Query 027042
Match_columns 229
No_of_seqs 179 out of 344
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:13:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5j_A Mortality factor 4-like 100.0 1E-57 3.4E-62 383.5 14.4 169 59-227 2-175 (181)
2 2y0n_A MALE-specific lethal 3 100.0 1.2E-54 4.3E-59 372.5 15.1 165 60-224 5-208 (211)
3 3nrw_A Phage integrase/site-sp 85.4 8.4 0.00029 27.7 11.3 89 92-204 4-93 (117)
4 2kd1_A DNA integration/recombi 64.0 34 0.0012 23.8 7.7 88 92-204 3-90 (118)
5 2kkp_A Phage integrase; SAM-li 59.5 40 0.0014 23.2 8.1 88 92-204 4-92 (117)
6 3fk2_A Glucocorticoid receptor 48.0 1.2E+02 0.004 25.1 13.3 19 193-211 227-245 (246)
7 2kkv_A Integrase; protein stru 36.1 1.1E+02 0.0037 21.3 9.0 86 92-204 4-89 (121)
8 1use_A VAsp, vasodilator-stimu 35.6 55 0.0019 20.7 4.0 28 99-133 15-42 (45)
9 1dtc_A Acetyl-delta-toxin; NMR 32.4 38 0.0013 18.8 2.4 20 189-208 4-23 (26)
10 1p94_A Plasmid partition prote 28.3 96 0.0033 21.5 4.7 38 60-108 34-71 (76)
11 4hg1_A Putative cytoplasmic pr 22.9 29 0.00098 28.6 1.2 26 64-89 48-73 (225)
No 1
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=100.00 E-value=1e-57 Score=383.46 Aligned_cols=169 Identities=40% Similarity=0.602 Sum_probs=148.9
Q ss_pred CCcceEEeCChhHHHHHHHHHHHHhhCCceeeCCCCCCHHHHHHHHHHhhhccCC--chhhhHHHHHHHHHHHHhhhcCc
Q 027042 59 MENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDG--LVADSTGEIVKGLRCYFDKALPI 136 (229)
Q Consensus 59 ~~~~i~i~iP~~Lk~~LvdD~e~Itk~~~Lv~LP~~~tV~~IL~~Y~~~~~~~~~--~~~~~~~e~~~Gl~~YFn~~L~~ 136 (229)
++++++|.||+.||.+|||||++||++++|++|||++||++||++|+++....+. ...+.+.|+++||++|||++||.
T Consensus 2 ~~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~ 81 (181)
T 2f5j_A 2 NRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGT 81 (181)
T ss_dssp ----CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHccc
Confidence 4578999999999999999999999999999999999999999999999876442 22357899999999999999999
Q ss_pred cCCChhhHhhHHHhhhc--CCCCccccChhHHHHHHhhhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccC
Q 027042 137 MLLYKSEREQYEDSMAA--DVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRY 213 (229)
Q Consensus 137 ~LLY~~ER~Qy~~~~~~--~~~pS~iYGa~HLLRLfvkLP~ll~~t~~d~~s~~~l~~~l~~fl~fL~~n~~~~F~-~dY 213 (229)
+|||++||+||.++++. +.+||++|||+|||||||+||+||+.|+||+++++.|+.++.+||+||++|.++||. ++|
T Consensus 82 ~LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y 161 (181)
T 2f5j_A 82 QLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDY 161 (181)
T ss_dssp HSCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGE
T ss_pred ccCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhc
Confidence 99999999999999864 458999999999999999999999999999999999999999999999999999995 999
Q ss_pred CCCCHHHHHhhccC
Q 027042 214 HSAEDVETSANKQE 227 (229)
Q Consensus 214 ~~a~~eY~~~a~~~ 227 (229)
++++|+|+++|.++
T Consensus 162 ~~~~~eY~~~~~~~ 175 (181)
T 2f5j_A 162 EVAPPEYHRKAVLE 175 (181)
T ss_dssp EECCHHHHC-----
T ss_pred CCCCHHHHHHHhhh
Confidence 99999999999876
No 2
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-54 Score=372.54 Aligned_cols=165 Identities=41% Similarity=0.625 Sum_probs=142.8
Q ss_pred CcceEEeCChhHHHHHHHHHHHHhhCCceeeCCCCCCHHHHHHHHHHhhhccC------------C--------------
Q 027042 60 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD------------G-------------- 113 (229)
Q Consensus 60 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~Lv~LP~~~tV~~IL~~Y~~~~~~~~------------~-------------- 113 (229)
+++|+|.||+.||++|||||++||++++|++|||++||++||++|+++..... +
