Query 027045
Match_columns 229
No_of_seqs 314 out of 2589
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 5.2E-20 1.1E-24 179.0 16.6 162 37-218 27-203 (968)
2 PLN03150 hypothetical protein; 99.7 2.5E-16 5.5E-21 146.6 13.8 152 34-215 367-527 (623)
3 PLN00113 leucine-rich repeat r 99.4 1.4E-12 3.1E-17 127.2 8.0 95 119-218 492-586 (968)
4 PLN03150 hypothetical protein; 99.2 2.2E-11 4.8E-16 113.7 7.5 87 127-218 419-505 (623)
5 KOG4194 Membrane glycoprotein 99.2 1.3E-12 2.9E-17 117.0 -2.1 96 117-217 284-379 (873)
6 KOG0617 Ras suppressor protein 99.1 1E-12 2.3E-17 101.8 -4.2 109 91-218 32-165 (264)
7 PF14580 LRR_9: Leucine-rich r 99.1 5.9E-11 1.3E-15 93.4 4.3 106 93-218 20-128 (175)
8 PF13855 LRR_8: Leucine rich r 99.1 8.5E-11 1.9E-15 76.4 2.9 59 127-189 2-60 (61)
9 PF13855 LRR_8: Leucine rich r 99.1 8.4E-11 1.8E-15 76.5 2.6 61 154-215 1-61 (61)
10 KOG4194 Membrane glycoprotein 99.1 8.2E-11 1.8E-15 105.7 3.2 97 117-218 140-236 (873)
11 KOG0617 Ras suppressor protein 98.9 9.5E-11 2.1E-15 91.0 -0.7 90 121-218 28-117 (264)
12 PF14580 LRR_9: Leucine-rich r 98.9 7.8E-10 1.7E-14 87.1 4.0 94 122-225 15-110 (175)
13 KOG4237 Extracellular matrix p 98.9 1.9E-10 4.2E-15 99.0 -2.0 111 92-218 67-179 (498)
14 KOG0472 Leucine-rich repeat pr 98.8 9.8E-10 2.1E-14 95.1 1.0 92 120-218 429-543 (565)
15 KOG4237 Extracellular matrix p 98.8 6E-10 1.3E-14 96.0 -1.1 103 119-226 267-369 (498)
16 KOG1259 Nischarin, modulator o 98.8 9E-10 1.9E-14 92.3 -0.9 93 125-227 306-398 (490)
17 PF08263 LRRNT_2: Leucine rich 98.7 4.1E-08 9E-13 59.2 4.4 40 38-88 2-43 (43)
18 PRK15370 E3 ubiquitin-protein 98.6 6.7E-07 1.5E-11 85.0 14.4 43 28-79 52-95 (754)
19 KOG0618 Serine/threonine phosp 98.6 5.5E-09 1.2E-13 98.2 -0.2 111 82-214 376-487 (1081)
20 KOG0472 Leucine-rich repeat pr 98.6 2.1E-09 4.6E-14 93.0 -3.1 109 93-219 389-521 (565)
21 KOG0444 Cytoskeletal regulator 98.6 5.5E-09 1.2E-13 95.1 -1.0 88 122-217 99-187 (1255)
22 KOG0444 Cytoskeletal regulator 98.6 4.7E-09 1E-13 95.5 -2.0 91 121-219 217-307 (1255)
23 PRK15387 E3 ubiquitin-protein 98.5 2.8E-07 6E-12 87.6 7.7 78 127-218 383-460 (788)
24 KOG1259 Nischarin, modulator o 98.5 2.1E-08 4.5E-13 84.2 -0.8 96 122-226 280-375 (490)
25 KOG0618 Serine/threonine phosp 98.5 1.7E-08 3.7E-13 94.9 -1.9 90 121-218 378-467 (1081)
26 PF12799 LRR_4: Leucine Rich r 98.4 2.5E-07 5.5E-12 56.0 3.4 38 179-218 2-39 (44)
27 PRK15370 E3 ubiquitin-protein 98.4 9.2E-07 2E-11 84.1 8.5 79 126-218 220-298 (754)
28 PRK15387 E3 ubiquitin-protein 98.3 1.8E-06 4E-11 82.1 7.8 86 126-222 242-361 (788)
29 cd00116 LRR_RI Leucine-rich re 98.3 2.7E-07 5.8E-12 78.7 1.4 91 126-217 137-235 (319)
30 cd00116 LRR_RI Leucine-rich re 98.3 2.2E-07 4.8E-12 79.2 0.9 116 91-218 80-208 (319)
31 PLN03210 Resistant to P. syrin 98.3 4.8E-06 1E-10 83.2 10.3 88 121-218 797-885 (1153)
32 PF12799 LRR_4: Leucine Rich r 98.2 9.3E-07 2E-11 53.5 2.9 36 155-191 2-37 (44)
33 PLN03210 Resistant to P. syrin 98.2 7.4E-06 1.6E-10 81.9 10.3 87 123-218 654-740 (1153)
34 KOG1859 Leucine-rich repeat pr 98.1 9.8E-08 2.1E-12 88.2 -4.4 95 121-226 182-277 (1096)
35 COG4886 Leucine-rich repeat (L 98.1 2.4E-06 5.3E-11 75.4 2.9 79 127-213 141-219 (394)
36 KOG0531 Protein phosphatase 1, 98.0 1.5E-06 3.3E-11 77.5 1.5 89 122-220 91-179 (414)
37 KOG4579 Leucine-rich repeat (L 98.0 4.4E-07 9.6E-12 68.2 -2.0 66 124-196 75-140 (177)
38 COG4886 Leucine-rich repeat (L 98.0 3.7E-06 8.1E-11 74.3 2.8 92 121-220 111-203 (394)
39 KOG1644 U2-associated snRNP A' 97.9 1.4E-05 2.9E-10 63.8 4.7 89 120-212 58-149 (233)
40 KOG3207 Beta-tubulin folding c 97.9 2.4E-06 5.1E-11 75.0 0.4 98 122-224 218-322 (505)
41 KOG0532 Leucine-rich repeat (L 97.9 1.6E-06 3.5E-11 78.3 -1.6 89 121-218 161-249 (722)
42 KOG4658 Apoptotic ATPase [Sign 97.8 6.8E-06 1.5E-10 79.5 2.0 89 120-214 565-653 (889)
43 KOG0531 Protein phosphatase 1, 97.8 5.2E-06 1.1E-10 74.1 1.0 96 123-227 69-164 (414)
44 KOG1859 Leucine-rich repeat pr 97.8 4.8E-07 1E-11 83.8 -6.2 106 93-218 188-294 (1096)
45 KOG0532 Leucine-rich repeat (L 97.8 1.5E-06 3.1E-11 78.6 -3.4 96 121-225 116-234 (722)
46 KOG1644 U2-associated snRNP A' 97.7 4.5E-05 9.7E-10 60.9 4.7 87 126-218 42-128 (233)
47 KOG4579 Leucine-rich repeat (L 97.7 2.5E-06 5.5E-11 64.1 -2.8 89 122-218 49-138 (177)
48 KOG3207 Beta-tubulin folding c 97.6 5.2E-06 1.1E-10 72.9 -2.0 95 120-218 166-261 (505)
49 KOG4658 Apoptotic ATPase [Sign 97.5 4.4E-05 9.6E-10 74.0 2.0 84 125-214 544-629 (889)
50 KOG2739 Leucine-rich acidic nu 97.4 9E-05 1.9E-09 61.2 2.7 84 119-209 58-149 (260)
51 KOG2739 Leucine-rich acidic nu 96.9 0.00075 1.6E-08 55.8 2.9 88 123-218 40-131 (260)
52 KOG2123 Uncharacterized conser 96.8 5.1E-05 1.1E-09 63.5 -4.9 84 119-209 34-123 (388)
53 PF13306 LRR_5: Leucine rich r 96.7 0.0059 1.3E-07 44.8 6.4 100 93-212 13-112 (129)
54 KOG3665 ZYG-1-like serine/thre 96.6 0.0013 2.8E-08 62.5 2.3 90 121-217 168-264 (699)
55 KOG2982 Uncharacterized conser 96.5 0.00084 1.8E-08 56.9 0.6 63 151-213 94-156 (418)
56 PF13306 LRR_5: Leucine rich r 96.4 0.0086 1.9E-07 43.9 5.7 89 117-213 3-91 (129)
57 KOG1909 Ran GTPase-activating 96.3 0.0006 1.3E-08 58.6 -1.5 96 121-216 208-311 (382)
58 KOG2982 Uncharacterized conser 96.2 0.0012 2.6E-08 56.0 -0.2 85 93-190 72-158 (418)
59 KOG3665 ZYG-1-like serine/thre 95.9 0.0056 1.2E-07 58.2 3.0 88 124-217 146-234 (699)
60 PF00560 LRR_1: Leucine Rich R 95.9 0.0024 5.2E-08 32.4 0.2 11 181-191 3-13 (22)
61 PRK15386 type III secretion pr 95.7 0.02 4.2E-07 51.1 5.4 50 127-190 73-124 (426)
62 KOG0473 Leucine-rich repeat pr 95.7 0.00018 4E-09 58.8 -6.7 82 125-214 41-122 (326)
63 PF00560 LRR_1: Leucine Rich R 95.7 0.0058 1.2E-07 30.9 1.1 16 128-144 2-17 (22)
64 KOG2123 Uncharacterized conser 95.4 0.0006 1.3E-08 57.2 -5.0 85 125-218 18-103 (388)
65 COG5238 RNA1 Ran GTPase-activa 95.4 0.02 4.3E-07 48.2 3.8 47 121-167 87-133 (388)
66 KOG1909 Ran GTPase-activating 95.3 0.005 1.1E-07 53.1 0.2 18 123-140 154-171 (382)
67 PRK15386 type III secretion pr 94.8 0.092 2E-06 46.9 6.7 74 126-214 94-188 (426)
68 COG5238 RNA1 Ran GTPase-activa 94.4 0.022 4.7E-07 48.0 1.7 120 91-218 29-172 (388)
69 PF13504 LRR_7: Leucine rich r 94.3 0.028 6.1E-07 26.5 1.3 11 180-190 3-13 (17)
70 KOG2120 SCF ubiquitin ligase, 94.1 0.0024 5.2E-08 54.2 -4.6 112 90-213 232-373 (419)
71 smart00369 LRR_TYP Leucine-ric 93.9 0.061 1.3E-06 28.1 2.3 18 178-196 2-19 (26)
72 smart00370 LRR Leucine-rich re 93.9 0.061 1.3E-06 28.1 2.3 18 178-196 2-19 (26)
73 KOG2120 SCF ubiquitin ligase, 92.2 0.0027 5.8E-08 53.9 -7.0 89 122-215 206-325 (419)
74 smart00370 LRR Leucine-rich re 91.8 0.14 3E-06 26.6 1.8 15 126-140 2-16 (26)
75 smart00369 LRR_TYP Leucine-ric 91.8 0.14 3E-06 26.6 1.8 15 126-140 2-16 (26)
76 KOG0473 Leucine-rich repeat pr 91.6 0.0041 8.9E-08 51.1 -6.3 85 90-192 40-125 (326)
77 smart00365 LRR_SD22 Leucine-ri 86.8 0.64 1.4E-05 24.5 2.0 16 203-218 2-17 (26)
78 smart00364 LRR_BAC Leucine-ric 85.3 0.57 1.2E-05 24.7 1.3 17 179-196 3-19 (26)
79 PF13516 LRR_6: Leucine Rich r 82.9 0.49 1.1E-05 24.0 0.4 15 126-140 2-16 (24)
80 KOG1947 Leucine rich repeat pr 79.9 0.98 2.1E-05 40.3 1.6 93 122-214 210-306 (482)
81 smart00368 LRR_RI Leucine rich 78.7 1.8 3.9E-05 23.0 1.8 14 126-139 2-15 (28)
82 KOG3864 Uncharacterized conser 75.2 0.35 7.5E-06 39.0 -2.4 32 154-185 151-183 (221)
83 KOG3864 Uncharacterized conser 67.0 1 2.2E-05 36.3 -1.4 81 127-212 102-185 (221)
84 KOG3763 mRNA export factor TAP 63.4 3.8 8.2E-05 37.9 1.3 87 123-216 215-312 (585)
85 KOG3763 mRNA export factor TAP 60.1 4.6 0.0001 37.3 1.2 64 152-218 216-285 (585)
86 TIGR00864 PCC polycystin catio 49.5 11 0.00024 41.3 2.1 32 132-167 1-32 (2740)
87 PF07172 GRP: Glycine rich pro 49.3 12 0.00026 26.3 1.7 10 15-24 6-15 (95)
88 TIGR00864 PCC polycystin catio 47.8 13 0.00027 41.0 2.2 32 160-191 1-32 (2740)
89 KOG4308 LRR-containing protein 44.4 0.81 1.8E-05 41.8 -6.2 40 178-217 262-304 (478)
90 PF07172 GRP: Glycine rich pro 39.3 44 0.00095 23.5 3.3 21 7-27 1-21 (95)
91 KOG4308 LRR-containing protein 32.3 2.1 4.6E-05 39.2 -5.5 96 121-217 110-218 (478)
92 smart00367 LRR_CC Leucine-rich 30.1 39 0.00085 17.1 1.4 10 179-188 3-12 (26)
93 KOG1947 Leucine rich repeat pr 29.6 25 0.00055 31.2 1.0 89 124-218 186-285 (482)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=5.2e-20 Score=179.04 Aligned_cols=162 Identities=30% Similarity=0.438 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCcEEEEecCC-CccccccCCCCCc-
Q 027045 37 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSA- 114 (229)
Q Consensus 37 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~- 114 (229)
.+.|+.+|++||+++. +|.+ .+.+|+. ..+|| .|.||+|+. .++|+.|++++ ++.+.++......
