Query 027041
Match_columns 229
No_of_seqs 201 out of 1217
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 4.9E-55 1.1E-59 397.6 13.9 210 1-220 2-212 (301)
2 PLN03014 carbonic anhydrase 100.0 5.1E-48 1.1E-52 356.6 16.4 179 40-222 83-263 (347)
3 PLN03019 carbonic anhydrase 100.0 1.6E-47 3.5E-52 351.6 15.1 180 40-223 78-259 (330)
4 PLN00416 carbonate dehydratase 100.0 5.5E-44 1.2E-48 319.7 15.5 177 39-222 5-184 (258)
5 cd00884 beta_CA_cladeB Carboni 100.0 1E-38 2.2E-43 274.0 13.2 129 96-224 1-131 (190)
6 COG0288 CynT Carbonic anhydras 100.0 7.6E-39 1.6E-43 278.4 12.0 128 87-219 1-129 (207)
7 PRK10437 carbonic anhydrase; P 100.0 2E-38 4.2E-43 278.3 14.0 128 88-222 2-129 (220)
8 PLN02154 carbonic anhydrase 100.0 2.6E-38 5.5E-43 286.9 15.0 150 66-219 56-206 (290)
9 cd00883 beta_CA_cladeA Carboni 100.0 3E-38 6.5E-43 268.5 12.1 118 97-221 1-118 (182)
10 PRK15219 carbonic anhydrase; P 100.0 1.2E-37 2.7E-42 276.9 13.7 127 85-222 52-181 (245)
11 cd03378 beta_CA_cladeC Carboni 100.0 1.5E-33 3.2E-38 235.7 11.6 103 88-196 3-108 (154)
12 KOG1578 Predicted carbonic anh 100.0 3.4E-33 7.3E-38 250.7 4.7 152 46-214 36-188 (276)
13 PF00484 Pro_CA: Carbonic anhy 100.0 1.8E-30 3.8E-35 211.9 9.1 94 123-222 1-94 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 2.3E-29 5E-34 201.2 8.7 102 119-223 1-107 (119)
15 cd03379 beta_CA_cladeD Carboni 99.9 1.9E-27 4.2E-32 194.8 6.3 74 119-198 1-74 (142)
16 KOG1578 Predicted carbonic anh 98.4 1.2E-08 2.6E-13 92.8 -3.8 123 93-218 3-153 (276)
17 PF04019 DUF359: Protein of un 57.2 73 0.0016 26.0 7.7 81 115-202 6-86 (121)
18 PRK11440 putative hydrolase; P 40.7 41 0.00088 28.1 3.9 51 139-198 90-141 (188)
19 PF07859 Abhydrolase_3: alpha/ 38.0 27 0.00058 28.6 2.4 34 165-198 51-89 (211)
20 TIGR01250 pro_imino_pep_2 prol 33.8 55 0.0012 26.8 3.6 32 167-198 83-114 (288)
21 PF12697 Abhydrolase_6: Alpha/ 33.1 57 0.0012 25.3 3.4 33 166-198 52-84 (228)
22 PRK03592 haloalkane dehalogena 32.4 53 0.0012 28.4 3.5 33 167-199 80-112 (295)
23 PLN02824 hydrolase, alpha/beta 29.6 62 0.0013 28.0 3.4 33 167-199 89-121 (294)
24 cd01015 CSHase N-carbamoylsarc 29.4 86 0.0019 25.9 4.1 51 139-198 83-134 (179)
25 PF00857 Isochorismatase: Isoc 29.3 1.4E+02 0.003 23.9 5.3 44 144-196 86-129 (174)
26 PF00561 Abhydrolase_1: alpha/ 28.5 63 0.0014 25.8 3.1 34 164-197 28-61 (230)
27 TIGR03100 hydr1_PEP hydrolase, 27.3 75 0.0016 27.9 3.6 32 165-197 84-116 (274)
28 KOG4387 Ornithine decarboxylas 27.3 59 0.0013 28.8 2.8 27 164-190 119-145 (191)
29 PRK01160 hypothetical protein; 27.1 3E+02 0.0065 24.0 7.1 81 114-201 54-138 (178)
30 KOG3905 Dynein light intermedi 26.1 46 0.001 32.5 2.1 47 174-222 218-265 (473)
31 PTZ00331 alpha/beta hydrolase; 26.1 1.2E+02 0.0025 26.3 4.4 62 129-193 96-160 (212)
32 KOG0025 Zn2+-binding dehydroge 25.2 1E+02 0.0022 29.6 4.2 43 136-188 153-195 (354)
33 PF02100 ODC_AZ: Ornithine dec 25.0 60 0.0013 25.8 2.3 35 164-198 41-75 (108)
34 PF01368 DHH: DHH family; Int 24.2 68 0.0015 24.8 2.4 21 178-198 4-26 (145)
35 cd01012 YcaC_related YcaC rela 23.8 1.4E+02 0.0031 24.1 4.4 45 142-195 60-104 (157)
36 PF01764 Lipase_3: Lipase (cla 23.7 1.3E+02 0.0027 23.0 3.9 33 166-198 50-82 (140)
37 COG1116 TauB ABC-type nitrate/ 23.3 42 0.00092 30.7 1.2 14 179-192 29-42 (248)
38 PF13580 SIS_2: SIS domain; PD 21.6 1.6E+02 0.0034 23.5 4.1 39 139-186 99-138 (138)
39 PRK10566 esterase; Provisional 21.4 1.2E+02 0.0025 25.4 3.5 27 168-194 93-121 (249)
40 KOG0922 DEAH-box RNA helicase 21.4 69 0.0015 33.3 2.4 24 167-192 56-79 (674)
41 cd01013 isochorismatase Isocho 20.6 1.9E+02 0.004 24.7 4.6 49 141-198 113-162 (203)
42 TIGR00040 yfcE phosphoesterase 20.5 3.9E+02 0.0085 21.2 6.3 64 120-191 52-118 (158)
43 COG2885 OmpA Outer membrane pr 20.4 1.2E+02 0.0025 25.5 3.3 27 168-194 103-129 (190)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=4.9e-55 Score=397.64 Aligned_cols=210 Identities=52% Similarity=0.812 Sum_probs=181.9
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCcccccCCCccccchhhhHHHHHHHhhhc-CCcccccccccccchhhhccccchh
Q 027041 1 MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKS-SGFKLKGWRHSEGITQEFQVDKLET 79 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~t~~l~~~~~~~ 79 (229)
+|+|+++|||+|||+|+|+. +.+.....+|..+ ...|+++|...+|++ .+++.+|++|+++||+||+....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 74 (301)
T PLN03006 2 AATPTHFSVSHDPFSSTSLL--NLQTQAIFGPNHS----LKTTQLRIPASFRRKATNLQVMASGKTPGLTQEANGVAID- 74 (301)
T ss_pred CCCCCCcccccCCcchhhhh--ccCcceeecCCcc----cceeEecccccccccccchhhhhhhchHHHHHHHhhccCC-
Confidence 47899999999999999996 2233344445444 667889999988775 488899999999999999865533
Q ss_pred hHhhhcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCC
Q 027041 80 AAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC 159 (229)
Q Consensus 80 ~~~~~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~ 159 (229)
..++.+++++|++||.+|+..++.+++++|+++++||+|+++||+||||||+|+.|||++|||+||+||+||+|+|+
T Consensus 75 ---~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~ 151 (301)
T PLN03006 75 ---RQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPY 151 (301)
T ss_pred ---CCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCc
Confidence 12468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCCCCCCccHHHHHhhhhhhH
Q 027041 160 ESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEV 220 (229)
Q Consensus 160 d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~~~~~~~i~~WL~~i~~~~ 220 (229)
+.+..++.++|||||.+|+|++|||||||+||||+|+++..+.+...++|+.|+..+.+..
