Query 027045
Match_columns 229
No_of_seqs 314 out of 2589
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:18:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4E-29 185.1 10.7 165 35-217 2-188 (313)
2 3rgz_A Protein brassinosteroid 99.9 8E-23 2.7E-27 193.0 11.5 169 32-218 5-193 (768)
3 4eco_A Uncharacterized protein 99.8 5.5E-21 1.9E-25 177.0 11.8 179 35-227 26-332 (636)
4 4ecn_A Leucine-rich repeat pro 99.8 9.2E-21 3.1E-25 180.9 9.4 169 34-220 264-565 (876)
5 4fcg_A Uncharacterized protein 99.8 6.9E-20 2.4E-24 156.7 4.7 170 34-218 22-221 (328)
6 3e6j_A Variable lymphocyte rec 99.8 2.6E-18 9E-23 139.7 13.7 126 75-218 15-150 (229)
7 2o6s_A Variable lymphocyte rec 99.7 1.7E-17 5.9E-22 132.4 13.5 124 78-218 6-139 (208)
8 2v9t_B SLIT homolog 2 protein 99.7 2.2E-17 7.7E-22 133.4 13.3 131 81-227 12-154 (220)
9 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4.1E-22 132.2 9.7 125 81-221 9-144 (192)
10 3m19_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 134.3 12.4 95 120-219 77-171 (251)
11 2o6r_A Variable lymphocyte rec 99.7 4.9E-17 1.7E-21 126.6 12.2 123 79-218 7-139 (177)
12 2v70_A SLIT-2, SLIT homolog 2 99.7 5.4E-17 1.9E-21 131.1 12.4 123 81-218 12-144 (220)
13 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.6E-21 132.3 13.3 91 123-218 82-172 (270)
14 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4.1E-21 126.7 10.0 113 93-222 32-145 (193)
15 4g8a_A TOLL-like receptor 4; l 99.7 5E-16 1.7E-20 141.8 12.6 111 92-218 52-163 (635)
16 2v70_A SLIT-2, SLIT homolog 2 99.7 5.1E-16 1.8E-20 125.4 10.7 115 92-222 57-172 (220)
17 3m19_A Variable lymphocyte rec 99.6 2E-15 6.8E-20 123.9 13.8 94 120-218 101-194 (251)
18 2v9t_B SLIT homolog 2 protein 99.6 9.5E-16 3.2E-20 123.8 10.7 116 92-223 56-172 (220)
19 3rfs_A Internalin B, repeat mo 99.6 1E-14 3.5E-19 121.1 15.0 95 119-218 102-196 (272)
20 3g39_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 113.3 12.6 89 126-219 30-118 (170)
21 3rgz_A Protein brassinosteroid 99.6 1E-15 3.4E-20 144.5 8.1 93 121-218 627-719 (768)
22 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 113.8 8.4 118 92-227 17-142 (149)
23 3o6n_A APL1; leucine-rich repe 99.6 2.2E-15 7.4E-20 131.1 9.2 94 120-218 87-180 (390)
24 2xot_A Amphoterin-induced prot 99.6 4.6E-15 1.6E-19 128.2 11.2 94 120-218 82-178 (361)
25 2o6q_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 119.3 13.8 104 119-227 102-207 (270)
26 3e6j_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 118.2 12.1 111 92-219 64-175 (229)