T Consensus 27 ~~~~~~~l~~~~~~~~----~~~~--~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~ 93 (968)
T PLN00113 27 HAEELELLLSFKSSIN----DPLK--YLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLP 93 (968)
T ss_pred CHHHHHHHHHHHHhCC----CCcc--cCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCCccccCChHHhCCC
Confidence 5689999999999986 5554 6789987 67899 999999975 57999999999 8887554322111
Q ss_pred --c-----------ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCcc
Q 027045 115 --L-----------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT 181 (229)
Q Consensus 115 --~-----------~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 181 (229)
. .++...+..+++|++|++++|++++.+|. +.+++|++|++++|.+++.+|..++.+++|+
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 1 11122334666777777777777665553 3467788888888888777888888888888
Q ss_pred EEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 182 TLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 182 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+|++++|.+.+.+|. .+.++++|++|++++|.+.+.
T Consensus 168 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ 203 (968)
T PLN00113 168 VLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQ 203 (968)
T ss_pred EEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCc
Confidence 888888888877776 788888888888888887764
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.69 E-value=2.5e-16 Score=146.60 Aligned_cols=152 Identities=28% Similarity=0.395 Sum_probs=125.2
Q ss_pred CCCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCceecCC--C--CcEEEEecCC-Cccc
Q 027045 34 KACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCC---DDWEGVKCNAT--T--RRVMQLSLNE-TIKF 105 (229)
Q Consensus 34 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C---~~w~gv~C~~~--~--~~v~~L~L~~-~l~~ 105 (229)
..+.+.|.++|+.+|+++. ++. ..+|.+ .+|| ..|.||.|... . .+|+.|+|++ ++.|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~----~~~----~~~W~g------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g 432 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG----LPL----RFGWNG------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG 432 (623)
T ss_pred cccCchHHHHHHHHHHhcC----Ccc----cCCCCC------CCCCCcccccccceeeccCCCCceEEEEEECCCCCccc
Confidence 4566789999999999985 221 237876 2332 16999999531 1 2599999999 8888
Q ss_pred cccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEec
Q 027045 106 NYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185 (229)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 185 (229)
.+| ..+..+++|+.|+|++|+++|.+|. .++.+++|+.|+|++|.++|.+|+.++++++|++|+|
T Consensus 433 ~ip-----------~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 433 FIP-----------NDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred cCC-----------HHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 444 4578899999999999999999998 9999999999999999999999999999999999999
Q ss_pred cCCcCCCCCChhhcCCC-CCCCEEeccCCcC
Q 027045 186 SDNSIEGSRTKQGLANL-RYLQVLDLSGNFN 215 (229)
Q Consensus 186 s~N~l~~~ip~~~~~~l-~~L~~L~L~~N~l 215 (229)
++|+++|.+|. .++.. .++..+++.+|..
T Consensus 498 s~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPA-ALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCCh-HHhhccccCceEEecCCcc
Confidence 99999999998 66653 5678899998864
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.36 E-value=1.4e-12 Score=127.19 Aligned_cols=95 Identities=27% Similarity=0.342 Sum_probs=85.9
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
+..+.++++|++|++++|++.+.+|. .+..+++|++|++++|.+++.+|..+..+++|+.|+|++|++++.+|. .
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~ 566 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPD----ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK-N 566 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCCh----HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh-h
Confidence 34577888999999999999998998 899999999999999999999999999999999999999999988887 7
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
+.++++|++|++++|++++.
T Consensus 567 l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred HhcCcccCEEeccCCcceee
Confidence 88999999999999998873
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=2.2e-11 Score=113.69 Aligned_cols=87 Identities=33% Similarity=0.447 Sum_probs=82.8
Q ss_pred CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (229)
Q Consensus 127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 206 (229)
.++.|+|++|.++|.+|. .+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|. .++++++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence 378899999999999998 999999999999999999999999999999999999999999998997 899999999
Q ss_pred EEeccCCcCCCC
Q 027045 207 VLDLSGNFNITS 218 (229)
Q Consensus 207 ~L~L~~N~l~~~ 218 (229)
+|+|++|++++.
T Consensus 494 ~L~Ls~N~l~g~ 505 (623)
T PLN03150 494 ILNLNGNSLSGR 505 (623)
T ss_pred EEECcCCccccc
Confidence 999999999875
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-12 Score=116.98 Aligned_cols=96 Identities=28% Similarity=0.269 Sum_probs=70.8
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
++...+-++++|+.|++|+|.|..+.++ .+...++|++|+|++|+++...+..|..+..|+.|+|++|.++. +..
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e 358 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAE 358 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHh
Confidence 4556677788888888888888888777 88888888888888888887777777777777777777777765 444
Q ss_pred hhcCCCCCCCEEeccCCcCCC
Q 027045 197 QGLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N~l~~ 217 (229)
..|..+++|+.|||++|.++.
T Consensus 359 ~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEE
Confidence 455566666666666665543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=1e-12 Score=101.75 Aligned_cols=109 Identities=24% Similarity=0.327 Sum_probs=65.7
Q ss_pred CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045 91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169 (229)
Q Consensus 91 ~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~ 169 (229)
...++++.|+. ++.- .+..+..+.+|+.|++++|+|+. .|. .++.+++|+.|+++-|++. .
T Consensus 32 ~s~ITrLtLSHNKl~~------------vppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~-~ 93 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV------------VPPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLN-I 93 (264)
T ss_pred hhhhhhhhcccCceee------------cCCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhh-c
Confidence 34677888888 6543 22334556666666666666666 444 5666666666666666665 5
Q ss_pred CcccccCCCCccEEeccCCcCCC-C-----------------------CChhhcCCCCCCCEEeccCCcCCCC
Q 027045 170 ILPYLNTLTSLTTLILSDNSIEG-S-----------------------RTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 170 ~p~~l~~l~~L~~L~Ls~N~l~~-~-----------------------ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.|..|+.++.|+.|||++|++.. . +|. .++++++|+.|.+..|.+-..
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhC
Confidence 66666666666666666666553 1 444 455666666666666655443
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=5.9e-11 Score=93.42 Aligned_cols=106 Identities=31% Similarity=0.418 Sum_probs=43.8
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccC-CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFH-PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
+.++|+|.+ .+.. + ..++ .+.+|+.|++++|.|+.+ + .+..+++|+.|++++|+++. +
T Consensus 20 ~~~~L~L~~n~I~~-----------I--e~L~~~l~~L~~L~Ls~N~I~~l-~-----~l~~L~~L~~L~L~~N~I~~-i 79 (175)
T PF14580_consen 20 KLRELNLRGNQIST-----------I--ENLGATLDKLEVLDLSNNQITKL-E-----GLPGLPRLKTLDLSNNRISS-I 79 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS---S--
T ss_pred cccccccccccccc-----------c--cchhhhhcCCCEEECCCCCCccc-c-----CccChhhhhhcccCCCCCCc-c
Confidence 467888888 6653 1 2233 578999999999999984 4 68889999999999999994 5
Q ss_pred cccc-cCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 171 LPYL-NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 171 p~~l-~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.+.+ ..+++|+.|++++|+|...-.-..+..+++|++|++.+|+++..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 4444 46899999999999998622223577899999999999998865
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=8.5e-11 Score=76.45 Aligned_cols=59 Identities=34% Similarity=0.432 Sum_probs=30.2
Q ss_pred CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCc
Q 027045 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS 189 (229)
Q Consensus 127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 189 (229)
+|++|++++|+++.+.+. .|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 445555555555554444 45555555555555555554444445555555555555554
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=8.4e-11 Score=76.49 Aligned_cols=61 Identities=31% Similarity=0.377 Sum_probs=55.7
Q ss_pred CCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcC
Q 027045 154 KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215 (229)
Q Consensus 154 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 215 (229)
++|++|++++|+++...+..|..+++|++|++++|+++. ++...|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999997666789999999999999999997 7766899999999999999975
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.06 E-value=8.2e-11 Score=105.73 Aligned_cols=97 Identities=29% Similarity=0.302 Sum_probs=73.2
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
+..+.+..++.|+.||||.|.|+.+.-. .|..-.++++|+|++|+|+..-...|.++.+|..|.|+.|+++. +|.
