Query 027044
Match_columns 229
No_of_seqs 107 out of 489
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 3.6E-45 1.2E-49 310.6 21.8 202 5-212 15-216 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.2 7.7E-06 2.6E-10 68.5 9.8 99 24-128 59-162 (217)
3 3u88_M Histone-lysine N-methyl 82.4 0.67 2.3E-05 31.1 2.0 34 185-218 28-61 (75)
4 2lqh_B Forkhead box O3, FOXO3A 83.0 0.26 9E-06 30.4 0.0 19 209-227 17-35 (52)
5 3u6r_H Antibody 1:7 (heavy cha 62.2 1.6 5.5E-05 33.6 0.0 14 216-229 134-147 (149)
6 1p4b_L Antibody variable light 56.3 2.4 8E-05 31.8 0.0 14 215-228 119-132 (135)
7 3ng9_A Capsid protein; beta ba 50.8 4 0.00014 39.5 0.6 9 104-112 116-124 (736)
8 3c5n_A Tubby-related protein 1 36.7 1.8E+02 0.0062 24.1 11.3 90 88-187 30-135 (246)
9 2hh3_A KH-type splicing regula 35.2 31 0.0011 24.9 3.3 28 184-212 57-84 (106)
10 2fim_A Tubby related protein 1 33.3 2.2E+02 0.0076 24.0 11.7 103 75-187 37-159 (276)
11 2v2f_A Penicillin binding prot 32.5 23 0.00077 18.7 1.6 14 68-81 7-20 (26)
12 1hzt_A Isopentenyl diphosphate 31.7 47 0.0016 25.5 4.1 57 42-98 4-69 (190)
13 3c12_A FLGD, flagellar protein 30.3 64 0.0022 24.1 4.5 16 67-82 42-57 (138)
14 2dho_A Isopentenyl-diphosphate 29.9 98 0.0034 25.1 5.9 55 41-95 26-92 (235)
15 3osv_A Flagellar basal-BODY RO 29.1 61 0.0021 24.2 4.1 15 44-58 41-55 (138)
16 2pny_A Isopentenyl-diphosphate 25.9 86 0.0029 25.8 4.9 54 41-94 37-102 (246)
17 2ln7_A LPXTG-SITE transpeptida 25.0 18 0.00061 27.6 0.4 21 40-60 78-98 (147)
18 2fkb_A Putative nudix hydrolas 23.5 1.9E+02 0.0064 21.5 6.2 54 41-94 9-69 (180)
19 3nwm_A Peptide/beta-2microglob 22.1 21 0.0007 32.5 0.3 9 180-188 101-109 (443)
20 1nnx_A Protein YGIW; structura 21.7 90 0.0031 22.7 3.7 22 65-86 52-73 (109)
21 3u6r_L Antibody 1:7 (light cha 20.5 21 0.00072 26.7 0.0 6 184-189 101-106 (143)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=3.6e-45 Score=310.62 Aligned_cols=202 Identities=58% Similarity=0.982 Sum_probs=152.4
Q ss_pred CCCCCCCCCceEEecCCccCCCCeEEEEEEeeeeecCCCeEEEcCCCCEEEEEEecCCcccceEEEEcCCCCcEEEEEec
Q 027044 5 PSFGGAAANPVAVISPQYCSPHPIDLAIVRKVMISSSGGFDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGNPIVTLREK 84 (229)
Q Consensus 5 ~~~~~~~~~p~~vv~~~~~~~~~~~l~vk~k~~s~s~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~pL~~i~~k 84 (229)
|+-=-++++|++||.++||++++++|+||||+++|++++|+|+|++|+++|+|+++.++++.++.|+|++|+||++|++|
T Consensus 15 ~~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk 94 (217)
T 1zxu_A 15 PSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREK 94 (217)
T ss_dssp ---------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC-
T ss_pred CCCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEcc
