000135688886422
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.. ...+++.++...++++..++.+.
T Consensus 81 ~~--~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 81 SQ--ALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred HH--HHHHHHHHHHhhcCCCCEEEEEe
Confidence 21 24566677777788876655443
No 478
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=45.73 E-value=8.2 Score=27.23 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=10.7
Q ss_pred EEEEcCCCChhhHH
Q 027039 100 VLCVSAGAGHEVMA 113 (229)
Q Consensus 100 vLDiG~G~G~~~~~ 113 (229)
=+|||||.|..-.+
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 36999999976544
No 479
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.58 E-value=63 Score=28.39 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=46.4
Q ss_pred CeEEEEcCCC-Ch-hhHHHHhCCCCeEEEecCCCCC-----------------------------------CeEEEcCCC
Q 027039 98 SKVLCVSAGA-GH-EVMAFNSIGVADVTGVELMDSL-----------------------------------PLVSRADPH 140 (229)
Q Consensus 98 ~~vLDiG~G~-G~-~~~~l~~~g~~~v~~vD~s~~~-----------------------------------~~~~~~d~~ 140 (229)
.+||-||+|. |. ...-|+-.|+.++-.+|.+.-. +..+..+++
T Consensus 41 ~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIq 120 (422)
T KOG2015|consen 41 CKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQ 120 (422)
T ss_pred CcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecchh
Confidence 7999999985 43 3334555588788777766430 114455566
Q ss_pred CCCC-CCCceeEEEcccchhhhCHHHHHHHHHhccccCc
Q 027039 141 NLPF-FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178 (229)
Q Consensus 141 ~~~~-~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG 178 (229)
+.|. .-..||+|+|. .....+...+..+.-.++-.|
T Consensus 121 d~~~~FYk~F~~iicG--LDsIeaRRwIN~mL~~l~~~g 157 (422)
T KOG2015|consen 121 DKPISFYKRFDLIICG--LDSIEARRWINGMLVRLKLEG 157 (422)
T ss_pred cCCHHHHhhhceEEec--ccchhHHHHHHHHHHHHHhcc
Confidence 6551 13689999994 222235555655554444334
No 480
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.52 E-value=60 Score=28.95 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHHHHHhcccCC-CCCeEEEEcCCCChhhHHHHhC-CCCeEEE---ecCCCC
Q 027039 84 FFKHLQGKSLLF-NHSKVLCVSAGAGHEVMAFNSI-GVADVTG---VELMDS 130 (229)
Q Consensus 84 ~~~~l~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~---vD~s~~ 130 (229)
++.++-....+. ++....++|||-|.++..++.. +...++- +|-...
T Consensus 169 llg~lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~ 220 (420)
T KOG2811|consen 169 LLGHLEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSS 220 (420)
T ss_pred HHhHHHhccccCCCcceEEEecCCchHHHHHHHHHhccccEEEEEeecccch
Confidence 333333334444 3478999999999999999876 5556655 665543
No 481
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.44 E-value=33 Score=29.28 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=58.5
Q ss_pred CCeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCeEEEc----------------------CC-CCCCCCCCceeE
Q 027039 97 HSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVSRA----------------------DP-HNLPFFDEAFDV 151 (229)
Q Consensus 97 ~~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~----------------------d~-~~~~~~~~~fD~ 151 (229)
-.+|.=||+|. +..+..++..|+ +|+.+|.+++..+-... .. .+..-.-...|+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 35788899985 345555666676 89999987753220000 00 011000135688
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeee
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANV 210 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~ 210 (229)
|+..-.........++.++...++++..++ ... ...+..++.+.+. ..+++.++-+
T Consensus 83 Vi~av~~~~~~~~~v~~~l~~~~~~~~ii~--s~t-sg~~~~~l~~~~~~~~~~ig~h~~ 139 (311)
T PRK06130 83 VIEAVPEKLELKRDVFARLDGLCDPDTIFA--TNT-SGLPITAIAQAVTRPERFVGTHFF 139 (311)
T ss_pred EEEeccCcHHHHHHHHHHHHHhCCCCcEEE--ECC-CCCCHHHHHhhcCCcccEEEEccC
Confidence 887422221123556777777776655432 222 2334566666654 4556666543
No 482
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=45.38 E-value=22 Score=21.54 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027039 1 MERHVEALLRKISYGAITIATFTLVML 27 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 27 (229)
||-++--|+.-++++.+..+.+.++|+