T Consensus 140 v~se~L~~l~alrslDLSrN~is~i~~~----sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~ 214 (873)
T KOG4194|consen 140 VTSEELSALPALRSLDLSRNLISEIPKP----SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQ 214 (873)
T ss_pred ccHHHHHhHhhhhhhhhhhchhhcccCC----CCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCH
Confidence 4455667777888888888888875444 66666678888888888876666777777888888888888877 777
Q ss_pred hhcCCCCCCCEEeccCCcCCCC
Q 027045 197 QGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
..|.++++|+.|+|..|+|.-.
T Consensus 215 r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred HHhhhcchhhhhhccccceeee
Confidence 6777788888888888877655
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.95 E-value=9.5e-11 Score=90.95 Aligned_cols=90 Identities=26% Similarity=0.338 Sum_probs=81.4
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+-.+.+++.|.||+|+++-. |+ .+..+.+|+.|++++|+++ .+|..++++++|+.|+++-|++.- +|. .|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~v-pp----nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lpr-gfg 99 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVV-PP----NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPR-GFG 99 (264)
T ss_pred cccchhhhhhhhcccCceeec-CC----cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-Ccc-ccC
Confidence 345667889999999999984 55 8999999999999999999 789999999999999999999987 887 899
Q ss_pred CCCCCCEEeccCCcCCCC
Q 027045 201 NLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~ 218 (229)
.++.|++|||.+|++...
T Consensus 100 s~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNEN 117 (264)
T ss_pred CCchhhhhhccccccccc
Confidence 999999999999998765
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=7.8e-10 Score=87.06 Aligned_cols=94 Identities=36% Similarity=0.456 Sum_probs=34.7
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccC-CCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc-
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL- 199 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~- 199 (229)
+.+..++++|+|.+|.|+.+ . .++ .+.+|+.|++++|.++. ++ .+..+++|+.|++++|+++. +.. .+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e-----~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~-~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-E-----NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISE-GLD 84 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CH-HHH
T ss_pred cccccccccccccccccccc-c-----chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-ccc-chH
Confidence 44556789999999999984 3 455 58899999999999993 43 57889999999999999998 764 34
Q ss_pred CCCCCCCEEeccCCcCCCCCCcccCC
Q 027045 200 ANLRYLQVLDLSGNFNITSGSLTRLG 225 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~~~~~~l~ 225 (229)
..+++|++|++++|+|..+.++..|.
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLS 110 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGG
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHH
Confidence 46899999999999999886655443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.86 E-value=1.9e-10 Score=99.02 Aligned_cols=111 Identities=27% Similarity=0.310 Sum_probs=89.9
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCC-CCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDS 169 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~~ 169 (229)
...++|+|.. +|+. +++.+|..+++|+.||||+|+|+.+.|+ .|.+++.|..|-+-+ |+|+..
T Consensus 67 ~~tveirLdqN~I~~-----------iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS-----------IPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CcceEEEeccCCccc-----------CChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhh
Confidence 4577888887 6654 7788899999999999999999999998 999998887776655 899965
Q ss_pred CcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 170 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.-..|+++.+|+-|.+.-|++.- ++.+.|..+++|..|.+-.|.+..+
T Consensus 132 ~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i 179 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSI 179 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhh
Confidence 55678888888888888888876 6666788888888888888877666
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.82 E-value=9.8e-10 Score=95.08 Aligned_cols=92 Identities=30% Similarity=0.353 Sum_probs=68.6
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCC-----------------------CCCcccccC
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN-----------------------DSILPYLNT 176 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~~~p~~l~~ 176 (229)
..++.+++|..|++++|-+.. +|. +++.+..||.|+++.|+|. ...|+.+++
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~-LP~----e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLND-LPE----EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred HHHHhhhcceeeecccchhhh-cch----hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 445556666666666666665 455 5666666666666666554 334445788
Q ss_pred CCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 177 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+.+|..|||.+|.+.. +|+ .++++.+|++|++.+|+|...
T Consensus 504 m~nL~tLDL~nNdlq~-IPp-~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQ-IPP-ILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred hhhcceeccCCCchhh-CCh-hhccccceeEEEecCCccCCC
Confidence 9999999999999998 998 899999999999999999854
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.79 E-value=6e-10 Score=96.04 Aligned_cols=103 Identities=27% Similarity=0.294 Sum_probs=91.7
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
...|..+++|+.|+|++|+|+++-+. .|.+...+++|.|..|++...--..|.++..|+.|+|++|+|+..-|. .
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-a 341 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-A 341 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-c
Confidence 34589999999999999999998888 999999999999999999866667889999999999999999984554 8
Q ss_pred cCCCCCCCEEeccCCcCCCCCCcccCCC
Q 027045 199 LANLRYLQVLDLSGNFNITSGSLTRLGR 226 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~ 226 (229)
|..+.+|..|.|-.|.+..-+.+.+|+.
T Consensus 342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred ccccceeeeeehccCcccCccchHHHHH
Confidence 9999999999999999988777766654
No 16
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=9e-10 Score=92.32 Aligned_cols=93 Identities=31% Similarity=0.419 Sum_probs=50.4
Q ss_pred CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCC
Q 027045 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY 204 (229)
Q Consensus 125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 204 (229)
+|.++.|++|+|.|..+ + .+..+++|+.||||+|.++ .+...-..+.+.+.|.|+.|.+.. +. .++++.+
T Consensus 306 ~Pkir~L~lS~N~i~~v--~----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-LS--GL~KLYS 375 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTV--Q----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-LS--GLRKLYS 375 (490)
T ss_pred ccceeEEeccccceeee--h----hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-hh--hhHhhhh
Confidence 34555555555555442 1 3445555555555555554 233322334445555555555543 32 3666777
Q ss_pred CCEEeccCCcCCCCCCcccCCCC
Q 027045 205 LQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 205 L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
|.+||+++|+|..+..+..+++|
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~L 398 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNL 398 (490)
T ss_pred heeccccccchhhHHHhcccccc
Confidence 77788888877777555555543
No 17
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.66 E-value=4.1e-08 Score=59.15 Aligned_cols=40 Identities=40% Similarity=0.745 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCceec
Q 027045 38 ETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMS--SDCCDDWEGVKCN 88 (229)
Q Consensus 38 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~--~~~C~~w~gv~C~ 88 (229)
+.|+++|++||+++.+ ++.+ .+.+|+. . .+|| +|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~---~~~~--~l~~W~~-----~~~~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNN---DPSG--VLSSWNP-----SSDSDPC-SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT----SC-C--CCTT--T-----T--S-CC-CSTTEEE-
T ss_pred cHHHHHHHHHHHhccc---ccCc--ccccCCC-----cCCCCCe-eeccEEeC
Confidence 5799999999999972 3444 7999998 4 7999 99999995
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.64 E-value=6.7e-07 Score=85.03 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=30.9
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhhccccCCCCC-CCCCCCCCCCCCCCCCCCCC
Q 027045 28 NEIHGYKACLETERTALLEIKSFFISVSDIGY-DDKILPSWVGEDDGMSSDCC 79 (229)
Q Consensus 28 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~~~C 79 (229)
-..++.+...++|.+.++++.+.+. +|. ......+|.+ .+++|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~l~----~p~~~~~~~~~~~~-----~~~fc 95 (754)
T PRK15370 52 YLCHPPETASPEEIKSKFECLRMLA----FPAYADNIQYSRGG-----ADQYC 95 (754)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhc----CCchhhccccccCC-----CCccc
Confidence 3456678888999999999999997 332 1113344988 67888
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.63 E-value=5.5e-09 Score=98.19 Aligned_cols=111 Identities=27% Similarity=0.287 Sum_probs=84.9
Q ss_pred CCCceecCCCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEE
Q 027045 82 WEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLN 160 (229)
Q Consensus 82 w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~ 160 (229)
|+-..| ..++..|+|+. .+.. ++...+.+++.|+.|+||+|.++. +|+ .+..++.|++|.
T Consensus 376 ~p~l~~---~~hLKVLhLsyNrL~~-----------fpas~~~kle~LeeL~LSGNkL~~-Lp~----tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 376 FPVLVN---FKHLKVLHLSYNRLNS-----------FPASKLRKLEELEELNLSGNKLTT-LPD----TVANLGRLHTLR 436 (1081)
T ss_pred hhhhcc---ccceeeeeeccccccc-----------CCHHHHhchHHhHHHhcccchhhh-hhH----HHHhhhhhHHHh
Confidence 444444 34677788888 5543 556678888899999999999988 667 888899999999
Q ss_pred cCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCc
Q 027045 161 LGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF 214 (229)
Q Consensus 161 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 214 (229)
..+|++. ..| .+..++.|+.+|++.|+++...-. .....++|++||+++|.
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhhhhhhh-hhCCCcccceeeccCCc
Confidence 9999988 577 688899999999999999863222 22233789999999996
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.61 E-value=2.1e-09 Score=93.03 Aligned_cols=109 Identities=26% Similarity=0.292 Sum_probs=84.7
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCC-CcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEE-LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
-|+.++++. ++.. +|.. +..++. .+.+.+++|.++. +|. .++.+++|..|++++|.+. .+
T Consensus 389 ~Vt~VnfskNqL~e-lPk~-----------L~~lkelvT~l~lsnn~isf-v~~----~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCE-LPKR-----------LVELKELVTDLVLSNNKISF-VPL----ELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred ceEEEecccchHhh-hhhh-----------hHHHHHHHHHHHhhcCcccc-chH----HHHhhhcceeeecccchhh-hc
Confidence 489999999 6653 3322 222222 3445777777776 677 8999999999999999998 79
Q ss_pred cccccCCCCccEEeccCCcCCC----------------------CCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEG----------------------SRTKQGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~----------------------~ip~~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
|..++.+..|+.|+++.|+|.. .++...+.++.+|..|||.+|.+..++
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IP 521 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIP 521 (565)
T ss_pred chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCC
Confidence 9999999999999999998854 244435888999999999999998874
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.60 E-value=5.5e-09 Score=95.05 Aligned_cols=88 Identities=30% Similarity=0.271 Sum_probs=59.0
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc-cccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
+-.+..|+.||||+|++.. .|. .+..-+++-.|+||+|+|. .+|. -|-++..|-+||||+|++.. +|+ .+.
