Query 027043
Match_columns 229
No_of_seqs 146 out of 340
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2201 Pantothenate kinase Pa 100.0 4.4E-74 9.6E-79 522.4 18.5 213 15-229 17-252 (371)
2 PLN02920 pantothenate kinase 1 100.0 1.5E-71 3.3E-76 518.2 22.7 217 13-229 10-244 (398)
3 PF03630 Fumble: Fumble ; Int 100.0 2.9E-70 6.2E-75 504.3 12.4 207 22-229 1-234 (341)
4 PLN02902 pantothenate kinase 100.0 2.7E-68 5.8E-73 531.0 23.1 227 2-229 27-293 (876)
5 PTZ00297 pantothenate kinase; 100.0 2.9E-60 6.3E-65 498.3 21.3 210 18-228 1036-1295(1452)
6 COG5146 PanK Pantothenate kina 100.0 1.3E-59 2.9E-64 415.4 12.9 193 18-229 15-223 (342)
7 TIGR00555 panK_eukar pantothen 100.0 4E-57 8.7E-62 407.3 17.2 170 22-229 1-178 (279)
8 PRK13317 pantothenate kinase; 100.0 2.7E-43 5.7E-48 317.0 17.0 166 22-228 3-172 (277)
9 TIGR03286 methan_mark_15 putat 99.0 5.2E-09 1.1E-13 99.3 11.8 157 20-220 143-313 (404)
10 TIGR00241 CoA_E_activ CoA-subs 97.5 0.0025 5.3E-08 56.2 12.9 135 23-210 2-153 (248)
11 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.013 2.8E-07 54.1 13.3 141 21-213 32-191 (293)
12 PRK14101 bifunctional glucokin 96.5 0.016 3.5E-07 57.9 9.5 121 13-162 11-155 (638)
13 TIGR02261 benz_CoA_red_D benzo 95.9 0.23 5E-06 45.2 13.1 138 23-209 3-159 (262)
14 PRK13318 pantothenate kinase; 95.7 0.19 4.1E-06 44.6 11.6 30 151-182 125-154 (258)
15 PF01869 BcrAD_BadFG: BadF/Bad 95.2 0.15 3.2E-06 45.1 9.2 30 150-179 106-135 (271)
16 PRK12408 glucokinase; Provisio 95.2 0.05 1.1E-06 50.2 6.4 117 23-162 18-158 (336)
17 PRK00292 glk glucokinase; Prov 95.1 0.085 1.8E-06 47.8 7.6 113 23-163 4-141 (316)
18 COG1924 Activator of 2-hydroxy 94.9 0.68 1.5E-05 44.4 13.1 147 19-215 133-295 (396)
19 COG1940 NagC Transcriptional r 94.8 0.67 1.5E-05 41.6 12.6 55 94-168 97-151 (314)
20 TIGR00744 ROK_glcA_fam ROK fam 94.8 1.8 3.9E-05 38.8 15.3 54 95-168 89-142 (318)
21 PF02685 Glucokinase: Glucokin 94.8 0.24 5.3E-06 45.8 9.8 117 24-168 1-148 (316)
22 PRK13321 pantothenate kinase; 94.1 1.2 2.6E-05 39.6 12.2 31 150-182 124-154 (256)
23 smart00732 YqgFc Likely ribonu 93.9 0.19 4.2E-06 37.2 5.9 18 23-40 3-20 (99)
24 PRK09557 fructokinase; Reviewe 92.4 3.7 8E-05 36.7 12.8 53 94-166 87-139 (301)
25 PRK13320 pantothenate kinase; 92.3 3.6 7.8E-05 36.7 12.4 32 149-182 113-144 (244)
26 PF05378 Hydant_A_N: Hydantoin 92.1 0.21 4.6E-06 42.4 4.2 18 23-40 1-18 (176)
27 TIGR01175 pilM type IV pilus a 91.8 0.67 1.5E-05 42.2 7.4 47 71-117 265-320 (348)
28 PF00480 ROK: ROK family; Int 91.4 5.2 0.00011 32.5 11.7 106 25-168 1-136 (179)
29 PRK10719 eutA reactivating fac 90.9 1.8 4E-05 42.5 9.8 33 151-183 147-179 (475)
30 PRK13310 N-acetyl-D-glucosamin 90.3 7.9 0.00017 34.6 12.7 55 94-168 87-141 (303)
31 TIGR00671 baf pantothenate kin 89.7 3.3 7.1E-05 36.8 9.7 31 150-182 116-146 (243)
32 PRK13311 N-acetyl-D-glucosamin 88.9 11 0.00024 33.0 12.4 56 93-168 86-141 (256)
33 PRK13331 pantothenate kinase; 87.9 11 0.00024 34.0 11.9 32 149-182 112-143 (251)
34 PRK09698 D-allose kinase; Prov 87.6 12 0.00026 33.3 12.0 51 95-166 96-146 (302)
35 PF06723 MreB_Mbl: MreB/Mbl pr 87.5 0.52 1.1E-05 44.0 3.2 44 83-126 275-321 (326)
36 PRK13326 pantothenate kinase; 83.7 33 0.00072 31.0 13.5 31 150-182 126-156 (262)
37 PRK05082 N-acetylmannosamine k 83.6 31 0.00068 30.5 13.0 52 94-166 87-138 (291)
38 PRK13324 pantothenate kinase; 80.1 31 0.00067 31.2 11.2 32 149-182 123-154 (258)
39 PRK00109 Holliday junction res 79.0 17 0.00037 29.6 8.5 92 20-124 3-109 (138)
40 COG0145 HyuA N-methylhydantoin 71.3 5.6 0.00012 40.8 4.5 21 22-42 3-23 (674)
41 PRK13328 pantothenate kinase; 70.4 43 0.00093 30.0 9.5 34 150-185 118-151 (255)
42 PRK13930 rod shape-determining 68.8 5.3 0.00012 36.1 3.4 44 84-127 283-329 (335)
43 PRK13928 rod shape-determining 68.6 6.1 0.00013 36.1 3.8 44 84-127 278-324 (336)
44 TIGR00749 glk glucokinase, pro 67.1 7.1 0.00015 35.5 3.9 56 98-163 84-140 (316)
45 PRK09604 UGMP family protein; 67.0 27 0.00058 32.4 7.7 99 94-214 93-195 (332)
46 PF11104 PilM_2: Type IV pilus 66.1 4.7 0.0001 37.0 2.5 45 72-116 258-311 (340)
47 PTZ00288 glucokinase 1; Provis 66.0 21 0.00046 34.4 7.0 133 19-164 24-200 (405)
48 PRK13929 rod-share determining 64.9 7.1 0.00015 35.8 3.5 43 84-126 281-326 (335)
49 PLN02666 5-oxoprolinase 63.6 9.3 0.0002 42.0 4.5 22 19-40 7-28 (1275)
50 TIGR03739 PRTRC_D PRTRC system 60.6 9.4 0.0002 34.8 3.4 39 85-123 277-317 (320)
51 PRK03011 butyrate kinase; Prov 59.6 18 0.00038 34.2 5.1 24 150-174 176-199 (358)
52 PF06277 EutA: Ethanolamine ut 58.7 7.8 0.00017 38.2 2.7 20 20-39 2-21 (473)
53 TIGR00329 gcp_kae1 metallohydr 56.4 69 0.0015 29.2 8.3 100 94-214 90-193 (305)
54 TIGR02259 benz_CoA_red_A benzo 55.8 34 0.00073 33.5 6.4 17 23-39 4-20 (432)
55 PF00370 FGGY_N: FGGY family o 54.6 23 0.0005 30.5 4.7 18 23-40 2-19 (245)
56 COG1521 Pantothenate kinase ty 53.7 1.2E+02 0.0026 27.6 9.2 32 149-182 121-152 (251)
57 PF00349 Hexokinase_1: Hexokin 53.3 13 0.00029 32.3 3.0 24 18-41 60-83 (206)
58 PRK13927 rod shape-determining 53.3 16 0.00034 33.1 3.6 44 84-127 279-325 (334)
59 TIGR03723 bact_gcp putative gl 51.9 67 0.0014 29.5 7.5 99 94-214 91-194 (314)
60 TIGR00904 mreB cell shape dete 50.2 20 0.00042 32.7 3.7 43 84-126 282-327 (333)
61 PRK13917 plasmid segregation p 48.8 17 0.00038 33.7 3.2 41 85-125 295-335 (344)
62 COG1077 MreB Actin-like ATPase 47.9 13 0.00029 35.2 2.2 44 84-127 286-332 (342)
63 PF03309 Pan_kinase: Type III 47.7 27 0.00059 29.8 4.0 30 149-180 119-148 (206)
64 TIGR01314 gntK_FGGY gluconate 47.4 15 0.00032 35.6 2.6 20 23-42 2-21 (505)
65 PF01968 Hydantoinase_A: Hydan 45.7 19 0.00042 32.7 2.9 22 19-40 75-96 (290)
66 TIGR01315 5C_CHO_kinase FGGY-f 40.1 24 0.00051 34.7 2.8 20 23-42 2-21 (541)
67 COG5026 Hexokinase [Carbohydra 38.4 44 0.00095 33.0 4.2 27 14-41 69-95 (466)
68 PF01548 DEDD_Tnp_IS110: Trans 38.3 87 0.0019 24.5 5.3 42 24-83 2-45 (144)
69 PF14450 FtsA: Cell division p 37.9 34 0.00073 26.7 2.9 17 24-40 2-18 (120)
70 TIGR01311 glycerol_kin glycero 37.3 26 0.00057 33.8 2.5 20 23-42 3-22 (493)
71 PF03652 UPF0081: Uncharacteri 37.0 1.6E+02 0.0036 23.7 6.8 90 22-124 2-107 (135)
72 TIGR00250 RNAse_H_YqgF RNAse H 36.3 1.8E+02 0.004 23.3 7.0 89 24-125 1-104 (130)
73 PF06406 StbA: StbA protein; 35.5 29 0.00063 31.7 2.4 36 85-120 276-315 (318)
74 TIGR03123 one_C_unchar_1 proba 34.9 28 0.00061 32.6 2.2 18 22-39 129-146 (318)
75 TIGR02259 benz_CoA_red_A benzo 34.5 2.6E+02 0.0056 27.6 8.7 93 85-209 233-329 (432)
76 PF06406 StbA: StbA protein; 34.1 39 0.00084 30.9 3.0 45 150-194 164-212 (318)
77 PRK00047 glpK glycerol kinase; 33.7 32 0.00069 33.2 2.5 20 23-42 7-26 (498)
78 PRK10640 rhaB rhamnulokinase; 33.1 67 0.0015 31.0 4.6 40 84-124 378-419 (471)
79 TIGR01315 5C_CHO_kinase FGGY-f 32.9 69 0.0015 31.5 4.7 42 84-125 446-489 (541)
80 TIGR00241 CoA_E_activ CoA-subs 32.8 64 0.0014 28.2 4.1 17 23-39 93-109 (248)
81 PRK04123 ribulokinase; Provisi 30.4 63 0.0014 31.6 4.0 41 84-124 441-484 (548)
82 PRK13930 rod shape-determining 30.3 37 0.00081 30.6 2.2 37 150-186 152-188 (335)
83 PRK15080 ethanolamine utilizat 29.9 44 0.00095 29.8 2.6 48 73-120 213-263 (267)
84 PF02782 FGGY_C: FGGY family o 29.7 46 0.001 27.3 2.5 40 84-123 152-193 (198)
85 PRK10331 L-fuculokinase; Provi 29.3 44 0.00096 32.0 2.6 20 23-42 4-23 (470)
86 COG1548 Predicted transcriptio 28.3 26 0.00057 32.6 0.8 17 21-37 3-19 (330)
87 COG1070 XylB Sugar (pentulose 28.2 49 0.0011 32.2 2.8 36 170-205 294-329 (502)
88 COG0837 Glk Glucokinase [Carbo 28.2 2.7E+02 0.0058 26.4 7.4 122 19-164 4-148 (320)
89 PTZ00294 glycerol kinase-like 27.9 47 0.001 32.2 2.6 20 23-42 4-23 (504)
90 TIGR03722 arch_KAE1 universal 27.7 4.7E+02 0.01 23.9 9.1 92 95-210 88-183 (322)
91 PLN02295 glycerol kinase 27.5 48 0.001 32.2 2.6 20 23-42 2-21 (512)
92 PF00012 HSP70: Hsp70 protein; 26.8 58 0.0012 31.8 3.0 36 149-185 187-228 (602)
93 PRK09605 bifunctional UGMP fam 26.7 1.6E+02 0.0035 28.7 6.1 94 94-210 90-186 (535)
94 COG4819 EutA Ethanolamine util 26.3 49 0.0011 32.0 2.3 20 19-38 3-22 (473)
95 PF04260 DUF436: Protein of un 26.2 37 0.0008 29.3 1.3 13 22-34 121-133 (172)
96 PRK15027 xylulokinase; Provisi 26.2 60 0.0013 31.2 2.9 20 23-42 2-21 (484)
97 PRK13322 pantothenate kinase; 26.0 86 0.0019 27.9 3.7 32 149-182 115-146 (246)
98 TIGR02628 fuculo_kin_coli L-fu 25.9 55 0.0012 31.3 2.6 20 23-42 3-22 (465)
99 PF11104 PilM_2: Type IV pilus 25.9 4.4E+02 0.0094 24.1 8.5 96 94-208 140-237 (340)
100 PRK10939 autoinducer-2 (AI-2) 25.5 56 0.0012 31.8 2.6 20 23-42 5-24 (520)
101 PRK13927 rod shape-determining 24.8 57 0.0012 29.5 2.4 35 151-185 149-183 (334)
102 smart00842 FtsA Cell division 23.9 61 0.0013 27.0 2.3 18 24-41 2-19 (187)
103 KOG3040 Predicted sugar phosph 23.6 5.7E+02 0.012 23.3 11.1 128 59-196 14-175 (262)
104 TIGR02350 prok_dnaK chaperone 23.2 78 0.0017 31.4 3.2 36 149-185 182-223 (595)
105 PTZ00340 O-sialoglycoprotein e 23.1 2.3E+02 0.0051 26.8 6.2 92 93-209 90-188 (345)
106 COG2441 Predicted butyrate kin 23.0 67 0.0015 30.3 2.5 63 149-211 162-251 (374)
107 PF14034 Spore_YtrH: Sporulati 22.9 62 0.0013 25.7 1.9 31 177-207 12-42 (102)
108 PF03744 BioW: 6-carboxyhexano 22.9 98 0.0021 28.0 3.4 26 59-85 211-236 (239)
109 PLN02295 glycerol kinase 22.3 1.1E+02 0.0024 29.7 4.0 42 84-125 415-458 (512)
110 TIGR01234 L-ribulokinase L-rib 22.1 1.1E+02 0.0025 29.8 4.1 41 84-124 438-481 (536)
111 COG0816 Predicted endonuclease 22.0 2.2E+02 0.0048 23.6 5.1 93 21-125 2-109 (141)
112 PRK13329 pantothenate kinase; 21.7 1.2E+02 0.0026 27.1 3.8 33 149-183 118-150 (249)
113 cd06407 PB1_NLP A PB1 domain i 21.7 38 0.00083 25.3 0.5 44 159-219 39-82 (82)
114 PRK13327 pantothenate kinase; 21.3 1.5E+02 0.0032 26.5 4.3 35 149-185 111-145 (242)
115 TIGR01234 L-ribulokinase L-rib 21.2 77 0.0017 31.0 2.7 20 23-42 3-23 (536)
116 COG0145 HyuA N-methylhydantoin 20.8 69 0.0015 33.0 2.3 18 22-39 279-296 (674)
117 PRK04123 ribulokinase; Provisi 20.8 79 0.0017 30.9 2.7 18 23-40 5-22 (548)
118 cd06409 PB1_MUG70 The MUG70 pr 20.6 66 0.0014 24.6 1.6 45 158-219 41-85 (86)
119 TIGR03123 one_C_unchar_1 proba 20.5 52 0.0011 30.8 1.3 16 24-39 1-16 (318)
120 PTZ00107 hexokinase; Provision 20.3 1.3E+02 0.0027 29.7 3.9 25 18-42 71-95 (464)
121 TIGR03882 cyclo_dehyd_2 bacter 20.2 3.2E+02 0.007 23.3 6.0 31 178-208 25-55 (193)
No 1
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.4e-74 Score=522.40 Aligned_cols=213 Identities=56% Similarity=0.947 Sum_probs=188.5
Q ss_pred CCCCCCCCeEEEEeCCceeEEEEEeecCCCCCccc-----CCCCCCCCCcCCceEEeEecccCHHHHHHHHHhc------
Q 027043 15 DESESQISHLALDIGGSLIKVVYFLRSNGSGGSVD-----DSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSK------ 83 (229)
Q Consensus 15 ~~~~~~~~~igiDIGGSL~Kivy~~~~~~~~~~~~-----~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~~------ 83 (229)
++ .+.++|+|+||||||+|+|||++.+....++. ....+..+...++|+|++|++.+|+.|++|++..
