Query 027044
Match_columns 229
No_of_seqs 107 out of 489
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 1.3E-43 2.8E-48 296.0 18.7 180 16-202 2-187 (187)
2 COG4894 Uncharacterized conser 100.0 9.3E-34 2E-38 222.8 9.1 154 28-209 6-159 (159)
3 PF03803 Scramblase: Scramblas 99.7 2.5E-14 5.5E-19 121.9 21.0 168 28-209 22-220 (221)
4 COG4894 Uncharacterized conser 98.6 1.1E-07 2.4E-12 75.7 6.8 103 22-129 24-139 (159)
5 KOG0621 Phospholipid scramblas 98.2 3E-05 6.6E-10 69.0 13.5 161 40-212 97-283 (292)
6 PF04525 Tub_2: Tubby C 2; In 97.9 7.6E-05 1.6E-09 62.2 9.5 86 50-143 11-98 (187)
7 PF03803 Scramblase: Scramblas 96.1 0.067 1.5E-06 45.3 10.3 66 44-113 78-149 (221)
8 COG4907 Predicted membrane pro 89.8 0.21 4.5E-06 47.2 2.2 18 178-195 511-528 (595)
9 COG4907 Predicted membrane pro 84.6 0.59 1.3E-05 44.3 1.9 11 180-190 542-552 (595)
10 KOG0621 Phospholipid scramblas 63.5 53 0.0011 29.5 8.6 47 41-87 187-239 (292)
11 KOG3950 Gamma/delta sarcoglyca 60.0 12 0.00025 32.9 3.6 10 181-190 261-270 (292)
12 PF04790 Sarcoglycan_1: Sarcog 59.1 33 0.00072 30.3 6.5 49 28-76 103-154 (264)
13 PF10917 DUF2708: Protein of u 49.4 15 0.00033 23.2 2.0 13 202-214 13-25 (43)
14 PF08949 DUF1860: Domain of un 48.9 5.2 0.00011 32.5 -0.3 10 216-225 69-78 (220)
15 PF13860 FlgD_ig: FlgD Ig-like 48.8 37 0.0008 24.0 4.3 16 67-82 28-43 (81)
16 TIGR00156 conserved hypothetic 46.4 87 0.0019 24.6 6.3 21 66-86 73-93 (126)
17 PF01167 Tub: Tub family; Int 44.5 2.1E+02 0.0046 24.8 9.2 62 88-158 23-87 (246)
18 PF06682 DUF1183: Protein of u 44.5 27 0.00059 31.7 3.6 17 137-158 109-125 (318)
19 PF14086 DUF4266: Domain of un 44.4 16 0.00035 24.0 1.6 10 216-225 37-46 (50)
20 PF09008 Head_binding: Head bi 39.8 47 0.001 25.5 3.7 56 22-83 50-105 (114)
21 PF08269 Cache_2: Cache domain 39.6 6.2 0.00013 28.6 -1.1 37 43-79 58-94 (95)
22 TIGR03784 marine_sortase sorta 38.9 49 0.0011 27.3 4.1 19 41-59 112-131 (174)
23 TIGR02150 IPP_isom_1 isopenten 38.5 65 0.0014 25.6 4.7 52 44-95 1-60 (158)
24 PF04076 BOF: Bacterial OB fol 37.2 63 0.0014 24.4 4.1 21 66-86 50-70 (103)
25 KOG0105 Alternative splicing f 36.9 24 0.00052 29.9 1.9 6 182-187 72-77 (241)
26 PF02974 Inh: Protease inhibit 35.8 1.8E+02 0.0039 21.5 6.4 31 65-98 61-91 (99)
27 PF15529 Toxin_49: Putative to 35.2 39 0.00085 25.0 2.6 18 42-59 30-47 (89)
28 PRK15393 NUDIX hydrolase YfcD; 34.7 94 0.002 25.3 5.2 57 42-98 10-73 (180)
29 cd06166 Sortase_D_5 Sortase D 33.8 63 0.0014 24.8 3.8 20 41-60 68-87 (126)
30 cd05828 Sortase_D_4 Sortase D 33.3 62 0.0013 24.9 3.6 20 41-60 65-84 (127)
31 COG4998 Predicted endonuclease 32.5 83 0.0018 26.1 4.3 35 150-191 22-56 (209)
32 PF12119 DUF3581: Protein of u 31.7 2.9E+02 0.0064 23.7 7.6 31 136-172 175-207 (218)
33 KOG3590 Protein kinase A ancho 31.7 38 0.00083 32.1 2.5 29 199-227 57-85 (602)
34 cd05830 Sortase_D_5 Sortase D 29.9 1.5E+02 0.0033 23.0 5.4 22 40-61 68-89 (137)
35 PF09475 Dot_icm_IcmQ: Dot/Icm 29.7 18 0.00038 30.0 0.0 64 19-90 95-158 (179)
36 PF07680 DoxA: TQO small subun 28.4 64 0.0014 25.6 3.0 36 55-90 36-73 (133)
37 COG1021 EntE Peptide arylation 26.8 38 0.00083 32.2 1.6 41 43-83 345-385 (542)
38 PF04170 NlpE: NlpE N-terminal 26.5 1.5E+02 0.0033 21.2 4.6 12 67-78 72-83 (87)
39 PLN02552 isopentenyl-diphospha 25.4 2E+02 0.0044 25.1 5.9 57 41-97 22-91 (247)
40 PRK12816 flgG flagellar basal 25.2 74 0.0016 28.0 3.1 44 36-80 94-138 (264)
41 PF11906 DUF3426: Protein of u 25.0 1.2E+02 0.0026 23.7 4.0 31 50-80 65-103 (149)
42 PRK10523 lipoprotein involved 25.0 1.3E+02 0.0028 26.2 4.5 26 52-77 82-107 (234)
43 PF12396 DUF3659: Protein of u 24.7 2E+02 0.0043 19.8 4.5 39 45-83 14-58 (64)
44 PF12690 BsuPI: Intracellular 24.4 53 0.0011 23.6 1.7 15 43-57 27-41 (82)
45 smart00634 BID_1 Bacterial Ig- 24.3 1.8E+02 0.004 20.7 4.7 12 68-79 24-35 (92)
46 PRK00122 rimM 16S rRNA-process 23.2 2E+02 0.0044 23.2 5.2 15 69-83 109-123 (172)
47 TIGR02273 16S_RimM 16S rRNA pr 22.4 1.8E+02 0.0039 23.4 4.7 16 68-83 103-118 (165)
48 PRK12691 flgG flagellar basal 22.2 1.1E+02 0.0025 26.6 3.7 43 37-80 95-138 (262)
49 PRK12813 flgD flagellar basal 21.4 1.1E+02 0.0024 26.4 3.4 15 67-81 127-141 (223)
50 PHA01399 membrane protein P6 20.8 53 0.0011 27.8 1.2 9 214-222 205-213 (242)
51 PRK10590 ATP-dependent RNA hel 20.4 65 0.0014 30.3 1.9 12 39-50 147-158 (456)
52 TIGR02488 flgG_G_neg flagellar 20.4 97 0.0021 27.0 2.9 43 37-80 93-136 (259)
53 TIGR01076 sortase_fam LPXTG-si 20.4 3.2E+02 0.0069 21.1 5.6 20 41-60 67-86 (136)
54 PRK06655 flgD flagellar basal 20.3 1.5E+02 0.0031 25.6 3.9 35 44-78 130-167 (225)
55 PRK13828 rimM 16S rRNA-process 20.2 2.5E+02 0.0054 22.6 5.1 13 71-83 91-103 (161)
56 PRK12640 flgF flagellar basal 20.1 1E+02 0.0022 26.9 2.9 42 38-80 81-123 (246)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=1.3e-43 Score=296.01 Aligned_cols=180 Identities=36% Similarity=0.702 Sum_probs=110.5
Q ss_pred EEecCCccCCCCeEEEEEEeeeeecCCCeEEEcCCCCEEEEEEe-cCCcccceEEEEcCCCCcEEEEEeccccccceEEE
Q 027044 16 AVISPQYCSPHPIDLAIVRKVMISSSGGFDVKDTNGNILFKVKD-VFAFMHRRRVLLDGAGNPIVTLREKAMSRHHRWQV 94 (229)