T Consensus 99 iF~l~dLt~lDLShNqL~E-vP~----~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPP-Q~R 170 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLRE-VPT----NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPP-QIR 170 (1255)
T ss_pred hcccccceeeecchhhhhh-cch----hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCH-HHH
Confidence 4456677777777777776 555 6666667777777777776 4554 34566777777777777766 666 566
Q ss_pred CCCCCCEEeccCCcCCC
Q 027045 201 NLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~ 217 (229)
.+..|+.|+|++|++.-
T Consensus 171 RL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred HHhhhhhhhcCCChhhH
Confidence 77777777777776543
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.58 E-value=4.7e-09 Score=95.49 Aligned_cols=91 Identities=23% Similarity=0.219 Sum_probs=61.9
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+..+.+|+.+|+|.|++.. .|+ .+-.+++|+.|+||+|.++ .+--..+...+|++|++|.|+++. +|. .+.
T Consensus 217 sld~l~NL~dvDlS~N~Lp~-vPe----cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~-avc 288 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLPI-VPE----CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPD-AVC 288 (1255)
T ss_pred chhhhhhhhhccccccCCCc-chH----HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chH-HHh
Confidence 34455667777777777776 566 6777777777777777776 344444555677777777777776 776 677
Q ss_pred CCCCCCEEeccCCcCCCCC
Q 027045 201 NLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~~ 219 (229)
++++|+.|++.+|+++-.+
T Consensus 289 KL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred hhHHHHHHHhccCcccccC
Confidence 7777777777777665443
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.51 E-value=2.8e-07 Score=87.60 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=55.9
Q ss_pred CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (229)
Q Consensus 127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 206 (229)
+|+.|++++|+|++ +|. . .++|+.|++++|+++. +|.. ..+|+.|++++|+++. +|. .+.++++|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~----l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~-sl~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPV----L---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPE-SLIHLSSET 448 (788)
T ss_pred ccceEEecCCcccC-CCC----c---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cCh-HHhhccCCC
Confidence 45666666666665 332 2 2467777777777773 5543 2467788888888886 887 788999999
Q ss_pred EEeccCCcCCCC
Q 027045 207 VLDLSGNFNITS 218 (229)
Q Consensus 207 ~L~L~~N~l~~~ 218 (229)
.|++++|+|++.
T Consensus 449 ~LdLs~N~Ls~~ 460 (788)
T PRK15387 449 TVNLEGNPLSER 460 (788)
T ss_pred eEECCCCCCCch
Confidence 999999999875
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=2.1e-08 Score=84.22 Aligned_cols=96 Identities=29% Similarity=0.297 Sum_probs=78.5
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
......|+.+|||+|.|+.+ .. +..-.|.++.|++|+|.+.. -+.+..+++|+.||||+|.++. +.. +-.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~i-DE----SvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~-~~G-wh~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI-DE----SVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAE-CVG-WHLK 350 (490)
T ss_pred cchHhhhhhccccccchhhh-hh----hhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHh-hhh-hHhh
Confidence 34456799999999999984 44 67778999999999999982 3448899999999999999987 654 6678
Q ss_pred CCCCCEEeccCCcCCCCCCcccCCC
Q 027045 202 LRYLQVLDLSGNFNITSGSLTRLGR 226 (229)
Q Consensus 202 l~~L~~L~L~~N~l~~~~~~~~l~~ 226 (229)
+.+++.|.|+.|.+.....+.+|-+
T Consensus 351 LGNIKtL~La~N~iE~LSGL~KLYS 375 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLSGLRKLYS 375 (490)
T ss_pred hcCEeeeehhhhhHhhhhhhHhhhh
Confidence 9999999999999887665555443
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.45 E-value=1.7e-08 Score=94.93 Aligned_cols=90 Identities=29% Similarity=0.316 Sum_probs=76.3
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+.++++|+.|+|++|++...... .+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++.. +| .+.
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP--e~~ 449 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP--ELA 449 (1081)
T ss_pred hhccccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch--hhh
Confidence 466788899999999998874444 6788888999999999998 688888888999999999999886 77 488
Q ss_pred CCCCCCEEeccCCcCCCC
Q 027045 201 NLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~ 218 (229)
.++.|+.+|++.|+++..
T Consensus 450 ~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hcCcceEEecccchhhhh
Confidence 999999999999998876
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.42 E-value=2.5e-07 Score=55.97 Aligned_cols=38 Identities=37% Similarity=0.357 Sum_probs=21.8
Q ss_pred CccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 179 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+|++|++++|+|+. +|. .++++++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~-l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS-HGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc-cCc-hHhCCCCCCEEEecCCCCCCC
Confidence 45666666666664 554 466666666666666666543
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.41 E-value=9.2e-07 Score=84.13 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=42.8
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 205 (229)
++|+.|++++|+++. +|. .+. .+|+.|++++|.++ .+|..+. .+|+.|++++|+++. +|. .+. ++|
T Consensus 220 ~nL~~L~Ls~N~Lts-LP~----~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~-~l~--~sL 285 (754)
T PRK15370 220 GNIKTLYANSNQLTS-IPA----TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPE-NLP--EEL 285 (754)
T ss_pred cCCCEEECCCCcccc-CCh----hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccc-ccC--CCC
Confidence 356666777666665 343 322 34566666666655 3444432 356666666666654 554 232 356
Q ss_pred CEEeccCCcCCCC
Q 027045 206 QVLDLSGNFNITS 218 (229)
Q Consensus 206 ~~L~L~~N~l~~~ 218 (229)
++|++++|+|++.
T Consensus 286 ~~L~Ls~N~Lt~L 298 (754)
T PRK15370 286 RYLSVYDNSIRTL 298 (754)
T ss_pred cEEECCCCccccC
Confidence 6666666655543
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.30 E-value=1.8e-06 Score=82.11 Aligned_cols=86 Identities=26% Similarity=0.167 Sum_probs=47.8
Q ss_pred CCCcEEeCCCCcCCCccccccccccC-----------------CCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFG-----------------SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~-----------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 188 (229)
++|++|++++|+|+. +|. .+. .+..|+.|++++|+++ .+|. .+++|+.|++++|
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~----lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N 312 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDN 312 (788)
T ss_pred CCCcEEEecCCccCc-ccC----cccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCC
Confidence 567777777777775 332 110 1134555566666665 3443 2356788888888
Q ss_pred cCCCCCChhhcCC-------------C----CCCCEEeccCCcCCCCCCcc
Q 027045 189 SIEGSRTKQGLAN-------------L----RYLQVLDLSGNFNITSGSLT 222 (229)
Q Consensus 189 ~l~~~ip~~~~~~-------------l----~~L~~L~L~~N~l~~~~~~~ 222 (229)
++++ +|. .... + .+|++|++++|+|++++.++
T Consensus 313 ~L~~-Lp~-lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp 361 (788)
T PRK15387 313 QLAS-LPA-LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLP 361 (788)
T ss_pred cccc-CCC-CcccccccccccCccccccccccccceEecCCCccCCCCCCC
Confidence 8776 543 1111 1 25666667666666655443
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.27 E-value=2.7e-07 Score=78.72 Aligned_cols=91 Identities=27% Similarity=0.323 Sum_probs=43.0
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCC----CChh
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS----RTKQ 197 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~ 197 (229)
++|+.|++++|.+++.........+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. +..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~- 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE- 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-
Confidence 55666666666665321110001344445566666666655531 222233444566666666555431 111
Q ss_pred hcCCCCCCCEEeccCCcCCC
Q 027045 198 GLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 198 ~~~~l~~L~~L~L~~N~l~~ 217 (229)
.+..+++|++|++++|.+++
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HhcccCCCCEEecCCCcCch
Confidence 23445556666666555553
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.27 E-value=2.2e-07 Score=79.21 Aligned_cols=116 Identities=23% Similarity=0.244 Sum_probs=80.3
Q ss_pred CCcEEEEecCC-CccccccCCCCCccccCCcccCCC---CCCcEEeCCCCcCCCccccccccccCCC-CCCcEEEcCCCC
Q 027045 91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPF---EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNF 165 (229)
Q Consensus 91 ~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~ 165 (229)
..+++.|++++ .+.+.. ...+..+ ++|++|++++|++++.........+..+ ++|+.|++++|.
T Consensus 80 ~~~L~~L~l~~~~~~~~~-----------~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 80 GCGLQELDLSDNALGPDG-----------CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred cCceeEEEccCCCCChhH-----------HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 34789999988 665411 1122222 5599999999999842111000145566 899999999999
Q ss_pred CCCC----CcccccCCCCccEEeccCCcCCCC----CChhhcCCCCCCCEEeccCCcCCCC
Q 027045 166 FNDS----ILPYLNTLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 166 l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+++. ++..+..+.+|++|++++|.+++. ++. .+..+++|++|++++|.+++.
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChH
Confidence 9853 233466778999999999999842 222 355667999999999998754
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=4.8e-06 Score=83.21 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=57.4
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+.++++|+.|++++|..-+.+|. .+ .+++|+.|++++|..-..+|.. ..+|+.|+|++|.++. +|. .+.
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~-si~ 866 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPW-WIE 866 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChH-HHh
Confidence 466777777787777654444564 33 5677777777765433334432 2567777888887776 776 677
Q ss_pred CCCCCCEEeccC-CcCCCC
Q 027045 201 NLRYLQVLDLSG-NFNITS 218 (229)
Q Consensus 201 ~l~~L~~L~L~~-N~l~~~ 218 (229)
.+++|+.|++++ |++..+
T Consensus 867 ~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred cCCCCCEEECCCCCCcCcc
Confidence 788888888877 455554
No 32
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=9.3e-07 Score=53.47 Aligned_cols=36 Identities=39% Similarity=0.557 Sum_probs=15.6
Q ss_pred CCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCC
Q 027045 155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE 191 (229)
Q Consensus 155 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 191 (229)
+|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.22 E-value=7.4e-06 Score=81.89 Aligned_cols=87 Identities=21% Similarity=0.033 Sum_probs=38.2
Q ss_pred CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 202 (229)
..+++|+.|++++|..-..+|. .+..+++|+.|++++|..-..+|..+ ++++|+.|++++|...+.+|. ..
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~ 724 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----IS 724 (1153)
T ss_pred ccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----cc
Confidence 3344445555544433333444 44445555555555433222344332 344455555544433222332 12
Q ss_pred CCCCEEeccCCcCCCC
Q 027045 203 RYLQVLDLSGNFNITS 218 (229)
Q Consensus 203 ~~L~~L~L~~N~l~~~ 218 (229)
.+|+.|++++|.+...