T Consensus 17 ~~-~~~~~~~~~DigGtl~KlvY~s~~~~~~~~~~~~~~~n~~~~~~~~~~~rl~~~~~e~~~~~~~L~Fi~~~~~~~~~ 95 (371)
T KOG2201|consen 17 NN-KPMISHFAMDIGGTLVKLVYFSPVDISPEEEESEVILNGAYGKTGYRDGRLHFINFETFKIDGCLNFIRFNITDHPV 95 (371)
T ss_pred cc-cccCceEEEecCCcEEEEEEEecCCCCcchhhhhcccccccccccccccEEEEEEeeecCccchhHHhhcchhhccc
Confidence 45 78899999999999999999999876332111 1222334678899999999999999999999852
Q ss_pred --------CceecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeee----cCCCCCcc
Q 027043 84 --------NLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQ----IDQNDLYP 151 (229)
Q Consensus 84 --------~i~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~----~~~~~~yP 151 (229)
.+++||||||||+++|++++++++.|+|||+|||+|++|+++++|+|||||.+...+.+. .+.+++||
T Consensus 96 k~~~~~~~~i~aTGGGA~Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d~~yP 175 (371)
T KOG2201|consen 96 KNFSKLTTVICATGGGAYKFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLDSPYP 175 (371)
T ss_pred cccccceeEEEEeCCcceeHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccCCCCc
Confidence 246699999999999999999999999999999999999999999999999988654331 22356999
Q ss_pred EEEEecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeeeecCCCCCcCC
Q 027043 152 YLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 229 (229)
Q Consensus 152 yLlVNIGSGvSi~kV~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~~i 229 (229)
||||||||||||+||++|++|+||||||+||||||||++|||||++|||+|+||++|||++|||||+||||| +|+++
T Consensus 176 yLLVNIGSGVSIlkV~~~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg-~y~~f 252 (371)
T KOG2201|consen 176 YLLVNIGSGVSILKVDGPDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGG-DYSRF 252 (371)
T ss_pred eEEEEcCCCeEEEEEecCCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCc-cHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 89975
No 2
>PLN02920 pantothenate kinase 1
Probab=100.00 E-value=1.5e-71 Score=518.19 Aligned_cols=217 Identities=78% Similarity=1.249 Sum_probs=194.5
Q ss_pred CCCCCCCCCCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHHHHHHhc---------
Q 027043 13 NGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSK--------- 83 (229)
Q Consensus 13 ~~~~~~~~~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~~--------- 83 (229)
...++.+.++||||||||||+|+|||++................+..+|+|||++|||++|++|++|++++
T Consensus 10 ~~~~~~~~~~~~a~Diggsl~Klvy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~T~~i~~~i~fl~~~~~~~~~~~~ 89 (398)
T PLN02920 10 DGNSSPIQISHLALDIGGSLIKLVYFSRNSGDSEDPRNDSSVKSDGVNGRLHFAKFETRKINDCLEFISSNKLHHGGFQH 89 (398)
T ss_pred CcCCCccceeEEEEEcCCceEEEEEEeccCCccccccccccccccCCCceEEEEEecccCHHHHHHHHHhcccccccccc
Confidence 34677888999999999999999999976542211111111122468999999999999999999999854
Q ss_pred ---------CceecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEE
Q 027043 84 ---------NLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLL 154 (229)
Q Consensus 84 ---------~i~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLl 154 (229)
.|++|||||+||+++|+++++++++|+|||+|+++|++||++++|+|+|+|.+.+++|++++..++|||||
T Consensus 90 ~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~~~~~~~~~~~lyPyLL 169 (398)
T PLN02920 90 HENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHNDLYPYLL 169 (398)
T ss_pred ccccCCCceEEEEECCcHHHHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCcccccccCccccCceEE
Confidence 35689999999999999999999999999999999999999999999999999999999888789999999
Q ss_pred EecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeeeecCCCCCcCC
Q 027043 155 VNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 229 (229)
Q Consensus 155 VNIGSGvSi~kV~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~~i 229 (229)
|||||||||+||+++++|+|||||+|||||||||++|||+++|||||++||++||+++|||+|+|||||++|+++
T Consensus 170 VNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDIYGg~~y~~~ 244 (398)
T PLN02920 170 VNIGSGVSMIKVDGDGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKI 244 (398)
T ss_pred EEcCCCEEEEEEeCCCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998899875
No 3
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=100.00 E-value=2.9e-70 Score=504.35 Aligned_cols=207 Identities=57% Similarity=1.042 Sum_probs=169.6
Q ss_pred CeEEEEeCCceeEEEEEeecCCCCCccc-----------CCCCCCCCCcCCceEEeEecccCHHHHHHHHHhc-------
Q 027043 22 SHLALDIGGSLIKVVYFLRSNGSGGSVD-----------DSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSK------- 83 (229)
Q Consensus 22 ~~igiDIGGSL~Kivy~~~~~~~~~~~~-----------~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~~------- 83 (229)
+||||||||||+|||||+|.+....... ..........+|+|||++|||++|++|++|++++
T Consensus 1 ~~faiDIGGTL~KlVYfs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~Fi~FeT~~ie~~i~fi~~~~~~~~~~ 80 (341)
T PF03630_consen 1 SHFAIDIGGTLVKLVYFSPVDSSPDNQDKEDDSLRSLRREMHEIESKERGGRLHFIKFETKNIEECIDFIKENILEHKGI 80 (341)
T ss_dssp -EEEEEE-SSEEEEEEEEESS--CHHHHHCHHHHHHHHH-EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHS--S-TTG
T ss_pred CeEEEEcCCceEEEEEEeecCCCcccccccccchhhhhhhhccccccCcCCEEEEEEechhhHHHHHHHHHHhhhhcccc
Confidence 5999999999999999998875321100 0001112568899999999999999999999983
Q ss_pred -----CceecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCC-e---eeeecCCCCCccEEE
Q 027043 84 -----NLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQ-K---EFVQIDQNDLYPYLL 154 (229)
Q Consensus 84 -----~i~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~-~---~~~~~~~~~~yPyLl 154 (229)
.|++||||||||+++|++++++++.|+|||+|+|+|++||++++|+|+|+|++.. . ++.+.+..++|||||
T Consensus 81 ~~~~~~I~aTGGGA~Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~~~~Pyll 160 (341)
T PF03630_consen 81 SQKITKICATGGGAFKYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNSDIYPYLL 160 (341)
T ss_dssp GGCSSEEEEESTTHHHHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTSS-SSEEE
T ss_pred CccceEEEEeCCcHHHHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCCCCCcEEE
Confidence 3677999999999999999999999999999999999999999999999999653 1 235667789999999
Q ss_pred EecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeeeecCCCCCcCC
Q 027043 155 VNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 229 (229)
Q Consensus 155 VNIGSGvSi~kV~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~~i 229 (229)
|||||||||+||+++++|+|||||+|||||||||++||||++||||+++||++||+++|||+|+||||+ +|+++
T Consensus 161 vniGsGvSi~~v~~~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DIyg~-~y~~~ 234 (341)
T PF03630_consen 161 VNIGSGVSILKVEGPNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDIYGG-DYNKI 234 (341)
T ss_dssp EEESSSEEEEEEEETTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHHHSS--BGGG
T ss_pred EEcCCceEEEEEeCCCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeeccCC-CcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 79753
No 4
>PLN02902 pantothenate kinase
Probab=100.00 E-value=2.7e-68 Score=531.03 Aligned_cols=227 Identities=71% Similarity=1.173 Sum_probs=202.0
Q ss_pred CCCCcccCCCCC--------CCCCCCCCCeEEEEeCCceeEEEEEeecCCCCCc---cc---------CCCCCCCCCcCC
Q 027043 2 DVKKPASQENLN--------GDESESQISHLALDIGGSLIKVVYFLRSNGSGGS---VD---------DSGKKSDPVLEG 61 (229)
Q Consensus 2 ~~~~~~~~~~~~--------~~~~~~~~~~igiDIGGSL~Kivy~~~~~~~~~~---~~---------~~~~~~~~~~~g 61 (229)
|++++++++... +|| ++.++||++||||||+|||||++....+.+ .. +...+..+..+|
T Consensus 27 ~~~~~~~~~~~~~~~~~i~lp~~-~~~i~h~~~digg~l~klvy~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 105 (876)
T PLN02902 27 DLSKAAIQGNLEERDPTILLPNQ-SDDISHLALDIGGSLIKLVYFSRHEDRSTDDKRKRTIKERLGITNGNRRSYPILGG 105 (876)
T ss_pred CccccccccccccCCCCccCCCC-CCcceeEEEecCCceEEEEEEeccCCccccccccccccccccccccccccccCCCc
Confidence 566666666544 366 999999999999999999999987642221 00 112233467899
Q ss_pred ceEEeEecccCHHHHHHHHHhc--------------------CceecCCchhhchHHHHHHhCCccceechhhhhhhhHH
Q 027043 62 RLHFAKFETSKIIDCLEFIRSK--------------------NLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGAN 121 (229)
Q Consensus 62 ~l~F~~f~t~~i~~~i~~i~~~--------------------~i~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~ 121 (229)
+|||++|||++|++|++|++++ .|+.||||||||+++|+++++++++|+|||+|+++|++
T Consensus 106 rl~F~~fet~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~aTGGGA~K~~~~~~~~l~~~l~k~DEm~~li~Gl~ 185 (876)
T PLN02902 106 RLHFVKFETSKINECLDFISSKQLHRGGIHSWLSKAPPNGNGVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGAN 185 (876)
T ss_pred eEEEEEcCcccHHHHHHHHHHhcccccchhhhccccCCCCceEEEEeCCccccHHHHHHHHhCCCeeeecHHHHHHHHHH
Confidence 9999999999999999999964 24679999999999999999999999999999999999
Q ss_pred HHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHH
Q 027043 122 FLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDEL 201 (229)
Q Consensus 122 fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdei 201 (229)
||++++++|+|+|.+++++|++++..++||||||||||||||+||+++++|+|||||+|||||||||++||||++|||||
T Consensus 186 fLl~~i~~e~f~~~~~~~~~~~~~~~~lyPyLLVNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEl 265 (876)
T PLN02902 186 FLLKAIRHEAFTHMEGEKEFVQIDQNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDEL 265 (876)
T ss_pred HHHhhCcchheeeccccccccccCccCCCceEEEEcCCceEEEEEecCCcEEEecccccccHhHHHHHHHHcCCCCHHHH
Confidence 99999999999999888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCcCceEeeeecCCCCCcCC
Q 027043 202 LELSHQGNNRVIDMLVGDIYGGSEYSKV 229 (229)
Q Consensus 202 l~lA~~Gd~~~vDmlV~DIYGg~dY~~i 229 (229)
++||++||+++|||+|+|||||++|+++
T Consensus 266 l~LA~~Gd~~~vDllVgDIYGg~~y~~~ 293 (876)
T PLN02902 266 LELSQRGDNSAIDMLVGDIYGGMDYSKI 293 (876)
T ss_pred HHHHhcCCccccCeeeccccCCCCcCCC
Confidence 9999999999999999999998899875
No 5
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=2.9e-60 Score=498.29 Aligned_cols=210 Identities=36% Similarity=0.653 Sum_probs=179.6
Q ss_pred CCCCCeEEEEeCCceeEEEEEeecCC-C--------CCccc-CCC-----------------CCCCCCcCCceEEeEecc
Q 027043 18 ESQISHLALDIGGSLIKVVYFLRSNG-S--------GGSVD-DSG-----------------KKSDPVLEGRLHFAKFET 70 (229)
Q Consensus 18 ~~~~~~igiDIGGSL~Kivy~~~~~~-~--------~~~~~-~~~-----------------~~~~~~~~g~l~F~~f~t 70 (229)
-+.--.++||||||++|+||+.|... . ..... ..+ +.+++..+|+|||++|+|
T Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~f~~f~t 1115 (1452)
T PTZ00297 1036 FSLQVPVTIDIGGTFAKIAYVQPPGGFAFPTYIVHEASSLSEKLGLRTFHFFADAEAAESELRTRPHSRVGTLRFAKIPS 1115 (1452)
T ss_pred ccccCceEEecCceeEEEEEEeCCCCCCCcchhhhhhhhhhhccCccccccccChHHhhhhhccCCCCCceEEEEEEecc
Confidence 45567899999999999999998843 1 11110 111 223467899999999999
Q ss_pred cCHHHHHHHHHhc------------CceecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCC
Q 027043 71 SKIIDCLEFIRSK------------NLHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQ 138 (229)
Q Consensus 71 ~~i~~~i~~i~~~------------~i~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~ 138 (229)
++|++|++|++++ .|++||||||||+++|++++|+++.|+|||+|+++|++||++++++|+|+|+...
T Consensus 1116 ~~i~~~~~~l~~~~~~~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~~~~~~~dEm~~li~G~~~l~~~~~~~~f~~~~~~ 1195 (1452)
T PTZ00297 1116 KQIPDFADYLAGSHAINYYKPQYRTKVRATGGGAFKYASVAKKVLGINFSVMREMDAVVKGLNLVIRVAPESIFTVDPST 1195 (1452)
T ss_pred cCHHHHHHHHHhhhhhcccCcCCceEEEEeCCcHHHHHHHHHHHhCCCcceecHHHHHHHHHHHHHhcCCceEEEecccc
Confidence 9999999999853 4678999999999999999999999999999999999999999999999998743
Q ss_pred ee-----ee--ecCCCCCccEEEEecCCceEEEEEeCC-CceEEeeccccCchhHHhhhhhhcCCCCHHHHHH---HhhC
Q 027043 139 KE-----FV--QIDQNDLYPYLLVNIGSGVSMIKVDGD-GKFERISGTSVGGGTFWGLGRLLTNCKSFDELLE---LSHQ 207 (229)
Q Consensus 139 ~~-----~~--~~~~~~~yPyLlVNIGSGvSi~kV~~~-~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~---lA~~ 207 (229)
.+ +. +.+..++||||||||||||||+||+++ ++|+|||||+|||||||||++||||++|||||++ ||++
T Consensus 1196 ~~~~~~~~~~~~~~~~~~yp~llvNIGSGvSi~kv~~~~~~~~RvgGt~iGGGT~~GL~~llt~~~~f~e~l~~~~la~~ 1275 (1452)
T PTZ00297 1196 GVHHPHQLVSPPGDGFSPFPCLLVNIGSGISIIKCLGPDGSHVRVGGSPIGGATFWGLVRTMTNVTSWEEVMEIMRLDGP 1275 (1452)
T ss_pred ccccccccccCccccCCCCceEEEEccCceEEEEEecCCCcEEEecCcccccHhHHHHHHHhcCCCCHHHHHHHHHHhhC
Confidence 21 11 123457999999999999999999997 6899999999999999999999999999999998 7999
Q ss_pred CCCCcCceEeeeecCCCCCcC
Q 027043 208 GNNRVIDMLVGDIYGGSEYSK 228 (229)
Q Consensus 208 Gd~~~vDmlV~DIYGg~dY~~ 228 (229)
|||+||||||+|||| .+|.+
T Consensus 1276 Gd~~~vDllVgDIyg-~~~~~ 1295 (1452)
T PTZ00297 1276 GDNKNVDLLVGDIYG-YNAKD 1295 (1452)
T ss_pred CCccccceEEeeccC-CCccc
Confidence 999999999999999 47754
No 6
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-59 Score=415.44 Aligned_cols=193 Identities=44% Similarity=0.798 Sum_probs=174.3
Q ss_pred CCCCCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHHHHHHh----------cC--c
Q 027043 18 ESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRS----------KN--L 85 (229)
Q Consensus 18 ~~~~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~----------~~--i 85 (229)
.+.+.++||||||||+|+|| +|. ...||.|..++|.+||+|++|+.. ++ +
T Consensus 15 ~~n~~~vaiDiGGtLaKvv~-sp~-----------------~snrl~F~t~eT~kId~~ve~l~~li~~h~k~C~~~~~l 76 (342)
T COG5146 15 ANNVMKVAIDIGGTLAKVVQ-SPS-----------------QSNRLTFKTEETKKIDQVVEWLNNLIQQHEKLCLTKITL 76 (342)
T ss_pred ccceEEEEEecCceeeeeee-Ccc-----------------cccceeeehHhhhhHHHHHHHHHHHHHHHHhhhhheeeE
Confidence 46689999999999999999 432 345899999999999999999983 11 3
Q ss_pred eecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeee--ee--cCCCCCccEEEEecCCce
Q 027043 86 HLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEF--VQ--IDQNDLYPYLLVNIGSGV 161 (229)
Q Consensus 86 ~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~--~~--~~~~~~yPyLlVNIGSGv 161 (229)
..||||||||+|.+.+.+.+++.|++||+|++.|++|+..+||.|+|++++...+- +. -+.+++||||||||||||
T Consensus 77 iatGGga~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~IP~evFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGv 156 (342)
T COG5146 77 IATGGGAYKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIPAEVFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGV 156 (342)
T ss_pred EecCCcchhhHHHHhhhccceeeecchHHHHHhcccceeeeccHHHeeeeccccchhhhhhhhccccccceeeEeccCCe
Confidence 45999999999999999999999999999999999999999999999999875542 21 124689999999999999
Q ss_pred EEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeeeecCCCCCcCC
Q 027043 162 SMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 229 (229)
Q Consensus 162 Si~kV~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~~i 229 (229)
||+||++|++|+|||||++||||+|||.+|||++++||+|++||+.|||+.|||+|+|||| +||+++
T Consensus 157 Silkvtgpsqf~RvGGsslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg-~dy~~~ 223 (342)
T COG5146 157 SILKVTGPSQFERVGGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYG-DDYEEP 223 (342)
T ss_pred EEEEecCcchhccccccccCcchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhcc-CccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 699975
No 7
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=100.00 E-value=4e-57 Score=407.28 Aligned_cols=170 Identities=54% Similarity=0.982 Sum_probs=158.8
Q ss_pred CeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHHHHHHh--------cCceecCCchh
Q 027043 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRS--------KNLHLAGGGAY 93 (229)
Q Consensus 22 ~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~--------~~i~~TGGGA~ 93 (229)
+|+||||||||||+||++ .+++++|.+|++.++++|++|+++ ..+++|||||+
T Consensus 1 ~~iGiDiGgT~~Kiv~~~-------------------~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~TGgGa~ 61 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEE-------------------PKGRRKFKTFETTNIDKFIEWLKNQIHRHSRITTLCATGGGAF 61 (279)
T ss_pred CeEEEEeCcceEEEEEEc-------------------CCCcEEEEEeecccHHHHHHHHHHHHHhhcCceEEEEECCcHH
Confidence 589999999999999976 467899999999999999999984 34688999999
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCceE
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFE 173 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~~~~~~ 173 (229)
||++.|+..++++++|+|||+|+++|++||+++.++ .++||||+|||||||||++|+++ +|+
T Consensus 62 k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~-----------------~~~~p~llvnIGsGvSi~~v~~~-~~~ 123 (279)
T TIGR00555 62 KFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPK-----------------DDIYPYLLVNIGTGTSILYVDGD-NYE 123 (279)
T ss_pred HHHHHhccccCCcccchhHHHHHHHHHHHHhhcccC-----------------CCCCceEEEEecCCeEEEEEcCc-cEE
Confidence 999999999999999999999999999999976642 47999999999999999999997 999
Q ss_pred EeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeeeecCCCCCcCC
Q 027043 174 RISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 229 (229)
Q Consensus 174 RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~~i 229 (229)
|||||++||||||||++||||++||+|+++||++||+++|||+|+||||+ +|+++
T Consensus 124 Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIYg~-~y~~~ 178 (279)
T TIGR00555 124 RVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGG-DYSES 178 (279)
T ss_pred EEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccccccccccCC-CCCCC
Confidence 99999999999999999999999999999999999999999999999996 89864
No 8
>PRK13317 pantothenate kinase; Provisional
Probab=100.00 E-value=2.7e-43 Score=316.97 Aligned_cols=166 Identities=33% Similarity=0.600 Sum_probs=150.7
Q ss_pred CeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHHHHHHh----cCceecCCchhhchH
Q 027043 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRS----KNLHLAGGGAYKFAD 97 (229)
Q Consensus 22 ~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~----~~i~~TGGGA~k~~~ 97 (229)
.++|||||||+||+||++ ..+.++|.+|++...+.+++|+.+ ..+++|||||+++++
T Consensus 3 ~~iGIDiGstt~K~v~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~TG~g~~~~~~ 63 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLE-------------------EKKQRTFKTEYSAEGKKVIDWLINLQDIEKICLTGGKAGYLQQ 63 (277)
T ss_pred ceEEEEeCcccEEEEEEc-------------------CCCeEEEEeeccHHHHHHHHHhhccCCceEEEEECcchhhhhH
Confidence 579999999999999987 356788999999999999999864 357889999999998
Q ss_pred HHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCceEEeec
Q 027043 98 LIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISG 177 (229)
Q Consensus 98 ~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~~~~~~RVgG 177 (229)
++ .++++++|+|||+|+++|++||+++.. .+.+||++||||||+||++|++ ++++|++|
T Consensus 64 ~~--~~~~~~~~v~E~~a~~~g~~~l~~~~~------------------~~~~~~~i~~iG~g~si~~~~g-~~~~r~~G 122 (277)
T PRK13317 64 LL--NYGYPIAEFVEFEATGLGVRYLLKEEG------------------HDLNDYIFTNIGTGTSIHYVDG-NSQRRVGG 122 (277)
T ss_pred HH--hcCCCeeeeHHHHHHHHHHHHHHHhcC------------------CCCCcEEEEEecCceEEEEEeC-CceEEEcc
Confidence 76 478999999999999999999997432 4689999999999999999988 58999999
Q ss_pred cccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeeeecCCCCCcC
Q 027043 178 TSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSK 228 (229)
Q Consensus 178 ssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~~ 228 (229)
|++||||+|||++|||++.||+|+++||++||++++||+|+|||+. +|+.
