Query 027042
Match_columns 229
No_of_seqs 179 out of 344
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 06:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027042.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027042hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tx4a_ a.116.1.1 (A:) p50 Rho 75.6 13 0.00097 27.6 11.0 75 66-143 23-99 (196)
2 d1h41a2 d.92.2.2 (A:5-151) alp 43.7 2.6 0.00019 31.1 0.3 15 157-171 118-132 (147)
3 d1a0pa1 a.60.9.1 (A:3-100) Rec 41.7 41 0.003 21.9 8.1 82 101-204 6-87 (98)
4 d1xa6a1 a.116.1.1 (A:271-466) 35.3 72 0.0053 23.0 7.8 17 193-209 180-196 (196)
5 d1l8na2 d.92.2.2 (A:4-142) alp 30.0 5.8 0.00042 28.7 0.3 16 156-171 108-123 (139)
6 d1egwa_ d.88.1.1 (A:) Myocyte 21.9 22 0.0016 22.8 2.1 22 85-107 50-71 (71)
7 d1f7ca_ a.116.1.1 (A:) Graf {C 15.1 1.9E+02 0.014 20.4 9.6 18 193-210 170-187 (191)
8 d1jl7a_ a.1.1.2 (A:) Glycera g 13.7 45 0.0033 22.9 2.3 17 162-178 27-43 (147)
9 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 13.7 98 0.0071 19.6 3.9 27 180-206 24-50 (84)
10 d2f2ac1 a.137.12.1 (C:3-94) Gl 13.6 65 0.0047 20.9 3.0 28 177-204 13-40 (92)
No 1
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.64 E-value=13 Score=27.63 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=35.0
Q ss_pred eCChhHHHHHHHHH-HHHhhCCceeeCCCCCCH-HHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCccCCChhh
Q 027042 66 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPNV-DDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSE 143 (229)
Q Consensus 66 ~iP~~Lk~~LvdD~-e~Itk~~~Lv~LP~~~tV-~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~E 143 (229)
.+|..|..++.-=. .-+. ..-+++.|...+. .++.+.| ......+-...+.+..++.-|+.||.. |+.-|+-...
T Consensus 23 ~vP~~l~~~~~~l~~~gl~-~eGIFR~~g~~~~i~~l~~~~-~~~~~~~~~~~~~~~~va~~lK~fLr~-Lp~pLi~~~~ 99 (196)
T d1tx4a_ 23 PIPIVLRETVAYLQAHALT-TEGIFRRSANTQVVREVQQKY-NMGLPVDFDQYNALHLPAVILKTFLRE-LPEPLLTFDL 99 (196)
T ss_dssp SSCHHHHHHHHHHHHHCTT-CTTTTTSCCCHHHHHHHHHHH-HTTCCCCGGGSSCTHHHHHHHHHHHHH-SSSCTTCGGG
T ss_pred CCChHHHHHHHHHHHcCCC-CCCeeecCCcHHHHHHHHHHH-hCCCCccccccccHHHHHHHHHHHHHh-CCCCcchHHH
Confidence 47877766543210 1122 2347888887664 4444433 221111101111233455556777755 5555655443
No 2
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=43.68 E-value=2.6 Score=31.10 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=12.9
Q ss_pred CccccChhHHHHHHh
Q 027042 157 PSSVYGAEHLLRLFV 171 (229)
Q Consensus 157 pS~iYGa~HLLRLfv 171 (229)
---+||+-||||++-
T Consensus 118 rG~LYG~f~lLr~l~ 132 (147)
T d1h41a2 118 VGVLYGSFHLLRLIQ 132 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHHHH
Confidence 456899999999985
No 3
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=41.69 E-value=41 Score=21.86 Aligned_cols=82 Identities=11% Similarity=0.178 Sum_probs=46.2
Q ss_pred HHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCCCCccccChhHHHHHHhhhHHHhhcC
Q 027042 101 LEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 180 (229)
Q Consensus 101 L~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~~~~pS~iYGa~HLLRLfvkLP~ll~~t 180 (229)
|++|+.+.....+.....+.--..-|..+++.+-. .+..+.+ -+..|+-+.+..| ...