T Consensus 725 ~nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 725 TNISWLDLDETAIEEF 740 (1153)
T ss_pred CCcCeeecCCCccccc
Confidence 3455555555555443
No 34
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=9.8e-08 Score=88.17 Aligned_cols=95 Identities=28% Similarity=0.332 Sum_probs=75.5
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc-ccCCCCccEEeccCCcCCCCCChhhc
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
.+.-++.++.|||+.|+++... .+..+++|++|||++|.++ .+|.- ...+ .|+.|++++|.++. +- .+
T Consensus 182 SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t-L~--gi 250 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT-LR--GI 250 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh-hh--hH
Confidence 3455788999999999999853 6788999999999999998 56652 2233 49999999999987 43 58
Q ss_pred CCCCCCCEEeccCCcCCCCCCcccCCC
Q 027045 200 ANLRYLQVLDLSGNFNITSGSLTRLGR 226 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~~~~~~l~~ 226 (229)
.++.+|+.||+++|-|.+..++..|+.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLws 277 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWS 277 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHH
Confidence 899999999999999988766555443
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.05 E-value=2.4e-06 Score=75.44 Aligned_cols=79 Identities=33% Similarity=0.399 Sum_probs=32.5
Q ss_pred CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (229)
Q Consensus 127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 206 (229)
+|+.|++++|++.. +|. .+..++.|+.|++++|+++ .+|...+.+++|+.|++++|+++. +|. ..+....|+
T Consensus 141 nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~-~~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPP-EIELLSALE 212 (394)
T ss_pred hcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-Cch-hhhhhhhhh
Confidence 44444444444444 222 3344444444444444444 233333334444444444444443 433 222333344
Q ss_pred EEeccCC
Q 027045 207 VLDLSGN 213 (229)
Q Consensus 207 ~L~L~~N 213 (229)
.+.+++|
T Consensus 213 ~l~~~~N 219 (394)
T COG4886 213 ELDLSNN 219 (394)
T ss_pred hhhhcCC
Confidence 4444444
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=1.5e-06 Score=77.52 Aligned_cols=89 Identities=35% Similarity=0.370 Sum_probs=59.1
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
+..+++|+.|++.+|+|.++.. .+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++. +. .+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLES 160 (414)
T ss_pred cccccceeeeeccccchhhccc-----chhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCcc
Confidence 5566777777777777777432 256677777777777777632 224556667777777777776 54 3556
Q ss_pred CCCCCEEeccCCcCCCCCC
Q 027045 202 LRYLQVLDLSGNFNITSGS 220 (229)
Q Consensus 202 l~~L~~L~L~~N~l~~~~~ 220 (229)
+.+|+.+++++|.+..+..
T Consensus 161 l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred chhhhcccCCcchhhhhhh
Confidence 7777777777777766544
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=4.4e-07 Score=68.15 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=36.4
Q ss_pred CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
.++.++.|++++|.|+. +|. ++..++.|+.|+++.|.+. ..|..+..+.++..|+..+|.+.. +|.
T Consensus 75 kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~ 140 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDV 140 (177)
T ss_pred ccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcH
Confidence 34455555666666655 444 5555556666666666555 445544445555555555555543 544
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.99 E-value=3.7e-06 Score=74.26 Aligned_cols=92 Identities=38% Similarity=0.381 Sum_probs=78.4
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCC-CCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK-QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
.+..++.++.|++.+|+++.+ ++ ....+. +|+.|++++|.+. .+|..++.+++|+.|++++|+++. +|. ..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i-~~----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~-~~ 182 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDI-PP----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPK-LL 182 (394)
T ss_pred hhhcccceeEEecCCcccccC-cc----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhh-hh
Confidence 345567899999999999995 44 566664 9999999999998 677778999999999999999998 876 45
Q ss_pred CCCCCCCEEeccCCcCCCCCC
Q 027045 200 ANLRYLQVLDLSGNFNITSGS 220 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~~~ 220 (229)
...++|+.|++++|+++.++.
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred hhhhhhhheeccCCccccCch
Confidence 588999999999999998854
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.4e-05 Score=63.80 Aligned_cols=89 Identities=27% Similarity=0.215 Sum_probs=47.4
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC-CcccccCCCCccEEeccCCcCCCCC--Ch
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS-ILPYLNTLTSLTTLILSDNSIEGSR--TK 196 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~i--p~ 196 (229)
..|..++.|..|.+++|+|+.+.|. --..+++|+.|.|.+|.+... .-..+..+++|++|.+-+|..+..- -.
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~ 133 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL 133 (233)
T ss_pred ccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee
Confidence 3455666666666666666665553 223345566666666665421 1123455666666666666655310 01
Q ss_pred hhcCCCCCCCEEeccC
Q 027045 197 QGLANLRYLQVLDLSG 212 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~ 212 (229)
..+..+++|+.||.++
T Consensus 134 yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQK 149 (233)
T ss_pred EEEEecCcceEeehhh
Confidence 1345566666666543
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.4e-06 Score=74.97 Aligned_cols=98 Identities=28% Similarity=0.231 Sum_probs=68.9
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc--ccccCCCCccEEeccCCcCCCC-CChh-
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL--PYLNTLTSLTTLILSDNSIEGS-RTKQ- 197 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~-ip~~- 197 (229)
...+|.|+.|+|..|..-..... ....+..|+.|||++|.+-. .+ ...+.++.|..|+++.+.+... +|+.
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~ 292 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE 292 (505)
T ss_pred HHhCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCcc
Confidence 44678888888888864333333 45567789999999988763 33 4567888888899988888751 2221
Q ss_pred ---hcCCCCCCCEEeccCCcCCCCCCcccC
Q 027045 198 ---GLANLRYLQVLDLSGNFNITSGSLTRL 224 (229)
Q Consensus 198 ---~~~~l~~L~~L~L~~N~l~~~~~~~~l 224 (229)
....+++|++|++..|++..+..+.++
T Consensus 293 s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred chhhhcccccceeeecccCccccccccchh
Confidence 124678899999999999887655443
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.87 E-value=1.6e-06 Score=78.28 Aligned_cols=89 Identities=27% Similarity=0.286 Sum_probs=73.7
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.++.+..|..||.+.|.+.. +|. .++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++. ||. .|.
T Consensus 161 ~ig~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~-iPv-~fr 231 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISY-LPV-DFR 231 (722)
T ss_pred ccccchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceee-cch-hhh
Confidence 45566778888888888877 454 7888888888888888887 577777744 58889999999998 998 899
Q ss_pred CCCCCCEEeccCCcCCCC
Q 027045 201 NLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~ 218 (229)
+|+.|++|-|.+|.+...
T Consensus 232 ~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhheeeeeccCCCCCC
Confidence 999999999999999876
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.84 E-value=6.8e-06 Score=79.54 Aligned_cols=89 Identities=29% Similarity=0.303 Sum_probs=71.1
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..|..++.|+.|||++|.=-+.+|. .++.+-+|++|+++...++ .+|..++++.+|.+|++..+.-...+|. ..
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~ 638 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-IL 638 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hh
Confidence 3478889999999998776666887 8888999999999998888 7888899999999999887775543554 56
Q ss_pred CCCCCCCEEeccCCc
Q 027045 200 ANLRYLQVLDLSGNF 214 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~ 214 (229)
..+.+|++|.+..-.
T Consensus 639 ~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccEEEeeccc
Confidence 668889988886654
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=5.2e-06 Score=74.14 Aligned_cols=96 Identities=35% Similarity=0.444 Sum_probs=79.0
Q ss_pred CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 202 (229)
..+..++.+++..|.+.... . .+..+++|+.|++.+|.+.. +...+..+++|++|++++|+|+. +. .+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~-~----~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~-i~--~l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKIL-N----HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK-LE--GLSTL 139 (414)
T ss_pred HHhHhHHhhccchhhhhhhh-c----ccccccceeeeeccccchhh-cccchhhhhcchheecccccccc-cc--chhhc
Confidence 35677888889999998733 2 58889999999999999983 44447889999999999999998 64 47788
Q ss_pred CCCCEEeccCCcCCCCCCcccCCCC
Q 027045 203 RYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 203 ~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
+.|+.|++.+|.++.+..+..+.+|
T Consensus 140 ~~L~~L~l~~N~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDISGLESLKSL 164 (414)
T ss_pred cchhhheeccCcchhccCCccchhh
Confidence 8899999999999998777655544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=4.8e-07 Score=83.75 Aligned_cols=106 Identities=28% Similarity=0.268 Sum_probs=79.4
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
.+..|+|+. ++.. ...+..+++|++|||++|++.. +|.. ...++. |+.|.+++|.++. -
T Consensus 188 ale~LnLshNk~~~-------------v~~Lr~l~~LkhLDlsyN~L~~-vp~l---~~~gc~-L~~L~lrnN~l~t--L 247 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTK-------------VDNLRRLPKLKHLDLSYNCLRH-VPQL---SMVGCK-LQLLNLRNNALTT--L 247 (1096)
T ss_pred Hhhhhccchhhhhh-------------hHHHHhcccccccccccchhcc-cccc---chhhhh-heeeeecccHHHh--h
Confidence 355666766 5543 3367889999999999999998 4530 334454 9999999999983 3
Q ss_pred ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
..+.++.+|+.||+++|-+.+.---..++.+..|+.|+|.+|++..-
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 45778999999999999998732222466788899999999987653
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.78 E-value=1.5e-06 Score=78.59 Aligned_cols=96 Identities=26% Similarity=0.291 Sum_probs=53.3
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC--------
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG-------- 192 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-------- 192 (229)
.+.++..|++|||+.|+++. .|. .+..|+ |+.|-+++|+++ .+|+.++.+..|..||.+.|++..
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~-lp~----~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSH-LPD----GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred hhhhhhHHHHhhhccchhhc-CCh----hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence 45566667777777777766 344 455454 555555666555 455555555555555555555544
Q ss_pred --------------CCChhhcCCCCCCCEEeccCCcCCCCC-CcccCC
Q 027045 193 --------------SRTKQGLANLRYLQVLDLSGNFNITSG-SLTRLG 225 (229)
Q Consensus 193 --------------~ip~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~ 225 (229)
.+|. .+..+ .|..||++.|+++.++ .|.++.
T Consensus 189 ~slr~l~vrRn~l~~lp~-El~~L-pLi~lDfScNkis~iPv~fr~m~ 234 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPE-ELCSL-PLIRLDFSCNKISYLPVDFRKMR 234 (722)
T ss_pred HHHHHHHHhhhhhhhCCH-HHhCC-ceeeeecccCceeecchhhhhhh
Confidence 0444 34422 3566777777777663 344433
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=4.5e-05 Score=60.89 Aligned_cols=87 Identities=28% Similarity=0.290 Sum_probs=70.7
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 205 (229)
.+...+||++|.+... + .|..++.|.+|.+++|+|+...|.--.-+++|..|.|.+|+|...-.-..+..+++|
T Consensus 42 d~~d~iDLtdNdl~~l-~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-D-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhc-c-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 3567899999999873 3 688899999999999999966666445568899999999999852222247789999
Q ss_pred CEEeccCCcCCCC
Q 027045 206 QVLDLSGNFNITS 218 (229)
Q Consensus 206 ~~L~L~~N~l~~~ 218 (229)
++|.+-+|+++..
T Consensus 116 ~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 116 EYLTLLGNPVEHK 128 (233)
T ss_pred ceeeecCCchhcc
Confidence 9999999998776
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.69 E-value=2.5e-06 Score=64.15 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=75.5
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccC-CCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
+....+|+..+|++|.+... |. .|. .++..+.+++++|.++ .+|..+..++.|+.|+++.|.+.. .|. .+.