Q Consensus 16 ~vv~~~~~~~~~~~l~vk~k~~s~s~~~f~V~D~~G~~vf~V~g-~~~s~~~k~~l~D~~G~pL~~i~~k~~s~~~~w~v 94 (229)
+||.++||+++|++|+||+|.+++++++|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.++++++|++
T Consensus 2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i 81 (187)
T PF04525_consen 2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI 81 (187)
T ss_dssp -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence 46799999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred EEcCCCcccceEEEEEecccccccCCceEEEEEcCCC-----CCceeeEEEeecCCcCcCCCeeEEEeCCCCceEEEEEe
Q 027044 95 FRGESTERRHLIFSAKRSRSGWFSSTTKLDVFLANNT-----REDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIVAQMHE 169 (229)
Q Consensus 95 ~~g~~~~~~~~l~~vkk~~~~~~~~k~~~~v~~~~~~-----~~~~~~~~v~~G~~~~~~~~~~~I~~~~~g~~VA~V~r 169 (229)
|++++.+..+++|++|+++ .+..++++.+++.... .++.++|+| +| +|+ +++|+|++. +|++||+|+|
T Consensus 82 ~~~~~~~~~~~i~tvkk~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i-~G-~~~--~~~~~I~~~-~g~~VA~i~r 154 (187)
T PF04525_consen 82 YRGGGSEGKKPIFTVKKKS--MLQNKDSFDVFLPPKSNISIDDSEGPDFEI-KG-NFW--DRSFTIYDS-GGRVVAEISR 154 (187)
T ss_dssp EETT---GGGEEEEEE------------EEEEET--T----------SEEE-ES--TT--TT--EEEEC-C--EEEEEEE
T ss_pred EECCCCccCceEEEEEEec--ccCCCcceeEEEecccceeecCCCCceEEE-EE-Eec--CcEEEEEEc-CCCEEEEEec
Confidence 9999765567899999986 5677889999987432 246679999 99 999 999999953 3999999999
Q ss_pred eeeeeeeeeeceeEEEEEeCCCCHHHHHHHHHH
Q 027044 170 KQTVKSIFLGKDNFMVTVHPNVDYAFIVALIVI 202 (229)
Q Consensus 170 k~~~~~~~~g~dtY~l~V~pgvD~ali~alvi~ 202 (229)
|+..+.+++|+|+|.|+|+||+|++||||||||
T Consensus 155 k~~~k~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 155 KYSSKKWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp ----------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred ccceeeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 988778899999999999999999999999986
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.3e-34 Score=222.81 Aligned_cols=154 Identities=21% Similarity=0.366 Sum_probs=140.9
Q ss_pred eEEEEEEeeeeecCCCeEEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEEEEeccccccceEEEEEcCCCcccceEE
Q 027044 28 IDLAIVRKVMISSSGGFDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVTLREKAMSRHHRWQVFRGESTERRHLIF 107 (229)
Q Consensus 28 ~~l~vk~k~~s~s~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~k~~s~~~~w~v~~g~~~~~~~~l~ 107 (229)
.+|.|+||+.++ +|+|.|+|.+|+.+|+|+|+.+++++.++|.|++|.+|.+|++|.++++|+|+|-+|+ +. +|
T Consensus 6 ~tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~----g~-~~ 79 (159)
T COG4894 6 ITLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGG----GT-VC 79 (159)
T ss_pred HhHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCC----CC-EE
Confidence 478999999999 8999999999999999999999999999999999999999999999999999999988 34 88
Q ss_pred EEEecccccccCCceEEEEEcCCCCCceeeEEEeecCCcCcCCCeeEEEeCCCCceEEEEEeeeeeeeeeeeceeEEEEE
Q 027044 108 SAKRSRSGWFSSTTKLDVFLANNTREDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIVAQMHEKQTVKSIFLGKDNFMVTV 187 (229)
Q Consensus 108 ~vkk~~~~~~~~k~~~~v~~~~~~~~~~~~~~v~~G~~~~~~~~~~~I~~~~~g~~VA~V~rk~~~~~~~~g~dtY~l~V 187 (229)
.++|+. +++++++.+.. .+|++ +| |+| +.+|++.++ ++++|+|+||| ++|+|||.|+|
T Consensus 80 ~vrKK~---tf~Rdk~e~d~--------~~~ei-hG-Ni~--d~efkl~dg--~~~~aeVsKkw-----f~~rdTY~l~v 137 (159)
T COG4894 80 EVRKKV---TFSRDKFEIDG--------LNWEI-HG-NIW--DDEFKLTDG--ENVRAEVSKKW-----FSWRDTYHLQV 137 (159)
T ss_pred EEEEEE---EEEeeeEEEcC--------CCeEE-ec-cee--ceEEEEecC--Cceehhheeee-----EeccceEEEEE
Confidence 888875 55677776643 35999 99 999 999999998 78999999998 78999999999
Q ss_pred eCCCCHHHHHHHHHHHHhhhhc
Q 027044 188 HPNVDYAFIVALIVILDEINRA 209 (229)
Q Consensus 188 ~pgvD~ali~alvi~lD~~~~~ 209 (229)
+|+.|..+|+++|||||+|.++
T Consensus 138 apde~a~lii~i~VaLD~v~~~ 159 (159)
T COG4894 138 APDEDALLIIAIAVALDMVLYN 159 (159)
T ss_pred cCchhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999763
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.66 E-value=2.5e-14 Score=121.93 Aligned_cols=168 Identities=18% Similarity=0.254 Sum_probs=131.2
Q ss_pred eEEEEEEeeeee-------cCCCeEEEcCCCCEEEEEEecCC---------cccceEEEEcCCCCcEEEEEecccc----
Q 027044 28 IDLAIVRKVMIS-------SSGGFDVKDTNGNILFKVKDVFA---------FMHRRRVLLDGAGNPIVTLREKAMS---- 87 (229)
Q Consensus 28 ~~l~vk~k~~s~-------s~~~f~V~D~~G~~vf~V~g~~~---------s~~~k~~l~D~~G~pL~~i~~k~~s---- 87 (229)
-.+.|+|+...+ ..+.|.|+|.+|+++|.+....- ..+-++.|+|..|+++++|+|+.--
T Consensus 22 ~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~ 101 (221)
T PF03803_consen 22 DQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCC 101 (221)
T ss_pred CEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceecc
Confidence 467777777653 35899999999999999876531 1234678999999999999986421
Q ss_pred --ccceEEEEEcCCCcccceEEEEEecccccccCCceEEEEEcCCCCCceeeEEEeecCCcC----cCCCeeEEEeCCCC
Q 027044 88 --RHHRWQVFRGESTERRHLIFSAKRSRSGWFSSTTKLDVFLANNTREDVCDFRVVEGSSWL----FEPSSCTIYAGKSS 161 (229)
Q Consensus 88 --~~~~w~v~~g~~~~~~~~l~~vkk~~~~~~~~k~~~~v~~~~~~~~~~~~~~v~~G~~~~----~~~~~~~I~~~~~g 161 (229)