T Consensus 6 ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~-----------------~~~~~~~-i~~~~i~~yl~~l----~~~ 63 (98)
T d1a0pa1 6 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-----------------RGLTLAT-AQSDDLQALLAER----LEG 63 (98)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH-----------------TSCCTTT-CCHHHHHHHHHSC----C--
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHh-----------------ccccccc-ccHHHHHHHHHHH----Hhc
Confidence 68888887653333333444445556666554311 1112333 3566776666544 335
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc
Q 027042 181 KIEEETLTLLQHKLVDLLKFLQKH 204 (229)
Q Consensus 181 ~~d~~s~~~l~~~l~~fl~fL~~n 204 (229)
.+.+.++++-...|..|.+||.++
T Consensus 64 g~s~~Ti~r~lsalr~ff~~l~~~ 87 (98)
T d1a0pa1 64 GYKATSSARLLSAVRRLFQYLYRE 87 (98)
T ss_dssp -----CHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHHC
Confidence 677888999999999999999876
No 4
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.28 E-value=72 Score=23.01 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHchhhhc
Q 027042 193 KLVDLLKFLQKHQSTFF 209 (229)
Q Consensus 193 ~l~~fl~fL~~n~~~~F 209 (229)
....++.+|-+|.+.+|
T Consensus 180 ~~~~iv~~LI~~~~~iF 196 (196)
T d1xa6a1 180 YQKLIVQILIENEDVLF 196 (196)
T ss_dssp HHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHhhHhhC
Confidence 35567888888887766
No 5
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.02 E-value=5.8 Score=28.67 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=13.1
Q ss_pred CCccccChhHHHHHHh
Q 027042 156 SPSSVYGAEHLLRLFV 171 (229)
Q Consensus 156 ~pS~iYGa~HLLRLfv 171 (229)
.-.-+||+-||||++.
T Consensus 108 ~~G~lYGvf~Ll~~lq 123 (139)
T d1l8na2 108 DAGVLYGVFHFLRLLQ 123 (139)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 3456899999999984
No 6
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.94 E-value=22 Score=22.85 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=16.9
Q ss_pred CCceeeCCCCCCHHHHHHHHHHh
Q 027042 85 LGKLVKLPRTPNVDDILEKYCDY 107 (229)
Q Consensus 85 ~~~Lv~LP~~~tV~~IL~~Y~~~ 107 (229)
.+++...|. ++|++||+.|.+|
T Consensus 50 ~gk~~~f~s-~~~~~vl~ry~~~ 71 (71)
T d1egwa_ 50 SNKLFQYAS-TDMDKVLLKYTEY 71 (71)
T ss_dssp TCCEEEEES-SCHHHHHHHHHHC
T ss_pred CCCEEEeeC-CCHHHHHHHHhcC
Confidence 356666654 7999999999875
No 7
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=15.11 E-value=1.9e+02 Score=20.43 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHchhhhcc
Q 027042 193 KLVDLLKFLQKHQSTFFL 210 (229)
Q Consensus 193 ~l~~fl~fL~~n~~~~F~ 210 (229)
....++++|-+|...+|.
T Consensus 170 ~~~~iv~~LI~~~~~iF~ 187 (191)
T d1f7ca_ 170 FQNIVIEILIENHEKIFN 187 (191)
T ss_dssp HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 456788999999998886
No 8
>d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}
Probab=13.73 E-value=45 Score=22.94 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=8.3
Q ss_pred ChhHHHHHHhhhHHHhh
Q 027042 162 GAEHLLRLFVKLPELLV 178 (229)
Q Consensus 162 Ga~HLLRLfvkLP~ll~ 178 (229)
|..=+.|||..-|++-.
T Consensus 27 g~~~f~rlF~~~P~~~~ 43 (147)
T d1jl7a_ 27 GKECLSKFISAHPEMAA 43 (147)
T ss_dssp HHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHCHHHHH
Confidence 44444555555555444
No 9
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.66 E-value=98 Score=19.61 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHchh
Q 027042 180 AKIEEETLTLLQHKLVDLLKFLQKHQS 206 (229)
Q Consensus 180 t~~d~~s~~~l~~~l~~fl~fL~~n~~ 206 (229)
..++++..+.|...+.+-..||..|.+
T Consensus 24 ~kl~~~dk~~i~~~l~e~~~WL~~n~~ 50 (84)
T d1ud0a_ 24 GKINDEDKQKILDKCNEIISWLDKNQT 50 (84)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 347788889999999999999998853
No 10
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Probab=13.62 E-value=65 Score=20.90 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHc
Q 027042 177 LVHAKIEEETLTLLQHKLVDLLKFLQKH 204 (229)
Q Consensus 177 l~~t~~d~~s~~~l~~~l~~fl~fL~~n 204 (229)
|+...++++.+..+...++++|.|+..=
T Consensus 13 LarL~l~deE~~~~~~~l~~Il~~~~~L 40 (92)
T d2f2ac1 13 LARLQISPEETEEMANTLESILDFAKQN 40 (92)
T ss_dssp HTTCCCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999743
Done!