T Consensus 1 MEVN~lgfiAtaLFi~iPT~FLlilYV 27 (50)
T PRK14094 1 METTNFGFVASLLFVGVPTIFLIGLFI 27 (50)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhheeE
Confidence 777777777777777666666666554
No 483
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=45.25 E-value=36 Score=29.70 Aligned_cols=89 Identities=12% Similarity=0.215 Sum_probs=53.3
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCC--CC-------CCCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHN--LP-------FFDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~--~~-------~~~~~fD~V 152 (229)
...++++.+||=.|+|. |..+..+++. |..+|+++|.+++..++ ...|..+ .+ ..++.+|+|
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~v 259 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYS 259 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEE
Confidence 34568899999999865 6666667766 76579999887653221 0011111 00 112357887
Q ss_pred EcccchhhhCHHHHHHHHHhccccC-cEEEEEe
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVLM 184 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~~ 184 (229)
+-.. . -...+.+..+.+++| |+++++-
T Consensus 260 id~~-G----~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 260 FECI-G----NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred EECC-C----CHHHHHHHHHHhhcCCCeEEEEe
Confidence 7521 1 133567777889886 9877543
No 484
>PRK07877 hypothetical protein; Provisional
Probab=45.09 E-value=37 Score=33.06 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCChhhH-HHHhCCC-CeEEEecCCC
Q 027039 96 NHSKVLCVSAGAGHEVM-AFNSIGV-ADVTGVELMD 129 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~-~l~~~g~-~~v~~vD~s~ 129 (229)
...+|+=+|||-|.... .|+..|. ++++.+|.+.
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCE
Confidence 57899999999886544 4566684 9999999764
No 485
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.80 E-value=31 Score=29.14 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=57.2
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe------------------EEEcC-----------CCCCCCCC
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL------------------VSRAD-----------PHNLPFFD 146 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~------------------~~~~d-----------~~~~~~~~ 146 (229)
.+|.=||+|. +..+..++..|. +|+.+|.+++.++ ....+ ..++.-.-
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 4688889885 234455556677 9999999875221 00000 01111001
Q ss_pred CceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEee
Q 027039 147 EAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAA 208 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~ 208 (229)
...|+|+..- .+.. ...++++++...++++-.+....+ .....++.+..+ ..+++..+
T Consensus 83 ~~aDlVieav-pe~~~~k~~~~~~l~~~~~~~~ii~sntS---t~~~~~~~~~~~~~~r~vg~H 142 (287)
T PRK08293 83 KDADLVIEAV-PEDPEIKGDFYEELAKVAPEKTIFATNSS---TLLPSQFAEATGRPEKFLALH 142 (287)
T ss_pred cCCCEEEEec-cCCHHHHHHHHHHHHhhCCCCCEEEECcc---cCCHHHHHhhcCCcccEEEEc
Confidence 3568887642 2222 346778888888877765432222 234555555544 34566654
No 486
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=44.74 E-value=34 Score=29.16 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=51.6
Q ss_pred eEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCeEEE-------cCCCCCCCCCCceeEEEcccchhhhCHHHHHHH
Q 027039 99 KVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVSR-------ADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGE 169 (229)
Q Consensus 99 ~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~~-------~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~ 169 (229)
+|-=||+|. +..+..+++.|+ +|++.|.+++..+-.. .+..++.-.....|+|+..- ... .-.+++++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~v-p~~-~~~~v~~~ 78 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMV-PHG-IVDAVLEE 78 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEc-Cch-HHHHHHHH
Confidence 466678875 234555566676 8999998876332111 11111100012458888642 111 24556678
Q ss_pred HHhccccCcEEEEEeecCCcccHHHHHHHHhc
Q 027039 170 MERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (229)
Q Consensus 170 ~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~ 201 (229)
+...+++|-. ++........+..++.+....