T Consensus 152 d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~~~~~I~~wv~~~~~a~ 212 (301)
T PLN03006 152 ESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSRSFIHNWVVVGKKAK 212 (301)
T ss_pred cccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCCchhHHHHHHHHHHHHH
Confidence 8655679999999999999999999999999999999987666544569999998666543
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=5.1e-48 Score=356.61 Aligned_cols=179 Identities=40% Similarity=0.626 Sum_probs=160.3
Q ss_pred hhhhHHHHHHHhhhcCCcccccccccccchhhhccccchhhHhhhcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCC
Q 027041 40 IGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119 (229)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ 119 (229)
++++..+|+|+|++|++|+.+|++|++++|+||+..... ...+++++++|++||++|+++.+.+++++|+++++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ 158 (347)
T PLN03014 83 YDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSS----DKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQ 158 (347)
T ss_pred HHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCC----CCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCC
Confidence 788999999999999999999999999999999864321 1345899999999999999999999999999999999
Q ss_pred CCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCC-chhhHHHHHHHHhcCCceEEEEccCcchHHHHhhh
Q 027041 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 120 ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~-~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~ 198 (229)
+|+++||+|+||||+|+.|||++|||+||+||+||+|+++|... .++.++|||||.+|+|++|||||||+||||+|++.
T Consensus 159 ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~ 238 (347)
T PLN03014 159 SPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 238 (347)
T ss_pred CCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHh
Confidence 99999999999999999999999999999999999999987422 35899999999999999999999999999999998
Q ss_pred CCCCCC-CCccHHHHHhhhhhhHHH
Q 027041 199 MQDEED-PRSLGESNLCKILLEVGF 222 (229)
Q Consensus 199 ~~~~~~-~~~~i~~WL~~i~~~~~~ 222 (229)
..+++. ..++|++||+.+.+.+..
T Consensus 239 ~~~~g~~~~~~I~~wl~~i~pA~~~ 263 (347)
T PLN03014 239 FPLDGNNSTDFIEDWVKICLPAKSK 263 (347)
T ss_pred ccccccccchhHHHHHHHHHHHHHH
Confidence 654432 245999999999888654
No 3
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.6e-47 Score=351.61 Aligned_cols=180 Identities=39% Similarity=0.622 Sum_probs=160.9
Q ss_pred hhhhHHHHHHHhhhcCCcccccccccccchhhhccccchhhHhhhcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCC
Q 027041 40 IGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119 (229)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ 119 (229)
++++..+|+|+|++|.+|+.+|++|++++|+||+..... ...+++++++|++||.+|+...+.+++++|++++.||
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La~gQ 153 (330)
T PLN03019 78 YEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSS----DSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKGQ 153 (330)
T ss_pred HHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCC----CCchhHHHHHHHHHHHHHHhccccccHHHHHhhccCC
Confidence 789999999999999999999999999999999974322 1346899999999999999999989999999999999
Q ss_pred CCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCC-chhhHHHHHHHHhcCCceEEEEccCcchHHHHhhh
Q 027041 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 120 ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~-~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~ 198 (229)
+|+++||+||||||+|+.|||++|||+||+||+||+|+++|... .++.++|||||.+|||++|||||||+||||+|+++
T Consensus 154 ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal~ 233 (330)
T PLN03019 154 SPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 233 (330)
T ss_pred CCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 99999999999999999999999999999999999999987422 46889999999999999999999999999999998
Q ss_pred CCCCCC-CCccHHHHHhhhhhhHHHh
Q 027041 199 MQDEED-PRSLGESNLCKILLEVGFL 223 (229)
Q Consensus 199 ~~~~~~-~~~~i~~WL~~i~~~~~~~ 223 (229)
..+++. .+++|++||+.+.+.+..+
T Consensus 234 ~~~~g~~~~~~I~~wL~~i~pA~~~v 259 (330)
T PLN03019 234 FPLDGNNSTDFIEDWVKICLPAKSKV 259 (330)
T ss_pred ccccCCccchHHHHHHHHHHHHHHHH
Confidence 654432 2469999999988876543
No 4
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.5e-44 Score=319.68 Aligned_cols=177 Identities=40% Similarity=0.621 Sum_probs=157.4
Q ss_pred chhhhHHHHHHHhhhcCCcccccccccccchhhhccccchhhHhhhcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcC
Q 027041 39 QIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADG 118 (229)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~g 118 (229)
.+++.-.+|.++|+.+..++++++.+...++..|+.... .+.+++++|++||.+|+..++.+++++|+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~g 77 (258)
T PLN00416 5 SYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELDS-------SNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKT 77 (258)
T ss_pred cHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHhcccccCHHHHHhhccC
Confidence 367888899999999999999999999999999998753 3567899999999999999988889999999999
Q ss_pred CCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCC-chhhHHHHHHHHhcCCceEEEEccCcchHHHHhh
Q 027041 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALM 197 (229)
Q Consensus 119 Q~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~-~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~ 197 (229)
|+|+++||+||||||+|+.|||.+|||+||+||+||+|+++|... .++.++|||||.+|||++|||||||+||||+|++
T Consensus 78 Q~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~ 157 (258)
T PLN00416 78 QTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLM 157 (258)
T ss_pred CCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 999999999999999999999999999999999999999977422 4688999999999999999999999999999999
Q ss_pred hCCCCC--CCCccHHHHHhhhhhhHHH
Q 027041 198 SMQDEE--DPRSLGESNLCKILLEVGF 222 (229)
Q Consensus 198 ~~~~~~--~~~~~i~~WL~~i~~~~~~ 222 (229)
+..+.. ...+++..||+.+.+.+..