T Consensus 5 ~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 2y0n_A 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAE 84 (211)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------CT
T ss_pred CceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccchh
Confidence 56799999999999999999999999999999999999999999998865210 0
Q ss_pred chhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhc------------CCCCccccChhHHHHHHhhhHHHhhcCC
Q 027042 114 LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAA------------DVSPSSVYGAEHLLRLFVKLPELLVHAK 181 (229)
Q Consensus 114 ~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~------------~~~pS~iYGa~HLLRLfvkLP~ll~~t~ 181 (229)
...+.++|+++||+.|||++||.+|||++||+||.++++. +.+||++|||+|||||||+||+||+.|+
T Consensus 85 ~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t~ 164 (211)
T 2y0n_A 85 KNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMS 164 (211)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcCC
Confidence 1234689999999999999999999999999999999842 3589999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccCCCCCHHHHHhh
Q 027042 182 IEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRYHSAEDVETSAN 224 (229)
Q Consensus 182 ~d~~s~~~l~~~l~~fl~fL~~n~~~~F~-~dY~~a~~eY~~~a 224 (229)
||+++++.|+.++++||+||++|.++||. ++|++++++|+++.
T Consensus 165 ~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~~~~~~~~~~~ 208 (211)
T 2y0n_A 165 FSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTK 208 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEECC--------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCChhccCCCCHHHHhhc
Confidence 99999999999999999999999999996 89999988887653
No 3
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=85.37 E-value=8.4 Score=27.70 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCC-CCccccChhHHHHHH
Q 027042 92 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADV-SPSSVYGAEHLLRLF 170 (229)
Q Consensus 92 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~~~-~pS~iYGa~HLLRLf 170 (229)
|...|+.+.+++|+.+.. .+ .....+..-...|+.|++.+-.. +. .+++ -...++-+.+
T Consensus 4 ~~~~t~~~~~~~fl~~l~-~~-~s~~Ti~~Y~~~l~~f~~~l~~~-----------------~~~~l~~-it~~~i~~y~ 63 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ-TD-AADASIKSFRYRLKHFVEWAEER-----------------DITAMRE-LTGWKLDEYE 63 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT-TT-SCHHHHHHHHHHHHHHHHHHHHT-----------------TCCSGGG-CCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHHHc-----------------CCCChHH-CCHHHHHHHH
Confidence 677899999999999886 22 22223444444555554432100 01 1111 2344555555
Q ss_pred hhhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHc
Q 027042 171 VKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 204 (229)
Q Consensus 171 vkLP~ll~~t~~d~~s~~~l~~~l~~fl~fL~~n 204 (229)
..|- ...+.+.+++.....|..|++|+.+.
T Consensus 64 ~~l~----~~~~s~~Ti~~~ls~lr~f~~~l~~~ 93 (117)
T 3nrw_A 64 TFRR----GSDVSPATLNGEMQTLKNWLEYLARI 93 (117)
T ss_dssp HHHH----TSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH----hCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 4432 25688999999999999999999865
No 4
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=63.96 E-value=34 Score=23.80 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCCCCccccChhHHHHHHh
Q 027042 92 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFV 171 (229)
Q Consensus 92 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~~~~pS~iYGa~HLLRLfv 171 (229)
|..+|+.+++++|++......+ ..........+..||-..+|..-+ +++ ...++.+++.