...+.+|+.+. +.+|.+++++. ..++++++|+.+++ ...+.| +| .+. +.+++|+|++.. |
T Consensus 102 ~~~~~~~~V~~p~----g~~iG~I~q~~---~~~~~~f~I~d~~~----~~~~~I-~g-p~~~~~~~~~~~F~I~~~~-~ 167 (221)
T PF03803_consen 102 PCCLQEMEVESPP----GNLIGSIRQPF---SCCRPNFDIFDANG----NPIFTI-KG-PCCCCSCCCDWEFEIKDPN-G 167 (221)
T ss_pred cccceeEEEecCC----CcEEEEEEEcC---cccceEEEEEECCC----ceEEEE-eC-Ccceeccccceeeeeeccc-C
Confidence 13567776655 58899999764 66899999987664 357899 88 522 128999999953 6
Q ss_pred ceEEEEEeeee--eeeeeeeceeEEEEEeCCCCH---HHHHHHHHHHHhhhhc
Q 027044 162 AIVAQMHEKQT--VKSIFLGKDNFMVTVHPNVDY---AFIVALIVILDEINRA 209 (229)
Q Consensus 162 ~~VA~V~rk~~--~~~~~~g~dtY~l~V~pgvD~---ali~alvi~lD~~~~~ 209 (229)
+.||+|+|+|. .++.+...|+|.|+..+..|. |+++|.++.||.++-+
T Consensus 168 ~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe 220 (221)
T PF03803_consen 168 QEVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE 220 (221)
T ss_pred cEEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence 99999999997 345788899999999999886 5899999999998754
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.1e-07 Score=75.68 Aligned_cols=103 Identities=15% Similarity=0.279 Sum_probs=82.2
Q ss_pred ccCCCCeEEEEEEeeeeecCCCeEEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEEEEeccccccceEEEEEcC---
Q 027044 22 YCSPHPIDLAIVRKVMISSSGGFDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVTLREKAMSRHHRWQVFRGE--- 98 (229)
Q Consensus 22 ~~~~~~~~l~vk~k~~s~s~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~k~~s~~~~w~v~~g~--- 98 (229)
|-...+..+.|+-+.++. +|.|+|+|+.|.+++.++.+..++..+..|-|++|+ ++.+++|...++++|++-.-+
T Consensus 24 ~d~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d~~~~ei 101 (159)
T COG4894 24 YDRDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEIDGLNWEI 101 (159)
T ss_pred ECCCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEcCCCeEE
Confidence 446789999999999999 889999999999999999999999999999999999 888999887778888873211
Q ss_pred -C---------CcccceEEEEEecccccccCCceEEEEEcC
Q 027044 99 -S---------TERRHLIFSAKRSRSGWFSSTTKLDVFLAN 129 (229)
Q Consensus 99 -~---------~~~~~~l~~vkk~~~~~~~~k~~~~v~~~~ 129 (229)
+ .+.++..++++|+ |+.++..+.+.++.
T Consensus 102 hGNi~d~efkl~dg~~~~aeVsKk---wf~~rdTY~l~vap 139 (159)
T COG4894 102 HGNIWDDEFKLTDGENVRAEVSKK---WFSWRDTYHLQVAP 139 (159)
T ss_pred ecceeceEEEEecCCceehhheee---eEeccceEEEEEcC
Confidence 0 1123456677654 56677777777654
No 5
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=98.23 E-value=3e-05 Score=69.04 Aligned_cols=161 Identities=15% Similarity=0.210 Sum_probs=108.3
Q ss_pred cCCCeEEEcCCCCEEEEEEecCC---------cccceEEEEcCCCCcEEEEEeccccccc--------eEEEEEcCCCcc
Q 027044 40 SSGGFDVKDTNGNILFKVKDVFA---------FMHRRRVLLDGAGNPIVTLREKAMSRHH--------RWQVFRGESTER 102 (229)
Q Consensus 40 s~~~f~V~D~~G~~vf~V~g~~~---------s~~~k~~l~D~~G~pL~~i~~k~~s~~~--------~w~v~~g~~~~~ 102 (229)
+.+.|.|.|.+|+.+|.+-...- .-+-...|+|.-|+++++++|++.-... ..++-.+ .
T Consensus 97 t~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p----~ 172 (292)
T KOG0621|consen 97 TANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSP----P 172 (292)
T ss_pred cCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcC----C
Confidence 58899999999999986554321 1244788999999999999997533221 1112111 1
Q ss_pred cceEEEEEecccccccCCceEEEEEcCCCCCceeeEEEeecCCcC----cCCCeeEEEeCCCCceEEEEEeeee--eeee
Q 027044 103 RHLIFSAKRSRSGWFSSTTKLDVFLANNTREDVCDFRVVEGSSWL----FEPSSCTIYAGKSSAIVAQMHEKQT--VKSI 176 (229)
Q Consensus 103 ~~~l~~vkk~~~~~~~~k~~~~v~~~~~~~~~~~~~~v~~G~~~~----~~~~~~~I~~~~~g~~VA~V~rk~~--~~~~ 176 (229)
.-.+-.+.+. +..+.++++|.-.. ....+.| +|..++ +++..|.|...+.++.|++|.|+|. ..+.
T Consensus 173 ~~~lG~v~q~---~~~~~~~f~i~~~~----~~~v~~v-~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~ 244 (292)
T KOG0621|consen 173 MGLLGKVLQT---WGCVNPNFHLWDRD----GNLVFLV-EGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREA 244 (292)
T ss_pred CceEEEEEEe---eccccceEEEEccc----ceeEEEE-EcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhh
Confidence 2334444433 23456777775422 1234666 662121 1155566665555899999999997 4578
Q ss_pred eeeceeEEEEEeCCCCH---HHHHHHHHHHHhhhhccCC
Q 027044 177 FLGKDNFMVTVHPNVDY---AFIVALIVILDEINRAHSS 212 (229)
Q Consensus 177 ~~g~dtY~l~V~pgvD~---ali~alvi~lD~~~~~~~~ 212 (229)
+.+.|+|.|.-.-..|. ++++|.+.-||.+.-+.+.
T Consensus 245 fTDad~f~v~FPldLdvk~kavllga~flID~~~Fe~~~ 283 (292)
T KOG0621|consen 245 FTDADTFVVHFPLDLDVKLKALLLGSTFLIDYMSFESRG 283 (292)
T ss_pred eeccceeeEecCCcCCHHHHhhhhhheeeEEEEEEecCC
Confidence 89999999998887776 5799999999999888875
No 6
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=97.93 E-value=7.6e-05 Score=62.15 Aligned_cols=86 Identities=16% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCCEEEEEEecCC-cccceEEEEcCCCCcEEEEEe-ccccccceEEEEEcCCCcccceEEEEEecccccccCCceEEEEE
Q 027044 50 NGNILFKVKDVFA-FMHRRRVLLDGAGNPIVTLRE-KAMSRHHRWQVFRGESTERRHLIFSAKRSRSGWFSSTTKLDVFL 127 (229)
Q Consensus 50 ~G~~vf~V~g~~~-s~~~k~~l~D~~G~pL~~i~~-k~~s~~~~w~v~~g~~~~~~~~l~~vkk~~~~~~~~k~~~~v~~ 127 (229)
.....++|.-+.+ ..++...|+|.+|+++|++.. +.+++..+..++++. +++|++++++. +.++++++++.