T Consensus 158 ~~~~~~~~~~~~~l~~wl~~i~pa~~~ 184 (258)
T PLN00416 158 SIEDDAAPTQSDFIENWVKIGASARNK 184 (258)
T ss_pred hccccccccccchHHHHHHHHHHHHHH
Confidence 753321 1135899999999887654
No 5
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1e-38 Score=274.01 Aligned_cols=129 Identities=47% Similarity=0.680 Sum_probs=114.7
Q ss_pred HHHhhhhhhhhhCHHHHHhhhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCC--CCchhhHHHHHH
Q 027041 96 RFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCES--GPSETNAALEFA 173 (229)
Q Consensus 96 gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~--~~~~~~asLeyA 173 (229)
||.+|++..+.+++++|++++.||+|+++||+||||||+|+.+|+.+|||+||+||+||+|++++. ++.++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 588898888888899999999999999999999999999999999999999999999999998754 346799999999
Q ss_pred HHhcCCceEEEEccCcchHHHHhhhCCCCCCCCccHHHHHhhhhhhHHHhh
Q 027041 174 VNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGFLW 224 (229)
Q Consensus 174 V~~L~V~~IVV~GHtdCGai~a~~~~~~~~~~~~~i~~WL~~i~~~~~~~~ 224 (229)
|.+|+|++|||||||+||||+|+++........+++..||+++.+.+....
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~~~~~~~~l~~wl~~i~~~~~~~~ 131 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPEDLLDKLPFIGKWLRIAEPAKEVVL 131 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhccccccCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999765422224589999999998876554
No 6
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-39 Score=278.36 Aligned_cols=128 Identities=33% Similarity=0.495 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhCHHHHHhhh-cCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCch
Q 027041 87 CDFFDKMKHRFLSFKKQKFMENLEHYQNLA-DGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSE 165 (229)
Q Consensus 87 ~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~-~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~ 165 (229)
|..+++|++||.+|.+..+..++++|+.+. .+|+|+++||+||||||+||.+||.+|||+||+||+||+|++++ .+
T Consensus 1 ~~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~---~~ 77 (207)
T COG0288 1 MSALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD---GS 77 (207)
T ss_pred CcHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc---cc
Confidence 356899999999999998888888998766 56999999999999999999999999999999999999999875 36
Q ss_pred hhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCCCCCCccHHHHHhhhhhh
Q 027041 166 TNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLE 219 (229)
Q Consensus 166 ~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~~~~~~~i~~WL~~i~~~ 219 (229)
++++|||||.+|||++|||||||+|||++|++.....+.. ++..||.++.+.
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~--~i~~wl~~i~~~ 129 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK--PIPGWLLHIEDL 129 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc--ccchhhhHHHHH
Confidence 9999999999999999999999999999999987766532 699999877665
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=2e-38 Score=278.33 Aligned_cols=128 Identities=30% Similarity=0.475 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCchhh
Q 027041 88 DFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETN 167 (229)
Q Consensus 88 ~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~ 167 (229)
..+++|++||++|++..+..++++|+.+..+|+|+++||+||||||+|+.+||.+|||+||+||+||+|++.+. ++.
T Consensus 2 ~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~---~~~ 78 (220)
T PRK10437 2 KDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL---NCL 78 (220)
T ss_pred chHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc---chH
Confidence 45889999999999988888899999999999999999999999999999999999999999999999998653 689
Q ss_pred HHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCCCCCCccHHHHHhhhhhhHHH
Q 027041 168 AALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGF 222 (229)
Q Consensus 168 asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~~~~~~~i~~WL~~i~~~~~~ 222 (229)
++|||||.+|||++|||||||+||+|+|+++... .++++.||+++.+.+..
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~----~~~i~~wl~~i~~~~~~ 129 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPE----LGLINNWLLHIRDIWFK 129 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC----cccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997532 25899999999987643
No 8
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=2.6e-38 Score=286.90 Aligned_cols=150 Identities=55% Similarity=0.904 Sum_probs=128.1
Q ss_pred ccchhhhccccchhhHhhhcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCCCCcEEEEeccCCCCChhhhcCCCCCc
Q 027041 66 EGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGE 145 (229)
Q Consensus 66 ~~~t~~l~~~~~~~~~~~~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd 145 (229)
.+++.+|.+...+ .....+.+++|++||.+|+...|..+++.|+.++.+|+|+++||+|+||||+|+.|||.+|||
T Consensus 56 ~~~~~~~~~~~~~----~~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGd 131 (290)
T PLN02154 56 LGIREEFMDLNRE----TETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGE 131 (290)
T ss_pred chhhHHHHhcccC----cchhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCC
Confidence 3445566554321 233458899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCC-CCCCccHHHHHhhhhhh
Q 027041 146 AFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE-EDPRSLGESNLCKILLE 219 (229)
Q Consensus 146 ~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~-~~~~~~i~~WL~~i~~~ 219 (229)
+||+||+||+|++++.++.++.++|||||.+|+|++|||||||+||||+|+++.... +...++++.|+..+.+.