T Consensus 3 ~~~~t~~~~~~~~~~~~~~~~~--~~T~~~y~~~l~~~i~~~~g~~~l------------------~~i-t~~~i~~~~~ 61 (118)
T 2kd1_A 3 PSKLSYGEYLESWFNTKRHSVG--IQTAKVLKGYLNSRIIPSLGNIKL------------------AKL-TSLHMQNYVN 61 (118)
T ss_dssp CSCSBHHHHHHHHHHHHHHHHC--HHHHHHHHHHHTTTHHHHTTSSBG------------------GGC-CHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHhhhHhhCcCCH------------------HhC-CHHHHHHHHH
Confidence 5678999999999986531101 111222222233333333443222 221 3445555554
Q ss_pred hhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHc
Q 027042 172 KLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 204 (229)
Q Consensus 172 kLP~ll~~t~~d~~s~~~l~~~l~~fl~fL~~n 204 (229)
.|- ...+.+.+++.....+..|++|..++
T Consensus 62 ~l~----~~g~s~~t~~~~~~~l~~~~~~a~~~ 90 (118)
T 2kd1_A 62 SLR----DEGLKRGTIEKIIKVIRNSLEHAIDL 90 (118)
T ss_dssp HHH----HHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 432 23467889999999999999999864
No 5
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=59.53 E-value=40 Score=23.21 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHhhhccC-CchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCCCCccccChhHHHHHH
Q 027042 92 PRTPNVDDILEKYCDYRSKKD-GLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLF 170 (229)
Q Consensus 92 P~~~tV~~IL~~Y~~~~~~~~-~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~~~~pS~iYGa~HLLRLf 170 (229)
|..+|+.+++++|++...... +.. ........+..+|...+|..-+-.. ...++.+++
T Consensus 4 ~~~~t~~~~~~~~l~~~~~~~~~~~--T~~~y~~~~~~~i~~~~g~~~l~~I-------------------t~~~i~~~~ 62 (117)
T 2kkp_A 4 PSKITVEQWLNRWLTDYAKPHLRQS--TWESYETVLRLHVIPTLGSIPLKKL-------------------QPADIQRLY 62 (117)
T ss_dssp SCCSCHHHHHHHHHHHHTSCCCSCC--CCSHHHHHHHHHHCCCCCTSCTTTC-------------------CHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHhccCCCcc--HHHHHHHHHHHHhccccCceEHHHC-------------------CHHHHHHHH
Confidence 678899999999998742111 111 1111122344455444554332222 334455555
Q ss_pred hhhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHc
Q 027042 171 VKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 204 (229)
Q Consensus 171 vkLP~ll~~t~~d~~s~~~l~~~l~~fl~fL~~n 204 (229)
..|- ...+.+.+++.....+..|++|..++
T Consensus 63 ~~l~----~~~~s~~t~~~~~~~l~~~~~~A~~~ 92 (117)
T 2kkp_A 63 ASKL----ESGLSPTRVRYIHVVLHEAMSQARES 92 (117)
T ss_dssp HHHH----HTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH----HcCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 4432 23567889999999999999998764
No 6
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=48.03 E-value=1.2e+02 Score=25.12 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHchhhhccc
Q 027042 193 KLVDLLKFLQKHQSTFFLS 211 (229)
Q Consensus 193 ~l~~fl~fL~~n~~~~F~~ 211 (229)
....|+++|-+|.+.+|.+
T Consensus 227 ~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 227 TYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHHHHHHTHHHHHC-
T ss_pred HHHHHHHHHHHhHHHhcCC
Confidence 4668999999999999863
No 7
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=36.09 E-value=1.1e+02 Score=21.29 Aligned_cols=86 Identities=12% Similarity=0.207 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCCCCccccChhHHHHHHh
Q 027042 92 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFV 171 (229)
Q Consensus 92 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~~~~pS~iYGa~HLLRLfv 171 (229)
+...|+.+++++|++.. . . .....+......+..|+...+|..-|-.. -..++..++.