T Consensus 49 l~~~~el~~i~ls~N~fk~f-p~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~-vi~ 120 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKF-PK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPR-VIA 120 (177)
T ss_pred HhCCceEEEEecccchhhhC-CH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chH-HHH
Confidence 44567888899999999984 44 454 5568999999999999 689889999999999999999997 776 677
Q ss_pred CCCCCCEEeccCCcCCCC
Q 027045 201 NLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~ 218 (229)
.+.++..|+..+|.+..+
T Consensus 121 ~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 121 PLIKLDMLDSPENARAEI 138 (177)
T ss_pred HHHhHHHhcCCCCccccC
Confidence 799999999999987766
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=5.2e-06 Score=72.87 Aligned_cols=95 Identities=27% Similarity=0.219 Sum_probs=45.9
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc-cccCCCCccEEeccCCcCCCCCChhh
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
.....|++|+.|+++.|++.-..... .-..+++|+.|.++.+.++...-. .+..+++|+.|+|..|.... +-...
T Consensus 166 ~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~ 241 (505)
T KOG3207|consen 166 KIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATS 241 (505)
T ss_pred HHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecch
Confidence 34567788888888888876533320 112345566666666665532211 12234555555555553211 11112
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
...+..|+.|||++|++-..
T Consensus 242 ~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred hhhhhHHhhccccCCccccc
Confidence 23344455555555544333
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.50 E-value=4.4e-05 Score=74.01 Aligned_cols=84 Identities=31% Similarity=0.294 Sum_probs=72.4
Q ss_pred CCCCcEEeCCCCc--CCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045 125 FEELQRLDLPGNW--FTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (229)
Q Consensus 125 l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 202 (229)
.+.|+.|-+..|. +...... .|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..++. +|. .++++
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~-~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPS-GLGNL 617 (889)
T ss_pred CCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cch-HHHHH
Confidence 4478889888886 5543443 58889999999999987666899999999999999999999996 998 89999
Q ss_pred CCCCEEeccCCc
Q 027045 203 RYLQVLDLSGNF 214 (229)
Q Consensus 203 ~~L~~L~L~~N~ 214 (229)
..|.+|++..+.
T Consensus 618 k~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 618 KKLIYLNLEVTG 629 (889)
T ss_pred Hhhheecccccc
Confidence 999999999875
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.43 E-value=9e-05 Score=61.15 Aligned_cols=84 Identities=30% Similarity=0.364 Sum_probs=53.4
Q ss_pred CcccCCCCCCcEEeCCCC--cCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc---ccCCCCccEEeccCCcCCCC
Q 027045 119 MSLFHPFEELQRLDLPGN--WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY---LNTLTSLTTLILSDNSIEGS 193 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~ 193 (229)
...|..+++|+.|.++.| ++++-.+. -...+++|++|+++.|++.. +.. +..+.+|..|++.+|..+.
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~- 130 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN- 130 (260)
T ss_pred cccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc-
Confidence 345667778888888888 55554443 34455888888888888762 333 3455667777887777665
Q ss_pred CCh---hhcCCCCCCCEEe
Q 027045 194 RTK---QGLANLRYLQVLD 209 (229)
Q Consensus 194 ip~---~~~~~l~~L~~L~ 209 (229)
... ..|.-+++|++||
T Consensus 131 l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 131 LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cccHHHHHHHHhhhhcccc
Confidence 221 1355567777665
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00075 Score=55.79 Aligned_cols=88 Identities=28% Similarity=0.293 Sum_probs=67.1
Q ss_pred CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC--CCCCCCcccccCCCCccEEeccCCcCCC--CCChhh
Q 027045 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN--FFNDSILPYLNTLTSLTTLILSDNSIEG--SRTKQG 198 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~~ 198 (229)
..+..|+.|.+.+-.++... .|-.+++|++|.++.| ++++.++.....+++|++++++.|++.. .++ .
T Consensus 40 d~~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--p 111 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--P 111 (260)
T ss_pred ccccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--h
Confidence 34566777777776666532 6778999999999999 6666666666677999999999999873 233 3
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..+.+|..|++.++..+..
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred hhhhcchhhhhcccCCcccc
Confidence 66788899999999877765
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=5.1e-05 Score=63.48 Aligned_cols=84 Identities=30% Similarity=0.354 Sum_probs=63.8
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc--ccccCCCCccEEeccCCcCCCCCCh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL--PYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
.++..+++.|+.|.||-|.|+... .+..+++|++|+|..|.|.. +. ..+.++++|+.|.|..|.-.|.-+.
T Consensus 34 Isic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 34 ISICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred HHHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccch
Confidence 345677889999999999999854 47789999999999999873 33 3567899999999999987764332
Q ss_pred h----hcCCCCCCCEEe
Q 027045 197 Q----GLANLRYLQVLD 209 (229)
Q Consensus 197 ~----~~~~l~~L~~L~ 209 (229)
. .+.-+++|+.||
T Consensus 107 nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 107 NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHHHHHHHHcccchhcc
Confidence 1 255678888775
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.71 E-value=0.0059 Score=44.78 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=59.4
Q ss_pred cEEEEecCCCccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc
Q 027045 93 RVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP 172 (229)
Q Consensus 93 ~v~~L~L~~~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 172 (229)
+++.+.+...+. .+....|...++|+.+++.++ +..+... .|..++.++.+.+.+ .+......
T Consensus 13 ~l~~i~~~~~~~-----------~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 13 NLESITFPNTIK-----------KIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp T--EEEETST-------------EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TT
T ss_pred CCCEEEECCCee-----------EeChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccc
Confidence 466676665333 255677888888999999875 7765555 788888899999976 44323445
Q ss_pred cccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccC
Q 027045 173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSG 212 (229)
Q Consensus 173 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~ 212 (229)
.|..+++|+.+++..+ +.. ++...|.++ +|+.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc-ccE-EchhhhcCC-CceEEEECC
Confidence 6777899999999765 554 555577777 888888765
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.56 E-value=0.0013 Score=62.46 Aligned_cols=90 Identities=28% Similarity=0.303 Sum_probs=64.4
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCC-CCcccccCCCCccEEeccCCcCCCCCC---h
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILSDNSIEGSRT---K 196 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip---~ 196 (229)
...++++|+.||+|+.+++.. . .++.+++|+.|.+.+=.+.. ..-..+.++++|++||+|...... .+ .
T Consensus 168 lc~sFpNL~sLDIS~TnI~nl--~----GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~ 240 (699)
T KOG3665|consen 168 LCASFPNLRSLDISGTNISNL--S----GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIE 240 (699)
T ss_pred HhhccCccceeecCCCCccCc--H----HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHH
Confidence 356789999999999998875 3 78888899988888766652 222356788999999998776554 22 1
Q ss_pred hh---cCCCCCCCEEeccCCcCCC
Q 027045 197 QG---LANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 197 ~~---~~~l~~L~~L~L~~N~l~~ 217 (229)
.. -..+|+|+.||.+++.+.+
T Consensus 241 qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 241 QYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHHhcccCccccEEecCCcchhH
Confidence 11 2248899999998876654
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00084 Score=56.85 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCC
Q 027045 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213 (229)
Q Consensus 151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N 213 (229)
.++|.|+.|+++.|.+...+-..-....+|++|.|.+..+.-.-....+..+|.++.|+++.|
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 345555555555555442221111233344444444443331111112334444444444444
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.44 E-value=0.0086 Score=43.88 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=58.2
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
+....|.+.++|+.+.+.. .+..+... .|..+++|+.+.+..+ +.......|.++.+++.+.+.+ .+.. ++.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~ 74 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGD 74 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-T
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeecccccccccccc-cccc-ccc
Confidence 3456788889999999985 67776566 8999999999999886 6644556788888999999976 5544 555
Q ss_pred hhcCCCCCCCEEeccCC
Q 027045 197 QGLANLRYLQVLDLSGN 213 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N 213 (229)
..|..+++|+.+++..+
T Consensus 75 ~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TTTTT-TTECEEEETTT
T ss_pred ccccccccccccccCcc
Confidence 57888999999999765
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.27 E-value=0.0006 Score=58.58 Aligned_cols=96 Identities=27% Similarity=0.246 Sum_probs=63.2
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccc-----cCCCCccEEeccCCcCCCCC-
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-----NTLTSLTTLILSDNSIEGSR- 194 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~i- 194 (229)
.|..+++|+.|||.+|-|+..-....-..+..+++|+.|+++++.+...-...+ ...++|++|.+.+|.++..-
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 466788888888888888753221011146667788888888888764322222 24678888888888887411
Q ss_pred --ChhhcCCCCCCCEEeccCCcCC
Q 027045 195 --TKQGLANLRYLQVLDLSGNFNI 216 (229)
Q Consensus 195 --p~~~~~~l~~L~~L~L~~N~l~ 216 (229)
-...+...+.|..|+|++|.+.
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHhcchhhHHhcCCccccc
Confidence 0112445778888888888883
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0012 Score=55.99 Aligned_cols=85 Identities=25% Similarity=0.222 Sum_probs=60.0
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
+|.++||.+ .++. ++.....+.++|+|+.|+++.|++...+.. .-..+.+|+.|-|.+..+.+...
T Consensus 72 ~v~elDL~~N~iSd---------WseI~~ile~lP~l~~LNls~N~L~s~I~~----lp~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 72 DVKELDLTGNLISD---------WSEIGAILEQLPALTTLNLSCNSLSSDIKS----LPLPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred hhhhhhcccchhcc---------HHHHHHHHhcCccceEeeccCCcCCCcccc----CcccccceEEEEEcCCCCChhhh
Confidence 577777777 4442 222335678899999999999999886653 22456788888888888765444
Q ss_pred c-cccCCCCccEEeccCCcC
Q 027045 172 P-YLNTLTSLTTLILSDNSI 190 (229)
Q Consensus 172 ~-~l~~l~~L~~L~Ls~N~l 190 (229)
. .+..++.++.|+++.|.+
T Consensus 139 ~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hhhhhcchhhhhhhhccchh
Confidence 3 456778888888888844
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.93 E-value=0.0056 Score=58.23 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=60.6
Q ss_pred CCCCCcEEeCCCCcCCCc-cccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045 124 PFEELQRLDLPGNWFTGI-YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (229)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 202 (229)
-||+|+.|.+++-.+... .-. ...++++|..||+|+..++.. ..++.+++|+.|.+.+=.+..--.-..+.++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~----lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQ----LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecchhHHH----HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 467788888777666432 122 456788889999998888732 6678888888888776666531111246688
Q ss_pred CCCCEEeccCCcCCC
Q 027045 203 RYLQVLDLSGNFNIT 217 (229)
Q Consensus 203 ~~L~~L~L~~N~l~~ 217 (229)
++|++||+|......