Confidence 44445678999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEEcCCCcccceEEEEEecccccccCCceEEEEEcCCCCCceeeEEEeecCCcCcCCCeeEEEeCCCCceE
Q 027044 85 AMSRHHRWQVFRGESTERRHLIFSAKRSRSGWFSSTTKLDVFLANNTREDVCDFRVVEGSSWLFEPSSCTIYAGKSSAIV 164 (229)
Q Consensus 85 ~~s~~~~w~v~~g~~~~~~~~l~~vkk~~~~~~~~k~~~~v~~~~~~~~~~~~~~v~~G~~~~~~~~~~~I~~~~~g~~V 164 (229)
.++++++|+||+++..+.+++++++|+++ ++.++++++|++.++..++.+.|+| +| +|+ +++|+|+++.++++|
T Consensus 95 ~~~~~~~~~v~~~~~~~~~~~i~~vrk~~--~~~~~~~~~V~~~~~~~~~~~~~~I-~G-~~~--~~~f~I~~~~~~~~V 168 (217)
T 1zxu_A 95 MVSMHDRWQVFRGGSTDQRDLLYTVKRSS--MLQLKTKLDVFLGHNKDEKRCDFRV-KG-SWL--ERSCVVYAGESDAIV 168 (217)
T ss_dssp -----CEEEEEETTCCCGGGEEEEEEC---------CCEEEEETTCCC-CCCSEEE-ES-CTT--TTCCEEEETTTCCEE
T ss_pred ccccCcEEEEEcCCCCCCCcEEEEEEEec--cccCCCeEEEEECCCCCCCceEEEE-EE-eEe--CCEEEEEECCCCEEE
Confidence 99999999999998654456899999874 3447899999998765555679999 99 999 999999998557999
Q ss_pred EEEEeeeeeeeeeeeceeEEEEEeCCCCHHHHHHHHHHHHhhhhccCC
Q 027044 165 AQMHEKQTVKSIFLGKDNFMVTVHPNVDYAFIVALIVILDEINRAHSS 212 (229)
Q Consensus 165 A~V~rk~~~~~~~~g~dtY~l~V~pgvD~ali~alvi~lD~~~~~~~~ 212 (229)
|+|+|||+++++++++|+|.|+|.|++|.+|+||+|++||+|+++++.
T Consensus 169 a~I~kk~~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~~ 216 (217)
T 1zxu_A 169 AQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216 (217)
T ss_dssp EEEEEC--------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC----
T ss_pred EEEEeeeeccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhccC
Confidence 999999988888999999999999999999999999999999998764
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.19 E-value=7.7e-06 Score=68.45 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=69.4
Q ss_pred CCCCeEEEEEEeeeeecCCCeEEEcCCCCEEEEEEecCCcccceEEEEcCCCC----cEEEEEec-cccccceEEEEEcC
Q 027044 24 SPHPIDLAIVRKVMISSSGGFDVKDTNGNILFKVKDVFAFMHRRRVLLDGAGN----PIVTLREK-AMSRHHRWQVFRGE 98 (229)
Q Consensus 24 ~~~~~~l~vk~k~~s~s~~~f~V~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~----pL~~i~~k-~~s~~~~w~v~~g~ 98 (229)
...+..|+++.+.+++ ++.+.|+|.+|++|+++.-+.+++..+..++++++. ||++|+++ .+++++.|+|+.++
T Consensus 59 ~~G~~vf~V~~~~~~~-~~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGL-HDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGH 137 (217)
T ss_dssp TTSCEEEEEECSSTTC-CSEEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETT
T ss_pred CCCCEEEEEEccccCC-CCEEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECC
Confidence 3578899999987777 779999999999999999999999999999998865 79999997 25689999999876
Q ss_pred CCcccceEEEEEecccccccCCceEEEEEc
Q 027044 99 STERRHLIFSAKRSRSGWFSSTTKLDVFLA 128 (229)
Q Consensus 99 ~~~~~~~l~~vkk~~~~~~~~k~~~~v~~~ 128 (229)
...++.+.++++-. .+..+++|+..