27 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5E-19 115.2 12.2 111 92-218 52-163 (208)
28 2z80_A TOLL-like receptor 2, v 99.6 4.6E-15 1.6E-19 127.4 9.9 120 76-213 27-159 (353)
29 3rfs_A Internalin B, repeat mo 99.6 2.1E-14 7.3E-19 119.2 13.6 119 92-228 63-184 (272)
30 2ell_A Acidic leucine-rich nuc 99.6 5.5E-15 1.9E-19 113.9 9.3 110 92-219 24-136 (168)
31 2r9u_A Variable lymphocyte rec 99.6 2.2E-14 7.5E-19 111.8 12.8 106 95-219 15-121 (174)
32 2z81_A CD282 antigen, TOLL-lik 99.6 6.8E-15 2.3E-19 132.9 11.2 119 78-214 3-134 (549)
33 2z62_A TOLL-like receptor 4, v 99.6 1.8E-14 6.1E-19 119.5 12.9 94 120-218 70-164 (276)
34 1ozn_A Reticulon 4 receptor; N 99.6 3.4E-14 1.2E-18 118.4 14.2 104 119-227 73-179 (285)
35 3oja_B Anopheles plasmodium-re 99.6 7.8E-15 2.7E-19 134.6 10.8 95 119-218 92-186 (597)
36 3zyi_A Leucine-rich repeat-con 99.6 2.2E-14 7.5E-19 127.2 12.6 132 92-227 75-220 (452)
37 3v47_A TOLL-like receptor 5B a 99.6 1.3E-14 4.4E-19 128.2 11.0 123 92-218 30-169 (455)
38 3vq2_A TLR4, TOLL-like recepto 99.6 3.4E-14 1.2E-18 129.9 13.8 109 92-216 32-141 (606)
39 1w8a_A SLIT protein; signaling 99.6 3E-14 1E-18 112.5 11.6 115 95-227 11-128 (192)
40 1ozn_A Reticulon 4 receptor; N 99.6 3.8E-14 1.3E-18 118.1 12.7 106 117-227 96-203 (285)
41 2id5_A Lingo-1, leucine rich r 99.6 2.1E-14 7.2E-19 127.9 11.7 122 81-218 12-143 (477)
42 3zyj_A Leucine-rich repeat-con 99.6 2.2E-14 7.5E-19 126.8 11.7 104 120-227 106-209 (440)
43 4ezg_A Putative uncharacterize 99.5 1.6E-14 5.5E-19 114.3 9.4 102 120-228 82-184 (197)
44 2xot_A Amphoterin-induced prot 99.5 2.8E-14 9.6E-19 123.2 11.5 123 81-219 19-152 (361)
45 2ifg_A High affinity nerve gro 99.5 2.9E-14 1E-18 122.0 11.1 95 122-222 27-122 (347)
46 3v47_A TOLL-like receptor 5B a 99.5 3.6E-14 1.2E-18 125.3 11.7 95 119-218 316-410 (455)
47 2wfh_A SLIT homolog 2 protein 99.5 1.1E-13 3.6E-18 109.6 13.0 97 126-228 31-129 (193)
48 2o6r_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 106.1 13.9 114 95-227 10-126 (177)
49 1p9a_G Platelet glycoprotein I 99.5 1.5E-13 5E-18 115.5 13.8 93 121-218 95-187 (290)
50 3t6q_A CD180 antigen; protein- 99.5 6.4E-14 2.2E-18 128.1 12.5 111 92-218 33-144 (606)
51 1ziw_A TOLL-like receptor 3; i 99.5 5.9E-14 2E-18 130.1 11.4 122 92-218 25-160 (680)
52 2z62_A TOLL-like receptor 4, v 99.5 7.1E-14 2.4E-18 115.9 10.1 110 93-218 29-139 (276)
53 4g8a_A TOLL-like receptor 4; l 99.5 6.1E-14 2.1E-18 127.9 10.4 101 118-223 486-587 (635)
54 2z63_A TOLL-like receptor 4, v 99.5 1.3E-13 4.3E-18 124.9 12.3 94 120-218 70-164 (570)
55 4fcg_A Uncharacterized protein 99.5 9E-14 3.1E-18 118.7 10.4 130 92-227 150-303 (328)