T Consensus 220 ~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 220 KKLRVLDISRDKNND 234 (699)
T ss_pred cCCCeeecccccccc
Confidence 999999998865443
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.88 E-value=0.0024 Score=32.36 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=4.1
Q ss_pred cEEeccCCcCC
Q 027045 181 TTLILSDNSIE 191 (229)
Q Consensus 181 ~~L~Ls~N~l~ 191 (229)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.73 E-value=0.02 Score=51.08 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCcEEeCCC-CcCCCccccccccccCCCCCCcEEEcCCC-CCCCCCcccccCCCCccEEeccCCcC
Q 027045 127 ELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDSILPYLNTLTSLTTLILSDNSI 190 (229)
Q Consensus 127 ~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l 190 (229)
+|+.|++++ ++++. +|. .+ .++|++|++++| .+. .+|. +|+.|+++.|..
T Consensus 73 sLtsL~Lsnc~nLts-LP~----~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 73 ELTEITIENCNNLTT-LPG----SI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSAT 124 (426)
T ss_pred CCcEEEccCCCCccc-CCc----hh--hhhhhheEccCccccc-cccc------ccceEEeCCCCC
Confidence 588888876 44433 454 33 357888888887 454 3443 466677766654
No 62
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.72 E-value=0.00018 Score=58.81 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=37.1
Q ss_pred CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCC
Q 027045 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY 204 (229)
Q Consensus 125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 204 (229)
+...+.||++.|++... .. .|+-++.|..|+++.|.+. ..|..++....+..+++..|..+. .|. .++..+.
T Consensus 41 ~kr~tvld~~s~r~vn~-~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~-s~~k~~~ 112 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-GK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPK-SQKKEPH 112 (326)
T ss_pred cceeeeehhhhhHHHhh-cc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCc-cccccCC
Confidence 34444444444444431 11 3444444444555544444 344444444444444444444443 443 4444444
Q ss_pred CCEEeccCCc
Q 027045 205 LQVLDLSGNF 214 (229)
Q Consensus 205 L~~L~L~~N~ 214 (229)
++++++-+|.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 4444444443
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0058 Score=30.91 Aligned_cols=16 Identities=44% Similarity=0.547 Sum_probs=8.8
Q ss_pred CcEEeCCCCcCCCcccc
Q 027045 128 LQRLDLPGNWFTGIYEN 144 (229)
Q Consensus 128 L~~L~Ls~N~l~~~~p~ 144 (229)
|++||+++|+|+ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 455666666555 3444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.0006 Score=57.22 Aligned_cols=85 Identities=28% Similarity=0.285 Sum_probs=68.6
Q ss_pred CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh-hhcCCCC
Q 027045 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLR 203 (229)
Q Consensus 125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~ 203 (229)
+.+.+.|++=++.++.+ . ....++.|+.|.||-|+++. -..+..|++|+.|+|..|.|.. +.+ ..+.+++
T Consensus 18 l~~vkKLNcwg~~L~DI-s-----ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-S-----ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIES-LDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHH-H-----HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhccccc-HHHHHHHhcCc
Confidence 45677788888888874 2 46689999999999999984 3447899999999999999987 532 2467899
Q ss_pred CCCEEeccCCcCCCC
Q 027045 204 YLQVLDLSGNFNITS 218 (229)
Q Consensus 204 ~L~~L~L~~N~l~~~ 218 (229)
+|+.|-|..|.=.+.
T Consensus 89 sLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGE 103 (388)
T ss_pred hhhhHhhccCCcccc
Confidence 999999999986665
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.37 E-value=0.02 Score=48.22 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=31.5
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN 167 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 167 (229)
.+.++++|+..+||+|.|....|....+.++.-+.|.+|.+++|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 45677888888888888876666522234555666777777777664
No 66
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.31 E-value=0.005 Score=53.07 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=9.7
Q ss_pred CCCCCCcEEeCCCCcCCC
Q 027045 123 HPFEELQRLDLPGNWFTG 140 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~ 140 (229)
..-+.|+++..+.|++..
T Consensus 154 ~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CCCcceEEEEeecccccc
Confidence 344556666666665543
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.83 E-value=0.092 Score=46.87 Aligned_cols=74 Identities=23% Similarity=0.208 Sum_probs=45.3
Q ss_pred CCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCCCC--CCCcccccCC------------------CCccEEe
Q 027045 126 EELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFN--DSILPYLNTL------------------TSLTTLI 184 (229)
Q Consensus 126 ~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l------------------~~L~~L~ 184 (229)
++|++|++++| .+.. +|. .|+.|+++.|... +.+|..+..+ ++|++|+
T Consensus 94 ~nLe~L~Ls~Cs~L~s-LP~----------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~ 162 (426)
T PRK15386 94 EGLEKLTVCHCPEISG-LPE----------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLS 162 (426)
T ss_pred hhhhheEccCcccccc-ccc----------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEE
Confidence 57999999998 5554 554 3566666655431 1344433222 3678888
Q ss_pred ccCCcCCCCCChhhcCCCCCCCEEeccCCc
Q 027045 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNF 214 (229)
Q Consensus 185 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 214 (229)
+++|.... +|. .+. .+|++|+++.|.
T Consensus 163 Is~c~~i~-LP~-~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 163 LTGCSNII-LPE-KLP--ESLQSITLHIEQ 188 (426)
T ss_pred ecCCCccc-Ccc-ccc--ccCcEEEecccc
Confidence 88777554 443 232 478888887763
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.43 E-value=0.022 Score=47.97 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCcEEEEecCCCccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccc-------cccccCCCCCCcEEEcCC
Q 027045 91 TRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR-------AYDSFGSLKQLKMLNLGD 163 (229)
Q Consensus 91 ~~~v~~L~L~~~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-------~~~~~~~l~~L~~L~Ls~ 163 (229)
...+++++|+++-.|+=.. .--...+.+-.+|+..+++.-. +|..-++ ..+.+..+++|+..+||.
T Consensus 29 ~d~~~evdLSGNtigtEA~------e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAM------EELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred hcceeEEeccCCcccHHHH------HHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 3467888888843331000 0001224455677777776543 3322211 113567889999999999
Q ss_pred CCCCCCCcccc----cCCCCccEEeccCCcCCCCCChhhcC-------------CCCCCCEEeccCCcCCCC
Q 027045 164 NFFNDSILPYL----NTLTSLTTLILSDNSIEGSRTKQGLA-------------NLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 164 N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~ip~~~~~-------------~l~~L~~L~L~~N~l~~~ 218 (229)
|.|....|+.+ ++-..|.+|.+++|.+.. +....++ +-|.|+.++...|++..-
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence 99887667544 566789999999988753 4432333 356788888888887653
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.30 E-value=0.028 Score=26.51 Aligned_cols=11 Identities=55% Similarity=0.646 Sum_probs=3.2
Q ss_pred ccEEeccCCcC
Q 027045 180 LTTLILSDNSI 190 (229)
Q Consensus 180 L~~L~Ls~N~l 190 (229)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33334444333
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.0024 Score=54.20 Aligned_cols=112 Identities=19% Similarity=0.135 Sum_probs=57.0
Q ss_pred CCCcEEEEecCC--CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccc-------------------
Q 027045 90 TTRRVMQLSLNE--TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD------------------- 148 (229)
Q Consensus 90 ~~~~v~~L~L~~--~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------------------- 148 (229)
.+..+++++++. +++.. -..-.+.+++.|..|+|+.+.++...-..+-.
T Consensus 232 kN~~L~~lnlsm~sG~t~n----------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTEN----------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred ccccceeeccccccccchh----------HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 455678888877 55431 01123556677777777777665432110000
Q ss_pred ------ccCCCCCCcEEEcCCCC-CCCCCcccccCCCCccEEeccCCcCCCCCCh--hhcCCCCCCCEEeccCC
Q 027045 149 ------SFGSLKQLKMLNLGDNF-FNDSILPYLNTLTSLTTLILSDNSIEGSRTK--QGLANLRYLQVLDLSGN 213 (229)
Q Consensus 149 ------~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~~~l~~L~~L~L~~N 213 (229)
-...+++|..|||+.|. ++...-..|..++.|++|.++.+..- +|. -.+...++|.+|++.+.
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 12345566666666543 34333334555566666666555432 221 02445566666665543
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.90 E-value=0.061 Score=28.06 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=10.6
Q ss_pred CCccEEeccCCcCCCCCCh
Q 027045 178 TSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 178 ~~L~~L~Ls~N~l~~~ip~ 196 (229)
++|++|+|++|+++. +|.
T Consensus 2 ~~L~~L~L~~N~l~~-lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSS-LPP 19 (26)
T ss_pred CCCCEEECCCCcCCc-CCH
Confidence 455666666666655 554
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.90 E-value=0.061 Score=28.06 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=10.6
Q ss_pred CCccEEeccCCcCCCCCCh
Q 027045 178 TSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 178 ~~L~~L~Ls~N~l~~~ip~ 196 (229)
++|++|+|++|+++. +|.
T Consensus 2 ~~L~~L~L~~N~l~~-lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSS-LPP 19 (26)
T ss_pred CCCCEEECCCCcCCc-CCH
Confidence 455666666666655 554
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.0027 Score=53.92 Aligned_cols=89 Identities=24% Similarity=0.178 Sum_probs=46.4
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC-CCCCCCc-ccccCCCCccEEeccCCcCCCC------
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDSIL-PYLNTLTSLTTLILSDNSIEGS------ 193 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~------ 193 (229)
+.++.+|+.|.+.++++...+-. .+..-..|+.|+++.. .++..-. --+.+++.|..|+|+++.+..+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV 281 (419)
T ss_pred HHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence 44555666666666666655544 4555555555555543 2321111 1133445555555554443321
Q ss_pred -----------------------CChhhcCCCCCCCEEeccCCcC
Q 027045 194 -----------------------RTKQGLANLRYLQVLDLSGNFN 215 (229)
Q Consensus 194 -----------------------ip~~~~~~l~~L~~L~L~~N~l 215 (229)
+.. ....+++|.+|||+.|..
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccc
Confidence 111 234688999999988753
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.81 E-value=0.14 Score=26.63 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=7.9
Q ss_pred CCCcEEeCCCCcCCC
Q 027045 126 EELQRLDLPGNWFTG 140 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~ 140 (229)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555555
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.81 E-value=0.14 Score=26.63 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=7.9
Q ss_pred CCCcEEeCCCCcCCC
Q 027045 126 EELQRLDLPGNWFTG 140 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~ 140 (229)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555555
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.64 E-value=0.0041 Score=51.07 Aligned_cols=85 Identities=15% Similarity=0.025 Sum_probs=70.0
Q ss_pred CCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCC
Q 027045 90 TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND 168 (229)
Q Consensus 90 ~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~ 168 (229)
...+++.||++. ++.. + -.-|+-++.+..|+++.|++.. .|. .+..+..+..+++.+|.++
T Consensus 40 ~~kr~tvld~~s~r~vn-----------~-~~n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~- 101 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-----------L-GKNFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS- 101 (326)
T ss_pred ccceeeeehhhhhHHHh-----------h-ccchHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-
Confidence 356899999988 5543 1 1336667889999999999988 666 8888999999999999988
Q ss_pred CCcccccCCCCccEEeccCCcCCC
Q 027045 169 SILPYLNTLTSLTTLILSDNSIEG 192 (229)
Q Consensus 169 ~~p~~l~~l~~L~~L~Ls~N~l~~ 192 (229)
..|.+++..+.++++++..|.+..
