BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027043
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|B Chain B, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|C Chain C, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|D Chain D, Crystal Structure Of Human Pank3 In Complex With Accoa
Length = 362
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 14/178 (7%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKN-------LHLAGGGAYKFADLIKEKLGVVLDKEDE 112
G LHF +F T + ++ R KN L GGGAYKF + + L K DE
Sbjct: 73 RGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHLHKLDE 132
Query: 113 MDCLVTGANFLLKAV---HQEAFTYVDGQK----EFVQIDQNDLYPYLLVNIGSGVSMIK 165
+DCLV G ++ E + + + + + + + +D YP L+VNIGSGVS++
Sbjct: 133 LDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGVSILA 192
Query: 166 VDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGG 223
V ++R++GTS+GGGTF GL LLT C+SF+E LE++ +G++ D LV DIYGG
Sbjct: 193 VHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGG 250
>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank
pdb|3MK6|B Chain B, Substrate And Inhibitor Binding To Pank
pdb|3MK6|C Chain C, Substrate And Inhibitor Binding To Pank
pdb|3MK6|D Chain D, Substrate And Inhibitor Binding To Pank
Length = 376
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 14/178 (7%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKN-------LHLAGGGAYKFADLIKEKLGVVLDKEDE 112
G LHF +F T + ++ R KN L GGGAYKF + + L K DE
Sbjct: 87 RGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHLHKLDE 146
Query: 113 MDCLVTGANFLLKAV---HQEAFTYVDGQK----EFVQIDQNDLYPYLLVNIGSGVSMIK 165
+DCLV G ++ E + + + + + + + +D YP L+VNIGSGVS++
Sbjct: 147 LDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGVSILA 206
Query: 166 VDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGG 223
V ++R++GTS+GGGTF GL LLT C+SF+E LE++ +G++ D LV DIYGG
Sbjct: 207 VHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGG 264
>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate
Analog
Length = 382
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 14/178 (7%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKN-------LHLAGGGAYKFADLIKEKLGVVLDKEDE 112
G LHF +F T + ++ R KN L GGGAYKF + + L K DE
Sbjct: 89 RGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHLHKLDE 148
Query: 113 MDCLVTGANFLLKAV---HQEAFTYVDGQK----EFVQIDQNDLYPYLLVNIGSGVSMIK 165
+DCLV G ++ E + + + + + + + +D YP L+VNIGSGVS++
Sbjct: 149 LDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGVSILA 208
Query: 166 VDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGG 223
V ++R++GTS+GGGTF GL LLT C+SF+E LE++ +G++ D LV DIYGG
Sbjct: 209 VHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGG 266
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 123/255 (48%), Gaps = 47/255 (18%)
Query: 14 GDESESQISHLALDIGGSLIKVVYF-------------------LRSNXXXXXXXXXXXX 54
G ++ +DIGG+L+K+VYF +R
Sbjct: 18 GSKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGI 77
Query: 55 XXPVLE----------GRLHFAKFETSKIIDCLEFIRSKN-------LHLAGGGAYKFAD 97
LE G LHF +F + + ++ KN L GGGA+KF +
Sbjct: 78 RDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEE 137
Query: 98 LIKEKLGVVLDKEDEMDCLVTGANFL--------LKAVHQEAFTYVD-GQKEFVQIDQND 148
+ + L K DE+DCL+ G ++ + + E T + QK+ +D +
Sbjct: 138 DFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLD--N 195
Query: 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQG 208
YP LLVN+GSGVS++ V ++R++GTS+GGGTF GL LLT C++F+E LE++ +G
Sbjct: 196 PYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKG 255
Query: 209 NNRVIDMLVGDIYGG 223
++ +D LV DIYGG
Sbjct: 256 DSTNVDKLVKDIYGG 270
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
pdb|2I7N|B Chain B, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
Length = 360
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 104/180 (57%), Gaps = 18/180 (10%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKN-------LHLAGGGAYKFADLIKEKLGVVLDKEDE 112
+G LHF +F + + ++ KN L GGGA+KF + + + L K DE
Sbjct: 71 KGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHKLDE 130
Query: 113 MDCLVTGANFL--------LKAVHQEAFTYVD-GQKEFVQIDQNDLYPYLLVNIGSGVSM 163