56 3j0a_A TOLL-like receptor 5; m 99.5 9.9E-14 3.4E-18 132.1 11.7 132 81-218 15-163 (844)
57 3zyj_A Leucine-rich repeat-con 99.5 1.6E-13 5.4E-18 121.3 11.7 90 118-212 80-169 (440)
58 1ogq_A PGIP-2, polygalacturona 99.5 1.6E-14 5.4E-19 122.5 5.0 120 92-217 76-211 (313)
59 2z66_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 114.9 11.5 94 120-218 144-238 (306)
60 2xwt_C Thyrotropin receptor; s 99.5 5.3E-14 1.8E-18 114.4 7.9 109 92-218 31-146 (239)
61 3zyi_A Leucine-rich repeat-con 99.5 2E-13 6.9E-18 121.0 12.2 93 119-218 140-233 (452)
62 2ft3_A Biglycan; proteoglycan, 99.5 3.3E-13 1.1E-17 114.8 13.0 119 79-217 33-161 (332)
63 3vq2_A TLR4, TOLL-like recepto 99.5 1.1E-13 3.7E-18 126.6 10.6 111 92-218 56-168 (606)
64 1xku_A Decorin; proteoglycan, 99.5 2.9E-13 1E-17 115.0 12.5 120 78-217 30-159 (330)
65 1a9n_A U2A', U2A'; complex (nu 99.5 9.9E-14 3.4E-18 107.8 8.7 107 93-219 20-129 (176)
66 1p9a_G Platelet glycoprotein I 99.5 2.4E-13 8.3E-18 114.1 11.7 98 117-220 115-212 (290)
67 4ezg_A Putative uncharacterize 99.5 9.9E-14 3.4E-18 109.7 8.6 116 93-228 45-162 (197)
68 3o6n_A APL1; leucine-rich repe 99.5 3.3E-13 1.1E-17 117.2 12.6 119 93-227 46-167 (390)
69 4b8c_D Glucose-repressible alc 99.5 7.3E-14 2.5E-18 131.2 7.8 170 37-227 130-318 (727)
70 3oja_B Anopheles plasmodium-re 99.5 4.3E-13 1.5E-17 123.1 12.6 106 117-227 66-173 (597)
71 2z66_A Variable lymphocyte rec 99.5 2.1E-13 7E-18 114.6 9.6 97 119-220 168-265 (306)
72 2ell_A Acidic leucine-rich nuc 99.5 1E-13 3.5E-18 106.6 7.1 110 92-219 49-163 (168)
73 2z7x_B TOLL-like receptor 1, v 99.5 1.2E-13 4.3E-18 124.0 8.5 116 92-227 21-138 (520)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.5E-13 1.2E-17 122.5 11.2 116 92-227 52-169 (562)
75 2id5_A Lingo-1, leucine rich r 99.4 3.5E-13 1.2E-17 119.9 10.5 122 92-218 56-191 (477)
76 3oja_A Leucine-rich immune mol 99.4 5.6E-13 1.9E-17 119.7 10.6 118 81-218 110-229 (487)
77 2z63_A TOLL-like receptor 4, v 99.4 4.8E-13 1.6E-17 121.1 10.2 122 91-228 27-152 (570)
78 1dce_A Protein (RAB geranylger 99.4 5E-13 1.7E-17 122.3 10.0 106 93-219 442-549 (567)
79 2je0_A Acidic leucine-rich nuc 99.4 6E-13 2.1E-17 100.3 8.8 97 124-227 15-115 (149)
80 3g39_A Variable lymphocyte rec 99.4 8.8E-13 3E-17 102.1 9.3 98 81-193 10-117 (170)
81 4b8c_D Glucose-repressible alc 99.4 4.5E-13 1.5E-17 125.8 8.7 107 92-218 224-331 (727)
82 3t6q_A CD180 antigen; protein- 99.4 7.7E-13 2.6E-17 120.9 9.8 111 92-218 57-168 (606)
83 1h6t_A Internalin B; cell adhe 99.4 2.5E-12 8.6E-17 107.9 11.8 96 121-227 107-202 (291)