T Consensus 79 l~~~l~~g~i-vid~st~~~~~t~~~~~~~~~ 109 (298)
T TIGR00872 79 LAPTLEKGDI-VIDGGNSYYKDSLRRYKLLKE 109 (298)
T ss_pred HHhhCCCCCE-EEECCCCCcccHHHHHHHHHh
Confidence 8888888754 334444333344444444443
No 487
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=44.57 E-value=1.7e+02 Score=28.45 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=68.9
Q ss_pred CCeEEEEcCCC-C-hhhHHHH-hCCCCeEEEecCCCCCCe-------------EEEcCC---------------CCCCCC
Q 027039 97 HSKVLCVSAGA-G-HEVMAFN-SIGVADVTGVELMDSLPL-------------VSRADP---------------HNLPFF 145 (229)
Q Consensus 97 ~~~vLDiG~G~-G-~~~~~l~-~~g~~~v~~vD~s~~~~~-------------~~~~d~---------------~~~~~~ 145 (229)
-.+|.-||+|+ | ..+..++ ..|+ +|+..|.+++.++ ...+.. .++. .
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR-G 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-H
Confidence 46799999998 3 4555556 4487 9999999876221 000000 0011 0
Q ss_pred CCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeecCCeeEE
Q 027039 146 DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVNGSNMTR 219 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~ 219 (229)
-...|+|+=. +.+-. -..++++++.+.++|+..+. ......+..++.+..+ ..+++.++-+ .+-..++.
T Consensus 387 ~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ila---snTS~l~i~~la~~~~~p~r~ig~Hff-~P~~~~~l 457 (708)
T PRK11154 387 FKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFA---SNTSSLPIGQIAAAAARPEQVIGLHYF-SPVEKMPL 457 (708)
T ss_pred hccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEE---ECCCCCCHHHHHHhcCcccceEEEecC-CccccCce
Confidence 1357777753 33333 35889999999999998854 3333556667766544 4566666654 34333333
No 488
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=44.39 E-value=21 Score=30.28 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=66.4
Q ss_pred eEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------eEEEcCCCCCC---CCCCceeEEEccc------ch---
Q 027039 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------LVSRADPHNLP---FFDEAFDVAFTAH------LA--- 158 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------~~~~~d~~~~~---~~~~~fD~V~~~~------~~--- 158 (229)
+++|+=||.|.+...+.+.|+..+.++|+++... ....+|+.++. ++. .+|+++... ..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~ 80 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKR 80 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccccccccccccc-cceEEEeccCCceEeccccc
Confidence 7899999999999999999988899999998721 67778888764 333 599999861 11
Q ss_pred hhh-CH----HHHHHHHHhccccCcEEEEEeecC----CcccHHHHHHHHhcCc
Q 027039 159 EAL-FP----SRFVGEMERTVKIGGVCMVLMEEC----AGREIKQIVELFRTSR 203 (229)
Q Consensus 159 ~~~-~~----~~~l~~~~~~LkpgG~lil~~~~~----~~~~~~~l~~l~~~~~ 203 (229)
... ++ ..-+-++.+.++|.-.++=-|..- ....+..+.+.+.+.+
T Consensus 81 ~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lG 134 (335)
T PF00145_consen 81 KGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELG 134 (335)
T ss_dssp HCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTT
T ss_pred cccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccc
Confidence 111 22 222344555678876655334331 1234677777787666
No 489
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.32 E-value=32 Score=27.88 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=42.6
Q ss_pred CCCCeEEEEcCC-CChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCC---CCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAG-AGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHN---LPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G-~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~---~~~~~~~fD~V~~~ 155 (229)
..+..+|-+|.= +|.+...+.... .+|+.+|+.|.+-.+...++.- +.+..+.+|+|+--
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~-~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~~DlivDl 106 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKA-DKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGEVDLIVDL 106 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhccc-ceEEEecCCHHHHhcCCCCccHhhhcCCCCCceeEEEec
Confidence 567889999976 466666555554 4999999999865555554432 44667889999864
No 490
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=43.32 E-value=26 Score=30.01 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=38.2
Q ss_pred CCceeEEEccc-chhhhCHHHHHHHHHhccccCcEEEEEeecC----Ccc----cHHHHHHHHhcCceeEeee