T Consensus 123 t~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~-~~~~ 172 (277)
T PRK13317 123 TGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKG-PLPP 172 (277)
T ss_pred ccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccccCC-CCCC
Confidence 9999999999999999999999999999999999999999999995 6653
No 9
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.97 E-value=5.2e-09 Score=99.27 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=108.5
Q ss_pred CCCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHH-HHHHhc--------CceecCC
Q 027043 20 QISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCL-EFIRSK--------NLHLAGG 90 (229)
Q Consensus 20 ~~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i-~~i~~~--------~i~~TGG 90 (229)
....+|||+|+|+||+|+++. .. ..........++...+++++ +|+++. .+..||.
T Consensus 143 ~g~~lGIDiGSTttK~Vl~dd-~~--------------Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl~~~di~~i~~TGy 207 (404)
T TIGR03286 143 EGLTLGIDSGSTTTKAVVMED-NE--------------VIGTGWVPTTKVIESAEEAVERALEEAGVSLEDVEAIGTTGY 207 (404)
T ss_pred CCEEEEEEcChhheeeEEEcC-Ce--------------EEEEEEeecccHHHHHHHHHHHHHHHcCCCccceeEEEeeee
Confidence 346899999999999999761 10 00000011223444566677 566642 2466999
Q ss_pred chhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCce-EEEEEeCC
Q 027043 91 GAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGV-SMIKVDGD 169 (229)
Q Consensus 91 GA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGv-Si~kV~~~ 169 (229)
|.....+.+ +.+. .++|+.|..+|+.||....| ....+++||.== -.++++ +
T Consensus 208 GR~~i~~~~----~ad~-iv~EItaha~GA~~L~p~~~---------------------~v~TIIDIGGQDsK~I~l~-~ 260 (404)
T TIGR03286 208 GRFTIGEHF----GADL-IQEELTVNSKGAVYLADKQE---------------------GPATVIDIGGMDNKAISVW-D 260 (404)
T ss_pred cHHHHhhhc----CCCc-eEEEEhhHHHHHHHhcccCC---------------------CCcEEEEeCCCceEEEEEc-C
Confidence 987664433 2222 27999999999999963222 236888998732 255654 3
Q ss_pred CceE--Eeecccc--CchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeeee
Q 027043 170 GKFE--RISGTSV--GGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDI 220 (229)
Q Consensus 170 ~~~~--RVgGssi--GGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DI 220 (229)
+... +.++... +|++|..++++| .-+++|+-++|.+++.+++||...++
T Consensus 261 G~v~dF~MNdkCAAGTGrFLE~~A~~L--gi~ieEl~~lA~~~~~~pv~IsS~Ct 313 (404)
T TIGR03286 261 GIPDNFTMGGICAGASGRFLEMTAKRL--GVDITELGKLALKGMPEKVRMNSYCI 313 (404)
T ss_pred CceeeEEEcCcccccCcHHHHHHHHHh--CCCHHHHHHHHHhCCCCCCCccCccc
Confidence 4444 8888888 889999999999 56899999999999999999987764
No 10
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.50 E-value=0.0025 Score=56.17 Aligned_cols=135 Identities=23% Similarity=0.378 Sum_probs=81.2
Q ss_pred eEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccC-HHH---HH-HHHHh--------cCceecC
Q 027043 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSK-IID---CL-EFIRS--------KNLHLAG 89 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~-i~~---~i-~~i~~--------~~i~~TG 89 (229)
-+|||+|.|.+|.|-++ ... .+...+.++.. .+. ++ +.+++ ..+.+||
T Consensus 2 ~lGIDiGtts~K~vl~d-~g~------------------il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg 62 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DGK------------------VIGYKWLDTTPVIEETARAILEALKEAGIGLEPIDKIVATG 62 (248)
T ss_pred EEEEEcChhheEEEEEc-CCE------------------EEEEEEecCCCCHHHHHHHHHHHHHHcCCChhheeEEEEEC
Confidence 47999999999999986 211 12222222221 111 11 22222 1256688
Q ss_pred CchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCC-ceEEEEEeC
Q 027043 90 GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGS-GVSMIKVDG 168 (229)
Q Consensus 90 GGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGS-GvSi~kV~~ 168 (229)
-|.-... + .+ ..++|+.|..+|+.++.... =.+++||. .+.++.+++
T Consensus 63 ~~~~~v~--~---~~---~~~~ei~~~~~g~~~~~~~~------------------------~~vidiGgqd~k~i~~~~ 110 (248)
T TIGR00241 63 YGRHKVG--F---AD---KIVTEISCHGKGANYLAPEA------------------------RGVIDIGGQDSKVIKIDD 110 (248)
T ss_pred CCccccc--c---cC---CceEEhhHHHHHHHHHCCCC------------------------CEEEEecCCeeEEEEECC
Confidence 8753222 1 11 25899999999999995211 14889965 666777774
Q ss_pred CCceE---EeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCC
Q 027043 169 DGKFE---RISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNN 210 (229)
Q Consensus 169 ~~~~~---RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~ 210 (229)
++.. .-.-.+.|+|.|+--..-..| -+++|+-++|.++.+
T Consensus 111 -g~~~~~~~n~~ca~Gtg~f~e~~a~~l~-~~~~e~~~~~~~~~~ 153 (248)
T TIGR00241 111 -GKVDDFTMNDKCAAGTGRFLEVTARRLG-VSVEELGSLAEKADR 153 (248)
T ss_pred -CcEeeeeecCcccccccHHHHHHHHHcC-CCHHHHHHHHhcCCC
Confidence 5443 334466777755544433345 589999999988764
No 11
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.11 E-value=0.013 Score=54.08 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=85.6
Q ss_pred CCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCce-EEeEeccc-----CHHHHHHHH-Hhc--------Cc
Q 027043 21 ISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRL-HFAKFETS-----KIIDCLEFI-RSK--------NL 85 (229)
Q Consensus 21 ~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l-~F~~f~t~-----~i~~~i~~i-~~~--------~i 85 (229)
+..+|||||.|.+|+|.++. +++ .+...++. ...++++-+ ++. .+
T Consensus 32 m~~~GIDiGStt~K~Vlld~--------------------~~i~~~~~~~tg~~~~~~a~~~l~~~l~~~g~~~~~v~~~ 91 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD--------------------GELYGYNSMRTGNNSPDSAKNALQGIMDKIGMKLEDINYV 91 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC--------------------CEEEEEEeecCCCCHHHHHHHHHHHHHHHcCCcccceEEE
Confidence 56799999999999999871 123 23333433 223344322 221 14
Q ss_pred eecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCC-ceEEE
Q 027043 86 HLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGS-GVSMI 164 (229)
Q Consensus 86 ~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGS-GvSi~ 164 (229)
..||-|...... .-..+.|+.|..+|+.|+.. | ++ --++.||- -.-++
T Consensus 92 ~~TGyGr~~~~~--------a~~~v~EItaha~Ga~~~~p--p-~v--------------------~tIIDIGGQDsK~I 140 (293)
T TIGR03192 92 VGTGYGRVNVPF--------AHKAITEIACHARGANYMGG--N-AV--------------------RTILDMGGQDCKAI 140 (293)
T ss_pred EEECcchhhcch--------hhcceeeHHHHHHHHHHhcC--C-CC--------------------CEEEEeCCCceEEE
Confidence 569999643321 11248999999999999841 1 11 14556654 23355
Q ss_pred EEeCC---CceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcC
Q 027043 165 KVDGD---GKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVI 213 (229)
Q Consensus 165 kV~~~---~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~v 213 (229)
+++.+ .+|..=.-++-|-|.|+=-..-..|. +.+|+-++|.+.+.+.+
T Consensus 141 ~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi-~leel~~~a~~~~~~p~ 191 (293)
T TIGR03192 141 HCDEKGKVTNFLMNDKCAAGTGRGMEVISDLMQI-PIADLGPRSFDVETEPE 191 (293)
T ss_pred EEcCCCcEeeeeecCcccccccHHHHHHHHHcCC-CHHHHHHHHHhcCCCCC
Confidence 55432 25666666777888888777666674 78888888855543333
No 12
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.46 E-value=0.016 Score=57.85 Aligned_cols=121 Identities=13% Similarity=0.253 Sum_probs=67.6
Q ss_pred CCCCCCCCCCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEeccc---CHHHHH-HHHHhcC----
Q 027043 13 NGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS---KIIDCL-EFIRSKN---- 84 (229)
Q Consensus 13 ~~~~~~~~~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~---~i~~~i-~~i~~~~---- 84 (229)
+..||+|. +.+++|||||.+|+..++... ..+...+++|. .+.+.+ +|+++..
T Consensus 11 ~~~~~~~~-~~L~iDIGGT~ir~al~~~~g------------------~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~ 71 (638)
T PRK14101 11 EASQHADG-PRLLADVGGTNARFALETGPG------------------EITQIRVYPGADYPTLTDAIRKYLKDVKIGRV 71 (638)
T ss_pred hhccCCCC-CEEEEEcCchhheeeeecCCC------------------cccceeEEecCCCCCHHHHHHHHHHhcCCCCc
Confidence 34675555 499999999999999975211 11233445554 344444 4544321
Q ss_pred --cee------cCC-----ch-hhc-hHHHHHHhCCc-cceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCC
Q 027043 85 --LHL------AGG-----GA-YKF-ADLIKEKLGVV-LDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQND 148 (229)
Q Consensus 85 --i~~------TGG-----GA-~k~-~~~~~~~lg~~-~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~ 148 (229)
+.+ -+. .. ..+ .+.+++.++++ +.-.+.+.|...|...|- ++|.+++-.... .+
T Consensus 72 ~~igig~pGpVd~~~~~~~nl~w~~~~~~l~~~~g~~~v~l~ND~~aaA~ge~~l~---~~e~~~~G~g~~-------~~ 141 (638)
T PRK14101 72 NHAAIAIANPVDGDQVRMTNHDWSFSIEATRRALGFDTLLVVNDFTALAMALPGLT---DAQRVQVGGGTR-------RQ 141 (638)
T ss_pred ceEEEEEecCccCCeeeecCCCcEecHHHHHHHcCCCeEEEEchHHHHHcCCccCC---HHHeEEeCCCCC-------CC
Confidence 111 010 00 112 24566778885 678899999888864442 223333332221 22
Q ss_pred CccEEEEecCCceE
Q 027043 149 LYPYLLVNIGSGVS 162 (229)
Q Consensus 149 ~yPyLlVNIGSGvS 162 (229)
-.+++++..|||+-
T Consensus 142 ~~~~~~lGtGTGlG 155 (638)
T PRK14101 142 NSVIGLLGPGTGLG 155 (638)
T ss_pred CCcEEEEECCccce
Confidence 35788888887766
No 13
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.88 E-value=0.23 Score=45.18 Aligned_cols=138 Identities=22% Similarity=0.245 Sum_probs=81.6
Q ss_pred eEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecc--cC----HHHHHHHH-HhcC--------cee
Q 027043 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET--SK----IIDCLEFI-RSKN--------LHL 87 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t--~~----i~~~i~~i-~~~~--------i~~ 87 (229)
.+|||||.|.+|.|-++..+. ..-.+.+...++ .+ .+++++-+ ++.. +..
T Consensus 3 ~~GIDiGStttK~Vlid~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~i~~ 67 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEVDGD---------------KEECLAKRNDRIRQRDPFKLAEDAYDDLLEEAGLAAADVAYCAT 67 (262)
T ss_pred EEEEEcCcccEEEEEEecCCC---------------eeEEEEEEEecCCCCCHHHHHHHHHHHHHHHcCCChhheEEEEE
Confidence 579999999999999872110 000122222222 22 35555443 2222 466
Q ss_pred cCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCC-ceEEEEE
Q 027043 88 AGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGS-GVSMIKV 166 (229)
Q Consensus 88 TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGS-GvSi~kV 166 (229)
||-|... . +. -+ .+.|+.|..+|+.|+. |+.- -++.||- =.-++++
T Consensus 68 TGYGR~~-~--~a--~~----~vtEIt~ha~GA~~~~---p~~~---------------------tIiDIGGQD~K~I~~ 114 (262)
T TIGR02261 68 TGEGESL-A--FH--TG----HFYSMTTHARGAIYLN---PEAR---------------------AVLDIGALHGRAIRM 114 (262)
T ss_pred ECCchhh-h--hh--cC----CeeEEeHHHHHHHHHC---CCCC---------------------EEEEeCCCceEEEEE
Confidence 9998742 1 11 11 3679999999999984 2111 3444443 1223444
Q ss_pred eCC---CceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCC
Q 027043 167 DGD---GKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGN 209 (229)
Q Consensus 167 ~~~---~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd 209 (229)
+.+ .+|..=.=++-|-|.|+--..-..+. +.+|+-++|.+.+
T Consensus 115 ~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~i-~leel~~~a~~~~ 159 (262)
T TIGR02261 115 DERGKVEAYKMTSQCASGSGQFLENIARYLGI-AQDEIGSLSQQAD 159 (262)
T ss_pred cCCCcEeeEEecCcccccccHHHHHHHHHhCC-CHHHHHHHHhcCC
Confidence 322 24555556777888888877777775 7899999887764
No 14
>PRK13318 pantothenate kinase; Reviewed
Probab=95.69 E-value=0.19 Score=44.62 Aligned_cols=30 Identities=27% Similarity=0.572 Sum_probs=24.2
Q ss_pred cEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 151 PYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 151 PyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
|+++|.+||+|.+=.|+.++ ++.||..+=|
T Consensus 125 ~~ivid~GTA~t~d~v~~~g--~~~GG~I~PG 154 (258)
T PRK13318 125 PLIVVDFGTATTFDVVSAKG--EYLGGVIAPG 154 (258)
T ss_pred CEEEEEcCCceEEEEEcCCC--cEEEEEECcc
Confidence 89999999999999998866 4567765433
No 15
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.20 E-value=0.15 Score=45.07 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=26.8
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccc
Q 027043 150 YPYLLVNIGSGVSMIKVDGDGKFERISGTS 179 (229)
Q Consensus 150 yPyLlVNIGSGvSi~kV~~~~~~~RVgGss 179 (229)
.|-+++-.|||..++..+.+++..|+||-+
T Consensus 106 ~~giv~I~GTGS~~~~~~~~g~~~r~gG~G 135 (271)
T PF01869_consen 106 EDGIVVIAGTGSIAYGRDRDGRVIRFGGWG 135 (271)
T ss_dssp SSEEEEEESSSEEEEEEETTSEEEEEEESC
T ss_pred CcEEEEEcCCCceEEEEEcCCcEEEeCCCC
Confidence 579999999999999999779999999843
No 16
>PRK12408 glucokinase; Provisional
Probab=95.17 E-value=0.05 Score=50.22 Aligned_cols=117 Identities=16% Similarity=0.311 Sum_probs=63.1
Q ss_pred eEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccC---HHHHH-HHHHhc-Cc-----ee-----
Q 027043 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSK---IIDCL-EFIRSK-NL-----HL----- 87 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~---i~~~i-~~i~~~-~i-----~~----- 87 (229)
.+++|||||.+|+..++....... ....+...++++.. +++.+ +|+++. .+ .+
T Consensus 18 ~L~~DIGGT~i~~al~d~~g~~~~------------~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~igIg~pG~~~ 85 (336)
T PRK12408 18 FVAADVGGTHVRVALVCASPDAAK------------PVELLDYRTYRCADYPSLAAILADFLAECAPVRRGVIASAGYAL 85 (336)
T ss_pred EEEEEcChhhhheeEEeccCCccc------------cccccceeEecCCCccCHHHHHHHHHhcCCCcCEEEEEecCCce
Confidence 599999999999999863221000 00012334455433 44444 455431 11 11
Q ss_pred -cCC------chhhchHHHHHHhCCc-cceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCC-ccEEEEecC
Q 027043 88 -AGG------GAYKFADLIKEKLGVV-LDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDL-YPYLLVNIG 158 (229)
Q Consensus 88 -TGG------GA~k~~~~~~~~lg~~-~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~-yPyLlVNIG 158 (229)
+|- .-..+.+.+++.++++ +.-.+.+.|...|..++-.. .+..-.+. .... .+.++|.+|
T Consensus 86 ~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~gE~~~~~~----~~~~~~g~-------~~~~~~~~~~i~~G 154 (336)
T PRK12408 86 DDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYAAPYMEGN----QVLQLSGP-------AQAAAGPALVLGPG 154 (336)
T ss_pred ECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcccccCCHh----HeeeecCC-------CCCCCCcEEEEECC
Confidence 111 0113456777788885 88899999988887655210 00000000 0122 468999999
Q ss_pred CceE
Q 027043 159 SGVS 162 (229)
Q Consensus 159 SGvS 162 (229)
||+-
T Consensus 155 TGiG 158 (336)
T PRK12408 155 TGLG 158 (336)
T ss_pred Ccce
Confidence 9765
No 17
>PRK00292 glk glucokinase; Provisional
Probab=95.11 E-value=0.085 Score=47.76 Aligned_cols=113 Identities=18% Similarity=0.283 Sum_probs=62.8
Q ss_pred eEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCc-eEEeEeccc---CHHHHH-HHHHh-cC-----c--eecC
Q 027043 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGR-LHFAKFETS---KIIDCL-EFIRS-KN-----L--HLAG 89 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~-l~F~~f~t~---~i~~~i-~~i~~-~~-----i--~~TG 89 (229)
.+|+|||||.+|++.++... +. +...++++. .+.+.+ +++++ .. + .+.|
T Consensus 4 ~lgiDIGgT~i~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gigIg~pG 65 (316)
T PRK00292 4 ALVGDIGGTNARFALCDWAN------------------GEIEQIKTYATADYPSLEDAIRAYLADEHGVQVRSACFAIAG 65 (316)
T ss_pred EEEEEcCccceEEEEEecCC------------------CceeeeEEEecCCCCCHHHHHHHHHHhccCCCCceEEEEEeC
Confidence 58999999999999986211 11 334445543 355555 56653 21 1 1111
Q ss_pred ----Cch------h-hchHHHHHHhCCc-cceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEec
Q 027043 90 ----GGA------Y-KFADLIKEKLGVV-LDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNI 157 (229)
Q Consensus 90 ----GGA------~-k~~~~~~~~lg~~-~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNI 157 (229)
+.. . ...+.+++.++++ +.-.+.+.|...|-.++.+ .+.-.+-... .....++++|++
T Consensus 66 ~vd~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~~~---~~~~~~g~~~-------~~~~~~~~~v~~ 135 (316)
T PRK00292 66 PVDGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGE---EDLVQIGGGE-------PVPGAPIAVIGP 135 (316)
T ss_pred cccCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccCCH---hheeEeCCCC-------CCCCCcEEEEEc
Confidence 100 1 1235677778885 8888888888877654321 0000011110 012357899999
Q ss_pred CCceEE
Q 027043 158 GSGVSM 163 (229)
Q Consensus 158 GSGvSi 163 (229)
|||+-.