T Consensus 132 lFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a 206 (290)
T PLN02154 132 AFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAA 206 (290)
T ss_pred EEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHH
Confidence 999999999999987665689999999999999999999999999999999975322 22346899999876543
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3e-38 Score=268.53 Aligned_cols=118 Identities=35% Similarity=0.604 Sum_probs=107.6
Q ss_pred HHhhhhhhhhhCHHHHHhhhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHh
Q 027041 97 FLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNS 176 (229)
Q Consensus 97 n~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~ 176 (229)
|++|+...+.+++++|+++..+|+|+++||+||||||+|+.+||.+|||+||+||+||+|++.+ .++.++|||||.+
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~---~~~~asleyAv~~ 77 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTD---LNCLSVLQYAVDV 77 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCC---cchhhhHHHHHHh
Confidence 5678888888999999999999999999999999999999999999999999999999999875 3699999999999
Q ss_pred cCCceEEEEccCcchHHHHhhhCCCCCCCCccHHHHHhhhhhhHH
Q 027041 177 VKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVG 221 (229)
Q Consensus 177 L~V~~IVV~GHtdCGai~a~~~~~~~~~~~~~i~~WL~~i~~~~~ 221 (229)
|||++|||||||+||+++|+++.. ..+++..||+.+.+.+.
T Consensus 78 L~v~~IvV~GHs~CGav~a~~~~~----~~~~~~~wl~~~~~~~~ 118 (182)
T cd00883 78 LKVKHIIVCGHYGCGGVKAALTGK----RLGLLDNWLRPIRDVYR 118 (182)
T ss_pred cCCCEEEEecCCCchHHHHHHcCC----CCccHHHHHHHHHHHHH
Confidence 999999999999999999999753 23589999998887654
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.2e-37 Score=276.93 Aligned_cols=127 Identities=23% Similarity=0.338 Sum_probs=111.6
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhCHHHH---HhhhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCC
Q 027041 85 NECDFFDKMKHRFLSFKKQKFMENLEHY---QNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCES 161 (229)
Q Consensus 85 ~~~~~~~~Ll~gn~~f~~~~~~~~~~~~---~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~ 161 (229)
.+.+++++|++||++|++..+. +++++ ..+.+||+|+++||+|+||||+||.+||.+|||+||+||+||+|++
T Consensus 52 ~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~--- 127 (245)
T PRK15219 52 TPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND--- 127 (245)
T ss_pred CHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc---
Confidence 4567899999999999998765 34443 2457899999999999999999999999999999999999999974
Q ss_pred CCchhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCCCCCCccHHHHHhhhhhhHHH
Q 027041 162 GPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGF 222 (229)
Q Consensus 162 ~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~~~~~~~i~~WL~~i~~~~~~ 222 (229)
++.++|||||.+|+|++|||||||+||+|+|++.... .+++..||+.+.+.+..
T Consensus 128 ---~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~----~g~l~~wl~~i~pa~~~ 181 (245)
T PRK15219 128 ---DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE----LGNLTGLLDRIKPAIEV 181 (245)
T ss_pred ---chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC----cchHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999997543 24899999999998654
No 11
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.5e-33 Score=235.69 Aligned_cols=103 Identities=32% Similarity=0.575 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhhhhhhhh---CHHHHHhhhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCc
Q 027041 88 DFFDKMKHRFLSFKKQKFME---NLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPS 164 (229)
Q Consensus 88 ~~~~~Ll~gn~~f~~~~~~~---~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~ 164 (229)
.++++|++||++|.+.++.. +++.|..+.++|+|+++||+|||||++|+.+||++|||+||+||+||+|++
T Consensus 3 ~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~------ 76 (154)
T cd03378 3 EALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD------ 76 (154)
T ss_pred HHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh------
Confidence 67899999999998865431 255688899999999999999999999999999999999999999999986
Q ss_pred hhhHHHHHHHHhcCCceEEEEccCcchHHHHh
Q 027041 165 ETNAALEFAVNSVKVENILVIGHSRCGGIHAL 196 (229)
Q Consensus 165 ~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~ 196 (229)
++.++||||+.+|||++|||||||+||+++++
T Consensus 77 ~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~ 108 (154)
T cd03378 77 DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA 108 (154)
T ss_pred hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH
Confidence 48999999999999999999999999999998
No 12
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.4e-33 Score=250.67 Aligned_cols=152 Identities=38% Similarity=0.596 Sum_probs=136.4
Q ss_pred HHHHHhhhcCCcccccccccccchhhhccccchhhHhhhcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCCCCcEEE
Q 027041 46 SLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMV 125 (229)
Q Consensus 46 ~l~~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lv 125 (229)
.+.++|.++.++ +|++++.++|++ .+.+++++++|..|++.+|.++|..|..++++|+|+.+|
T Consensus 36 ~dsrml~~r~~~--~~~~~~~~~~~~---------------~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~ 98 (276)
T KOG1578|consen 36 MDSRMLPTRYNL--VAAAKIKKLTAE---------------FDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLA 98 (276)
T ss_pred HHhhccchhhhh--hhhhhhhhhhhc---------------cchHHHHHhhHhhhccccCCCChhhhHHHhccCCCcceE
Confidence 445556666666 788888888883 478899999999999999999999999999999999999
Q ss_pred EeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCC-chhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCCCC
Q 027041 126 IACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEED 204 (229)
Q Consensus 126 ItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~-~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~~~ 204 (229)
|+|+||||+|++|++++|||+|++||++|+|+|+++.+ ..+.++|||+|.+|+|++|+||||++|||++++|....++.
T Consensus 99 i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~ 178 (276)
T KOG1578|consen 99 LECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAP 178 (276)
T ss_pred EEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhcccccccCc
Confidence 99999999999999999999999999999999887644 77899999999999999999999999999999999988876
Q ss_pred CCccHHHHHh
Q 027041 205 PRSLGESNLC 214 (229)
Q Consensus 205 ~~~~i~~WL~ 214 (229)
..+|+..|+.