Q 027039 146 DEAFDVAFTAH-LAEALFPSRFVGEMERTVKIGGVCMVLMEEC----AGR----EIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 146 ~~~fD~V~~~~-~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~----~~~----~~~~l~~l~~~~~~~~~~~ 209 (229)
.+.||+|+..+ ..+.+.|. +.++++|||.+++-+... ..+ -...+.++.+..++..+.+
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccccc
Confidence 57899999764 44444665 777889999988766421 111 2345667777777766554
No 491
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=41.86 E-value=42 Score=27.43 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=36.8
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCC----------CeEEEcCCCCCC----CCCCceeEEEcc
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLP----FFDEAFDVAFTA 155 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~----------~~~~~~d~~~~~----~~~~~fD~V~~~ 155 (229)
++++=+|||. +..+..|.+.|+ +|+.+|.+++. ...+++|..+.. ..-..+|++++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 3577788884 234444555577 99999998772 236677776632 223568888774
No 492
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=41.56 E-value=29 Score=33.24 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCC-Ch-hhHHHHhCCCCeEEEecCCC
Q 027039 96 NHSKVLCVSAGA-GH-EVMAFNSIGVADVTGVELMD 129 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~-~~~~l~~~g~~~v~~vD~s~ 129 (229)
...+||=+|||+ |. .+..|+..|+++++.+|...
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 468999999997 65 56667777999999999764
No 493
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=41.52 E-value=98 Score=26.37 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEE-------EcCCCCCC---CCCCceeEEEcccchhhh
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVS-------RADPHNLP---FFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~-------~~d~~~~~---~~~~~fD~V~~~~~~~~~ 161 (229)
++++.+++=.|+|. |..+..++.. |. ++++++.+++..++. ..+..+.. ...+.+|+|+... ..
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~-g~-- 242 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV-SA-- 242 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC-CC--
Confidence 57788887777643 4455555555 76 888888775422110 01111110 1135688888521 11
Q ss_pred CHHHHHHHHHhccccCcEEEEEe
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
...+..+.+.|+++|+++.+-
T Consensus 243 --~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 243 --SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred --cchHHHHHHHhcCCCEEEEEe
Confidence 124677788999999987553
No 494
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=41.19 E-value=1.2e+02 Score=26.63 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCCC----hhhHHHHhC-CCCeEEEecCCCCC
Q 027039 95 FNHSKVLCVSAGAG----HEVMAFNSI-GVADVTGVELMDSL 131 (229)
Q Consensus 95 ~~~~~vLDiG~G~G----~~~~~l~~~-g~~~v~~vD~s~~~ 131 (229)
...-.++..|.|+| ..+..+.+. +..+|+++|+..+.
T Consensus 210 ~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~ 251 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESI 251 (362)
T ss_pred cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcce
Confidence 45556788888887 466778877 55699999998773
No 495
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=41.16 E-value=1.2e+02 Score=28.28 Aligned_cols=83 Identities=8% Similarity=-0.046 Sum_probs=46.8
Q ss_pred CeEEEEcCCCChhhHHHH----hCCCCeEEEecCCCCC--------CeEEEcCCCCCC----CCCCceeEEEcccchhhh
Q 027039 98 SKVLCVSAGAGHEVMAFN----SIGVADVTGVELMDSL--------PLVSRADPHNLP----FFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~----~~g~~~v~~vD~s~~~--------~~~~~~d~~~~~----~~~~~fD~V~~~~~~~~~ 161 (229)
.+++=+|||. .+..++ +.|. +++.+|.+++. ...+.+|+.+.. ..-+..|.++..--.. .
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~-~ 493 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG-Y 493 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh-H
Confidence 5667777764 444444 4466 99999998773 448889988732 1225778666521111 0
Q ss_pred CHHHHHHHHHhccccCcEEEEEee
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
....+-...+...|+.+++.-+.
T Consensus 494 -~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 494 -EAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred -HHHHHHHHHHHHCCCCeEEEEEC
Confidence 11112223455567777664443
No 496
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=41.02 E-value=38 Score=23.64 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
...+|+++..... -.-...+..+...++-||.+++.++.