T Consensus 4 ~~~~t~~~~~~~wl~~~-~-~-~~~~T~~~y~~~l~~~i~~~~g~~~l~~I-------------------t~~~i~~~~~ 61 (121)
T 2kkv_A 4 SGAYTFETIAREWHESN-K-R-WSEDHRSRVLRYLELYIFPHIGSSDIRQL-------------------KTSHLLAPIK 61 (121)
T ss_dssp CCCCSHHHHHHHHHTTC-C-S-SCHHHHHHHHHHHHHHHSSSSTTSCTTCC-------------------CSGGGHHHHH
T ss_pred cccCcHHHHHHHHHHHc-C-C-CCHHHHHHHHHHHHhhcCchhcCCCHHHc-------------------CHHHHHHHHH
Confidence 45689999999999865 2 1 11112222333455555444554322211 2234444444
Q ss_pred hhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHc
Q 027042 172 KLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 204 (229)
Q Consensus 172 kLP~ll~~t~~d~~s~~~l~~~l~~fl~fL~~n 204 (229)
.|-. ...+.+++.+...|..|++|..++
T Consensus 62 ~l~~-----~~s~~t~~~~~~~l~~~~~~A~~~ 89 (121)
T 2kkv_A 62 EVDT-----SGKHDVAQRLQQRVTAIMRYAVQN 89 (121)
T ss_dssp HHHH-----TTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----cCCHHHHHHHHHHHHHHHHHHHHc
Confidence 4321 126778899999999999998764
No 8
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=35.61 E-value=55 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhh
Q 027042 99 DILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKA 133 (229)
Q Consensus 99 ~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~ 133 (229)
+||+++.+.... .-.|++++|+..|++.
T Consensus 15 EIL~E~RkElqK-------~K~EIIeAi~~El~~~ 42 (45)
T 1use_A 15 ELLEEVKKELQK-------VKEEIIEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 566666655432 3468999999999874
No 9
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=32.42 E-value=38 Score=18.80 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHchhhh
Q 027042 189 LLQHKLVDLLKFLQKHQSTF 208 (229)
Q Consensus 189 ~l~~~l~~fl~fL~~n~~~~ 208 (229)
-+.+.+.+|++|+.+...+|
T Consensus 4 DIisTIgdfvKlI~~TV~KF 23 (26)
T 1dtc_A 4 DIISTIGDLVKWIIDTVNKF 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999877765
No 10
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=28.31 E-value=96 Score=21.46 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=27.9
Q ss_pred CcceEEeCChhHHHHHHHHHHHHhhCCceeeCCCCCCHHHHHHHHHHhh
Q 027042 60 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 108 (229)
Q Consensus 60 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~Lv~LP~~~tV~~IL~~Y~~~~ 108 (229)
...+.|.||+.|...|-.-+. . ...|+.+|+.+.++..
T Consensus 34 ~~Rlti~i~~~lh~rlK~~Aa--~---------~g~Smsdvvreli~~~ 71 (76)
T 1p94_A 34 IKRVNVNFDEEKHTRFKAACA--R---------KGTSITDVVNQLVDNW 71 (76)
T ss_dssp EEECCEEEEHHHHHHHHHHHH--H---------HTCCHHHHHHHHHHHH
T ss_pred ceeEEEEcCHHHHHHHHHHHH--H---------cCCCHHHHHHHHHHHH
Confidence 456789999999999876543 1 2358999998877643
No 11
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=22.93 E-value=29 Score=28.55 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEeCChhHHHHHHHHHHHHhhCCcee
Q 027042 64 NIQIPPPLKKQLVDDCEFITHLGKLV 89 (229)
Q Consensus 64 ~i~iP~~Lk~~LvdD~e~Itk~~~Lv 89 (229)
...+|++||.+|.-|++++.-.++.|
T Consensus 48 T~~LPeSLkALLAYD~~L~sp~~~~V 73 (225)
T 4hg1_A 48 TTELPESLXALLAYDRDLLSNYNMPV 73 (225)
T ss_dssp EECCCHHHHHHHHHCTTCBCTTSCBS
T ss_pred cccCcHHHHHHHHhhhhccCcCCCcH
Confidence 68999999999999999886444433
Done!