T Consensus 11 ~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~----G~~L~~i~~k~---~~l~~~w~i~~ 83 (187)
T PF04525_consen 11 PQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDAS----GNPLFTIRRKL---FSLRPTWEIYR 83 (187)
T ss_dssp SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TT----S-EEEEEE-----------EEEEEE
T ss_pred CCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCC----CCEEEEEEeee---cccceEEEEEE
Confidence 4667888855554 457899999999999999999 899999999999976 58999999864 66889999998
Q ss_pred cCCCCCceeeEEEeec
Q 027044 128 ANNTREDVCDFRVVEG 143 (229)
Q Consensus 128 ~~~~~~~~~~~~v~~G 143 (229)
.+..+++.+-++| +-
T Consensus 84 ~~~~~~~~~i~tv-kk 98 (187)
T PF04525_consen 84 GGGSEGKKPIFTV-KK 98 (187)
T ss_dssp TT---GGGEEEEE-E-
T ss_pred CCCCccCceEEEE-EE
Confidence 8765444567888 44
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=96.11 E-value=0.067 Score=45.33 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=50.6
Q ss_pred eEEEcCCCCEEEEEEecCCc------ccceEEEEcCCCCcEEEEEeccccccceEEEEEcCCCcccceEEEEEecc
Q 027044 44 FDVKDTNGNILFKVKDVFAF------MHRRRVLLDGAGNPIVTLREKAMSRHHRWQVFRGESTERRHLIFSAKRSR 113 (229)
Q Consensus 44 f~V~D~~G~~vf~V~g~~~s------~~~k~~l~D~~G~pL~~i~~k~~s~~~~w~v~~g~~~~~~~~l~~vkk~~ 113 (229)
..|+|.+|+.+++++-...- ...+..+.+++|++|.+|+++...+.++|+|++.+ ++++++++-..
T Consensus 78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~----~~~~~~I~gp~ 149 (221)
T PF03803_consen 78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDAN----GNPIFTIKGPC 149 (221)
T ss_pred EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECC----CceEEEEeCCc
Confidence 36789999999998865321 23577788899999999998766678889999887 36788887653
No 8
>COG4907 Predicted membrane protein [Function unknown]
Probab=89.79 E-value=0.21 Score=47.16 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=7.7
Q ss_pred eeceeEEEEEeCCCCHHH
Q 027044 178 LGKDNFMVTVHPNVDYAF 195 (229)
Q Consensus 178 ~g~dtY~l~V~pgvD~al 195 (229)
.|.+=+.-..+=||-.-.
T Consensus 511 ~W~~ylVYatALGV~dkV 528 (595)
T COG4907 511 LWEQYLVYATALGVSDKV 528 (595)
T ss_pred hHhhhhhhhhhhccHHHH
Confidence 344433333455554433
No 9
>COG4907 Predicted membrane protein [Function unknown]
Probab=84.55 E-value=0.59 Score=44.25 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=4.5
Q ss_pred ceeEEEEEeCC
Q 027044 180 KDNFMVTVHPN 190 (229)
Q Consensus 180 ~dtY~l~V~pg 190 (229)
+|+|..-+.-.
T Consensus 542 kds~~~i~h~n 552 (595)
T COG4907 542 KDSYSPIFHNN 552 (595)
T ss_pred cccceeEEecc
Confidence 33444444433
No 10
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=63.51 E-value=53 Score=29.55 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=36.0
Q ss_pred CCCeEEEcCCCCEEEEEEecCC------cccceEEEEcCCCCcEEEEEecccc
Q 027044 41 SGGFDVKDTNGNILFKVKDVFA------FMHRRRVLLDGAGNPIVTLREKAMS 87 (229)
Q Consensus 41 ~~~f~V~D~~G~~vf~V~g~~~------s~~~k~~l~D~~G~pL~~i~~k~~s 87 (229)
...|.|.|..++.+|+|+|... +......++.-+|..+..|-||...
T Consensus 187 ~~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g 239 (292)
T KOG0621|consen 187 NPNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAG 239 (292)
T ss_pred cceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccc
Confidence 4589999988999999999722 3455677788888989999887533
No 11
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=59.99 E-value=12 Score=32.91 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=7.0
Q ss_pred eeEEEEEeCC
Q 027044 181 DNFMVTVHPN 190 (229)
Q Consensus 181 dtY~l~V~pg 190 (229)
.+|+|.|-|+
T Consensus 261 ~v~eiCvC~n 270 (292)
T KOG3950|consen 261 KVFEICVCPN 270 (292)
T ss_pred eEEEEEEecC
Confidence 3788877664
No 12
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=59.10 E-value=33 Score=30.30 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=26.0
Q ss_pred eEEEEEEee-eeecCCCeEEEcC-CCCEEEEEEecCCcc-cceEEEEcCCCC
Q 027044 28 IDLAIVRKV-MISSSGGFDVKDT-NGNILFKVKDVFAFM-HRRRVLLDGAGN 76 (229)
Q Consensus 28 ~~l~vk~k~-~s~s~~~f~V~D~-~G~~vf~V~g~~~s~-~~k~~l~D~~G~ 76 (229)
..|.+-+.. .-...+.|.|+|. +|+++|.++..-..+ ..++.+..+.|.
T Consensus 103 ~~l~v~~~~~v~~~~~~F~V~d~~~g~~lFsad~~~v~v~~~~lrv~~~~G~ 154 (264)
T PF04790_consen 103 SRLVVGPDGTVEAQSNRFEVKDPRDGKTLFSADRPEVVVGAEKLRVTGPEGA 154 (264)
T ss_pred ceEEECCCccEEEecCeEEEEcCCCCceEEEecCCceEEeeeeEEecCCccE
Confidence 455554433 3334566666666 666666666654332 234445555554
No 13
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=49.36 E-value=15 Score=23.19 Aligned_cols=13 Identities=0% Similarity=0.112 Sum_probs=5.1
Q ss_pred HHHhhhhccCCCC
Q 027044 202 ILDEINRAHSSSS 214 (229)
Q Consensus 202 ~lD~~~~~~~~~~ 214 (229)
++.-+....++-+
T Consensus 13 aissvs~~G~rC~ 25 (43)
T PF10917_consen 13 AISSVSGGGHRCR 25 (43)
T ss_pred hhhcccccccccC
Confidence 3443433344433
No 14
>PF08949 DUF1860: Domain of unknown function (DUF1860); InterPro: IPR015044 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the C terminus of bacteriophage spike proteins []. ; PDB: 1YQ8_A 1YQ5_A 1YQ6_B.
Probab=48.89 E-value=5.2 Score=32.53 Aligned_cols=10 Identities=100% Similarity=2.049 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 027044 216 SGGGGGGGGG 225 (229)
Q Consensus 216 s~~~~~~~~~ 225 (229)
+|||||||||
T Consensus 69 ~ggggggggg 78 (220)
T PF08949_consen 69 SGGGGGGGGG 78 (220)
T ss_dssp ----------
T ss_pred ecCCCCCccc
Confidence 4555554443
No 15
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=48.75 E-value=37 Score=23.97 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=9.4
Q ss_pred eEEEEcCCCCcEEEEE
Q 027044 67 RRVLLDGAGNPIVTLR 82 (229)
Q Consensus 67 k~~l~D~~G~pL~~i~ 82 (229)
++.|+|.+|+.|.++.