T Consensus 9 G~e~~~~i~d~~~--g~~pnal~a~~gtv~gGGllill~p~ 47 (92)
T PF08351_consen 9 GQEFDLLIFDAFE--GFDPNALAALAGTVRGGGLLILLLPP 47 (92)
T ss_dssp T--BSSEEEE-SS-----HHHHHHHHTTB-TT-EEEEEES-
T ss_pred CCccCEEEEEccC--CCCHHHHHHHhcceecCeEEEEEcCC
Confidence 4678888875321 13356788899999999999999887
No 497
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=40.92 E-value=82 Score=29.09 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhC---C--CCeEEEecCCCCCCe---------EEEc--------CCCCC-CC-CCCceeE
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI---G--VADVTGVELMDSLPL---------VSRA--------DPHNL-PF-FDEAFDV 151 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~---g--~~~v~~vD~s~~~~~---------~~~~--------d~~~~-~~-~~~~fD~ 151 (229)
++..+.|..||+|.+....... | ...++|-+....+.. .+.+ |.... .+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 5679999999999887654321 1 235788888766211 1111 11111 11 2356899
Q ss_pred EEccc---chh-----------------h----h--CHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAH---LAE-----------------A----L--FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~---~~~-----------------~----~--~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|+++- ..+ | . .-..++..+...|++||+..++.+.
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 88771 100 0 0 1145778889999999998877664
No 498
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=40.81 E-value=25 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=19.5
Q ss_pred CeEEEEcCCC-C-hhhHHHHhCCCCeEEEecCCCC
Q 027039 98 SKVLCVSAGA-G-HEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 98 ~~vLDiG~G~-G-~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
++|--+|.|. | ..+..+++.|+ +|+|+|+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChH
Confidence 4667777775 3 34445667787 9999999987
No 499
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=40.81 E-value=34 Score=28.78 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=44.3
Q ss_pred eEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCeEE--Ec--C-C-CCCCCCCCceeEEEcccchhhhCHHHHHHHH
Q 027039 99 KVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVS--RA--D-P-HNLPFFDEAFDVAFTAHLAEALFPSRFVGEM 170 (229)
Q Consensus 99 ~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~--~~--d-~-~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~ 170 (229)
+|.=||+|. |.++..+.+.|+ +|+++|.++...+-. .+ + . .+.. .-...|+|+..--.. ...++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~~~~~~-~~~~aDlVilavp~~--~~~~~~~~l 77 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEASTDLS-LLKDCDLVILALPIG--LLLPPSEQL 77 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccccCCHh-HhcCCCEEEEcCCHH--HHHHHHHHH
Confidence 567788886 566777777777 899999986632210 00 0 0 0111 124578888742111 124456777
Q ss_pred HhccccCcE
Q 027039 171 ERTVKIGGV 179 (229)
Q Consensus 171 ~~~LkpgG~ 179 (229)
...++++..
T Consensus 78 ~~~l~~~~i 86 (279)
T PRK07417 78 IPALPPEAI 86 (279)
T ss_pred HHhCCCCcE
Confidence 777777644
No 500
>PRK12744 short chain dehydrogenase; Provisional
Probab=40.65 E-value=1.4e+02 Score=24.17 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCC---hhhHHHHhCCCCeEEEecCCCC------------------CCeEEEcCCCCCC-----C-----
Q 027039 96 NHSKVLCVSAGAG---HEVMAFNSIGVADVTGVELMDS------------------LPLVSRADPHNLP-----F----- 144 (229)
Q Consensus 96 ~~~~vLDiG~G~G---~~~~~l~~~g~~~v~~vD~s~~------------------~~~~~~~d~~~~~-----~----- 144 (229)
.+.++|-.|++.| ..+..+++.|. +++.++.+.. .+.+++.|+.+.. +
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 3568888886655 23333445576 5555543211 2346677876531 0
Q ss_pred CCCceeEEEcccch------hhhC--------------HHHHHHHHHhccccCcEEEEE
Q 027039 145 FDEAFDVAFTAHLA------EALF--------------PSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 145 ~~~~fD~V~~~~~~------~~~~--------------~~~~l~~~~~~LkpgG~lil~ 183 (229)
.-+..|+++.+.-. .... +..+++.+.+.++++|.++++
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 01468888876211 1111 123456777777778876654
Done!