T Consensus 136 GTGiG~ 141 (316)
T PRK00292 136 GTGLGV 141 (316)
T ss_pred CCcceE
Confidence 998753
No 18
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=94.90 E-value=0.68 Score=44.39 Aligned_cols=147 Identities=19% Similarity=0.307 Sum_probs=87.5
Q ss_pred CCCCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEe-cc-------cCHHHHHHHHHhc-----Cc
Q 027043 19 SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKF-ET-------SKIIDCLEFIRSK-----NL 85 (229)
Q Consensus 19 ~~~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f-~t-------~~i~~~i~~i~~~-----~i 85 (229)
..+..+|||.|.|.||.|-.+... .+..-.+ .+ +-+.+.++.+..+ .+
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~-------------------~I~~~~~~~t~g~p~~~~~l~~~le~l~~~~~~I~~~ 193 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGK-------------------EILYGFYVSTKGRPIAEKALKEALEELGEKLEEILGL 193 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCC-------------------eEEEEEEEcCCCChhHHHHHHHHHHHcccChheeeee
Confidence 457789999999999999987332 1111111 11 1223333333322 34
Q ss_pred eecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCC-ceEEE
Q 027043 86 HLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGS-GVSMI 164 (229)
Q Consensus 86 ~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGS-GvSi~ 164 (229)
.+||-|-+.....| +.. ..+.|..|..+|+.||..... -++-||- =+=.+
T Consensus 194 ~~TGYGR~~v~~~~----~aD-~~~~Ei~ah~kgA~~f~p~~d------------------------tIiDIGGQD~K~i 244 (396)
T COG1924 194 GVTGYGRNLVGAAL----GAD-KVVVEISAHAKGARYFAPDVD------------------------TVIDIGGQDSKVI 244 (396)
T ss_pred eeecccHHHhhhhh----cCC-cceeeeehhHHHHHHhCCCCc------------------------EEEEecCcceeEE
Confidence 56999866443222 222 237899999999999963221 3344442 12234
Q ss_pred EEeC--CCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCce
Q 027043 165 KVDG--DGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDM 215 (229)
Q Consensus 165 kV~~--~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDm 215 (229)
++++ +..|..=+=++-|-|-|+=-..--.| -+.+|+-++|.++++. |+|
T Consensus 245 ~i~dG~v~df~mN~~CAAGtGrFLE~~A~~Lg-v~v~E~~~~A~~~~~~-v~i 295 (396)
T COG1924 245 KLEDGKVDDFTMNDKCAAGTGRFLEVIARRLG-VDVEELGKLALKATPP-VKI 295 (396)
T ss_pred EEeCCeeeeeEeccccccccchHHHHHHHHhC-CCHHHHHHHHhcCCCC-ccc
Confidence 4443 33566666677777777655544444 6899999999999986 544
No 19
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.85 E-value=0.67 Score=41.61 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=40.5
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeC
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDG 168 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~ 168 (229)
.+.+.|++.+++|+.-.++..|..-|=.++-.. .....++++.+|+|+--=-|-+
T Consensus 97 ~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~--------------------~~~~~~~~i~~gtGIG~giv~~ 151 (314)
T COG1940 97 DLAEELEARLGLPVFVENDANAAALAEAWFGAG--------------------RGIDDVVYITLGTGIGGGIIVN 151 (314)
T ss_pred cHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCC--------------------CCCCCEEEEEEccceeEEEEEC
Confidence 378899999999999999999998886665321 1223478888888877555444
No 20
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.83 E-value=1.8 Score=38.79 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=37.9
Q ss_pred chHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeC
Q 027043 95 FADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDG 168 (229)
Q Consensus 95 ~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~ 168 (229)
..+.|++.+++++.-.+...|...|-.+.-. . .....+++|.+|+|+..=.|.+
T Consensus 89 l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~-~-------------------~~~~~~~~v~igtGiG~giv~~ 142 (318)
T TIGR00744 89 LKEKVEARVGLPVVVENDANAAALGEYKKGA-G-------------------KGARDVICITLGTGLGGGIIIN 142 (318)
T ss_pred HHHHHHHHHCCCEEEechHHHHHHHHHHhcc-c-------------------CCCCcEEEEEeCCccEEEEEEC
Confidence 5567888889999999999998877654421 0 1234578888888877655544
No 21
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=94.80 E-value=0.24 Score=45.82 Aligned_cols=117 Identities=18% Similarity=0.343 Sum_probs=71.6
Q ss_pred EEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHH---H-HHHHhc----------Ccee--
Q 027043 24 LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDC---L-EFIRSK----------NLHL-- 87 (229)
Q Consensus 24 igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~---i-~~i~~~----------~i~~-- 87 (229)
++-|||||.+-+..+.+.... ---++..+|++++.+.+ + +|+++. .|.+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~---------------~~~~~~~~~~~~~~~s~~~~l~~~l~~~~~~~~~p~~~~iavAG 65 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGP---------------LQLIDIRRYPSADFPSFEDALADYLAELDAGGPEPDSACIAVAG 65 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG----------------EEEEEEEEEGCCCCHHHHHHHHHHHHTCHHHTCEEEEEEEESS
T ss_pred CeEEeCcccEEEEEEEcCCCC---------------ccccccEEEecCCcCCHHHHHHHHHHhcccCCCccceEEEEEec
Confidence 467999999999998844320 01245566777766444 4 455531 1222
Q ss_pred --cCCch-------hhchHHHHHHhCCc-cceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeec---CCCCCccEEE
Q 027043 88 --AGGGA-------YKFADLIKEKLGVV-LDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQI---DQNDLYPYLL 154 (229)
Q Consensus 88 --TGGGA-------~k~~~~~~~~lg~~-~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~---~~~~~yPyLl 154 (229)
+++-. ..-.+.+++.++++ +.-++.|+++..|+..|-.+ +++++ .+.+--|.++
T Consensus 66 PV~~~~~~lTN~~W~i~~~~l~~~lg~~~v~liNDfeA~a~gl~~L~~~-------------~l~~l~~g~~~~~~~~~V 132 (316)
T PF02685_consen 66 PVRDGKVRLTNLPWTIDADELAQRLGIPRVRLINDFEAQAYGLPALDPE-------------DLVTLQPGEPDPGGPRAV 132 (316)
T ss_dssp -EETTCEE-SSSCCEEEHHHCHCCCT-TCEEEEEHHHHHHHHHHHHHHC-------------CECCHCCEESSTTS-EEE
T ss_pred CccCCEEEecCCCccccHHHHHHHhCCceEEEEcccchheeccCCCCHH-------------HeeeccCCCCCCCCcEEE
Confidence 33322 12344566677764 77899999999999987531 11111 1346789999
Q ss_pred EecCCc--eEEEEEeC
Q 027043 155 VNIGSG--VSMIKVDG 168 (229)
Q Consensus 155 VNIGSG--vSi~kV~~ 168 (229)
+..||| ++.+.-++
T Consensus 133 ig~GTGLG~a~l~~~~ 148 (316)
T PF02685_consen 133 IGPGTGLGVALLVPDG 148 (316)
T ss_dssp EEESSSEEEEEEEEET
T ss_pred EEcCCCcEEEEEEecC
Confidence 999995 77766655
No 22
>PRK13321 pantothenate kinase; Reviewed
Probab=94.08 E-value=1.2 Score=39.60 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=24.7
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 150 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 150 yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
.|+++|++||-+.+=.|++++ +++||.-+=|
T Consensus 124 ~~~lvid~GTA~T~d~v~~~g--~~~GG~I~PG 154 (256)
T PRK13321 124 RNLIVVDFGTATTFDCVSGKG--EYLGGAICPG 154 (256)
T ss_pred CCEEEEECCCceEEEEEcCCC--cEEEEEECcc
Confidence 389999999999999998865 4667765544
No 23
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=93.89 E-value=0.19 Score=37.21 Aligned_cols=18 Identities=33% Similarity=0.218 Sum_probs=16.2
Q ss_pred eEEEEeCCceeEEEEEee
Q 027043 23 HLALDIGGSLIKVVYFLR 40 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~ 40 (229)
.+|||+|||-+|++.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred EEEEccCCCeEEEEEECC
Confidence 589999999999999874
No 24
>PRK09557 fructokinase; Reviewed
Probab=92.36 E-value=3.7 Score=36.73 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=35.2
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEE
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKV 166 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV 166 (229)
...+.+++.+++|+.-.+...|...|-.+.-. . .....++.+++|+|+-.=-|
T Consensus 87 ~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~-~-------------------~~~~~~~~l~igtGiG~giv 139 (301)
T PRK09557 87 PLDKDLSARLNREVRLANDANCLAVSEAVDGA-A-------------------AGKQTVFAVIIGTGCGAGVA 139 (301)
T ss_pred CHHHHHHHHHCCCEEEccchhHHHHHHHHhcc-c-------------------CCCCcEEEEEEccceEEEEE
Confidence 34566888889999989999988877654321 0 12234778888887764443
No 25
>PRK13320 pantothenate kinase; Reviewed
Probab=92.26 E-value=3.6 Score=36.65 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=25.8
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 149 ~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
..|+++|++||.+.+=.|+.++ ++.||..+=|
T Consensus 113 ~~~~lVID~GTA~Tid~v~~~g--~~~GG~I~PG 144 (244)
T PRK13320 113 GKNVLAIDAGTAITYDVLDSEG--VYLGGLISPG 144 (244)
T ss_pred CCCEEEEEcCCceEEEEEcCCC--cEEEEEEchh
Confidence 4689999999999999998866 4667766554
No 26
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=92.14 E-value=0.21 Score=42.38 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=16.5
Q ss_pred eEEEEeCCceeEEEEEee
Q 027043 23 HLALDIGGSLIKVVYFLR 40 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~ 40 (229)
+||||+|||.|..|.+++
T Consensus 1 RigIDvGGT~TD~v~~d~ 18 (176)
T PF05378_consen 1 RIGIDVGGTFTDAVLLDE 18 (176)
T ss_pred CeeEecCCCcEEEEEEeC
Confidence 589999999999999884
No 27
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=91.79 E-value=0.67 Score=42.15 Aligned_cols=47 Identities=28% Similarity=0.479 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHh-------cCceecCCchh--hchHHHHHHhCCccceechhhhhh
Q 027043 71 SKIIDCLEFIRS-------KNLHLAGGGAY--KFADLIKEKLGVVLDKEDEMDCLV 117 (229)
Q Consensus 71 ~~i~~~i~~i~~-------~~i~~TGGGA~--k~~~~~~~~lg~~~~k~dEm~~li 117 (229)
++|.++++|... .+|.+|||||. -+.+.|.+.+++++...+=+..+.
T Consensus 265 ~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~ 320 (348)
T TIGR01175 265 DEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMA 320 (348)
T ss_pred HHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcc
Confidence 345566666542 25788999995 388999999999998888776544
No 28
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=91.44 E-value=5.2 Score=32.53 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=66.2
Q ss_pred EEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecc-cCHHHHHHHHHh--------c---Cc--ee---
Q 027043 25 ALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET-SKIIDCLEFIRS--------K---NL--HL--- 87 (229)
Q Consensus 25 giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t-~~i~~~i~~i~~--------~---~i--~~--- 87 (229)
|||||+|-++++.++-. +..+.-.++++ ...+++++.+.+ . .| .+
T Consensus 1 gidig~~~i~~~l~d~~------------------g~ii~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD------------------GEIIYSESIPTPTSPEELLDALAELIERLLADYGRSGIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEETT------------------SCEEEEEEEEHHSSHHHHHHHHHHHHHHHHHHHTCEEEEEEESSE
T ss_pred CEEECCCEEEEEEECCC------------------CCEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcccccEEEecccc
Confidence 79999999999998722 22344555665 455555443331 1 11 11
Q ss_pred ----c---------CCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEE
Q 027043 88 ----A---------GGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLL 154 (229)
Q Consensus 88 ----T---------GGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLl 154 (229)
+ +=....+.+.|++.+++|+.-.+...|...|-.++-.. ....-+++
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~--------------------~~~~~~~~ 122 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFGVPVIIENDANAAALAEYWFGAA--------------------KDCDNFLY 122 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTT--------------------TTTSSEEE
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccceEEEEecCCCcceeehhhcCcc--------------------CCcceEEE
Confidence 1 11113466788899999999999999998886654321 12234788
Q ss_pred EecCCceEEEEEeC
Q 027043 155 VNIGSGVSMIKVDG 168 (229)
Q Consensus 155 VNIGSGvSi~kV~~ 168 (229)
+.+|+|+..=-+.+
T Consensus 123 l~ig~GiG~~ii~~ 136 (179)
T PF00480_consen 123 LYIGTGIGAGIIIN 136 (179)
T ss_dssp EEESSSEEEEEEET
T ss_pred EEeecCCCcceecc
Confidence 88898875544433
No 29
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=90.95 E-value=1.8 Score=42.52 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=26.7
Q ss_pred cEEEEecCCceEEEEEeCCCceEEeeccccCch
Q 027043 151 PYLLVNIGSGVSMIKVDGDGKFERISGTSVGGG 183 (229)
Q Consensus 151 PyLlVNIGSGvSi~kV~~~~~~~RVgGssiGGG 183 (229)
.-++|.||.||+=+.|-.+++..+.+--.+||-
T Consensus 147 gVa~IDIGgGTT~iaVf~~G~l~~T~~l~vGG~ 179 (475)
T PRK10719 147 RVLNIDIGGGTANYALFDAGKVIDTACLNVGGR 179 (475)
T ss_pred ceEEEEeCCCceEEEEEECCEEEEEEEEecccc
Confidence 469999999999888877777777777777774
No 30
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=90.29 E-value=7.9 Score=34.57 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=36.5
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeC
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDG 168 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~ 168 (229)
.+.+.|++.+++|+.-.+...|...|=.+.-. . .....++.+++|+|+-.=-|-+
T Consensus 87 ~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~-~-------------------~~~~~~~~l~~gtGiG~giv~~ 141 (303)
T PRK13310 87 PLRADLSARLGRDVRLDNDANCFALSEAWDDE-F-------------------TQYPLVMGLILGTGVGGGLVFN 141 (303)
T ss_pred cHHHHHHHHHCCCeEEeccHhHHHHHHhhhcc-c-------------------cCCCcEEEEEecCceEEEEEEC
Confidence 45567888889998888888887766433211 0 1223588899999887554444
No 31
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=89.71 E-value=3.3 Score=36.85 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=24.8
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 150 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 150 yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
.|.++|.+||-+.+=.|+.++ +++||..+=|
T Consensus 116 ~~~lViD~GTA~Tid~v~~~g--~~~GG~I~PG 146 (243)
T TIGR00671 116 FNVVVVDAGTALTIDLVDQEG--KFLGGAIAPG 146 (243)
T ss_pred CCEEEEEcCCceEEEEEcCCC--eEEEEEECcc
Confidence 489999999999999998765 4667765544
No 32
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=88.90 E-value=11 Score=32.99 Aligned_cols=56 Identities=9% Similarity=0.109 Sum_probs=36.9
Q ss_pred hhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeC
Q 027043 93 YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDG 168 (229)
Q Consensus 93 ~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~ 168 (229)
+.+.+.|++.+++|+.-.++..|...|=.+.-.. .....++.+.+|+|+-.=.|-+
T Consensus 86 ~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~~--------------------~~~~~~v~i~lgtGiG~giv~~ 141 (256)
T PRK13311 86 QPLQADLSRLIQREVRIDNDANCFALSEAWDPEF--------------------RTYPTVLGLILGTGVGGGLIVN 141 (256)
T ss_pred CChHHHHHHHHCCCEEEEchhhHHHHHHHHhcCC--------------------CCCCcEEEEEECcCeEEEEEEC
Confidence 3455677788889988889888887665443210 1223478888888877554433
No 33
>PRK13331 pantothenate kinase; Reviewed
Probab=87.94 E-value=11 Score=34.03 Aligned_cols=32 Identities=25% Similarity=0.581 Sum_probs=25.0
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 149 ~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
..|+++|.+||-|.+=.|+.+++ ++||..+=|
T Consensus 112 ~~~~iVID~GTA~T~D~V~~~g~--~~GG~I~PG 143 (251)
T PRK13331 112 GFPCLVIDAGTALTFTGVDSDRT--LVGGAILPG 143 (251)
T ss_pred CCCEEEEECCCceEEEEEcCCCc--EEEEEECcc
Confidence 35899999999999999988654 567755443
No 34
>PRK09698 D-allose kinase; Provisional
Probab=87.65 E-value=12 Score=33.28 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=32.7
Q ss_pred chHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEE
Q 027043 95 FADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKV 166 (229)
Q Consensus 95 ~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV 166 (229)
..+.|++.+++++.-.+...|...|-.+... .....++.|.+|+|+-.=-+
T Consensus 96 l~~~l~~~~~~pv~v~NDa~aaa~~E~~~~~---------------------~~~~~~~~v~lgtGIG~giv 146 (302)
T PRK09698 96 LADKLENTLNCPVFFSRDVNLQLLWDVKENN---------------------LTQQLVLGAYLGTGMGFAVW 146 (302)
T ss_pred HHHHHHHHhCCCEEEcchHhHHHHHHHHhcC---------------------CCCceEEEEEecCceEEEEE
Confidence 4466788889999999988886654322110 01124788999998843333
No 35
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=87.49 E-value=0.52 Score=43.97 Aligned_cols=44 Identities=32% Similarity=0.556 Sum_probs=34.5
Q ss_pred cCceecCCch--hhchHHHHHHhCCccceech-hhhhhhhHHHHHhh
Q 027043 83 KNLHLAGGGA--YKFADLIKEKLGVVLDKEDE-MDCLVTGANFLLKA 126 (229)
Q Consensus 83 ~~i~~TGGGA--~k~~~~~~~~lg~~~~k~dE-m~~li~G~~fLl~~ 126 (229)
+.|.+||||| .-+.+.|++++++++...|+ ..|.++|+.-++++
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~~ 321 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLEN 321 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC-
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHhC
Confidence 4689999999 47788999999999987766 78999999888764
No 36
>PRK13326 pantothenate kinase; Reviewed
Probab=83.72 E-value=33 Score=30.96 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=25.6
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 150 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 150 yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
.|+++|.+||-+.+=.|+.+++| .||.-+=|
T Consensus 126 ~~~iVID~GTA~T~D~V~~~g~~--lGG~I~PG 156 (262)
T PRK13326 126 NDALVVDLGTACTIFAVSRQDGI--LGGLINGG 156 (262)
T ss_pred CCEEEEECCCceEEEEEcCCCcE--EEEEECcc
Confidence 47999999999999999887754 78876554
No 37
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=83.57 E-value=31 Score=30.53 Aligned_cols=52 Identities=10% Similarity=0.113 Sum_probs=34.6
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEE
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKV 166 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV 166 (229)
.+.+.|++.+++++.-.++..|...|=.+.- . ...-+++++++|+||--=-|
T Consensus 87 ~l~~~l~~~~~~pv~v~NDa~a~a~aE~~~g---~------------------~~~~~~~~l~ig~GiG~giv 138 (291)
T PRK05082 87 PLVQTLEQLTDLPTIALNDAQAAAWAEYQAL---P------------------DDIRNMVFITVSTGVGGGIV 138 (291)
T ss_pred ChHHHHHHHhCCCEEEECcHHHHHHHHHHhc---C------------------CCCCCEEEEEECCCcceEEE
Confidence 3556678888999999999998777643321 0 12235788888887754333
No 38
>PRK13324 pantothenate kinase; Reviewed
Probab=80.05 E-value=31 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=25.9
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 149 ~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
..|.++|.+||-|.+=.|+.++ +++||..+=|
T Consensus 123 ~~~~iViD~GTA~T~d~v~~~g--~~~GG~I~PG 154 (258)
T PRK13324 123 NKDLLIIDLGTATTFDLVTKDK--KYLSGSIMPG 154 (258)
T ss_pred CCCEEEEEcCCceEEEEEcCCC--eEEEEEECcc
Confidence 3589999999999999998865 5668766554
No 39
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=79.00 E-value=17 Score=29.61 Aligned_cols=92 Identities=21% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHHHHHHhcCc--eecC-----Cch
Q 027043 20 QISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNL--HLAG-----GGA 92 (229)
Q Consensus 20 ~~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~~~i--~~TG-----GGA 92 (229)
.+..+|||.|-.-+=++..++... . ...-..+..... ...+++..+++++..+ .+-| .|.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~~-~-----------a~pl~~i~~~~~-~~~~~~l~~~i~~~~i~~iVvGlP~~~~G~ 69 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLGG-T-----------AQPLETIKRNNG-TPDWDRLEKLIKEWQPDGLVVGLPLNMDGT 69 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCCC-E-----------EcCEEEEEcCCC-chHHHHHHHHHHHhCCCEEEEeccCCCCCC
Confidence 456899999999999998553211 0 001112221111 1235666677776543 2233 332
Q ss_pred --------hhchHHHHHHhCCccceechhhhhhhhHHHHH
Q 027043 93 --------YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 124 (229)
Q Consensus 93 --------~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl 124 (229)
.+|.+.+++.+++++.-.||=-+....-..|.