T Consensus 138 ~~~~~~~~~~I~G~-----~~~~~f~I~~~ 162 (217)
T 1zxu_A 138 NKDEKRCDFRVKGS-----WLERSCVVYAG 162 (217)
T ss_dssp CCC-CCCSEEEESC-----TTTTCCEEEET
T ss_pred CCCCCceEEEEEEe-----EeCCEEEEEEC
Confidence 43233456777643 24677888765
No 3
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=82.40 E-value=0.67 Score=31.11 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=21.5
Q ss_pred EEEeCCCCHHHHHHHHHHHHhhhhccCCCCCCCC
Q 027044 185 VTVHPNVDYAFIVALIVILDEINRAHSSSSSSGG 218 (229)
Q Consensus 185 l~V~pgvD~ali~alvi~lD~~~~~~~~~~~s~~ 218 (229)
|-|.||.|.+|.+..+|--..-+-.+-...||||
T Consensus 28 lgvgpGFDAALqvSa~Ig~nl~kfrdv~Ges~g~ 61 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGG 61 (75)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HccCcChhHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 4689999999988877766655544444444433
No 4
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=83.02 E-value=0.26 Score=30.45 Aligned_cols=19 Identities=58% Similarity=1.059 Sum_probs=9.5
Q ss_pred ccCCCCCCCCCCCCCCCCC
Q 027044 209 AHSSSSSSGGGGGGGGGAG 227 (229)
Q Consensus 209 ~~~~~~~s~~~~~~~~~~~ 227 (229)
.+.-+|+-|||.|||.|||
T Consensus 17 sdslshsdgggsgggsggg 35 (52)
T 2lqh_B 17 SDSLSHSDGGGSGGGSGGG 35 (52)
Confidence 3344466555555554443
No 5
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=62.18 E-value=1.6 Score=33.57 Aligned_cols=14 Identities=86% Similarity=1.813 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 027044 216 SGGGGGGGGGAGGG 229 (229)
Q Consensus 216 s~~~~~~~~~~~~~ 229 (229)
|||||.||||-|||
T Consensus 134 ~~~~~~~~~~~~~~ 147 (149)
T 3u6r_H 134 SGGGGSGGGGSGGG 147 (149)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 56666666665553
No 6
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=56.25 E-value=2.4 Score=31.79 Aligned_cols=14 Identities=79% Similarity=1.666 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 027044 215 SSGGGGGGGGGAGG 228 (229)
Q Consensus 215 ~s~~~~~~~~~~~~ 228 (229)
.|||||.||||.+|
T Consensus 119 ~~~~~~~~~~~~~~ 132 (135)
T 1p4b_L 119 GSGGGGSGGGGSGG 132 (135)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 46666666555444
No 7
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=50.78 E-value=4 Score=39.54 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=0.0
Q ss_pred ceEEEEEec
Q 027044 104 HLIFSAKRS 112 (229)
Q Consensus 104 ~~l~~vkk~ 112 (229)
+-+|++||.
T Consensus 116 r~~f~aKk~ 124 (736)
T 3ng9_A 116 RAVFQAKKR 124 (736)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 345666553
No 8
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=36.75 E-value=1.8e+02 Score=24.10 Aligned_cols=90 Identities=10% Similarity=0.161 Sum_probs=49.8
Q ss_pred ccceEEEEEcCCCcccceEEEEEecccccccCCceEEEEEcCCC---CCceeeEEEeecCCcCcCCCeeEEEeCCC----
Q 027044 88 RHHRWQVFRGESTERRHLIFSAKRSRSGWFSSTTKLDVFLANNT---REDVCDFRVVEGSSWLFEPSSCTIYAGKS---- 160 (229)
Q Consensus 88 ~~~~w~v~~g~~~~~~~~l~~vkk~~~~~~~~k~~~~v~~~~~~---~~~~~~~~v~~G~~~~~~~~~~~I~~~~~---- 160 (229)
+.++|.+|..+. .+..|...||.. ..-...+-|++.... .+..--=.| +- ||+ +..|+|++...