T Consensus 179 ~~~f~~~wv~ 188 (276)
T KOG1578|consen 179 SRSFIENWVY 188 (276)
T ss_pred chhhhhhhee
Confidence 5579999984
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.97 E-value=1.8e-30 Score=211.89 Aligned_cols=94 Identities=38% Similarity=0.676 Sum_probs=78.4
Q ss_pred EEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCC
Q 027041 123 FMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE 202 (229)
Q Consensus 123 ~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~ 202 (229)
++||+|||||++|+.+|+.+|||+||+||+||+|++.+ .++.++||||+.+||+++|||||||+||++++++...+
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~---~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~- 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD---DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE- 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH-
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc---cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc-
Confidence 58999999999999999999999999999999998764 47999999999999999999999999999999887433
Q ss_pred CCCCccHHHHHhhhhhhHHH
Q 027041 203 EDPRSLGESNLCKILLEVGF 222 (229)
Q Consensus 203 ~~~~~~i~~WL~~i~~~~~~ 222 (229)
.++++++||+++.+....
T Consensus 77 --~~~~l~~~l~~~~~~~~~ 94 (153)
T PF00484_consen 77 --EDGFLRDWLQKIRPALEE 94 (153)
T ss_dssp --TCSHHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHhhhhhHHH
Confidence 245899999999987655
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.96 E-value=2.3e-29 Score=201.15 Aligned_cols=102 Identities=38% Similarity=0.675 Sum_probs=82.1
Q ss_pred CCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHHhhh
Q 027041 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 119 Q~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~ 198 (229)
|+|+++||+|||||++|+.+||++|||+||+||+||+|++.+ .++.++||||+..||+++|+|||||+||++++...
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~---~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a~~~ 77 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD---LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKALVE 77 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc---ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHHHHH
Confidence 799999999999999999999999999999999999999764 46999999999999999999999999999997332
Q ss_pred CC-----CCCCCCccHHHHHhhhhhhHHHh
Q 027041 199 MQ-----DEEDPRSLGESNLCKILLEVGFL 223 (229)
Q Consensus 199 ~~-----~~~~~~~~i~~WL~~i~~~~~~~ 223 (229)
.. +.-...+++..|++.-...||.+
T Consensus 78 ~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~ 107 (119)
T cd00382 78 ENVREQVENLRSHPLIQEAVAPGELKVHGW 107 (119)
T ss_pred HHHHHHHHHHHhCHHHHHHHHCCCCEEEEE
Confidence 11 00011245666665544444443
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.94 E-value=1.9e-27 Score=194.84 Aligned_cols=74 Identities=28% Similarity=0.515 Sum_probs=69.9
Q ss_pred CCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHHhhh
Q 027041 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 119 Q~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~ 198 (229)
++++++||+|||||++|+.+||.+|||+||+||+||+|++ ++.++|+||+.+||+++|+|||||+||+++++..
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~ 74 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE 74 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecHH
Confidence 4679999999999999999999999999999999999986 4899999999999999999999999999998765
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.42 E-value=1.2e-08 Score=92.75 Aligned_cols=123 Identities=22% Similarity=0.323 Sum_probs=92.8
Q ss_pred HHHHHHhhhhhhhhhCHHHHHhhhcCCCCcEEEEeccCCCCChhhh----------------cCCCCCcEEEEEccCCCC
Q 027041 93 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNI----------------LGFQPGEAFIVRNVANMV 156 (229)
Q Consensus 93 Ll~gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~i----------------lg~~pGd~FVvRNaGN~V 156 (229)
|+.|..+|+...... ...++..-++|.+..++|+|+|+-|... +.-+.||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 566777777765432 2356677789999999999999999877 566889999999999999
Q ss_pred CCCCCCC------chhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCC----CC--CCccHHHHHhhhhh
Q 027041 157 PPCESGP------SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE----ED--PRSLGESNLCKILL 218 (229)
Q Consensus 157 ~~~d~~~------~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~----~~--~~~~i~~WL~~i~~ 218 (229)
+...... +--.++|+.|+.+....||+||||.+|-+++...+.... .. ..+.++-||..+..
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkv 153 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKV 153 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhcc
Confidence 8533211 123356777888888999999999999999998887652 11 12589999986653
No 17
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=57.21 E-value=73 Score=25.97 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=66.5
Q ss_pred hhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHHH
Q 027041 115 LADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIH 194 (229)
Q Consensus 115 l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~ 194 (229)
+..|-.|.+.++-+=--|-+...... .....+.++|..+-+.. +...+|..|+..-+--.|+|-|-.|=-++-
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~------el~~ai~~a~~~~~~~~I~V~GEEDL~~lP 78 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE------ELIEAIKKALESGKPVVIFVDGEEDLAVLP 78 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH------HHHHHHHHHHhCCCCEEEEEeChHHHHHHH
Confidence 35688999999999888887655444 66689999999999975 478899999877777899999999999999
Q ss_pred HhhhCCCC
Q 027041 195 ALMSMQDE 202 (229)
Q Consensus 195 a~~~~~~~ 202 (229)
+.+..+.+
T Consensus 79 ail~aP~g 86 (121)
T PF04019_consen 79 AILYAPEG 86 (121)
T ss_pred HHHhCCCC
Confidence 88876653
No 18
>PRK11440 putative hydrolase; Provisional
Probab=40.72 E-value=41 Score=28.09 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=32.6
Q ss_pred cCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHH-HHhhh
Q 027041 139 LGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGI-HALMS 198 (229)
Q Consensus 139 lg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai-~a~~~ 198 (229)
+...+||.++.++--+-+. ...|+.-+...|+++|||+|=+-..-| ..+..
T Consensus 90 l~~~~~d~vi~K~~~saF~---------~T~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~~ 141 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFY---------GTDLELQLRRRGIDTIVLCGISTNIGVESTARN 141 (188)
T ss_pred cCCCCCCEEEecCCcCCCC---------CCCHHHHHHHCCCCEEEEeeechhHHHHHHHHH
Confidence 4556789888887544332 124566677899999999995443333 33433
No 19
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=38.02 E-value=27 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHh-----cCCceEEEEccCcchHHHHhhh
Q 027041 165 ETNAALEFAVNS-----VKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 165 ~~~asLeyAV~~-----L~V~~IVV~GHtdCGai~a~~~ 198 (229)
++.+++++...+ ...+.|+|+|||..|.+...+.