T Consensus 70 ~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l~ 109 (138)
T PRK00109 70 EGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERALA 109 (138)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHHH
Confidence 38888998888999999999988888877774
No 40
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.26 E-value=5.6 Score=40.77 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=18.5
Q ss_pred CeEEEEeCCceeEEEEEeecC
Q 027043 22 SHLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 22 ~~igiDIGGSL~Kivy~~~~~ 42 (229)
..||||+|||.|..|+++..+
T Consensus 3 ~~iGID~GGTfTDaV~~~~~~ 23 (674)
T COG0145 3 LRIGIDVGGTFTDAVLLDEDG 23 (674)
T ss_pred eEEEEEcCCCcEeEEEEeCCC
Confidence 479999999999999998654
No 41
>PRK13328 pantothenate kinase; Reviewed
Probab=70.38 E-value=43 Score=30.02 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=27.1
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccCchhH
Q 027043 150 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTF 185 (229)
Q Consensus 150 yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGGGT~ 185 (229)
.|+++|.+||-+.|=.|+.++ +++||..+=|=.+
T Consensus 118 ~~~lViD~GTA~TiD~v~~~g--~~lGG~I~PG~~l 151 (255)
T PRK13328 118 EHLLIATFGTATTLDALRADG--RFAGGLILPGLAL 151 (255)
T ss_pred CCEEEEEcCCceEEEEEcCCC--cEeeEEecCCHHH
Confidence 479999999999999998865 5678876665443
No 42
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=68.81 E-value=5.3 Score=36.08 Aligned_cols=44 Identities=25% Similarity=0.549 Sum_probs=37.0
Q ss_pred CceecCCch--hhchHHHHHHhCCccceec-hhhhhhhhHHHHHhhC
Q 027043 84 NLHLAGGGA--YKFADLIKEKLGVVLDKED-EMDCLVTGANFLLKAV 127 (229)
Q Consensus 84 ~i~~TGGGA--~k~~~~~~~~lg~~~~k~d-Em~~li~G~~fLl~~~ 127 (229)
.|.+|||+| -.+.+.+++.+++++...+ =+.|+..|+.+++.+.
T Consensus 283 ~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred CEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 488999999 5788999999998877664 5999999999998654
No 43
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=68.57 E-value=6.1 Score=36.09 Aligned_cols=44 Identities=25% Similarity=0.527 Sum_probs=36.9
Q ss_pred CceecCCchh--hchHHHHHHhCCcccee-chhhhhhhhHHHHHhhC
Q 027043 84 NLHLAGGGAY--KFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKAV 127 (229)
Q Consensus 84 ~i~~TGGGA~--k~~~~~~~~lg~~~~k~-dEm~~li~G~~fLl~~~ 127 (229)
.|.+|||+|. .+.+.+++.+++++... +=++|+..|+.+.+.+.
T Consensus 278 ~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 278 GIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 4778999994 78899999999987655 48999999999998753
No 44
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=67.09 E-value=7.1 Score=35.47 Aligned_cols=56 Identities=14% Similarity=0.290 Sum_probs=33.4
Q ss_pred HHHHHhCC-ccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEE
Q 027043 98 LIKEKLGV-VLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSM 163 (229)
Q Consensus 98 ~~~~~lg~-~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi 163 (229)
.+++.+++ ++.-.+.++|...|...|. ++..+++-.... .+-.+++++..|+|..+
T Consensus 84 ~l~~~~g~~~V~l~ND~naaa~ge~~l~---~~~~~~~g~~~~-------~~~~~~v~lGtGtG~G~ 140 (316)
T TIGR00749 84 ELKQNLGFSHLEIINDFTAVSYAIPGLK---KEDLIQFGGAEP-------VEGKPIAILGAGTGLGV 140 (316)
T ss_pred HHHHhcCCCeEEEEecHHHHHcCCCCCC---HHHeEEeCCCCC-------CCCCcEEEEecCCCcee
Confidence 55667887 5888899999888843321 111122222111 23367899988887765
No 45
>PRK09604 UGMP family protein; Validated
Probab=67.05 E-value=27 Score=32.37 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=62.8
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEec-CCceEEEEEeCCCce
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNI-GSGVSMIKVDGDGKF 172 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNI-GSGvSi~kV~~~~~~ 172 (229)
-+..-+...++++++-++-++|......+.. ...+|++++-| |--+.++.+.+.+++
T Consensus 93 ~~Ak~La~~~~ipl~~v~h~~~ha~~a~~~s----------------------~~~~~~lvl~vsGG~s~~~~~~~~~~~ 150 (332)
T PRK09604 93 SFAKALALALNKPLIGVNHLEGHLLAPFLEE----------------------EPEFPFLALLVSGGHTQLVLVKGIGDY 150 (332)
T ss_pred HHHHHHHHHhCCCEEeecCHHHHHHhhhhcc----------------------CCCCCEEEEEecCCccEEEEEcCCCcE
Confidence 3455566667888888888888876544421 11346654333 422444666677899
Q ss_pred EEeeccc-cCchhHHhhhhhhcCCCCHH--HHHHHhhCCCCCcCc
Q 027043 173 ERISGTS-VGGGTFWGLGRLLTNCKSFD--ELLELSHQGNNRVID 214 (229)
Q Consensus 173 ~RVgGss-iGGGT~~GL~~LLtg~~~fd--eil~lA~~Gd~~~vD 214 (229)
+.++.|. ..=|-++--+....|-.... .++.||..|+...++
T Consensus 151 ~~l~~t~d~slG~~yd~~t~~LG~~~~~g~kvmgLA~~g~~~~~~ 195 (332)
T PRK09604 151 ELLGETLDDAAGEAFDKVAKLLGLGYPGGPAIDKLAKQGDPDAFK 195 (332)
T ss_pred EEccccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHHhCCCCeEe
Confidence 9998753 34566666666666654333 499999999865444
No 46
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=66.09 E-value=4.7 Score=36.99 Aligned_cols=45 Identities=29% Similarity=0.574 Sum_probs=31.8
Q ss_pred CHHHHHHHHHh-------cCceecCCchh--hchHHHHHHhCCccceechhhhh
Q 027043 72 KIIDCLEFIRS-------KNLHLAGGGAY--KFADLIKEKLGVVLDKEDEMDCL 116 (229)
Q Consensus 72 ~i~~~i~~i~~-------~~i~~TGGGA~--k~~~~~~~~lg~~~~k~dEm~~l 116 (229)
+|.++++|... .+|.+|||||. -..+.|.+.+++++...+.+.-+
T Consensus 258 EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~ 311 (340)
T PF11104_consen 258 EIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNI 311 (340)
T ss_dssp HHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGS
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhC
Confidence 44555665443 24788999994 66888999999999999887654
No 47
>PTZ00288 glucokinase 1; Provisional
Probab=66.04 E-value=21 Score=34.38 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=68.0
Q ss_pred CCCCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEec-cc-CHHHHHHHHH-------hc-----C
Q 027043 19 SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFE-TS-KIIDCLEFIR-------SK-----N 84 (229)
Q Consensus 19 ~~~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~-t~-~i~~~i~~i~-------~~-----~ 84 (229)
...--+|+|||||.+.+.+|+..+.+. ..-....++++ +. ++.+.++++. +. .
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 90 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDD-------------SGVHIIYVRFNVTKTDIRELLEFFDEVLQKLKKNLSFIQR 90 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCC-------------CceeEEEEecccccccHHHHHHHHHHHHHHHHhcCccccC
Confidence 334458999999999999998532100 01223345566 33 4444444432 21 1
Q ss_pred -----ce----ecCCch----------hhchHHHHHHhCC-ccceechhhhhhhhHHHHHhhCC-CccEEeeCCCeeeee
Q 027043 85 -----LH----LAGGGA----------YKFADLIKEKLGV-VLDKEDEMDCLVTGANFLLKAVH-QEAFTYVDGQKEFVQ 143 (229)
Q Consensus 85 -----i~----~TGGGA----------~k~~~~~~~~lg~-~~~k~dEm~~li~G~~fLl~~~~-~e~f~~~~~~~~~~~ 143 (229)
|. ++|+.. ++..++=-..+++ ++.-++.|+|...|+..|-..-- ++.|.---...++.+
T Consensus 91 ~~~a~iAvAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~ 170 (405)
T PTZ00288 91 VAAGAISVPGPVTGGQLAGPFNNLKGIARLTDYPVELFPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDA 170 (405)
T ss_pred cCeEEEEEeCceeCCEeeccccccccccccCCCCchhcCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceee
Confidence 11 155544 1222222223665 47789999999999887532110 111210000001111
Q ss_pred cC---C----CCCccEEEEecCCce--EEE
Q 027043 144 ID---Q----NDLYPYLLVNIGSGV--SMI 164 (229)
Q Consensus 144 ~~---~----~~~yPyLlVNIGSGv--Si~ 164 (229)
+. + ...-|.+++.+|||+ +++
T Consensus 171 l~~~~~~g~~~~~~~~~Vlg~GTGLG~all 200 (405)
T PTZ00288 171 LSEGKPAGSVIGRGRCMVLAPGTGLGSSLI 200 (405)
T ss_pred ecCCCCCcccCCCCCEEEEEeccceeEEEE
Confidence 11 1 244678999999964 444
No 48
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=64.85 E-value=7.1 Score=35.85 Aligned_cols=43 Identities=21% Similarity=0.418 Sum_probs=36.7
Q ss_pred CceecCCchh--hchHHHHHHhCCcccee-chhhhhhhhHHHHHhh
Q 027043 84 NLHLAGGGAY--KFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKA 126 (229)
Q Consensus 84 ~i~~TGGGA~--k~~~~~~~~lg~~~~k~-dEm~~li~G~~fLl~~ 126 (229)
+|.+|||+|. -+.+.+++++++++... +=++|+..|+.-.+++
T Consensus 281 gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~~~ 326 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSLEV 326 (335)
T ss_pred CEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHHHC
Confidence 4788999994 78899999999988775 6789999999988864
No 49
>PLN02666 5-oxoprolinase
Probab=63.61 E-value=9.3 Score=41.97 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.9
Q ss_pred CCCCeEEEEeCCceeEEEEEee
Q 027043 19 SQISHLALDIGGSLIKVVYFLR 40 (229)
Q Consensus 19 ~~~~~igiDIGGSL~Kivy~~~ 40 (229)
+..-+||||+|||.|.+|.+.+
T Consensus 7 ~~~~rigIDvGGTFTD~v~~~~ 28 (1275)
T PLN02666 7 SRKFRFCIDRGGTFTDVYAEVP 28 (1275)
T ss_pred CCCEEEEEECCcCCEeEEEEec
Confidence 4567899999999999999773
No 50
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=60.55 E-value=9.4 Score=34.82 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=29.3
Q ss_pred ceecCCchhhchHHHHHHhCC-ccceech-hhhhhhhHHHH
Q 027043 85 LHLAGGGAYKFADLIKEKLGV-VLDKEDE-MDCLVTGANFL 123 (229)
Q Consensus 85 i~~TGGGA~k~~~~~~~~lg~-~~~k~dE-m~~li~G~~fL 123 (229)
|.+|||||.-+++.|++.++. .+..+++ .-|.++|...+
T Consensus 277 Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 277 IVLVGGGAFLFKKAVKAAFPKHRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred EEEeCCcHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHHh
Confidence 677999999999999888764 3445566 66888886554
No 51
>PRK03011 butyrate kinase; Provisional
Probab=59.63 E-value=18 Score=34.22 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=18.9
Q ss_pred ccEEEEecCCceEEEEEeCCCceEE
Q 027043 150 YPYLLVNIGSGVSMIKVDGDGKFER 174 (229)
Q Consensus 150 yPyLlVNIGSGvSi~kV~~~~~~~R 174 (229)
.-++++.+|+|+|+-.+.+ ++..+
T Consensus 176 ~n~I~~hLGtGig~gai~~-Gk~id 199 (358)
T PRK03011 176 LNLIVAHLGGGISVGAHRK-GRVID 199 (358)
T ss_pred CcEEEEEeCCCceeeEEEC-CEEEe
Confidence 3689999999999988877 44444
No 52
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=58.68 E-value=7.8 Score=38.21 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.9
Q ss_pred CCCeEEEEeCCceeEEEEEe
Q 027043 20 QISHLALDIGGSLIKVVYFL 39 (229)
Q Consensus 20 ~~~~igiDIGGSL~Kivy~~ 39 (229)
.+..+|||||.|+|++|+.+
T Consensus 2 ~i~SVGIDIGTSTTQlvfSr 21 (473)
T PF06277_consen 2 EILSVGIDIGTSTTQLVFSR 21 (473)
T ss_pred eeEEEEEeecCCceeEEEEE
Confidence 35679999999999999943
No 53
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=56.44 E-value=69 Score=29.18 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=59.6
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceE-EEEEeCCCce
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVS-MIKVDGDGKF 172 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvS-i~kV~~~~~~ 172 (229)
-+..-+...+++|++-++.++|...-..|... ...+|++++-+=-|.+ ++.+++.+++
T Consensus 90 ~~Ak~la~~~~~p~~~v~hl~~ha~~a~~~s~---------------------~~~~~~l~l~vsGG~t~l~~~~~~~~~ 148 (305)
T TIGR00329 90 TFARSLALSLDKPLIGVNHLLGHIYAPRLDTN---------------------ILQFPFVSLLVSGGHTQIIAVKGIGDY 148 (305)
T ss_pred HHHHHHHHHhCCCEeecccHHHHHHHhhhhcC---------------------CCCCCcEEEEEcCCceEEEEEeCCCcE
Confidence 45666667789999999999999876655421 1257787555533554 6677776699
Q ss_pred EEeeccc-cCchhHHhhhhhhcCCCCHHH--HHHHhhCCCCCcCc
Q 027043 173 ERISGTS-VGGGTFWGLGRLLTNCKSFDE--LLELSHQGNNRVID 214 (229)
Q Consensus 173 ~RVgGss-iGGGT~~GL~~LLtg~~~fde--il~lA~~Gd~~~vD 214 (229)
++++.|. ..-|=++--+..|.|..-..| +..+|..|+...++
T Consensus 149 ~~l~~t~d~S~GrlfD~va~lLGl~y~g~~~iE~lA~~~~~~~~~ 193 (305)
T TIGR00329 149 EVLGETLDDAVGEAFDKVARLLGLGYPGGPKIEELAKKGDKLPFY 193 (305)
T ss_pred EEeeeecCchhhHHHHHHHHHcCCCCCChHHHHHHHhhCCCcccc
Confidence 9998753 122222222222233222222 66778888764333
No 54
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=55.80 E-value=34 Score=33.48 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.5
Q ss_pred eEEEEeCCceeEEEEEe
Q 027043 23 HLALDIGGSLIKVVYFL 39 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~ 39 (229)
.+|||||+|.||.|-++
T Consensus 4 ~lGIDIGSTsTKaVVmd 20 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMD 20 (432)
T ss_pred EEEEEcCchhEEEEEEc
Confidence 57999999999999977
No 55
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=54.59 E-value=23 Score=30.50 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=16.3
Q ss_pred eEEEEeCCceeEEEEEee
Q 027043 23 HLALDIGGSLIKVVYFLR 40 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~ 40 (229)
.+|||||.|.+|++-|+.