T Consensus 30 ~yp~y~l~~~~~--~~~fLlaark~~---~~~~s~YiIS~d~~dlsr~s~~yvGKL-rs-Nf~--Gt~F~iyD~g~~p~~ 100 (246)
T 3c5n_A 30 MYPSYFLHLDTE--KKVFLLAGRKRK---RSKTANYLISIDPTNLSRGGENFIGKL-RS-NLL--GNRFTVFDNGQNPQR 100 (246)
T ss_dssp CCCEEEEEESSS--SCCEEEEEEECT---TCSSCEEEEESCTTC------CEEEEE-EE-CSS--SSEEEEECSCBCGGG
T ss_pred CceEEEEEEeCC--CcEEEEeeeecc---CCCCceEEEEeCccccccCCceEEEEE-EE-ccC--CCEEEEECCCCCccc
Confidence 557888887642 123455666543 223467888764321 111223455 66 999 99999998721
Q ss_pred ---------CceEEEEEeeeeeeeeeeeceeEEEEE
Q 027044 161 ---------SAIVAQMHEKQTVKSIFLGKDNFMVTV 187 (229)
Q Consensus 161 ---------g~~VA~V~rk~~~~~~~~g~dtY~l~V 187 (229)
..+||.|.-+..... ..+--...+.+
T Consensus 101 ~~s~~~~~~r~el~~v~Ye~n~l~-~~gPR~m~v~i 135 (246)
T 3c5n_A 101 GYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVII 135 (246)
T ss_dssp CTTSCGGGBCCEEEEEEECCCCCC----CCCEEEEE
T ss_pred ccCcccccccEEEEEEEEEecccC-CCCCeEEEEEe
Confidence 177888877643111 12334555555
No 9
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=35.19 E-value=31 Score=24.86 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=14.0
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhhhccCC
Q 027044 184 MVTVHPNVDYAFIVALIVILDEINRAHSS 212 (229)
Q Consensus 184 ~l~V~pgvD~ali~alvi~lD~~~~~~~~ 212 (229)
.|+|.. ...+.-.|.-++.+.+...+..
T Consensus 57 ~V~I~G-~~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 57 IAHIMG-PPDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp EEEEES-SHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEEe-CHHHHHHHHHHHHHHHhccccC
Confidence 355663 3445555666666655555443
No 10
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=33.25 E-value=2.2e+02 Score=24.04 Aligned_cols=103 Identities=11% Similarity=0.154 Sum_probs=53.5
Q ss_pred CCcEEEEEecc--c--cccceEEEEEcCCCcccceEEEEEecccccccCCceEEEEEcCCC---CCceeeEEEeecCCcC
Q 027044 75 GNPIVTLREKA--M--SRHHRWQVFRGESTERRHLIFSAKRSRSGWFSSTTKLDVFLANNT---REDVCDFRVVEGSSWL 147 (229)
Q Consensus 75 G~pL~~i~~k~--~--s~~~~w~v~~g~~~~~~~~l~~vkk~~~~~~~~k~~~~v~~~~~~---~~~~~~~~v~~G~~~~ 147 (229)
+..-+.|+|.. + .+.++|..|..+. .+..|...||.. ..-...+-|++.... .+..--=.| +- ||+
T Consensus 37 ~~iqC~I~R~k~g~~~g~yp~y~L~l~~~--~~~fLLaarK~k---~~~ts~YiIS~d~~dlsr~s~~yvGKL-rS-Nfl 109 (276)
T 2fim_A 37 RTVRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRK---RSKTANYLISIDPTNLSRGGENFIGKL-RS-NLL 109 (276)
T ss_dssp CCEEEEEEEEC-------CCEEEEEECSS--SCEEEEEEEECT---TCSSCEEEEESCTTC------CEEEEE-EE-CSS
T ss_pred CeEEEEEEEeCCCCCCCCceEEEEEEeCC--CCEEEEEEEecc---CCCCceEEEEecchhcccCCceEEEEE-EE-ccC
Confidence 44556665522 1 3557899998641 234466666543 234467888765321 111223456 66 999
Q ss_pred cCCCeeEEEeCCC-------------CceEEEEEeeeeeeeeeeeceeEEEEE
Q 027044 148 FEPSSCTIYAGKS-------------SAIVAQMHEKQTVKSIFLGKDNFMVTV 187 (229)
Q Consensus 148 ~~~~~~~I~~~~~-------------g~~VA~V~rk~~~~~~~~g~dtY~l~V 187 (229)
+..|+|++... ..+||.|.-+..... ..+--...+.|
T Consensus 110 --GtkF~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg-~~gPR~m~v~i 159 (276)
T 2fim_A 110 --GNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVII 159 (276)
T ss_dssp --SSEEEEECSSBCGGGCTTSCGGGBCCEEEEEEEC----------CCEEEEE
T ss_pred --CCEEEEECCCCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEe
Confidence 99999998721 167888877643111 12334555555