+DCL+ G ++ + + E T + QK+ +D + YP LLVN+GSGVS+
Sbjct: 131 LDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLD--NPYPMLLVNMGSGVSI 188
Query: 164 IKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGG 223
+ V ++R++GTS+GGGTF GL LLT C++F+E LE++ +G++ +D LV DIYGG
Sbjct: 189 LAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGG 248
>pdb|2EWS|A Chain A, Crystal Structure Of S.Aureus Pantothenate Kinase
pdb|2EWS|B Chain B, Crystal Structure Of S.Aureus Pantothenate Kinase
Length = 287
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 147 NDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSH 206
+DL Y+ N+G+G S+ DG + R+ G GGG GLG LL+ + +L +++
Sbjct: 107 HDLADYIFANVGTGTSLHYFDGQSQ-RRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQ 165
Query: 207 QGNNRVIDMLVGDIYGGSE 225
G+ ID+ V IY +E
Sbjct: 166 HGDRNTIDLKVRHIYKDTE 184
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 66 AKFETSKIIDCLEFIRSKNLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 125
A + S + D + ++R+ NL++A GG K + + + V +D + LV G +
Sbjct: 124 ASLDFSPVGDRVAYVRNHNLYIARGG--KLGEGMSRAIAVTIDG---TETLVYG-----Q 173
Query: 126 AVHQEAFTYVDGQ--------KEFVQIDQNDLYPYLLVN 156
AVHQ F G F ++DQ+ + P +V+
Sbjct: 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 66 AKFETSKIIDCLEFIRSKNLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 125
A + S + D + ++R+ NL++A GG K + + + V +D + LV G +
Sbjct: 124 ASLDFSPVGDRVAYVRNHNLYIARGG--KLGEGMSRAIAVTIDG---TETLVYG-----Q 173
Query: 126 AVHQEAFTYVDGQ--------KEFVQIDQNDLYPYLLVN 156
AVHQ F G F ++DQ+ + P +V+
Sbjct: 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 66 AKFETSKIIDCLEFIRSKNLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 125
A + S + D + ++R+ NL++A GG K + + + V +D + LV G +
Sbjct: 124 ASLDFSPVGDRVAYVRNHNLYIARGG--KLGEGMSRAIAVTIDG---TETLVYG-----Q 173
Query: 126 AVHQEAFTYVDGQ--------KEFVQIDQNDLYPYLLVN 156
AVHQ F G F ++DQ+ + P +V+
Sbjct: 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212
>pdb|1G5Z|A Chain A, Crystal Structure Of Lyme Disease Antigen Outer Surface
Protein C (Ospc) From Borrelia Burgdorferi Strain N40
Length = 164
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 77 LEFIRSKNLHLAGGGAYKFADLIKEKLGVVLDKE 110
LE +SKN L G AY +DLI EKL V+ ++E
Sbjct: 47 LEANQSKNTSLLSG-AYAISDLIAEKLNVLKNEE 79
>pdb|3TLQ|A Chain A, Crystal Structure Of Eal-Like Domain Protein Ydiv
pdb|3TLQ|B Chain B, Crystal Structure Of Eal-Like Domain Protein Ydiv
Length = 242
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 147 NDLYPYLLVNIGSGVSMIKVDGDGKFERI 175
+ +YP +L N+G+G S +K DG F R+
Sbjct: 139 SQVYPLVLGNLGAGNSTMKAVFDGLFTRV 167
>pdb|4ES4|A Chain A, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|C Chain C, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|E Chain E, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|G Chain G, Crystal Structure Of Ydiv And Flhd Complex
Length = 237
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 147 NDLYPYLLVNIGSGVSMIKVDGDGKFERI 175
+ +YP +L N+G+G S +K DG F R+
Sbjct: 134 SQVYPLVLGNLGAGNSTMKAVFDGLFTRV 162
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 135 VDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTN 194
DG + F + N L PY+ N V D + I+G S+GGG + +G LTN
Sbjct: 116 ADGYENFTKDLLNSLIPYIESNY-------SVYTDREHRAIAGLSMGGGQSFNIG--LTN 166
Query: 195 CKSFDELLELSHQGNNRVIDMLVGD 219
F + +S N + L D
Sbjct: 167 LDKFAYIGPISAAPNTYPNERLFPD 191
>pdb|3SCY|A Chain A, Crystal Structure Of A Hypothetical Bacterial 6-
Phosphogluconolactonase (Bf1038) From Bacteroides
Fragilis Nctc 9343 At 1.50 A Resolution
Length = 361
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 82 SKNLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAF 132
S ++HL+ G Y +A + GV + K DE + +T + L +H F
Sbjct: 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNF 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.140 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,665,487
Number of Sequences: 62578
Number of extensions: 273367
Number of successful extensions: 611
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 35
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)