T Consensus 2 ~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeC
Confidence 489999999999999983
No 56
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=53.71 E-value=1.2e+02 Score=27.55 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=24.4
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 149 ~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
.+|.|+|..||.+.|=.|+..+ .++||...=|
T Consensus 121 ~~~~vVVD~GTA~Tid~v~~~~--~~lGG~I~PG 152 (251)
T COG1521 121 GKAVVVVDFGTATTIDLVDEGG--RYLGGAILPG 152 (251)
T ss_pred CCcEEEEEcCCeEEEEEEcCCC--cEeeeEeccC
Confidence 4568999999999999998854 3567655444
No 57
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=53.32 E-value=13 Score=32.29 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=19.7
Q ss_pred CCCCCeEEEEeCCceeEEEEEeec
Q 027043 18 ESQISHLALDIGGSLIKVVYFLRS 41 (229)
Q Consensus 18 ~~~~~~igiDIGGSL~Kivy~~~~ 41 (229)
.+.-..+|||+|||..+++.++-.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~ 83 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELS 83 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEE
T ss_pred CCCceEEEEeecCcEEEEEEEEEc
Confidence 345568999999999999998743
No 58
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=53.29 E-value=16 Score=33.10 Aligned_cols=44 Identities=27% Similarity=0.591 Sum_probs=36.2
Q ss_pred CceecCCchh--hchHHHHHHhCCcccee-chhhhhhhhHHHHHhhC
Q 027043 84 NLHLAGGGAY--KFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKAV 127 (229)
Q Consensus 84 ~i~~TGGGA~--k~~~~~~~~lg~~~~k~-dEm~~li~G~~fLl~~~ 127 (229)
.|.+|||+|. -+.+.+++.+++++... +-++|+..|+.....+.
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhhH
Confidence 4788999994 67889999999887665 48999999999998653
No 59
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=51.93 E-value=67 Score=29.54 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=62.3
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccE--EEEecCCceEEEEEeCCCc
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPY--LLVNIGSGVSMIKVDGDGK 171 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPy--LlVNIGSGvSi~kV~~~~~ 171 (229)
-+..-|...+++|++-++-++|......+-.+ ...+|+ |+|+-|... ++.+.++++
T Consensus 91 ~~Ak~la~~~~~p~~~v~h~~aha~~a~~~s~---------------------~~~~~~lvL~vdgg~s~-~~~~~~~~~ 148 (314)
T TIGR03723 91 SFAKALALALNKPLIGVNHLEGHLLAPFLEDK---------------------PLEFPFLALLVSGGHTQ-LVLVKGVGD 148 (314)
T ss_pred HHHHHHHHHhCCCEEecccHHHHHHhhhhccC---------------------CCCCCEEEEEEeCCCcE-EEEEecCCe
Confidence 55666666789999999999998764333210 123566 456666533 455666789
Q ss_pred eEEeeccc-cCchhHHhhhhhhcCCCCHH--HHHHHhhCCCCCcCc
Q 027043 172 FERISGTS-VGGGTFWGLGRLLTNCKSFD--ELLELSHQGNNRVID 214 (229)
Q Consensus 172 ~~RVgGss-iGGGT~~GL~~LLtg~~~fd--eil~lA~~Gd~~~vD 214 (229)
+++++.|. ..=|-++--+..+.|-..++ .++.||..|+....+
T Consensus 149 ~~~l~~t~d~SlG~~yd~vt~~LG~~~~~g~kvmgLA~~g~~~~~~ 194 (314)
T TIGR03723 149 YELLGETLDDAAGEAFDKVARLLGLGYPGGPAIDKLAKEGDPKAFK 194 (314)
T ss_pred EEEeeccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHhhCCCCEeE
Confidence 99998753 23345555555455543333 489999999865444
No 60
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=50.17 E-value=20 Score=32.67 Aligned_cols=43 Identities=26% Similarity=0.516 Sum_probs=35.8
Q ss_pred CceecCCchh--hchHHHHHHhCCccceec-hhhhhhhhHHHHHhh
Q 027043 84 NLHLAGGGAY--KFADLIKEKLGVVLDKED-EMDCLVTGANFLLKA 126 (229)
Q Consensus 84 ~i~~TGGGA~--k~~~~~~~~lg~~~~k~d-Em~~li~G~~fLl~~ 126 (229)
.|.+|||+|. -+.+.+++.+++++...+ =+.|+..|+.-++.+
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 5788999993 788899999999887664 789999999887754
No 61
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=48.76 E-value=17 Score=33.72 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=29.6
Q ss_pred ceecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHh
Q 027043 85 LHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 125 (229)
Q Consensus 85 i~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~ 125 (229)
|.+|||||.-+++.|++.++--..-.|=.-|.++|...+-.
T Consensus 295 IiL~GGGA~ll~~~lk~~f~~~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 295 VIVTGGGANIFFDSLSHWYSDVEKADESQFANVRGYYKYGE 335 (344)
T ss_pred EEEECCcHHHHHHHHHHHcCCeEEcCChHHHHHHHHHHHHH
Confidence 67899999889999998887432223345578888776654
No 62
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=47.88 E-value=13 Score=35.18 Aligned_cols=44 Identities=32% Similarity=0.561 Sum_probs=34.1
Q ss_pred CceecCCch--hhchHHHHHHhCCcccee-chhhhhhhhHHHHHhhC
Q 027043 84 NLHLAGGGA--YKFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKAV 127 (229)
Q Consensus 84 ~i~~TGGGA--~k~~~~~~~~lg~~~~k~-dEm~~li~G~~fLl~~~ 127 (229)
.+.+||||| .-+.+++.++.++++.-. |=++|..+|.-..+.++
T Consensus 286 givltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 286 GIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred ceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 478899999 356778888899887654 45899999988877543
No 63
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=47.74 E-value=27 Score=29.81 Aligned_cols=30 Identities=27% Similarity=0.567 Sum_probs=24.9
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeecccc
Q 027043 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSV 180 (229)
Q Consensus 149 ~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssi 180 (229)
..|+++|.+||-+.+=.|+.++ ++.||.-+
T Consensus 119 ~~~~lViD~GTA~Tid~v~~~g--~~~GG~I~ 148 (206)
T PF03309_consen 119 GQPCLVIDAGTATTIDVVDADG--QHLGGAIL 148 (206)
T ss_dssp TSSEEEEEESSEEEEEEEETTS--EEEEEEEE
T ss_pred CCCEEEEEcCCeEEEEEEcCCC--eEEEEEEC
Confidence 4789999999999999999755 47777654
No 64
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=47.45 E-value=15 Score=35.58 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=16.9
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
.+|||||+|.+|++-|+...
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g 21 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENG 21 (505)
T ss_pred EEEEeccccceEEEEEcCCC
Confidence 48999999999999987543
No 65
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=45.70 E-value=19 Score=32.67 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=16.1
Q ss_pred CCCCeEEEEeCCceeEEEEEee
Q 027043 19 SQISHLALDIGGSLIKVVYFLR 40 (229)
Q Consensus 19 ~~~~~igiDIGGSL~Kivy~~~ 40 (229)
..-+-+.+|||||.|+|..+..
T Consensus 75 g~~~~i~vDmGGTTtDi~~i~~ 96 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALIKD 96 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEEET
T ss_pred CCCCEEEEeCCCCEEEEEEEEC
Confidence 4457799999999999999863
No 66
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=40.07 E-value=24 Score=34.69 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=17.1
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
.+|||+|+|.+|.+-|+...
T Consensus 2 ~lgID~GTts~Ka~l~d~~G 21 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTG 21 (541)
T ss_pred EEEEEecCcCEEEEEEcCCC
Confidence 47999999999999997543
No 67
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=38.36 E-value=44 Score=32.97 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCCCCCCCCeEEEEeCCceeEEEEEeec
Q 027043 14 GDESESQISHLALDIGGSLIKVVYFLRS 41 (229)
Q Consensus 14 ~~~~~~~~~~igiDIGGSL~Kivy~~~~ 41 (229)
+++ ++.-.-++||.|||.-|+|.+.-.
T Consensus 69 p~g-~e~g~~LaiD~GGTnlRvc~V~l~ 95 (466)
T COG5026 69 PTG-NESGSVLAIDLGGTNLRVCLVVLG 95 (466)
T ss_pred CCC-CCCCCEEEEecCCceEEEEEEEeC
Confidence 355 788899999999999999998755
No 68
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=38.27 E-value=87 Score=24.51 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=30.5
Q ss_pred EEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecc--cCHHHHHHHHHhc
Q 027043 24 LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET--SKIIDCLEFIRSK 83 (229)
Q Consensus 24 igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t--~~i~~~i~~i~~~ 83 (229)
+|||++-...=++++.+.. ..+...+|+. ..+.++++|++..
T Consensus 2 vGiDv~k~~~~v~v~~~~~------------------~~~~~~~~~~~~~~~~~l~~~l~~~ 45 (144)
T PF01548_consen 2 VGIDVSKDTHDVCVIDPNG------------------EKLRRFKFENDPAGLEKLLDWLASL 45 (144)
T ss_pred EEEEcccCeEEEEEEcCCC------------------cEEEEEEEeccccchhHHhhhhccc
Confidence 7999998888888876321 2445566666 6788888999865
No 69
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=37.93 E-value=34 Score=26.70 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=14.3
Q ss_pred EEEEeCCceeEEEEEee
Q 027043 24 LALDIGGSLIKVVYFLR 40 (229)
Q Consensus 24 igiDIGGSL~Kivy~~~ 40 (229)
++||||++.++++-++.
T Consensus 2 ~~iDiGs~~~~~~i~~~ 18 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAED 18 (120)
T ss_dssp EEEEE-SSSEEEEEEET
T ss_pred EEEEcCCCcEEEEEEEe
Confidence 68999999999999874
No 70
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=37.30 E-value=26 Score=33.77 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.0
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
.+|||||+|.+|.+-|+...
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g 22 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDG 22 (493)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 58999999999999887543
No 71
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=36.95 E-value=1.6e+02 Score=23.74 Aligned_cols=90 Identities=18% Similarity=0.092 Sum_probs=57.3
Q ss_pred CeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHHHHHHhcCcee-----------c-C
Q 027043 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHL-----------A-G 89 (229)
Q Consensus 22 ~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~~~i~~-----------T-G 89 (229)
..+|||.|-.-+=++..++... ....-..+.-.. ....+++..+.+++..+.. + +
T Consensus 2 riL~lD~G~kriGiAvsd~~~~------------~a~pl~~i~~~~-~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~ 68 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGI------------IASPLETIPRRN-REKDIEELKKLIEEYQIDGIVVGLPLNMDGSES 68 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTS------------SEEEEEEEEECC-CCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-
T ss_pred eEEEEEeCCCeEEEEEecCCCC------------eEeeeEEEECCC-CchHHHHHHHHHHHhCCCEEEEeCCcccCCCcc
Confidence 4689999999999999663221 001112233111 1457788888888765421 1 2
Q ss_pred Cch---hhchHHHHHHh-CCccceechhhhhhhhHHHHH
Q 027043 90 GGA---YKFADLIKEKL-GVVLDKEDEMDCLVTGANFLL 124 (229)
Q Consensus 90 GGA---~k~~~~~~~~l-g~~~~k~dEm~~li~G~~fLl 124 (229)
--+ .+|.+.+++.+ ++++.-+||=-+....-..|.
T Consensus 69 ~~~~~v~~f~~~L~~~~~~ipV~~~DEr~TT~~A~~~l~ 107 (135)
T PF03652_consen 69 EQARRVRKFAEELKKRFPGIPVILVDERLTTKEAERRLR 107 (135)
T ss_dssp CCHHHHHHHHHHHHHHH-TSEEEEEECSCSHHCCHCCHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEECCChhHHHHHHHHH
Confidence 222 58888999998 999999999777666655553
No 72
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.33 E-value=1.8e+02 Score=23.28 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=52.1
Q ss_pred EEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHHHHHHhcCc--eecC------Cc-h--
Q 027043 24 LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNL--HLAG------GG-A-- 92 (229)
Q Consensus 24 igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~~~i--~~TG------GG-A-- 92 (229)
+|||.|-.-+=++..++... ....-..+.... ....++...+++++..+ .+-| |- +
T Consensus 1 laiD~G~kriGvA~~d~~~~------------~a~pl~~i~~~~-~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~ 67 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGW------------TAQGIPTIKAQD-GEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPL 67 (130)
T ss_pred CeEccCCCeEEEEEECCCCC------------EEeceEEEEecC-CcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHH
Confidence 48899998888887442110 000111222111 11235555566666433 1222 11 2
Q ss_pred ----hhchHHHHHHhCCccceechhhhhhhhHHHHHh
Q 027043 93 ----YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 125 (229)
Q Consensus 93 ----~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~ 125 (229)
.+|.+.+++.+++++.-+||=-+....-..|..
T Consensus 68 a~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l~~ 104 (130)
T TIGR00250 68 TERAQKFANRLEGRFGVPVVLWDERLSTVEAESGLFA 104 (130)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHHHH
Confidence 388888888889999999998888877776653
No 73
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=35.45 E-value=29 Score=31.73 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=24.1
Q ss_pred ceecCCchhhchHHHHHHhCC---ccceec-hhhhhhhhH
Q 027043 85 LHLAGGGAYKFADLIKEKLGV---VLDKED-EMDCLVTGA 120 (229)
Q Consensus 85 i~~TGGGA~k~~~~~~~~lg~---~~~k~d-Em~~li~G~ 120 (229)
|.+|||||.-+++.|++.++. +++..+ ---|+++|+
T Consensus 276 I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~ 315 (318)
T PF06406_consen 276 IFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFANVRGF 315 (318)
T ss_dssp EEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGHHHHHH
T ss_pred EEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhhHHHHH
Confidence 567999999999999999874 332222 334666664
No 74
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=34.85 E-value=28 Score=32.55 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=16.2
Q ss_pred CeEEEEeCCceeEEEEEe
Q 027043 22 SHLALDIGGSLIKVVYFL 39 (229)
Q Consensus 22 ~~igiDIGGSL~Kivy~~ 39 (229)
.-|.+|||||+|+++-+.
T Consensus 129 ~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CEEEEEcCccceeeEEec
Confidence 478999999999999975
No 75
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=34.55 E-value=2.6e+02 Score=27.56 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=60.9
Q ss_pred ceecCCchhhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCc-eEE
Q 027043 85 LHLAGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSG-VSM 163 (229)
Q Consensus 85 i~~TGGGA~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSG-vSi 163 (229)
+..||-|..... +.. -..+.|+.|..+|+.||.... =-++.||-= .-+
T Consensus 233 ivaTGYGR~~i~------f~a-d~vitEItcHA~GA~~l~P~v------------------------rTIIDIGGQDsK~ 281 (432)
T TIGR02259 233 LVGTGYGRVRLP------FPK-EHIRSEILCHGLGAHLMYPGT------------------------RTVLDIGGQDTKG 281 (432)
T ss_pred EEEECccccccc------ccc-cceeeeHHHHHHHHHHHCCCC------------------------CEEEEeCCCceEE
Confidence 456999875331 100 012599999999999995211 145566652 235
Q ss_pred EEEeCCC---ceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCC
Q 027043 164 IKVDGDG---KFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGN 209 (229)
Q Consensus 164 ~kV~~~~---~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd 209 (229)
++++.++ +|..=.=++-|-|.|+--..-..+. +.+|+-++|.+.+
T Consensus 282 I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi-~leEl~~lA~~a~ 329 (432)
T TIGR02259 282 IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNM-GLHELGPLAMKSS 329 (432)
T ss_pred EEEcCCCcEeeeeecCcccccchHHHHHHHHHcCC-CHHHHHHHHhcCC
Confidence 5665433 4555566777888888877777775 8899999988876
No 76
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=34.05 E-value=39 Score=30.93 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=24.7
Q ss_pred ccEEEEecCCceE-EEEEeCC-CceEEeeccc-cCchhHH-hhhhhhcC
Q 027043 150 YPYLLVNIGSGVS-MIKVDGD-GKFERISGTS-VGGGTFW-GLGRLLTN 194 (229)
Q Consensus 150 yPyLlVNIGSGvS-i~kV~~~-~~~~RVgGss-iGGGT~~-GL~~LLtg 194 (229)
-..|+|-||.+|. +..|.+. ....+..|+. +|--.+. .+.+.|..
T Consensus 164 ~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 164 ESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp SEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred CcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 4589999999998 6667652 2344566654 4544433 44555543
No 77
>PRK00047 glpK glycerol kinase; Provisional
Probab=33.68 E-value=32 Score=33.22 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.1
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
.+|||+|+|.+|.+-|....
T Consensus 7 ~lgiD~GTts~Ka~l~d~~g 26 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDHDG 26 (498)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 58999999999999887543
No 78
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=33.07 E-value=67 Score=30.99 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=29.6
Q ss_pred CceecCCchh--hchHHHHHHhCCccceechhhhhhhhHHHHH
Q 027043 84 NLHLAGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 124 (229)
Q Consensus 84 ~i~~TGGGA~--k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl 124 (229)
.|.++||||. .+-.++.+.+|+++.+.++ ++-..|.-.+.
T Consensus 378 ~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-ea~alGaa~~a 419 (471)
T PRK10640 378 QLHIVGGGCQNALLNQLCADACGIRVIAGPV-EASTLGNIGIQ 419 (471)
T ss_pred eEEEECChhhhHHHHHHHHHHhCCCeeeCCh-hHHHHHHHHHH
Confidence 4678999983 5667777889999987765 77666666554
No 79
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=32.91 E-value=69 Score=31.45 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=33.4
Q ss_pred CceecCCch--hhchHHHHHHhCCccceechhhhhhhhHHHHHh
Q 027043 84 NLHLAGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 125 (229)
Q Consensus 84 ~i~~TGGGA--~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~ 125 (229)
.|.++|||| -.+-.++.+.+|.++.+.++=++-..|+-.|..
