BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027044
         (229 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/207 (56%), Positives = 145/207 (70%), Gaps = 12/207 (5%)

Query: 2   AQQPSFGGAAANPVAVISPQYCSPHPIDLAIVRKVMISSSGGFDVKDTNGNILFKVKDVF 61
           A  P  GG       V+ P+YC+P+PID AIVRK    + G F + D NGN+LFKVK+  
Sbjct: 18  APTPQAGGV------VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPV 71

Query: 62  AFMHRRRVLLDGAGNPIVTLREKAMSRHHRWQVFRGESTERRHLIFSAKRSRSGWFSSTT 121
             +H +RVLLDG+G P+VTLREK +S H RWQVFRG ST++R L+++ KRS        T
Sbjct: 72  FGLHDKRVLLDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSX--LQLKT 129

Query: 122 KLDVFLANNTREDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIVAQMHEKQTVKSIFLGKD 181
           KLDVFL +N  E  CDFRV    SWL    SC +YAG+S AIVAQ H K TV+S+FLGKD
Sbjct: 130 KLDVFLGHNKDEKRCDFRV--KGSWL--ERSCVVYAGESDAIVAQXHRKHTVQSVFLGKD 185

Query: 182 NFMVTVHPNVDYAFIVALIVILDEINR 208
           NF VTV+PNVDYAFI +L+VILD++NR
Sbjct: 186 NFSVTVYPNVDYAFIASLVVILDDVNR 212


>pdb|2MIB|A Chain A, The Structure Of Murine Interleukin-1 Beta At 2.8
           Angstroms Resolution
 pdb|8I1B|A Chain A, A Comparison Of The High Resolution Structures Of Human
           And Murine Interleukin-1b
          Length = 152

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 115 GWFSSTTKLD---VFLANNTREDVCDFRVVEGSS 145
            W+ ST++ +   VFL NN+ +D+ DF +   SS
Sbjct: 119 NWYISTSQAEHKPVFLGNNSGQDIIDFTMESVSS 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,176,559
Number of Sequences: 62578
Number of extensions: 232610
Number of successful extensions: 584
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 2
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)