T Consensus 28 ~v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTIS 43 (81)
T ss_dssp EEEEEETTS-EEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 5666666666666654
No 16
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=46.37 E-value=87 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=16.5
Q ss_pred ceEEEEcCCCCcEEEEEeccc
Q 027044 66 RRRVLLDGAGNPIVTLREKAM 86 (229)
Q Consensus 66 ~k~~l~D~~G~pL~~i~~k~~ 86 (229)
.+..++|.+|...+.|.++.|
T Consensus 73 d~Y~F~D~TG~I~VeId~~~w 93 (126)
T TIGR00156 73 DRYVFRDKSGEINVVIPAAVW 93 (126)
T ss_pred ceEEEECCCCCEEEEECHHHc
Confidence 467888888888888887754
No 17
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=44.52 E-value=2.1e+02 Score=24.83 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=36.0
Q ss_pred ccceEEEEEcCCCcccceEEEEEecccccccCCceEEEEEcCCC---CCceeeEEEeecCCcCcCCCeeEEEeC
Q 027044 88 RHHRWQVFRGESTERRHLIFSAKRSRSGWFSSTTKLDVFLANNT---REDVCDFRVVEGSSWLFEPSSCTIYAG 158 (229)
Q Consensus 88 ~~~~w~v~~g~~~~~~~~l~~vkk~~~~~~~~k~~~~v~~~~~~---~~~~~~~~v~~G~~~~~~~~~~~I~~~ 158 (229)
+.+.|..|..+. .++.|..+||.. ....+.+.|++.... .+...-=.| +. ||+ +..|.|||.
T Consensus 23 lyp~y~l~l~~~--~~kfLLaArK~~---~s~~s~YiIS~~~~dlsr~s~~yvGKL-rs-Nf~--GT~F~iyD~ 87 (246)
T PF01167_consen 23 LYPGYYLYLEGE--NGKFLLAARKRK---RSKTSNYIISLDPDDLSRSSNNYVGKL-RS-NFL--GTEFTIYDN 87 (246)
T ss_dssp ---EEEEEEEST--TSEEEEEEEEEC---SSSSEEEEEESSHHHHCTT---ESEEE-EE--TT--SSEEEEEES
T ss_pred cCcEeEeccccC--CCcEEEeeeecc---cCCCcceEEecCCCccccCCCceeeee-cc-ccc--eeEEEEECC
Confidence 567888887531 246677777653 234567888764321 112233567 88 999 999999996
No 18
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=44.50 E-value=27 Score=31.73 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=12.6
Q ss_pred eEEEeecCCcCcCCCeeEEEeC
Q 027044 137 DFRVVEGSSWLFEPSSCTIYAG 158 (229)
Q Consensus 137 ~~~v~~G~~~~~~~~~~~I~~~ 158 (229)
.|.| +| +. ..+|++...
T Consensus 109 pyvL-kG-SC---gleY~L~lt 125 (318)
T PF06682_consen 109 PYVL-KG-SC---GLEYRLELT 125 (318)
T ss_pred ceec-CC-cc---ceEEEEEec
Confidence 5999 99 43 588888754
No 19
>PF14086 DUF4266: Domain of unknown function (DUF4266)
Probab=44.41 E-value=16 Score=24.05 Aligned_cols=10 Identities=80% Similarity=1.591 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 027044 216 SGGGGGGGGG 225 (229)
Q Consensus 216 s~~~~~~~~~ 225 (229)
+||+|.+|||
T Consensus 37 ~gg~g~~GGG 46 (50)
T PF14086_consen 37 SGGGGKAGGG 46 (50)
T ss_pred cCCCCCCCcC
Confidence 4444444433
No 20
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=39.80 E-value=47 Score=25.52 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=30.3
Q ss_pred ccCCCCeEEEEEEeeeeecCCCeEEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEEEEe
Q 027044 22 YCSPHPIDLAIVRKVMISSSGGFDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVTLRE 83 (229)
Q Consensus 22 ~~~~~~~~l~vk~k~~s~s~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~ 83 (229)
|...+.-.+..-..-+.++..+|.+++.+ ....|....+ .+.++|++|..+|.+-.
T Consensus 50 yl~ne~G~~~~i~QPi~iN~gg~~~y~gq--~a~~vt~~~h----SMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 50 YLENEDGSHVQIAQPIIINKGGFPVYNGQ--IAKFVTVPGH----SMAVYDANGQQQFYFPN 105 (114)
T ss_dssp EEE-TTS-EEEE-SSEEE-TTS-EEETTE--E--EEESSSE----EEEEE-TTS-EEEEESE
T ss_pred EEEcCCCCEeeccCCEEEccCCceEEccc--eeEEEEccCc----eEEEEeCCCcEEEeecc
Confidence 44444444444455667777889998644 5555555433 46889999999988754
No 21
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=39.61 E-value=6.2 Score=28.61 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=19.0
Q ss_pred CeEEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEE
Q 027044 43 GFDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIV 79 (229)
Q Consensus 43 ~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~ 79 (229)
=|-|+|.+|..+..-....+-..+-..+.|++|++++
T Consensus 58 Y~fi~d~~g~~l~hp~~p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 58 YFFIYDMDGVVLAHPSNPELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp --EEE-TTSBEEEESS-GGGTT-B-TT-B-TT--BHH
T ss_pred eEEEEeCCCeEEEcCCCcccCCcccccCCCCCCCEEe
Confidence 4778888888877755444444556678899998865
No 22
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=38.94 E-value=49 Score=27.28 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=8.4
Q ss_pred CCCeEEEcCCCCE-EEEEEe
Q 027044 41 SGGFDVKDTNGNI-LFKVKD 59 (229)
Q Consensus 41 ~~~f~V~D~~G~~-vf~V~g 59 (229)
+|.+.|.+.+|+. .|+|..
T Consensus 112 GD~I~v~~~~g~~~~Y~V~~ 131 (174)
T TIGR03784 112 GDVIRLQTPDGQWQSYQVTA 131 (174)
T ss_pred CCEEEEEECCCeEEEEEEeE
Confidence 4444444444442 344444
No 23
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=38.50 E-value=65 Score=25.57 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=36.0
Q ss_pred eEEEcCCCCEEEEEEecCCcc-------cceEEEEcCCCCcEEEEEec-cccccceEEEE
Q 027044 44 FDVKDTNGNILFKVKDVFAFM-------HRRRVLLDGAGNPIVTLREK-AMSRHHRWQVF 95 (229)
Q Consensus 44 f~V~D~~G~~vf~V~g~~~s~-------~~k~~l~D~~G~pL~~i~~k-~~s~~~~w~v~ 95 (229)
+.|+|++|+++-++.-+.... .--..|.|.+|+.|+.-|.. ...+...|++.