T Consensus 446 ~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~ 489 (541)
T TIGR01315 446 SIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLGA 489 (541)
T ss_pred EEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHHHHHHHHHH
Confidence 367799998 356677778899999999888888888877753
No 80
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=32.84 E-value=64 Score=28.21 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=15.1
Q ss_pred eEEEEeCCceeEEEEEe
Q 027043 23 HLALDIGGSLIKVVYFL 39 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~ 39 (229)
..-|||||.-+|+..+.
T Consensus 93 ~~vidiGgqd~k~i~~~ 109 (248)
T TIGR00241 93 RGVIDIGGQDSKVIKID 109 (248)
T ss_pred CEEEEecCCeeEEEEEC
Confidence 45899999999999976
No 81
>PRK04123 ribulokinase; Provisional
Probab=30.45 E-value=63 Score=31.62 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=30.5
Q ss_pred CceecCCc-h--hhchHHHHHHhCCccceechhhhhhhhHHHHH
Q 027043 84 NLHLAGGG-A--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 124 (229)
Q Consensus 84 ~i~~TGGG-A--~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl 124 (229)
.|.++||| | -.+-.++.+.+|.++.+.++-++-..|+-.+.
T Consensus 441 ~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA 484 (548)
T PRK04123 441 EVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFA 484 (548)
T ss_pred eEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHH
Confidence 47889999 6 35566777889999987777777667766664
No 82
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=30.32 E-value=37 Score=30.57 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=24.9
Q ss_pred ccEEEEecCCceEEEEEeCCCceEEeeccccCchhHH
Q 027043 150 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFW 186 (229)
Q Consensus 150 yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGGGT~~ 186 (229)
...++|++|.|++=+-+=..+.....+...+||-.|-
T Consensus 152 ~~~lVvDiG~gttdvs~v~~g~~~~~~~~~lGG~~id 188 (335)
T PRK13930 152 VGNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMD 188 (335)
T ss_pred CceEEEEeCCCeEEEEEEEeCCEEeecCcCchhHHHH
Confidence 3479999999987443333344555667778887764
No 83
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=29.90 E-value=44 Score=29.83 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCceecCCch--hhchHHHHHHhCCccceechh-hhhhhhH
Q 027043 73 IIDCLEFIRSKNLHLAGGGA--YKFADLIKEKLGVVLDKEDEM-DCLVTGA 120 (229)
Q Consensus 73 i~~~i~~i~~~~i~~TGGGA--~k~~~~~~~~lg~~~~k~dEm-~~li~G~ 120 (229)
+.+.++...-..|.+|||+| --..+.+++.+++++...+.= .|...|+
T Consensus 213 i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Ga 263 (267)
T PRK15080 213 VARHIEGQDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGI 263 (267)
T ss_pred HHHHHhcCCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHH
No 84
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=29.66 E-value=46 Score=27.29 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=27.7
Q ss_pred CceecCCch--hhchHHHHHHhCCccceechhhhhhhhHHHH
Q 027043 84 NLHLAGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFL 123 (229)
Q Consensus 84 ~i~~TGGGA--~k~~~~~~~~lg~~~~k~dEm~~li~G~~fL 123 (229)
.|.++||++ --+-.++.+.++.++.+.+.=++-..|.-++
T Consensus 152 ~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~ 193 (198)
T PF02782_consen 152 RIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALL 193 (198)
T ss_dssp EEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHH
T ss_pred eeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHH
Confidence 467799998 3556677778999998876555555555443
No 85
>PRK10331 L-fuculokinase; Provisional
Probab=29.30 E-value=44 Score=32.01 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.2
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
.+|||+|.|.+|.+-|+...
T Consensus 4 ~lgID~GTt~~Ka~l~d~~G 23 (470)
T PRK10331 4 ILVLDCGATNVRAIAVDRQG 23 (470)
T ss_pred EEEEecCCCceEEEEEcCCC
Confidence 58999999999999987543
No 86
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=28.25 E-value=26 Score=32.62 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.5
Q ss_pred CCeEEEEeCCceeEEEE
Q 027043 21 ISHLALDIGGSLIKVVY 37 (229)
Q Consensus 21 ~~~igiDIGGSL~Kivy 37 (229)
++-+||||||-.||++-
T Consensus 3 ~kilGiDIGGAntk~a~ 19 (330)
T COG1548 3 MKILGIDIGGANTKIAS 19 (330)
T ss_pred ceEEEeeccCccchhhh
Confidence 56789999999999998
No 87
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=28.19 E-value=49 Score=32.21 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=26.6
Q ss_pred CceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHh
Q 027043 170 GKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELS 205 (229)
Q Consensus 170 ~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA 205 (229)
+.|.+.+++..||..+..+.+..--..++.++...+
T Consensus 294 ~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~ 329 (502)
T COG1070 294 GWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEA 329 (502)
T ss_pred CeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHH
Confidence 455678888889999988888876654666666554
No 88
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=28.16 E-value=2.7e+02 Score=26.39 Aligned_cols=122 Identities=13% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHH-HHHHhcC-------------
Q 027043 19 SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCL-EFIRSKN------------- 84 (229)
Q Consensus 19 ~~~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i-~~i~~~~------------- 84 (229)
...+.+.=|||||.+.+.-++..+.+. .....+....|+ .+++++ +|+.+..
T Consensus 4 ~~~p~LvgDIGGTnaRfaLv~~a~~~~------------~~~~~~~~~dyp--sle~av~~yl~~~~~~~~~~a~~AiAg 69 (320)
T COG0837 4 MGYPRLVGDIGGTNARFALVEIAPAEP------------LQAETYACADYP--SLEEAVQDYLSEHTAVAPRSACFAIAG 69 (320)
T ss_pred CCCceEEEecCCcceEEEEeccCCCCc------------cccceecccCcC--CHHHHHHHHHHHhhccCccceEEEEec
Confidence 345666669999999999987544211 111334444455 477777 5776541
Q ss_pred ------ceecCCchhhchHHHHHHhCC-ccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEec
Q 027043 85 ------LHLAGGGAYKFADLIKEKLGV-VLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNI 157 (229)
Q Consensus 85 ------i~~TGGGA~k~~~~~~~~lg~-~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNI 157 (229)
+.+|=.--.-=.+.++..||. .+.-.+.|++...++-.|-.+ ..-+.-.. .+..--|..+.--
T Consensus 70 Pv~gd~v~lTN~~W~~s~~~~r~~Lgl~~v~liNDF~A~A~Ai~~l~~~---dl~qigg~-------~~~~~a~~avlGP 139 (320)
T COG0837 70 PIDGDEVRLTNHDWVFSIARMRAELGLDHLSLINDFAAQALAIPRLGAE---DLEQIGGG-------KPEPNAPRAVLGP 139 (320)
T ss_pred CccCCEEeeecCcccccHHHHHHhcCCCcEEEechHHHHHhhccccCHH---HHHHhcCC-------CCCCCCceEEEcC
Confidence 122433322223445566785 667789999998887766421 00000000 1233467788888
Q ss_pred CCc--eEEE
Q 027043 158 GSG--VSMI 164 (229)
Q Consensus 158 GSG--vSi~ 164 (229)
||| |+-+
T Consensus 140 GTGLGVa~L 148 (320)
T COG0837 140 GTGLGVAGL 148 (320)
T ss_pred CCCcceEEE
Confidence 774 5544
No 89
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=27.89 E-value=47 Score=32.19 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=17.2
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
-+|||+|.|.+|.+-|+...
T Consensus 4 ~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 57999999999999988644
No 90
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=27.75 E-value=4.7e+02 Score=23.86 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=55.5
Q ss_pred chHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCceEE
Q 027043 95 FADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFER 174 (229)
Q Consensus 95 ~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~~~~~~R 174 (229)
+..-+...++++++-++.++|-.....+- . .--+|.+|+--|.=+++.+++ .++++.
T Consensus 88 ~ak~la~~~~~p~~~v~h~~aHa~sa~~~-s---------------------~~~~~lvL~vsGg~t~l~~~~-~~~~~~ 144 (322)
T TIGR03722 88 AARALALKLNKPLVGVNHCVAHIEIGRLT-T---------------------GAKDPVVLYVSGGNTQVIAYR-NGRYRV 144 (322)
T ss_pred HHHHHHHHhCCCeechhhHHHHHHhhhcc-C---------------------CCCCCeEEEEeCCceEEEEEe-CCeEEE
Confidence 35555666788888888888877544332 1 113566666667667788888 478999
Q ss_pred eeccc-cCchhHHhhhhhhcCCCC---HHHHHHHhhCCCC
Q 027043 175 ISGTS-VGGGTFWGLGRLLTNCKS---FDELLELSHQGNN 210 (229)
Q Consensus 175 VgGss-iGGGT~~GL~~LLtg~~~---fdeil~lA~~Gd~ 210 (229)
++.|. .+=|-|+--+..+.|... . ++-++|.+|+.
T Consensus 145 l~~t~d~s~GrlfDava~~LGl~~~G~~-~le~la~~~~~ 183 (322)
T TIGR03722 145 FGETLDIGLGNALDKFAREVGLGHPGGP-KIEELAEKGKE 183 (322)
T ss_pred EEEeccccchHHHHHHHHHhCCCCCChH-HHHHHHhcCCC
Confidence 98863 333444333333334322 2 44557777753
No 91
>PLN02295 glycerol kinase
Probab=27.51 E-value=48 Score=32.23 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=16.8
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
-+|||+|.|.+|.+-|+...
T Consensus 2 vlgID~GTts~Ka~l~d~~G 21 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDA 21 (512)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 37999999999999887543
No 92
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=26.81 E-value=58 Score=31.75 Aligned_cols=36 Identities=33% Similarity=0.680 Sum_probs=25.8
Q ss_pred CccEEEEecCCc---eEEEEEeCCCceEEe---eccccCchhH
Q 027043 149 LYPYLLVNIGSG---VSMIKVDGDGKFERI---SGTSVGGGTF 185 (229)
Q Consensus 149 ~yPyLlVNIGSG---vSi~kV~~~~~~~RV---gGssiGGGT~ 185 (229)
...+|++.+|.| +|++.+.. +.++-+ |...+||-.|
T Consensus 187 ~~~vlv~D~Gggt~dvs~~~~~~-~~~~v~~~~~~~~lGG~~~ 228 (602)
T PF00012_consen 187 GKTVLVVDFGGGTFDVSVVEFSN-GQFEVLATAGDNNLGGRDF 228 (602)
T ss_dssp EEEEEEEEEESSEEEEEEEEEET-TEEEEEEEEEETTCSHHHH
T ss_pred ccceeccccccceEeeeehhccc-cccccccccccccccccee
Confidence 346899999998 57888876 566543 3466887766
No 93
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=26.72 E-value=1.6e+02 Score=28.65 Aligned_cols=94 Identities=15% Similarity=0.101 Sum_probs=58.1
Q ss_pred hchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCceE
Q 027043 94 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFE 173 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~~~~~~ 173 (229)
-++.-+...+++|++.++.++|-+....+. . ...+|..|+--|..++++.+++ ++|+
T Consensus 90 ~~ak~la~~~~~~~~~v~h~~aH~~~a~~~-~---------------------~~~~~l~l~vsGg~t~~~~~~~-~~~~ 146 (535)
T PRK09605 90 TAARALALSLDVPLIGVNHCVAHVEIGRLT-T---------------------GAEDPVTLYVSGGNTQVLAYLN-GRYR 146 (535)
T ss_pred HHHHHHHHHhCCCeecccHHHHHHHHhhhc-c---------------------CCCCCeEEEEecCCeEEEEEcC-CeEE
Confidence 345566667899999999999987654432 1 1135677777777888999998 8999
Q ss_pred Eeeccc-cCchhHHhhhhhhcCCCCH--HHHHHHhhCCCC
Q 027043 174 RISGTS-VGGGTFWGLGRLLTNCKSF--DELLELSHQGNN 210 (229)
Q Consensus 174 RVgGss-iGGGT~~GL~~LLtg~~~f--deil~lA~~Gd~ 210 (229)
+++.|. ..-|-++--+..+.|.... -.+..+|..|+.
T Consensus 147 ~l~~t~d~S~G~~fD~va~~Lg~~~~g~~~le~lA~~~~~ 186 (535)
T PRK09605 147 VFGETLDIGVGNALDKFARHVGLPHPGGPKIEKLAKDGKK 186 (535)
T ss_pred EEEeecchhhhHHHHHHHHHhCCCCCCCHHHHHHHhcCCC
Confidence 998753 2223333322222232211 235566777753
No 94
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=26.29 E-value=49 Score=31.98 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=17.4
Q ss_pred CCCCeEEEEeCCceeEEEEE
Q 027043 19 SQISHLALDIGGSLIKVVYF 38 (229)
Q Consensus 19 ~~~~~igiDIGGSL~Kivy~ 38 (229)
+.+..+|||||-|+|-++|.
T Consensus 3 e~ilSVGIDiGTsTTQvifS 22 (473)
T COG4819 3 EQILSVGIDIGTSTTQVIFS 22 (473)
T ss_pred ceeeeeeeeccCceeeeeee
Confidence 45788999999999999984
No 95
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=26.21 E-value=37 Score=29.28 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=8.2
Q ss_pred CeEEEEeCCceeE
Q 027043 22 SHLALDIGGSLIK 34 (229)
Q Consensus 22 ~~igiDIGGSL~K 34 (229)
.+-|||||.||+-
T Consensus 121 A~aGiDIGdTlIG 133 (172)
T PF04260_consen 121 ADAGIDIGDTLIG 133 (172)
T ss_dssp BSEEEEESS---G
T ss_pred eccCcccccceee
Confidence 5679999999973
No 96
>PRK15027 xylulokinase; Provisional
Probab=26.18 E-value=60 Score=31.24 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.3
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
.+|||+|.|.+|.+-|+...
T Consensus 2 ~lgID~GTts~Ka~l~d~~G 21 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQG 21 (484)
T ss_pred EEEEEecccceEEEEEcCCC
Confidence 58999999999999998543
No 97
>PRK13322 pantothenate kinase; Reviewed
Probab=26.01 E-value=86 Score=27.90 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=24.9
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCc
Q 027043 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGG 182 (229)
Q Consensus 149 ~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGG 182 (229)
..|.|+|++||-+.+=.|+.++ +++||..+=|
T Consensus 115 ~~~~lViD~GTA~TiD~v~~~g--~~~GG~I~PG 146 (246)
T PRK13322 115 KNACLVIDCGTAVTIDLVDADG--QHLGGYICPG 146 (246)
T ss_pred CCCEEEEEcCCeeEEEEEcCCC--cEeeeEEccC
Confidence 3479999999999999998755 4667765544
No 98
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=25.93 E-value=55 Score=31.34 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.3
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
-+|||+|.|.+|.+-|+...
T Consensus 3 ilgiD~GTss~K~~l~d~~g 22 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQG 22 (465)
T ss_pred EEEEecCCCcEEEEEEcCCC
Confidence 47999999999999998644
No 99
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=25.85 E-value=4.4e+02 Score=24.05 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=54.3
Q ss_pred hchHHHHHHhCCccceec-hhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCce
Q 027043 94 KFADLIKEKLGVVLDKED-EMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKF 172 (229)
Q Consensus 94 k~~~~~~~~lg~~~~k~d-Em~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~~~~~ 172 (229)
.|.++|+ ..|+++.-+| +.-|+.+-+.++....+++ ....+.++|+||...+-+.+-.+++.
T Consensus 140 ~~~~~~~-~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~----------------~~~~~~~lvdiG~~~t~~~i~~~g~~ 202 (340)
T PF11104_consen 140 SYVELFE-EAGLKPVAVDVEAFALARLFEFLEPQLPDE----------------EDAETVALVDIGASSTTVIIFQNGKP 202 (340)
T ss_dssp HHHHHHH-HTT-EEEEEEEHHHHGGGGGHHHHHTST--------------------T-EEEEEEE-SS-EEEEEEETTEE
T ss_pred HHHHHHH-HcCCceEEEeehHHHHHHHHHHHHHhCCcc----------------cccceEEEEEecCCeEEEEEEECCEE
Confidence 3455554 5788777665 4567777777765433311 12346899999997776666555666
Q ss_pred EEeeccccCchhHHh-hhhhhcCCCCHHHHHHHhhCC
Q 027043 173 ERISGTSVGGGTFWG-LGRLLTNCKSFDELLELSHQG 208 (229)
Q Consensus 173 ~RVgGssiGGGT~~G-L~~LLtg~~~fdeil~lA~~G 208 (229)
.-.--..+||..+-- +++. .+ -+++++-++-..+
T Consensus 203 ~f~R~i~~G~~~l~~~i~~~-~~-i~~~~Ae~~k~~~ 237 (340)
T PF11104_consen 203 IFSRSIPIGGNDLTEAIARE-LG-IDFEEAEELKRSG 237 (340)
T ss_dssp EEEEEES-SHHHHHHHHHHH-TT---HHHHHHHHHHT
T ss_pred EEEEEEeeCHHHHHHHHHHh-cC-CCHHHHHHHHhcC
Confidence 555567888888864 4444 33 4777776554433
No 100
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=25.48 E-value=56 Score=31.81 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=17.4
Q ss_pred eEEEEeCCceeEEEEEeecC
Q 027043 23 HLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~~~ 42 (229)
-+|||+|.|.+|.+-|+...
T Consensus 5 ~lgID~GTts~Ka~l~d~~G 24 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDLNG 24 (520)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 57999999999999998654
No 101
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=24.82 E-value=57 Score=29.48 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=21.4
Q ss_pred cEEEEecCCceEEEEEeCCCceEEeeccccCchhH
Q 027043 151 PYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTF 185 (229)
Q Consensus 151 PyLlVNIGSGvSi~kV~~~~~~~RVgGssiGGGT~ 185 (229)
..++|.+|.|++=+-+-..+.+.--+.+.+||--|
T Consensus 149 ~~lvvDiGggttdvs~v~~~~~~~~~~~~lGG~~i 183 (334)
T PRK13927 149 GSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKF 183 (334)
T ss_pred eEEEEEeCCCeEEEEEEecCCeEeeCCcCChHHHH
Confidence 47999999998744333222343334456777665
No 102
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=23.89 E-value=61 Score=27.01 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=15.1
Q ss_pred EEEEeCCceeEEEEEeec
Q 027043 24 LALDIGGSLIKVVYFLRS 41 (229)
Q Consensus 24 igiDIGGSL~Kivy~~~~ 41 (229)
+|||||.|.+|+|-.+..