No 11
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=32.48 E-value=23 Score=18.69 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=10.4
Q ss_pred EEEEcCCCCcEEEE
Q 027044 68 RVLLDGAGNPIVTL 81 (229)
Q Consensus 68 ~~l~D~~G~pL~~i 81 (229)
-.|+|.+|+++.++
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 46788888877766
No 12
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=31.71 E-value=47 Score=25.47 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=19.3
Q ss_pred CCeEEEcCCCCEEEEEEecCCcc-------cceEEEEcCCCCcEEEEEecc-ccccceEEE-EEcC
Q 027044 42 GGFDVKDTNGNILFKVKDVFAFM-------HRRRVLLDGAGNPIVTLREKA-MSRHHRWQV-FRGE 98 (229)
Q Consensus 42 ~~f~V~D~~G~~vf~V~g~~~s~-------~~k~~l~D~~G~pL~~i~~k~-~s~~~~w~v-~~g~ 98 (229)
+-++|+|++|+++..+.-..... .-...|.+.+|+.|+.-|... ..+...|.+ --|.
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ 69 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGH 69 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEEC
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCccccc
Confidence 45789999999988765544331 123467788888777544322 234577887 4443
No 13
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=30.32 E-value=64 Score=24.05 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=8.9
Q ss_pred eEEEEcCCCCcEEEEE
Q 027044 67 RRVLLDGAGNPIVTLR 82 (229)
Q Consensus 67 k~~l~D~~G~pL~~i~ 82 (229)
++.|+|.+|+.+-++.
T Consensus 42 ~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 42 NFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEECSSCCEEEEEE
T ss_pred EEEEEeCCCCEEEEEE
Confidence 4555566665555554
No 14
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=29.94 E-value=98 Score=25.12 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=35.0
Q ss_pred CCCeEEEcCCCCEEEEEEecCCc---------ccc--eEEEEcCCCCcEEEEEecc-ccccceEEEE
Q 027044 41 SGGFDVKDTNGNILFKVKDVFAF---------MHR--RRVLLDGAGNPIVTLREKA-MSRHHRWQVF 95 (229)
Q Consensus 41 ~~~f~V~D~~G~~vf~V~g~~~s---------~~~--k~~l~D~~G~pL~~i~~k~-~s~~~~w~v~ 95 (229)
.+-+.|+|++|+++.++.-.... ... ...|.|.+|+.|++-|... ..+...|+.-
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p 92 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNT 92 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESS
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEec
Confidence 45689999999999998544221 111 2356788898877544321 2345678753
No 15
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=29.05 E-value=61 Score=24.21 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=7.9
Q ss_pred eEEEcCCCCEEEEEE
Q 027044 44 FDVKDTNGNILFKVK 58 (229)
Q Consensus 44 f~V~D~~G~~vf~V~ 58 (229)
.+|+|++|++|.+++
T Consensus 41 v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 41 VNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEE
Confidence 445555555555554
No 16
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=25.85 E-value=86 Score=25.76 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=34.0
Q ss_pred CCCeEEEcCCCCEEEEEEecCCc---------cc--ceEEEEcCCCCcEEEEEecc-ccccceEEE
Q 027044 41 SGGFDVKDTNGNILFKVKDVFAF---------MH--RRRVLLDGAGNPIVTLREKA-MSRHHRWQV 94 (229)
Q Consensus 41 ~~~f~V~D~~G~~vf~V~g~~~s---------~~--~k~~l~D~~G~pL~~i~~k~-~s~~~~w~v 94 (229)
.+-+.|+|++|+++.++.-.... +. -...|.|.+|+.|++-|... ..+...|..