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~ 60 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNS 60 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCcccc
Confidence 368999999999987655432 22467789999988864433 23566778864
No 24
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=37.21 E-value=63 Score=24.37 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=10.9
Q ss_pred ceEEEEcCCCCcEEEEEeccc
Q 027044 66 RRRVLLDGAGNPIVTLREKAM 86 (229)
Q Consensus 66 ~k~~l~D~~G~pL~~i~~k~~ 86 (229)
.+..|.|.+|...+.|-++.|
T Consensus 50 d~Y~F~D~TG~I~VeId~~~w 70 (103)
T PF04076_consen 50 DKYLFRDATGEIEVEIDDDVW 70 (103)
T ss_dssp TEEEEEETTEEEEEE--GGGS
T ss_pred CEEEEECCCCcEEEEEChhhc
Confidence 455566666666666655543
No 25
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=36.95 E-value=24 Score=29.87 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.6
Q ss_pred eEEEEE
Q 027044 182 NFMVTV 187 (229)
Q Consensus 182 tY~l~V 187 (229)
-|+|.|
T Consensus 72 g~rLRV 77 (241)
T KOG0105|consen 72 GCRLRV 77 (241)
T ss_pred cceEEE
Confidence 344444
No 26
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=35.81 E-value=1.8e+02 Score=21.45 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCcEEEEEeccccccceEEEEEcC
Q 027044 65 HRRRVLLDGAGNPIVTLREKAMSRHHRWQVFRGE 98 (229)
Q Consensus 65 ~~k~~l~D~~G~pL~~i~~k~~s~~~~w~v~~g~ 98 (229)
++.+.|+|++|+.|..+.+.. -..|+....+
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~---~g~~~g~~~~ 91 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSG---DGRFEGQTPD 91 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEEC---TTEEEEEECC
T ss_pred CCEEEEECCCCCEEEEEEccC---CeeEEeEcCC
Confidence 468999999999999987742 2367777765
No 27
>PF15529 Toxin_49: Putative toxin 49
Probab=35.19 E-value=39 Score=24.96 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.0
Q ss_pred CCeEEEcCCCCEEEEEEe
Q 027044 42 GGFDVKDTNGNILFKVKD 59 (229)
Q Consensus 42 ~~f~V~D~~G~~vf~V~g 59 (229)
-+|+++|++|.++-++++
T Consensus 30 t~Y~tY~~~G~~~kr~r~ 47 (89)
T PF15529_consen 30 TSYTTYDEDGMIVKRYRG 47 (89)
T ss_pred cceeEEcCCCcEeEEeec
Confidence 499999999995555554
No 28
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=34.70 E-value=94 Score=25.34 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCeEEEcCCCCEEEEEEe------cCCcccceEEEEcCCCCcEEEEEeccc-cccceEEEEEcC
Q 027044 42 GGFDVKDTNGNILFKVKD------VFAFMHRRRVLLDGAGNPIVTLREKAM-SRHHRWQVFRGE 98 (229)
Q Consensus 42 ~~f~V~D~~G~~vf~V~g------~~~s~~~k~~l~D~~G~pL~~i~~k~~-s~~~~w~v~~g~ 98 (229)
.=++|+|++++++-.+.- +.....-...|+|.+|+.|+.=|...- .+...|..+-|+
T Consensus 10 e~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 10 EWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGG 73 (180)
T ss_pred eEEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCC
Confidence 347899999999998721 122333456778988988874222211 123446655444
No 29
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=33.81 E-value=63 Score=24.76 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=12.4
Q ss_pred CCCeEEEcCCCCEEEEEEec
Q 027044 41 SGGFDVKDTNGNILFKVKDV 60 (229)
Q Consensus 41 ~~~f~V~D~~G~~vf~V~g~ 60 (229)
+|.+.|.|..+...|+|...
T Consensus 68 Gd~v~v~~~~~~~~Y~V~~~ 87 (126)
T cd06166 68 GDEIKVTTKNGTYKYKITSI 87 (126)
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 56666666666666666653
No 30
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=33.26 E-value=62 Score=24.86 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=9.7
Q ss_pred CCCeEEEcCCCCEEEEEEec
Q 027044 41 SGGFDVKDTNGNILFKVKDV 60 (229)
Q Consensus 41 ~~~f~V~D~~G~~vf~V~g~ 60 (229)
+|.+.|.+..+...|+|...
T Consensus 65 Gd~i~v~~~~~~~~Y~V~~~ 84 (127)
T cd05828 65 GDIITLQTLGGTYTYRVTST 84 (127)
T ss_pred CCEEEEEECCEEEEEEEeeE
Confidence 44444555444455555443
No 31
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=32.51 E-value=83 Score=26.09 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCeeEEEeCCCCceEEEEEeeeeeeeeeeeceeEEEEEeCCC
Q 027044 150 PSSCTIYAGKSSAIVAQMHEKQTVKSIFLGKDNFMVTVHPNV 191 (229)
Q Consensus 150 ~~~~~I~~~~~g~~VA~V~rk~~~~~~~~g~dtY~l~V~pgv 191 (229)
.++|.|.++ |..|+||.--- -.+..+|.|+|..|.
T Consensus 22 Arn~~ve~e--gveVgEiDIVA-----ek~GerYavEVKAG~ 56 (209)
T COG4998 22 ARNMPVEDE--GVEVGEIDIVA-----EKGGERYAVEVKAGM 56 (209)
T ss_pred eecceeecC--CeEEEEEEEEE-----ecCCcEEEEEEeccc
Confidence 688999988 89999997542 246889999999984
No 32
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=31.72 E-value=2.9e+02 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=22.8
Q ss_pred eeEEEe--ecCCcCcCCCeeEEEeCCCCceEEEEEeeee
Q 027044 136 CDFRVV--EGSSWLFEPSSCTIYAGKSSAIVAQMHEKQT 172 (229)
Q Consensus 136 ~~~~v~--~G~~~~~~~~~~~I~~~~~g~~VA~V~rk~~ 172 (229)
.+++|+ +| +- -.+|.+..+ |++|++-.|++-
T Consensus 175 ~~l~v~GKRG-~v---~L~F~l~~~--g~~VG~G~K~lv 207 (218)
T PF12119_consen 175 ATLEVDGKRG-DV---TLNFELKEG--GEVVGTGSKRLV 207 (218)
T ss_pred ceeEeeccee-eE---EEEEEEeEC--CEEEeeEEEEEE
Confidence 468883 34 32 357888888 999999999974
No 33
>KOG3590 consensus Protein kinase A anchoring protein [Signal transduction mechanisms]
Probab=31.70 E-value=38 Score=32.14 Aligned_cols=29 Identities=21% Similarity=0.006 Sum_probs=14.1
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCCCCCC
Q 027044 199 LIVILDEINRAHSSSSSSGGGGGGGGGAG 227 (229)
Q Consensus 199 lvi~lD~~~~~~~~~~~s~~~~~~~~~~~ 227 (229)
.|+++.....++..=.++++++++++|++
T Consensus 57 ~~~av~~~~a~~ds~~~~~~~~~~~~~s~ 85 (602)
T KOG3590|consen 57 SHVAINAISANMDSFSSSRTATLKKQPSH 85 (602)
T ss_pred chHHHhhccccccccccCCccccCCCCCC
Confidence 35555555555444344555544444443
No 34
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=29.87 E-value=1.5e+02 Score=23.00 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCEEEEEEecC
Q 027044 40 SSGGFDVKDTNGNILFKVKDVF 61 (229)
Q Consensus 40 s~~~f~V~D~~G~~vf~V~g~~ 61 (229)
.+|.+.|+|.++...|+|....