T Consensus 2 ~~lDIGs~~ik~vv~~~~ 19 (187)
T smart00842 2 VGLDIGTSKIKALVAEVD 19 (187)
T ss_pred EEEEeccceEEEEEEEEc
Confidence 699999999999876643
No 103
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=23.57 E-value=5.7e+02 Score=23.33 Aligned_cols=128 Identities=21% Similarity=0.411 Sum_probs=75.1
Q ss_pred cCCceEEeEecccCHHHHHHHHHhcCcee-----cCCch-hhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccE
Q 027043 59 LEGRLHFAKFETSKIIDCLEFIRSKNLHL-----AGGGA-YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAF 132 (229)
Q Consensus 59 ~~g~l~F~~f~t~~i~~~i~~i~~~~i~~-----TGGGA-~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f 132 (229)
..|+||-.-+.+..--+++++++...+.+ |=+-+ ....+.++ ++|.++.+.+=+.++-...+++.++.-..-|
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~-rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l 92 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQ-RLGFDVSEEEIFTSLPAARQYLEENQLRPYL 92 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHH-HhCCCccHHHhcCccHHHHHHHHhcCCCceE
Confidence 45666655566666677888888543322 33343 33333333 4788888888788888888888765432222
Q ss_pred EeeCCC-eeeeecCC---------------------------CCCccEEEEecCCceEEEEEeCCCceEEeeccccCchh
Q 027043 133 TYVDGQ-KEFVQIDQ---------------------------NDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGT 184 (229)
Q Consensus 133 ~~~~~~-~~~~~~~~---------------------------~~~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGGGT 184 (229)
-.++.- .+|-++++ .+..--+|+.||-| .=|+|+.|-.+|=|+
T Consensus 93 ~v~d~a~~dF~gidTs~pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~kg---------ryykr~~Gl~lgpG~ 163 (262)
T KOG3040|consen 93 IVDDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKG---------RYYKRVDGLCLGPGP 163 (262)
T ss_pred EEcccchhhCCCccCCCCCeEEEecCcccccHHHHHHHHHHHHcCCCCeEEEecCc---------eeeeeccccccCchH
Confidence 222221 11111111 11111245555533 468999999999999
Q ss_pred HHhhhhhhcCCC
Q 027043 185 FWGLGRLLTNCK 196 (229)
Q Consensus 185 ~~GL~~LLtg~~ 196 (229)
|+--...-||++
T Consensus 164 fv~aLeyatg~~ 175 (262)
T KOG3040|consen 164 FVAALEYATGCE 175 (262)
T ss_pred HHHHhhhccCce
Confidence 998888888764
No 104
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=23.20 E-value=78 Score=31.41 Aligned_cols=36 Identities=36% Similarity=0.722 Sum_probs=25.1
Q ss_pred CccEEEEecCCce---EEEEEeCCCceEEee--c-cccCchhH
Q 027043 149 LYPYLLVNIGSGV---SMIKVDGDGKFERIS--G-TSVGGGTF 185 (229)
Q Consensus 149 ~yPyLlVNIGSGv---Si~kV~~~~~~~RVg--G-ssiGGGT~ 185 (229)
.-.+|++.+|.|+ |++++.+ +.++-++ | ..+||--|
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~-~~~~v~~~~gd~~lGG~d~ 223 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGD-GVFEVLSTAGDTHLGGDDF 223 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecC-CeEEEEEecCCcccCchhH
Confidence 3458999999995 6888865 5665543 3 35777655
No 105
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=23.10 E-value=2.3e+02 Score=26.79 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=53.9
Q ss_pred hhchHHHHHHhCCccceechhhhhhhhHHHHHhhCCCccEEeeCCCeeeeecCCCCCccEEEEecCCceEEEEEeCCCce
Q 027043 93 YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKF 172 (229)
Q Consensus 93 ~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~yPyLlVNIGSGvSi~kV~~~~~~ 172 (229)
.-+..-|.-.+++|++-++.|++-+.-... .+ ...||..|+=-|-=|.++. .+.++|
T Consensus 90 ~~~Ak~LA~a~~~PligV~HlegHi~a~~l-~~---------------------~~~~Pl~LlVSGGhT~l~~-~~~~~~ 146 (345)
T PTZ00340 90 AVVARTLSLLWGKPLVGVNHCVAHIEMGRL-VT---------------------GAENPVVLYVSGGNTQVIA-YSEHRY 146 (345)
T ss_pred HHHHHHHHHHcCCCEeecchHHHHHHHHhh-cc---------------------CCCCCeEEEEeCCceEEEE-ecCCeE
Confidence 356667777789999999999998864332 11 1236744433343444554 777899
Q ss_pred EEeeccc---cCchhHHhhhhhhcCCC----CHHHHHHHhhCCC
Q 027043 173 ERISGTS---VGGGTFWGLGRLLTNCK----SFDELLELSHQGN 209 (229)
Q Consensus 173 ~RVgGss---iGGGT~~GL~~LLtg~~----~fdeil~lA~~Gd 209 (229)
+.+|.|. +|- .|=-.+++| |-. -=-.|-++|++|+
T Consensus 147 ~ilG~T~Dda~Ge-a~DKvar~L-GL~~yp~gGp~iE~lA~~g~ 188 (345)
T PTZ00340 147 RIFGETIDIAVGN-CLDRFARLL-NLSNDPAPGYNIEQLAKKGK 188 (345)
T ss_pred EEEEeecccchhH-HHHHHHHHh-CCCCCCCChHHHHHHHhhCC
Confidence 9999874 332 222233333 111 1234556678886
No 106
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=22.99 E-value=67 Score=30.33 Aligned_cols=63 Identities=25% Similarity=0.460 Sum_probs=44.7
Q ss_pred CccEEEEecCCc-eEEEEEeCCCceEEeeccc-----cCchhHHh-hhhhh--------------------cCCCCHHHH
Q 027043 149 LYPYLLVNIGSG-VSMIKVDGDGKFERISGTS-----VGGGTFWG-LGRLL--------------------TNCKSFDEL 201 (229)
Q Consensus 149 ~yPyLlVNIGSG-vSi~kV~~~~~~~RVgGss-----iGGGT~~G-L~~LL--------------------tg~~~fdei 201 (229)
...|++|-||-+ ||++.|.+-.-.--+|||+ +|||.+=| |+.+| .|.+|++|.
T Consensus 162 k~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~~~~fsK~~lf~gGa~~i~gv~sp~ef 241 (374)
T COG2441 162 KVNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANYLERFSKSLLFEGGAAYIAGVDSPEEF 241 (374)
T ss_pred hhhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHhhhhccHhheecccccccccCCCHHHH
Confidence 355799999987 7899998844445578865 77776544 22222 378899999
Q ss_pred HHHhhCCCCC
Q 027043 202 LELSHQGNNR 211 (229)
Q Consensus 202 l~lA~~Gd~~ 211 (229)
.++|+.+.|-
T Consensus 242 ~~~ake~enl 251 (374)
T COG2441 242 VKLAKEDENL 251 (374)
T ss_pred HHHhhcccch
Confidence 9999887653
No 107
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=22.88 E-value=62 Score=25.70 Aligned_cols=31 Identities=32% Similarity=0.632 Sum_probs=26.5
Q ss_pred ccccCchhHHhhhhhhcCCCCHHHHHHHhhC
Q 027043 177 GTSVGGGTFWGLGRLLTNCKSFDELLELSHQ 207 (229)
Q Consensus 177 GssiGGGT~~GL~~LLtg~~~fdeil~lA~~ 207 (229)
|--+||.-+=||+..|++..--..|.++|++
T Consensus 12 GVvlGGsliGglga~l~~~pPl~~m~~lA~~ 42 (102)
T PF14034_consen 12 GVVLGGSLIGGLGAFLTGQPPLKTMLDLAND 42 (102)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 5568888899999999999888899888853
No 108
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=22.86 E-value=98 Score=28.02 Aligned_cols=26 Identities=15% Similarity=0.471 Sum_probs=21.8
Q ss_pred cCCceEEeEecccCHHHHHHHHHhcCc
Q 027043 59 LEGRLHFAKFETSKIIDCLEFIRSKNL 85 (229)
Q Consensus 59 ~~g~l~F~~f~t~~i~~~i~~i~~~~i 85 (229)
.+||++|++ ...+++++++||+.+-+
T Consensus 211 ~GGRvffv~-~~~d~~~~i~yLe~~pV 236 (239)
T PF03744_consen 211 KGGRVFFVD-GSIDIEELIDYLENQPV 236 (239)
T ss_pred CCCEEEEEe-CCCCHHHHHHHHhcCcE
Confidence 799999998 56688999999987554
No 109
>PLN02295 glycerol kinase
Probab=22.30 E-value=1.1e+02 Score=29.74 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=32.0
Q ss_pred CceecCCch--hhchHHHHHHhCCccceechhhhhhhhHHHHHh
Q 027043 84 NLHLAGGGA--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 125 (229)
Q Consensus 84 ~i~~TGGGA--~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~ 125 (229)
.|.++|||| --+-.++.+.+|.++.+.++-++-..|+-.+..
T Consensus 415 ~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~ 458 (512)
T PLN02295 415 LLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAG 458 (512)
T ss_pred eEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHH
Confidence 367799998 356677778899999887877777778776653
No 110
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=22.10 E-value=1.1e+02 Score=29.81 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=30.1
Q ss_pred CceecCCc-h--hhchHHHHHHhCCccceechhhhhhhhHHHHH
Q 027043 84 NLHLAGGG-A--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 124 (229)
Q Consensus 84 ~i~~TGGG-A--~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl 124 (229)
.|.++||| | -.+-.++.+.+|+++.+...-++-..|+-.+.
T Consensus 438 ~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA 481 (536)
T TIGR01234 438 ELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFA 481 (536)
T ss_pred eEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHH
Confidence 46789999 6 35556777889999987777777677766654
No 111
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=22.03 E-value=2.2e+02 Score=23.60 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=57.3
Q ss_pred CCeEEEEeCCceeEEEEEeecCCCCCcccCCCCCCCCCcCCceEEeEecccCHHHHHHHHHhcCc---------eecCCc
Q 027043 21 ISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNL---------HLAGGG 91 (229)
Q Consensus 21 ~~~igiDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~i~~i~~~~i---------~~TGGG 91 (229)
+..+|+|.|--.+=++..++...- ...-..+....+....++...+.+++.++ +..|.-
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~~~------------A~pl~~i~~~~~~~~~~~~l~~li~~~~~~~vVVGlP~~m~g~~ 69 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILGSL------------ASPLETIKRKNGKPQDFNALLKLVKEYQVDTVVVGLPLNMDGTE 69 (141)
T ss_pred ceEEEEecCCceEEEEEecCCCcc------------ccchhhheeccccHhhHHHHHHHHHHhCCCEEEEecCcCCCCCc
Confidence 356899999999999986533210 00111122111111355565666665433 122222
Q ss_pred ------hhhchHHHHHHhCCccceechhhhhhhhHHHHHh
Q 027043 92 ------AYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 125 (229)
Q Consensus 92 ------A~k~~~~~~~~lg~~~~k~dEm~~li~G~~fLl~ 125 (229)
+.+|.+.+++++++++.-.||=-+.+..-.-|..
T Consensus 70 ~~~~~~~~~f~~~L~~r~~lpv~l~DERltTv~A~~~L~~ 109 (141)
T COG0816 70 GPRAELARKFAERLKKRFNLPVVLWDERLSTVEAERMLIE 109 (141)
T ss_pred chhHHHHHHHHHHHHHhcCCCEEEEcCccCHHHHHHHHHH
Confidence 3699999999999999999998888877776654
No 112
>PRK13329 pantothenate kinase; Reviewed
Probab=21.75 E-value=1.2e+02 Score=27.12 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=26.4
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCch
Q 027043 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGG 183 (229)
Q Consensus 149 ~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGGG 183 (229)
..|.|+|.+||-+.+=.|+.++ +++||..+=|=
T Consensus 118 ~~~~lViD~GTA~TiD~v~~~g--~~lGG~I~PGl 150 (249)
T PRK13329 118 ARPCLVVMVGTAVTVDALDADG--EFLGGLILPGH 150 (249)
T ss_pred CCCEEEEECCCceeEEEEcCCC--cEEEEEECcCH
Confidence 4589999999999999998865 46788766553
No 113
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=21.72 E-value=38 Score=25.35 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=34.1
Q ss_pred CceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeee
Q 027043 159 SGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGD 219 (229)
Q Consensus 159 SGvSi~kV~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~D 219 (229)
++..+=..+.++.+.- ||.-.+++|.++++..=.+.+|+++|.|
T Consensus 39 ~~f~LkY~Ddegd~v~-----------------ltsd~DL~eai~i~~~~~~~~v~l~v~~ 82 (82)
T cd06407 39 SAFDLKYLDDDEEWVL-----------------LTCDADLEECIDVYRSSGSHTIRLLVHA 82 (82)
T ss_pred CeeEEEEECCCCCeEE-----------------eecHHHHHHHHHHHHHCCCCeEEEEeeC
Confidence 5566667777776654 4457899999999988788999999875
No 114
>PRK13327 pantothenate kinase; Reviewed
Probab=21.31 E-value=1.5e+02 Score=26.51 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.3
Q ss_pred CccEEEEecCCceEEEEEeCCCceEEeeccccCchhH
Q 027043 149 LYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTF 185 (229)
Q Consensus 149 ~yPyLlVNIGSGvSi~kV~~~~~~~RVgGssiGGGT~ 185 (229)
..|.|+|.+||-+.+=.|+.++ +++||..+=|=.+
T Consensus 111 ~~~~lVVD~GTA~TiD~v~~~g--~~lGG~I~PG~~l 145 (242)
T PRK13327 111 DAPVLVVGVGTALTIDLLGADG--LHHGGRIAASPTT 145 (242)
T ss_pred CCCEEEEEcCCceEEEEECCCC--eEEEEEECccHHH
Confidence 3579999999999999998866 4678876655433
No 115
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=21.16 E-value=77 Score=31.01 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=17.3
Q ss_pred eEEEEeCCceeEEEEEe-ecC
Q 027043 23 HLALDIGGSLIKVVYFL-RSN 42 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~-~~~ 42 (229)
-+|||+|.|.+|.+-|+ ...
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G 23 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATG 23 (536)
T ss_pred EEEEecCCCceEEEEEECCCC
Confidence 48999999999999999 543
No 116
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.83 E-value=69 Score=33.04 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=16.2
Q ss_pred CeEEEEeCCceeEEEEEe
Q 027043 22 SHLALDIGGSLIKVVYFL 39 (229)
Q Consensus 22 ~~igiDIGGSL~Kivy~~ 39 (229)
+-+++|+|||.||+.-+.
T Consensus 279 ~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 279 NAIVFDMGGTSTDVALII 296 (674)
T ss_pred CEEEEEcCCcceeeeeee
Confidence 489999999999999776
No 117
>PRK04123 ribulokinase; Provisional
Probab=20.77 E-value=79 Score=30.91 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=16.3
Q ss_pred eEEEEeCCceeEEEEEee
Q 027043 23 HLALDIGGSLIKVVYFLR 40 (229)
Q Consensus 23 ~igiDIGGSL~Kivy~~~ 40 (229)
.+|||+|.|.+|.+-|+.
T Consensus 5 ~lgiD~GTts~Ka~l~d~ 22 (548)
T PRK04123 5 VIGLDFGTDSVRALLVDC 22 (548)
T ss_pred EEEEecCCCceEEEEEEC
Confidence 589999999999999884
No 118
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=20.63 E-value=66 Score=24.59 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=36.6
Q ss_pred CCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHhhCCCCCcCceEeee
Q 027043 158 GSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGD 219 (229)
Q Consensus 158 GSGvSi~kV~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~D 219 (229)
.++..+.+++.++.... ||--.|..|.+++|+.-.++.+++.|.+
T Consensus 41 ~~~~~L~YlDDEgD~Vl-----------------lT~D~DL~e~v~iar~~g~~~v~L~v~~ 85 (86)
T cd06409 41 THLYALSYVDDEGDIVL-----------------ITSDSDLVAAVLVARSAGLKKLDLHLHY 85 (86)
T ss_pred CCcccEEEEcCCCCEEE-----------------EeccchHHHHHHHHHHcCCCEEEEEEeC
Confidence 45667778888877653 5567999999999999999999999864
No 119
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=20.47 E-value=52 Score=30.79 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.5
Q ss_pred EEEEeCCceeEEEEEe
Q 027043 24 LALDIGGSLIKVVYFL 39 (229)
Q Consensus 24 igiDIGGSL~Kivy~~ 39 (229)
+|+||||-.+|++.++
T Consensus 1 ~G~DiGGA~~K~a~~~ 16 (318)
T TIGR03123 1 LGIDIGGANTKAAELD 16 (318)
T ss_pred CccccccceeeeEEec
Confidence 5899999999999875
No 120
>PTZ00107 hexokinase; Provisional
Probab=20.34 E-value=1.3e+02 Score=29.68 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.5
Q ss_pred CCCCCeEEEEeCCceeEEEEEeecC
Q 027043 18 ESQISHLALDIGGSLIKVVYFLRSN 42 (229)
Q Consensus 18 ~~~~~~igiDIGGSL~Kivy~~~~~ 42 (229)
.+.-..+|||+|||..+++.++-.+
T Consensus 71 ~E~G~fLAlDlGGTN~RV~~V~L~g 95 (464)
T PTZ00107 71 KEKGVYYAIDFGGTNFRAVRVSLRG 95 (464)
T ss_pred CccceEEEEecCCceEEEEEEEeCC
Confidence 4566789999999999999987543
No 121
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=20.21 E-value=3.2e+02 Score=23.29 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=26.2
Q ss_pred cccCchhHHhhhhhhcCCCCHHHHHHHhhCC
Q 027043 178 TSVGGGTFWGLGRLLTNCKSFDELLELSHQG 208 (229)
Q Consensus 178 ssiGGGT~~GL~~LLtg~~~fdeil~lA~~G 208 (229)
+.+-|+.++-|+++|-|.++.+|+.+.+..+
T Consensus 25 ~~l~~~~~~~L~~lLdG~rt~~eI~~~l~~~ 55 (193)
T TIGR03882 25 FALSGALYCQLAPLLDGRRTLDEIIAALAGR 55 (193)
T ss_pred EEEcchhHHHHHHHHcCCCCHHHHHHHhhcc
Confidence 3445788999999999999999998887664
Done!