T Consensus 51 D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 51 DVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred ccccceeeeccccccccccccceEEeecccccchhhhhh
Confidence 578899998887 6678999999999888776654
No 20
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=33.80 E-value=55 Score=26.80 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=24.6
Q ss_pred hHHHHHHHHhcCCceEEEEccCcchHHHHhhh
Q 027041 167 NAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 167 ~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~ 198 (229)
...+...+..++.+.++|+|||--|.+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a 114 (288)
T TIGR01250 83 VDELEEVREKLGLDKFYLLGHSWGGMLAQEYA 114 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeehHHHHHHHHH
Confidence 34445556788999999999999998876554
No 21
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=33.06 E-value=57 Score=25.30 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=25.7
Q ss_pred hhHHHHHHHHhcCCceEEEEccCcchHHHHhhh
Q 027041 166 TNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 166 ~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~ 198 (229)
....|...+..++.+.|+++|||-=|.+...+.
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a 84 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRLA 84 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccccccccccc
Confidence 455677788999999999999998776665443
No 22
>PRK03592 haloalkane dehalogenase; Provisional
Probab=32.40 E-value=53 Score=28.43 Aligned_cols=33 Identities=9% Similarity=0.236 Sum_probs=26.3
Q ss_pred hHHHHHHHHhcCCceEEEEccCcchHHHHhhhC
Q 027041 167 NAALEFAVNSVKVENILVIGHSRCGGIHALMSM 199 (229)
Q Consensus 167 ~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~ 199 (229)
...+...+.+|+.+.++|+||+--|.+...+..
T Consensus 80 a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~ 112 (295)
T PRK03592 80 ARYLDAWFDALGLDDVVLVGHDWGSALGFDWAA 112 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHH
Confidence 344555678899999999999999998876654
No 23
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=29.59 E-value=62 Score=28.02 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=24.8
Q ss_pred hHHHHHHHHhcCCceEEEEccCcchHHHHhhhC
Q 027041 167 NAALEFAVNSVKVENILVIGHSRCGGIHALMSM 199 (229)
Q Consensus 167 ~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~ 199 (229)
...|.-.+..++.+.++++|||-.|.+...+..
T Consensus 89 a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~ 121 (294)
T PLN02824 89 GEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAV 121 (294)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHH
Confidence 344444566888999999999999988865543
No 24
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=29.35 E-value=86 Score=25.92 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=31.9
Q ss_pred cCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccC-cchHHHHhhh
Q 027041 139 LGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHS-RCGGIHALMS 198 (229)
Q Consensus 139 lg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHt-dCGai~a~~~ 198 (229)
+.-.+||..+.++.-+ .+ ....|+.-+...|+++|||+|=. +|.....+.+
T Consensus 83 l~~~~~~~v~~K~~~s---aF------~~t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~ 134 (179)
T cd01015 83 LAPQEDEMVLVKKYAS---AF------FGTSLAATLTARGVDTLIVAGCSTSGCIRATAVD 134 (179)
T ss_pred cCCCCCCEEEecCccC---Cc------cCCcHHHHHHHcCCCEEEEeeecccHhHHHHHHH
Confidence 3446788777776422 22 12367777889999999999953 4443344443
No 25
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=29.32 E-value=1.4e+02 Score=23.90 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=32.7
Q ss_pred CcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHHh
Q 027041 144 GEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHAL 196 (229)
Q Consensus 144 Gd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~ 196 (229)
||..+.++--|.... ..|+.-+...|+++|||+|-.-.+-|.+.
T Consensus 86 ~~~vi~K~~~saf~~---------t~L~~~L~~~gi~~vil~G~~t~~CV~~T 129 (174)
T PF00857_consen 86 GDPVIEKNRYSAFFG---------TDLDEILRKRGIDTVILCGVATDVCVLAT 129 (174)
T ss_dssp TSEEEEESSSSTTTT---------SSHHHHHHHTTESEEEEEEESTTTHHHHH
T ss_pred ccceEEeeccccccc---------ccccccccccccceEEEcccccCcEEehh
Confidence 999999997666632 24555677899999999997666666543
No 26
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=28.54 E-value=63 Score=25.76 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=26.8
Q ss_pred chhhHHHHHHHHhcCCceEEEEccCcchHHHHhh
Q 027041 164 SETNAALEFAVNSVKVENILVIGHSRCGGIHALM 197 (229)
Q Consensus 164 ~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~ 197 (229)
....+.+++-...++++.+.++|||-=|.+...+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~ 61 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSMGGMLALEY 61 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHH
Confidence 4577888999999999999999999844444333
No 27
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=27.34 E-value=75 Score=27.90 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHhc-CCceEEEEccCcchHHHHhh
Q 027041 165 ETNAALEFAVNSV-KVENILVIGHSRCGGIHALM 197 (229)
Q Consensus 165 ~~~asLeyAV~~L-~V~~IVV~GHtdCGai~a~~ 197 (229)
++.+++++....+ +.+.|+++||+- ||.-+++
T Consensus 84 d~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~~ 116 (274)
T TIGR03100 84 DIAAAIDAFREAAPHLRRIVAWGLCD-AASAALL 116 (274)
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECH-HHHHHHH
Confidence 3556666544443 678899999998 5555544
No 28
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=27.30 E-value=59 Score=28.76 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHhcCCceEEEEccCcc
Q 027041 164 SETNAALEFAVNSVKVENILVIGHSRC 190 (229)
Q Consensus 164 ~~~~asLeyAV~~L~V~~IVV~GHtdC 190 (229)
.+..+-||||...|+++.|+||=|-+=
T Consensus 119 e~lvalLEfAEekl~~d~Vfi~F~K~R 145 (191)
T KOG4387|consen 119 EGLVALLEFAEEKLHVDKVFICFDKNR 145 (191)
T ss_pred HhHHHHHHHHHHhhccceEEEEEecCc
Confidence 578999999999999999999976543
No 29
>PRK01160 hypothetical protein; Provisional
Probab=27.10 E-value=3e+02 Score=23.98 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=59.5
Q ss_pred hhhcCCCCcEEEEeccCCCCChh-hhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhc-C--CceEEEEccCc
Q 027041 114 NLADGQAPKFMVIACADSRVCPS-NILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV-K--VENILVIGHSR 189 (229)
Q Consensus 114 ~l~~gQ~P~~lvItCsDSRV~pe-~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L-~--V~~IVV~GHtd 189 (229)
-+..|-.|.+.++-.=--|-+.. .++. .....+.++|..+-+.. +...+|++|...+ . --.|+|-|-.|
T Consensus 54 ll~~g~~P~laIvD~kTkR~~~~~~i~~-~~~~~i~V~NPpGtIt~------el~~ai~~a~~~~~~~~~~~I~VdGEED 126 (178)
T PRK01160 54 LLRVGLKPFLAIYDLKTKRREYKPSIFE-HEEVSITVRNPPGTITL------ALLRAIKKAFSLIERGKKVRIEVNGEED 126 (178)
T ss_pred HHHCCCCCCEEEEeCccccCCCcccccc-ccccEEEEECCCCcccH------HHHHHHHHHHHhhhcCCeEEEEEcChHH
Confidence 34678999999999888887643 3312 22445889999999975 5888999984422 2 22788999999
Q ss_pred chHHHHhhhCCC
Q 027041 190 CGGIHALMSMQD 201 (229)
Q Consensus 190 CGai~a~~~~~~ 201 (229)
=-++-+.+..+.
