BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027045
         (229 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKG|A Chain A, 3-Mercaptopyruvate Sulfurtransferase From Leishmania Major
          Length = 373

 Score = 27.3 bits (59), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 105 FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW--FTGIYE----NRAYDSFGSLKQLKM 158
           F +S GSG    +N++L H           G+W  ++G++         D +G   Q + 
Sbjct: 249 FVFSXGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIXRSIIDDYGXCXQXQT 308

Query: 159 LNLGDN 164
            +LGDN
Sbjct: 309 PSLGDN 314


>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
 pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
          Length = 606

 Score = 26.9 bits (58), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 18/102 (17%)

Query: 68  VGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEE 127
           +  DD  +SDCC+       N +  + + LS NE +     +               F+E
Sbjct: 357 LSHDDIETSDCCNLQLR---NLSHLQSLNLSYNEPLSLKTEA---------------FKE 398

Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169
             +L+L    FT +    A   F +L  LK+LNL  +  + S
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,669,562
Number of Sequences: 62578
Number of extensions: 203375
Number of successful extensions: 383
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 6
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)