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred hCCccccccCCcchhhhccCcchH
Confidence 789999999999999999998764
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.83 E-value=0.64 Score=24.47 Aligned_cols=16 Identities=38% Similarity=0.210 Sum_probs=8.5
Q ss_pred CCCCEEeccCCcCCCC
Q 027045 203 RYLQVLDLSGNFNITS 218 (229)
Q Consensus 203 ~~L~~L~L~~N~l~~~ 218 (229)
.+|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555544
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.34 E-value=0.57 Score=24.67 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=10.7
Q ss_pred CccEEeccCCcCCCCCCh
Q 027045 179 SLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 179 ~L~~L~Ls~N~l~~~ip~ 196 (229)
+|+.|++++|+++. +|+
T Consensus 3 ~L~~L~vs~N~Lt~-LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTS-LPE 19 (26)
T ss_pred ccceeecCCCcccc-Ccc
Confidence 46666666666665 554
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.93 E-value=0.49 Score=24.00 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=7.5
Q ss_pred CCCcEEeCCCCcCCC
Q 027045 126 EELQRLDLPGNWFTG 140 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~ 140 (229)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455666666666554
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=79.89 E-value=0.98 Score=40.33 Aligned_cols=93 Identities=26% Similarity=0.193 Sum_probs=49.4
Q ss_pred cCCCCCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCC-CCCCCccccc-CCCCccEEeccCCc-CCCCCChh
Q 027045 122 FHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLN-TLTSLTTLILSDNS-IEGSRTKQ 197 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~ip~~ 197 (229)
....+.|+.|+++++ ......+.........+++|+.|++++.. ++...-..+. .+++|+.|.+.... ++..--..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345677788887763 11111111000133455777778877766 5533333333 26778887766555 44311111
Q ss_pred hcCCCCCCCEEeccCCc
Q 027045 198 GLANLRYLQVLDLSGNF 214 (229)
Q Consensus 198 ~~~~l~~L~~L~L~~N~ 214 (229)
....+++|++|+++.+.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 34467778888887654
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.70 E-value=1.8 Score=22.97 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=8.3
Q ss_pred CCCcEEeCCCCcCC
Q 027045 126 EELQRLDLPGNWFT 139 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~ 139 (229)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666654
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.18 E-value=0.35 Score=38.99 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=14.0
Q ss_pred CCCcEEEcCCCC-CCCCCcccccCCCCccEEec
Q 027045 154 KQLKMLNLGDNF-FNDSILPYLNTLTSLTTLIL 185 (229)
Q Consensus 154 ~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L 185 (229)
++|+.|+++.|. ||..--..+..+++|+.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 445555555442 44322233344444444444
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.00 E-value=1 Score=36.34 Aligned_cols=81 Identities=25% Similarity=0.235 Sum_probs=47.6
Q ss_pred CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCC-CCCCCccccc-CCCCccEEeccCCc-CCCCCChhhcCCCC
Q 027045 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLN-TLTSLTTLILSDNS-IEGSRTKQGLANLR 203 (229)
Q Consensus 127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~ 203 (229)
.++.+|-++..|..+--+ .+..++.++.|.+.++. +...--+.++ -.++|+.|+|+.|. |+. ---..+.+++
T Consensus 102 ~IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHH----HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHhh
Confidence 456677777766553222 56666666666666654 2211112222 23789999999774 664 2222567788
Q ss_pred CCCEEeccC
Q 027045 204 YLQVLDLSG 212 (229)
Q Consensus 204 ~L~~L~L~~ 212 (229)
+|+.|++.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 888877654
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.39 E-value=3.8 Score=37.85 Aligned_cols=87 Identities=24% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCCCCCcEEeCCCCcCCCccccccccc-cCCCCCCcEEEcCCC--CCCCCCcccccCC--CCccEEeccCCcCCCCCCh-
Q 027045 123 HPFEELQRLDLPGNWFTGIYENRAYDS-FGSLKQLKMLNLGDN--FFNDSILPYLNTL--TSLTTLILSDNSIEGSRTK- 196 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~ip~- 196 (229)
.+.+.+..++|++|++-.+..- .. -...|+|..|+|++| .+. ...++..+ ..|+.|.+.+|.+....-.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~---sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDAL---SSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred cCCcceeeeecccchhhchhhh---hHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccchhhh
Confidence 4677888888999988764210 11 234578889999988 333 12223322 3578888888888753321
Q ss_pred -hhcC----CCCCCCEEeccCCcCC
Q 027045 197 -QGLA----NLRYLQVLDLSGNFNI 216 (229)
Q Consensus 197 -~~~~----~l~~L~~L~L~~N~l~ 216 (229)
..+. .+|+|..|| ++.+.
T Consensus 290 s~yv~~i~~~FPKL~~LD--G~ev~ 312 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD--GVEVQ 312 (585)
T ss_pred HHHHHHHHHhcchheeec--CcccC
Confidence 1122 567776654 44443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.09 E-value=4.6 Score=37.33 Aligned_cols=64 Identities=30% Similarity=0.276 Sum_probs=35.9
Q ss_pred CCCCCcEEEcCCCCCCCCCc-ccc-cCCCCccEEeccCC--cCCCCCChhhcCCC--CCCCEEeccCCcCCCC
Q 027045 152 SLKQLKMLNLGDNFFNDSIL-PYL-NTLTSLTTLILSDN--SIEGSRTKQGLANL--RYLQVLDLSGNFNITS 218 (229)
Q Consensus 152 ~l~~L~~L~Ls~N~l~~~~p-~~l-~~l~~L~~L~Ls~N--~l~~~ip~~~~~~l--~~L~~L~L~~N~l~~~ 218 (229)
+.+.+..+.|++|++....- ..+ ...++|..|+|++| .+.. -+ ++.++ ..|+.|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~--el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ES--ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hh--hhhhhcCCCHHHeeecCCccccc
Confidence 44566777778877752111 111 23467777888877 4433 11 23333 3467777777777654
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=49.51 E-value=11 Score=41.34 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=20.4
Q ss_pred eCCCCcCCCccccccccccCCCCCCcEEEcCCCCCC
Q 027045 132 DLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN 167 (229)
Q Consensus 132 ~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 167 (229)
||++|+|+.+.+. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g----~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEG----ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChH----HhccCCCceEEEeeCCccc
Confidence 4566666665555 5666666666666666654
No 87
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.30 E-value=12 Score=26.34 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027045 15 FSLMSLIWII 24 (229)
Q Consensus 15 ~~~~~~~~~~ 24 (229)
|+++.++|++
T Consensus 6 ~llL~l~LA~ 15 (95)
T PF07172_consen 6 FLLLGLLLAA 15 (95)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.84 E-value=13 Score=40.97 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.4
Q ss_pred EcCCCCCCCCCcccccCCCCccEEeccCCcCC
Q 027045 160 NLGDNFFNDSILPYLNTLTSLTTLILSDNSIE 191 (229)
Q Consensus 160 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 191 (229)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999666678889999999999999987
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=44.40 E-value=0.81 Score=41.85 Aligned_cols=40 Identities=35% Similarity=0.321 Sum_probs=18.2
Q ss_pred CCccEEeccCCcCCCCCCh---hhcCCCCCCCEEeccCCcCCC
Q 027045 178 TSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 178 ~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~L~~N~l~~ 217 (229)
..++.++++.|.|+..-.. ..+..++.++.+.+.+|.+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3445555555555532111 023344455555555555443
No 90
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.27 E-value=44 Score=23.48 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 027045 7 METTSFIKFSLMSLIWIIVLM 27 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (229)
|+...++.+.+++.+++++.+
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 666677777766665555443
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=32.32 E-value=2.1 Score=39.16 Aligned_cols=96 Identities=23% Similarity=0.176 Sum_probs=47.4
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCC-CCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCC---
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEG--- 192 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~--- 192 (229)
.+...+.|+.|++++|.+...--....+.+... ..|++|++..+.+++. +...+.....++.++++.|.+..
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 344556666677777766632111000012222 3455566666665532 23334445666667777776631
Q ss_pred -CCChhhcC----CCCCCCEEeccCCcCCC
Q 027045 193 -SRTKQGLA----NLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 193 -~ip~~~~~----~l~~L~~L~L~~N~l~~ 217 (229)
.++. .+. ...++++|.+.++.++.
T Consensus 190 ~~l~~-~l~~~~~~~~~le~L~L~~~~~t~ 218 (478)
T KOG4308|consen 190 LVLSQ-ALESAASPLSSLETLKLSRCGVTS 218 (478)
T ss_pred HHHhh-hhhhhhcccccHHHHhhhhcCcCh
Confidence 0111 222 35566667776666553
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.06 E-value=39 Score=17.11 Aligned_cols=10 Identities=40% Similarity=0.312 Sum_probs=4.5
Q ss_pred CccEEeccCC
Q 027045 179 SLTTLILSDN 188 (229)
Q Consensus 179 ~L~~L~Ls~N 188 (229)
+|+.|+|+++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444444443
No 93
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=29.55 E-value=25 Score=31.21 Aligned_cols=89 Identities=22% Similarity=0.151 Sum_probs=55.6
Q ss_pred CCCCCcEEeCCCCc-CCC--ccccccccccCCCCCCcEEEcCCC-CCCCCCc----ccccCCCCccEEeccCCc-CCCCC
Q 027045 124 PFEELQRLDLPGNW-FTG--IYENRAYDSFGSLKQLKMLNLGDN-FFNDSIL----PYLNTLTSLTTLILSDNS-IEGSR 194 (229)
Q Consensus 124 ~l~~L~~L~Ls~N~-l~~--~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p----~~l~~l~~L~~L~Ls~N~-l~~~i 194 (229)
..+.|+.|.+.... ++. ..+ .....+.|+.|+++++ ......+ .....+.+|+.|+++... ++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDA-----LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHH-----HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 36778888777653 332 222 5667899999999873 2111112 234566889999999887 55422
Q ss_pred ChhhcC-CCCCCCEEeccCCc-CCCC
Q 027045 195 TKQGLA-NLRYLQVLDLSGNF-NITS 218 (229)
Q Consensus 195 p~~~~~-~l~~L~~L~L~~N~-l~~~ 218 (229)
-. .+. .+++|++|.+.+.. ++..
T Consensus 261 l~-~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 261 LS-ALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HH-HHHhhCCCcceEccCCCCccchh
Confidence 12 233 48899999977665 4443
Done!