T Consensus 68 ~Gd~i~v~~~~~~~~Y~V~~~~ 89 (137)
T cd05830 68 PGDKIVVETADGWYTYVVRSSE 89 (137)
T ss_pred CCCEEEEEECCeEEEEEEeEEE
Confidence 3677777777777778877753
No 35
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=29.72 E-value=18 Score=29.97 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=0.0
Q ss_pred cCCccCCCCeEEEEEEeeeeecCCCeEEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEEEEeccccccc
Q 027044 19 SPQYCSPHPIDLAIVRKVMISSSGGFDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVTLREKAMSRHH 90 (229)
Q Consensus 19 ~~~~~~~~~~~l~vk~k~~s~s~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~k~~s~~~ 90 (229)
+|=|...+.+.-.||.|---. .+.|.+ +|-=....++.+..+..+|.-|+||++++.|.+.+.+
T Consensus 95 RPIY~nE~dvk~~IksKenk~-NEAYVa-------iyInq~dIl~~~~dk~~~Dk~GkpLltLkdrai~leN 158 (179)
T PF09475_consen 95 RPIYANEEDVKAAIKSKENKL-NEAYVA-------IYINQSDILSLSPDKIPTDKLGKPLLTLKDRAINLEN 158 (179)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCCcCCHHHHHHHHHhhhccc-ceeEEE-------EEEchHhcccCCcccccccccCCcccccchhhcchhh
Confidence 344444445555555553333 223322 2222233456777889999999999999998766543
No 36
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=28.44 E-value=64 Score=25.62 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=24.5
Q ss_pred EEEEecCC--cccceEEEEcCCCCcEEEEEeccccccc
Q 027044 55 FKVKDVFA--FMHRRRVLLDGAGNPIVTLREKAMSRHH 90 (229)
Q Consensus 55 f~V~g~~~--s~~~k~~l~D~~G~pL~~i~~k~~s~~~ 90 (229)
||++|..- ++--...|+|.+|+.+++-..+.++-.|
T Consensus 36 yr~~G~D~Ygsfl~~i~l~d~~g~vv~~~~~~~L~~lP 73 (133)
T PF07680_consen 36 YRVEGPDVYGSFLIGIQLKDSTGHVVLNWDQEKLSSLP 73 (133)
T ss_pred EEcCCCccCCceeeEEEEECCCCCEEEEeCHHHhhhCC
Confidence 34444332 4445899999999999998876655433
No 37
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.79 E-value=38 Score=32.23 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=36.6
Q ss_pred CeEEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEEEEe
Q 027044 43 GFDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVTLRE 83 (229)
Q Consensus 43 ~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~ 83 (229)
+||=.|..-+.|++-.|+.+|.-+++.|.|.+|+||..=..
T Consensus 345 nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~ 385 (542)
T COG1021 345 NYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEV 385 (542)
T ss_pred cccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCc
Confidence 78889999999999999999999999999999999875333
No 38
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=26.55 E-value=1.5e+02 Score=21.22 Aligned_cols=12 Identities=50% Similarity=0.775 Sum_probs=4.6
Q ss_pred eEEEEcCCCCcE
Q 027044 67 RRVLLDGAGNPI 78 (229)
Q Consensus 67 k~~l~D~~G~pL 78 (229)
.+.++|.+|+|+
T Consensus 72 ~L~~Ld~~G~~i 83 (87)
T PF04170_consen 72 SLEMLDQDGNPI 83 (87)
T ss_dssp EEEEE-TTS-B-
T ss_pred EEEEECCCCCcC
Confidence 445555555544
No 39
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=25.43 E-value=2e+02 Score=25.07 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=39.4
Q ss_pred CCCeEEEcCCCCEEEEEEecCC------------cccceEEEEcCCCCcEEEEEec-cccccceEEEEEc
Q 027044 41 SGGFDVKDTNGNILFKVKDVFA------------FMHRRRVLLDGAGNPIVTLREK-AMSRHHRWQVFRG 97 (229)
Q Consensus 41 ~~~f~V~D~~G~~vf~V~g~~~------------s~~~k~~l~D~~G~pL~~i~~k-~~s~~~~w~v~~g 97 (229)
.+...|.|++++++.++.-+.. +..-...|.|.+|+.|++-|.. ...+...|+..-+
T Consensus 22 ~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~ 91 (247)
T PLN02552 22 EDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCC 91 (247)
T ss_pred cCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccC
Confidence 4678899999999998864321 2223467789999988887754 3345667876643
No 40
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=25.23 E-value=74 Score=27.95 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=31.5
Q ss_pred eeeecCCCe-EEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEE
Q 027044 36 VMISSSGGF-DVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVT 80 (229)
Q Consensus 36 ~~s~s~~~f-~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~ 80 (229)
-+.+.++.| .|.+.+|..+|+=+|. |++...-.|.+++|.+|+.
T Consensus 94 DlAI~G~GFF~V~~~~G~~~YTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 94 DVAIEGEGFFKILMPDGTYAYTRDGS-FKIDANGQLVTSNGYRLLP 138 (264)
T ss_pred eEEECCCcEEEEEcCCCCeEEeeCCC-eeECCCCCEECCCCCEecc
Confidence 334455555 7777888888887765 5555566789999999985
No 41
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=25.00 E-value=1.2e+02 Score=23.68 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCEEEEEEecCCcc--------cceEEEEcCCCCcEEE
Q 027044 50 NGNILFKVKDVFAFM--------HRRRVLLDGAGNPIVT 80 (229)
Q Consensus 50 ~G~~vf~V~g~~~s~--------~~k~~l~D~~G~pL~~ 80 (229)
++..+++|++..... .=++.|+|.+|++|++
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~ 103 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLAR 103 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEE
Confidence 688889998876432 2379999999999974
No 42
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=25.00 E-value=1.3e+02 Score=26.22 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=12.7
Q ss_pred CEEEEEEecCCcccceEEEEcCCCCc
Q 027044 52 NILFKVKDVFAFMHRRRVLLDGAGNP 77 (229)
Q Consensus 52 ~~vf~V~g~~~s~~~k~~l~D~~G~p 77 (229)
+..|+-.|+.-....+++|.|.+|..
T Consensus 82 ~~~f~~~G~w~~~~~~i~L~~~~g~~ 107 (234)
T PRK10523 82 PSSFASYGTWARTADKLVLTDSKGEK 107 (234)
T ss_pred CCceEeeEEEEecCCEEEEecCCCCE
Confidence 44555555422223455555655554
No 43
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=24.75 E-value=2e+02 Score=19.80 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=26.5
Q ss_pred EEEcCCCCEEEEEEecCC------cccceEEEEcCCCCcEEEEEe
Q 027044 45 DVKDTNGNILFKVKDVFA------FMHRRRVLLDGAGNPIVTLRE 83 (229)
Q Consensus 45 ~V~D~~G~~vf~V~g~~~------s~~~k~~l~D~~G~pL~~i~~ 83 (229)
.|.|.+|+++-+|..-.. ..-.+=.|.|.+|+.|-....