T Consensus 127 La~lP~il~aP~ 138 (178)
T PRK01160 127 LAVIPAVLYAPL 138 (178)
T ss_pred HHHHHHHHhcCC
Confidence 999998887654
No 30
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=26.13 E-value=46 Score=32.52 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=34.2
Q ss_pred HHhcCCceEEEEccCcchHHHHhhhCCCCCCC-CccHHHHHhhhhhhHHH
Q 027041 174 VNSVKVENILVIGHSRCGGIHALMSMQDEEDP-RSLGESNLCKILLEVGF 222 (229)
Q Consensus 174 V~~L~V~~IVV~GHtdCGai~a~~~~~~~~~~-~~~i~~WL~~i~~~~~~ 222 (229)
...||+.-+||| |-|-+|..+-...+-.+. -.||..||+++.+..|+
T Consensus 218 t~NlGi~vlVV~--TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga 265 (473)
T KOG3905|consen 218 THNLGIPVLVVC--TKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA 265 (473)
T ss_pred hhcCCCcEEEEE--eccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc
Confidence 458999999999 567777766654443322 24899999999887664
No 31
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=26.08 E-value=1.2e+02 Score=26.29 Aligned_cols=62 Identities=6% Similarity=0.062 Sum_probs=35.3
Q ss_pred cCCCCChhhhcCCCCCcEEEEEccCC---CCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHH
Q 027041 129 ADSRVCPSNILGFQPGEAFIVRNVAN---MVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGI 193 (229)
Q Consensus 129 sDSRV~pe~ilg~~pGd~FVvRNaGN---~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai 193 (229)
-+..+.|+. ...++|.++.++... ....++ +.......|+..+..+++++|||||=.-.--|
T Consensus 96 ~g~~i~~~L--~~~~~~~vi~K~~~~~~~~~saF~-~~~~~~t~L~~~L~~~gi~~lvi~G~~t~~CV 160 (212)
T PTZ00331 96 KGAQLHKDL--VVERIDIIIRKGTNRDVDSYSAFD-NDKGSKTGLAQILKAHGVRRVFICGLAFDFCV 160 (212)
T ss_pred CcccCChhh--ccCCCcEEEECCCCCCCceecCcc-CCCCCCchHHHHHHHCCCCEEEEEEeccCHHH
Confidence 344555543 345789888887531 112220 00012245666778899999999996543333
No 32
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=25.17 E-value=1e+02 Score=29.55 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=31.1
Q ss_pred hhhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccC
Q 027041 136 SNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHS 188 (229)
Q Consensus 136 e~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHt 188 (229)
.++-++++|| .|+.|.||-. +..++---...+|++.|=|+-.-
T Consensus 153 ~dfv~L~~GD-~vIQNganS~---------VG~~ViQlaka~GiktinvVRdR 195 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG---------VGQAVIQLAKALGIKTINVVRDR 195 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH---------HHHHHHHHHHHhCcceEEEeecC
Confidence 5677899999 8999999954 44444444578888888776543
No 33
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=25.00 E-value=60 Score=25.75 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=23.0
Q ss_pred chhhHHHHHHHHhcCCceEEEEccCcchHHHHhhh
Q 027041 164 SETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 164 ~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~ 198 (229)
.+..+-||||-..|++++|+||=+-+.-....++.
T Consensus 41 ~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr 75 (108)
T PF02100_consen 41 ESLVALLELAEEKLGCSHVVICLDKNRPDRASLLR 75 (108)
T ss_dssp HHHHHHHHHHHHHH----EEEEE---SS-HHHHHH
T ss_pred HHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhh
Confidence 57999999999999999999998888777666665
No 34
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=24.21 E-value=68 Score=24.81 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=17.2
Q ss_pred CCceEEEEccC--cchHHHHhhh
Q 027041 178 KVENILVIGHS--RCGGIHALMS 198 (229)
Q Consensus 178 ~V~~IVV~GHt--dCGai~a~~~ 198 (229)
+-+.|+|+||. |+=++.+++.
T Consensus 4 ~~~~i~i~~H~~~D~Dgl~Sa~~ 26 (145)
T PF01368_consen 4 EAERILIVGHINPDADGLGSAIA 26 (145)
T ss_dssp TTSEEEEEEBSS-SHHHHHHHHH
T ss_pred CCCEEEEEccCCCCchHHHHHHH
Confidence 45789999999 8888887764
No 35
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=23.80 E-value=1.4e+02 Score=24.10 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHH
Q 027041 142 QPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHA 195 (229)
Q Consensus 142 ~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a 195 (229)
.|+|.++.++.-|-.. ...|+..+...|+++|||+|-.-..-+.+
T Consensus 60 ~~~~~vi~K~~~saf~---------~t~L~~~L~~~gi~~lii~G~~T~~CV~~ 104 (157)
T cd01012 60 FPDAPVIEKTSFSCWE---------DEAFRKALKATGRKQVVLAGLETHVCVLQ 104 (157)
T ss_pred CCCCCceecccccCcC---------CHHHHHHHHhcCCCEEEEEEeeccHHHHH
Confidence 6788877787655442 13566667889999999999876554443
No 36
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=23.70 E-value=1.3e+02 Score=23.03 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhcCCceEEEEccCcchHHHHhhh
Q 027041 166 TNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (229)
Q Consensus 166 ~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~ 198 (229)
....|.-.+..-+-..|+|+|||==|++..++.