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~ 102 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTD 102 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCC
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEe
Confidence 45689999999999998554211 11 13456788898777544321 234556774
No 17
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=25.04 E-value=18 Score=27.61 Aligned_cols=21 Identities=5% Similarity=0.229 Sum_probs=14.6
Q ss_pred cCCCeEEEcCCCCEEEEEEec
Q 027044 40 SSGGFDVKDTNGNILFKVKDV 60 (229)
Q Consensus 40 s~~~f~V~D~~G~~vf~V~g~ 60 (229)
.+|.+.|.+.++...|+|+..
T Consensus 78 ~GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 78 EKDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp TTCEEEEEETTEEEEEEEEEE
T ss_pred CCCEEEEEECCcEEEEEEEeE
Confidence 367777777777777777663
No 18
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=23.52 E-value=1.9e+02 Score=21.46 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=33.5
Q ss_pred CCCeEEEcCCCCEEEEEEecCC------cccceEEEEcCCCCcEEEEEeccc-cccceEEE
Q 027044 41 SGGFDVKDTNGNILFKVKDVFA------FMHRRRVLLDGAGNPIVTLREKAM-SRHHRWQV 94 (229)
Q Consensus 41 ~~~f~V~D~~G~~vf~V~g~~~------s~~~k~~l~D~~G~pL~~i~~k~~-s~~~~w~v 94 (229)
.+-++|+|.+|+++....-+.. ...-...+.|.+|+.|+.-|...- .+...|.+
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDA 69 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEES
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEe
Confidence 5668999999999988764321 112235567888987774333221 22456876
No 19
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}
Probab=22.09 E-value=21 Score=32.48 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=4.4
Q ss_pred ceeEEEEEe
Q 027044 180 KDNFMVTVH 188 (229)
Q Consensus 180 ~dtY~l~V~ 188 (229)
.++|.=.|.
T Consensus 101 ~~~ytC~V~ 109 (443)
T 3nwm_A 101 TDTYACRVK 109 (443)
T ss_dssp SCCEEEEEE
T ss_pred CCEEEEEEE
Confidence 455554443
No 20
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=21.66 E-value=90 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=15.1
Q ss_pred cceEEEEcCCCCcEEEEEeccc
Q 027044 65 HRRRVLLDGAGNPIVTLREKAM 86 (229)
Q Consensus 65 ~~k~~l~D~~G~pL~~i~~k~~ 86 (229)
..+..|.|.+|...+.|-++.|
T Consensus 52 ~d~Y~F~D~TG~I~VeId~~~w 73 (109)
T 1nnx_A 52 DDLYVFKDASGTINVDIDHKRW 73 (109)
T ss_dssp TTEEEEEETTEEEEEECCGGGS
T ss_pred CCeEEEECCCccEEEEEChhhc
Confidence 3567777777777777776654
No 21
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=20.54 E-value=21 Score=26.72 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.6
Q ss_pred EEEEeC
Q 027044 184 MVTVHP 189 (229)
Q Consensus 184 ~l~V~p 189 (229)
.|+|.+
T Consensus 101 ~L~V~~ 106 (143)
T 3u6r_L 101 KVEIKA 106 (143)
T ss_dssp EEEEC-
T ss_pred EEEECC
Confidence 455554
Done!