T Consensus 14 ~V~d~~G~~vG~vveGd~k~L~G~~vd~~G~I~d~~G~viGkae~ 58 (64)
T PF12396_consen 14 NVVDDDGNVVGRVVEGDPKKLVGKKVDEDGDILDKDGNVIGKAEP 58 (64)
T ss_pred eEECCCCCEEEEEecCCHHHhcCCcCCCCCCEECCCCCEEEEEEe
Confidence 688999999999554332 122345678888888876543
No 44
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=24.42 E-value=53 Score=23.57 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=8.9
Q ss_pred CeEEEcCCCCEEEEE
Q 027044 43 GFDVKDTNGNILFKV 57 (229)
Q Consensus 43 ~f~V~D~~G~~vf~V 57 (229)
||.|+|.+|+.|++=
T Consensus 27 D~~v~d~~g~~vwrw 41 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRW 41 (82)
T ss_dssp EEEEE-TT--EEEET
T ss_pred EEEEECCCCCEEEEe
Confidence 677888888888764
No 45
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=24.34 E-value=1.8e+02 Score=20.68 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=5.6
Q ss_pred EEEEcCCCCcEE
Q 027044 68 RVLLDGAGNPIV 79 (229)
Q Consensus 68 ~~l~D~~G~pL~ 79 (229)
..+.|.+|+|+-
T Consensus 24 v~v~D~~Gnpv~ 35 (92)
T smart00634 24 ATVTDANGNPVA 35 (92)
T ss_pred EEEECCCCCCcC
Confidence 344455554443
No 46
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=23.20 E-value=2e+02 Score=23.23 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=7.4
Q ss_pred EEEcCCCCcEEEEEe
Q 027044 69 VLLDGAGNPIVTLRE 83 (229)
Q Consensus 69 ~l~D~~G~pL~~i~~ 83 (229)
.+.|.+|+.|-+|..
T Consensus 109 ~V~d~~g~~lG~V~~ 123 (172)
T PRK00122 109 EVVDEDGEELGKVTD 123 (172)
T ss_pred EEEeCCCcEEEEEEE
Confidence 334555555555544
No 47
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=22.43 E-value=1.8e+02 Score=23.37 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=9.7
Q ss_pred EEEEcCCCCcEEEEEe
Q 027044 68 RVLLDGAGNPIVTLRE 83 (229)
Q Consensus 68 ~~l~D~~G~pL~~i~~ 83 (229)
+.+.|.+|+.|-+|..
T Consensus 103 ~~V~d~~~~~lG~V~~ 118 (165)
T TIGR02273 103 LEVVTEEGEELGKVVE 118 (165)
T ss_pred cEEEcCCCcEEEEEEE
Confidence 4556666666666655
No 48
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.24 E-value=1.1e+02 Score=26.56 Aligned_cols=43 Identities=9% Similarity=0.254 Sum_probs=30.5
Q ss_pred eeecCCCe-EEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEE
Q 027044 37 MISSSGGF-DVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVT 80 (229)
Q Consensus 37 ~s~s~~~f-~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~ 80 (229)
+.+.++.| .|.+.+|+.+|+=+|. |.+...-.|.+++|.+|+.
T Consensus 95 lAI~G~GfF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 95 LAIQGRGYFQIQLPDGETAYTRAGA-FNRSADGQIVTSDGYPVQP 138 (262)
T ss_pred EEEcCCcEEEEEcCCCCEEEeeCCC-eeECCCCCEECCCCCEeEe
Confidence 33345554 6777788888987775 5555566789999999985
No 49
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=21.44 E-value=1.1e+02 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=8.7
Q ss_pred eEEEEcCCCCcEEEE
Q 027044 67 RRVLLDGAGNPIVTL 81 (229)
Q Consensus 67 k~~l~D~~G~pL~~i 81 (229)
++.|+|.+|+.|-++
T Consensus 127 ~v~I~D~~G~vV~t~ 141 (223)
T PRK12813 127 ELVVRDAAGAEVARE 141 (223)
T ss_pred EEEEEcCCCCEEEEE
Confidence 455666666666554
No 50
>PHA01399 membrane protein P6
Probab=20.76 E-value=53 Score=27.81 Aligned_cols=9 Identities=100% Similarity=1.708 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 027044 214 SSSGGGGGG 222 (229)
Q Consensus 214 ~~s~~~~~~ 222 (229)
+||||||||
T Consensus 205 sssg~~g~g 213 (242)
T PHA01399 205 SSSGGGGGG 213 (242)
T ss_pred ccCCCCCCC
Confidence 345554444
No 51
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=20.44 E-value=65 Score=30.26 Aligned_cols=12 Identities=17% Similarity=-0.078 Sum_probs=7.3
Q ss_pred ecCCCeEEEcCC
Q 027044 39 SSSGGFDVKDTN 50 (229)
Q Consensus 39 ~s~~~f~V~D~~ 50 (229)
++.-+|-|.||.
T Consensus 147 l~~v~~lViDEa 158 (456)
T PRK10590 147 LDQVEILVLDEA 158 (456)
T ss_pred cccceEEEeecH
Confidence 444467777763
No 52
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=20.41 E-value=97 Score=26.97 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=30.0
Q ss_pred eeecCCCe-EEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEE
Q 027044 37 MISSSGGF-DVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVT 80 (229)
Q Consensus 37 ~s~s~~~f-~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~ 80 (229)
+.+.++.| .|.+++|+.+|+=+|. |++-..-.|.+++|.+|+.
T Consensus 93 ~AI~G~GfF~V~~~~g~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 93 LAIEGEGFFQVLMPDGTTAYTRDGA-FKINAEGQLVTSNGYPLQP 136 (259)
T ss_pred EEEcCCcEEEEEcCCCCeEEeeCCc-eEECCCCCEECCCCCEecC
Confidence 33345555 6777788877886664 5555566788999999884
No 53
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=20.35 E-value=3.2e+02 Score=21.08 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=12.4
Q ss_pred CCCeEEEcCCCCEEEEEEec
Q 027044 41 SGGFDVKDTNGNILFKVKDV 60 (229)
Q Consensus 41 ~~~f~V~D~~G~~vf~V~g~ 60 (229)
+|.+.|.+.++...|+|...
T Consensus 67 GD~i~v~~~~~~~~Y~V~~~ 86 (136)
T TIGR01076 67 GDMLYLHVGNEVLTYQVTST 86 (136)
T ss_pred CCEEEEEECCcEEEEEEEEE
Confidence 55566666666666666654
No 54
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.30 E-value=1.5e+02 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred eEEEcCCCCEEEEEEecCCcccceEE---EEcCCCCcE
Q 027044 44 FDVKDTNGNILFKVKDVFAFMHRRRV---LLDGAGNPI 78 (229)
Q Consensus 44 f~V~D~~G~~vf~V~g~~~s~~~k~~---l~D~~G~pL 78 (229)
.+|+|++|++|.+++-....-+.... =+|.+|+++
T Consensus 130 i~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~l 167 (225)
T PRK06655 130 VTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNAL 167 (225)
T ss_pred EEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcC
No 55
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=20.22 E-value=2.5e+02 Score=22.57 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=6.0
Q ss_pred EcCCCCcEEEEEe
Q 027044 71 LDGAGNPIVTLRE 83 (229)
Q Consensus 71 ~D~~G~pL~~i~~ 83 (229)
.|.+|..|-+|..
T Consensus 91 ~d~~g~~lG~V~~ 103 (161)
T PRK13828 91 VDTGGALLGRVKA 103 (161)
T ss_pred EeCCCCEEEEEEE
Confidence 4444444444443
No 56
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=20.09 E-value=1e+02 Score=26.88 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=28.4
Q ss_pred eecCCC-eEEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEE
Q 027044 38 ISSSGG-FDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVT 80 (229)
Q Consensus 38 s~s~~~-f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~ 80 (229)
.+.++. |.|.+.+|+..|+=+|. |++-..-.|.+++|.+|+.
T Consensus 81 AI~G~GFF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 81 ALQGDGWLAVQAPDGSEAYTRNGS-LQVDANGQLRTANGLPVLG 123 (246)
T ss_pred EECCCcEEEEEcCCCCEEEEeCCC-eeECCCCCEEcCCCCCccC
Confidence 333433 56667788788886665 5555566688888888884
Done!