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 82 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASLAA 82 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHHHH
Confidence 444555556666678999999999988887655
No 37
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.28 E-value=42 Score=30.73 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=12.0
Q ss_pred CceEEEEccCcchH
Q 027041 179 VENILVIGHSRCGG 192 (229)
Q Consensus 179 V~~IVV~GHtdCGa 192 (229)
-+-|-|+|||+||=
T Consensus 29 GEfvsilGpSGcGK 42 (248)
T COG1116 29 GEFVAILGPSGCGK 42 (248)
T ss_pred CCEEEEECCCCCCH
Confidence 36789999999994
No 38
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.59 E-value=1.6e+02 Score=23.52 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=23.5
Q ss_pred cCCCCCcEEE-EEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEc
Q 027041 139 LGFQPGEAFI-VRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIG 186 (229)
Q Consensus 139 lg~~pGd~FV-vRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~G 186 (229)
.+.+|||+++ +-|-||-- .+..++++| +..|.+.|.|.|
T Consensus 99 ~~~~~gDvli~iS~SG~s~--------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP--------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-SH--------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH--------HHHHHHHHH-HHCCCEEEEEeC
Confidence 4579999655 55556642 478888888 567888887765
No 39
>PRK10566 esterase; Provisional
Probab=21.42 E-value=1.2e+02 Score=25.45 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=16.5
Q ss_pred HHHHHHHHh--cCCceEEEEccCcchHHH
Q 027041 168 AALEFAVNS--VKVENILVIGHSRCGGIH 194 (229)
Q Consensus 168 asLeyAV~~--L~V~~IVV~GHtdCGai~ 194 (229)
..+++.... +..+.|+|+|||-=|.+.
T Consensus 93 ~~~~~l~~~~~~~~~~i~v~G~S~Gg~~a 121 (249)
T PRK10566 93 TLRAAIREEGWLLDDRLAVGGASMGGMTA 121 (249)
T ss_pred HHHHHHHhcCCcCccceeEEeecccHHHH
Confidence 344443333 345789999999944444
No 40
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=21.36 E-value=69 Score=33.34 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=18.3
Q ss_pred hHHHHHHHHhcCCceEEEEccCcchH
Q 027041 167 NAALEFAVNSVKVENILVIGHSRCGG 192 (229)
Q Consensus 167 ~asLeyAV~~L~V~~IVV~GHtdCGa 192 (229)
..=|-|+|. +-+.+||+|+|+||=
T Consensus 56 r~~il~~ve--~nqvlIviGeTGsGK 79 (674)
T KOG0922|consen 56 RDQILYAVE--DNQVLIVIGETGSGK 79 (674)
T ss_pred HHHHHHHHH--HCCEEEEEcCCCCCc
Confidence 345667777 446899999999993
No 41
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=20.62 E-value=1.9e+02 Score=24.68 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=30.9
Q ss_pred CCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccC-cchHHHHhhh
Q 027041 141 FQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHS-RCGGIHALMS 198 (229)
Q Consensus 141 ~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHt-dCGai~a~~~ 198 (229)
..+||.++-++--+-+.. .-|+.-+..+|+++|||+|=. +|-....+.+
T Consensus 113 ~~~~d~vi~K~~~saF~~---------T~L~~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~ 162 (203)
T cd01013 113 PQPDDTVLTKWRYSAFKR---------SPLLERLKESGRDQLIITGVYAHIGCLSTAVD 162 (203)
T ss_pred CCCCCEEEeCCCcCCcCC---------CCHHHHHHHcCCCEEEEEEeccChhHHHHHHH
Confidence 357888777765443322 245555789999999999953 3433344443
No 42
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=20.45 E-value=3.9e+02 Score=21.22 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=29.8
Q ss_pred CCcEEEEeccCCC---CChhhhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcch
Q 027041 120 APKFMVIACADSR---VCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCG 191 (229)
Q Consensus 120 ~P~~lvItCsDSR---V~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCG 191 (229)
.|-+.|.+-.|.. .+....+.+.-..++++-.- .+.+.. ....++.-....++ .+||+|||.=.
T Consensus 52 ~~~~~V~GN~D~~~~~~~~~~~~~~~g~~i~l~Hg~--~~~~~~-----~~~~l~~~~~~~~~-d~vi~GHtH~~ 118 (158)
T TIGR00040 52 AKVIAVRGNNDGERDELPEEEIFEAEGIDFGLVHGD--LVYPRG-----DLLVLEYLAKELGV-DVLIFGHTHIP 118 (158)
T ss_pred CceEEEccCCCchhhhCCcceEEEECCEEEEEEeCc--ccccCC-----CHHHHHHHHhccCC-CEEEECCCCCC
Confidence 3566777777743 33333444433344444422 122211 11222222223333 58999998744
No 43
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=20.40 E-value=1.2e+02 Score=25.49 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCceEEEEccCcchHHH
Q 027041 168 AALEFAVNSVKVENILVIGHSRCGGIH 194 (229)
Q Consensus 168 asLeyAV~~L~V~~IVV~GHtdCGai~ 194 (229)
..|.-.+......+|+|.||||--|-.
T Consensus 103 ~~~a~~L~~~p~~~i~V~GHTD~~Gs~ 129 (190)
T COG2885 103 DELAKYLKKNPITRILVEGHTDSTGSD 129 (190)
T ss_pred HHHHHHHHhCCCcEEEEEecCCCCCCH
Confidence 333334455557899999999987643
Done!