84 2r9u_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 99.6 11.3 93 128-228 14-108 (174)
85 2z80_A TOLL-like receptor 2, v 99.4 4.8E-12 1.6E-16 108.5 13.6 123 83-228 26-152 (353)
86 1xeu_A Internalin C; cellular 99.4 3E-12 1E-16 105.9 11.9 111 92-227 63-174 (263)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 6.7E-12 2.3E-16 114.1 14.4 130 91-227 352-499 (562)
88 1h6t_A Internalin B; cell adhe 99.4 4E-12 1.4E-16 106.6 12.0 113 92-228 68-181 (291)
89 1h6u_A Internalin H; cell adhe 99.4 4E-12 1.4E-16 107.4 12.1 96 121-227 102-197 (308)
90 1h6u_A Internalin H; cell adhe 99.4 7E-12 2.4E-16 105.9 13.5 95 122-227 125-219 (308)
91 3j0a_A TOLL-like receptor 5; m 99.4 1.7E-12 5.7E-17 123.7 10.6 116 93-224 267-383 (844)
92 1ziw_A TOLL-like receptor 3; i 99.4 1.8E-12 6.2E-17 120.0 10.4 98 117-219 88-187 (680)
93 1xku_A Decorin; proteoglycan, 99.4 3.4E-12 1.2E-16 108.4 11.1 87 126-218 192-278 (330)
94 2z81_A CD282 antigen, TOLL-lik 99.4 7.4E-12 2.5E-16 113.0 13.8 97 126-227 26-125 (549)
95 1xeu_A Internalin C; cellular 99.4 5.2E-12 1.8E-16 104.5 11.7 112 92-228 41-153 (263)
96 2z7x_B TOLL-like receptor 1, v 99.4 1.7E-12 5.7E-17 116.7 9.2 112 95-228 3-118 (520)
97 3o53_A Protein LRIM1, AGAP0063 99.3 2E-12 6.9E-17 109.5 8.9 91 120-218 138-229 (317)
98 1a9n_A U2A', U2A'; complex (nu 99.3 7E-13 2.4E-17 103.0 5.5 106 93-217 43-154 (176)
99 1wwl_A Monocyte differentiatio 99.3 6.9E-13 2.4E-17 112.1 5.8 89 126-218 149-243 (312)
100 1wwl_A Monocyte differentiatio 99.3 5.6E-13 1.9E-17 112.7 5.0 99 117-219 164-269 (312)
101 2xwt_C Thyrotropin receptor; s 99.3 6.7E-13 2.3E-17 107.8 5.2 107 92-216 55-169 (239)
102 4glp_A Monocyte differentiatio 99.3 1.8E-12 6.2E-17 109.4 7.6 101 123-228 194-297 (310)
103 1m9s_A Internalin B; cell inva 99.3 9.7E-12 3.3E-16 114.5 12.3 96 121-227 104-199 (605)
104 4eco_A Uncharacterized protein 99.3 1.1E-12 3.6E-17 121.5 5.9 101 119-224 240-352 (636)
105 2ft3_A Biglycan; proteoglycan, 99.3 4.4E-12 1.5E-16 107.8 9.3 92 119-216 210-307 (332)
106 4fmz_A Internalin; leucine ric 99.3 8.2E-12 2.8E-16 106.4 10.3 98 122-228 239-336 (347)
107 3oja_A Leucine-rich immune mol 99.3 3.8E-12 1.3E-16 114.3 7.4 98 123-227 117-216 (487)
108 4ecn_A Leucine-rich repeat pro 99.3 1.4E-12 4.9E-17 124.5 4.6 90 121-218 510-610 (876)
109 4glp_A Monocyte differentiatio 99.3 1.7E-12 5.9E-17 109.5 4.5 121 93-218 92-239 (310)
110 3o53_A Protein LRIM1, AGAP0063 99.3 1.4E-11 4.8E-16 104.2 9.1 85 123-216 166-250 (317)
111 1m9s_A Internalin B; cell inva 99.3 2.8E-11 9.7E-16 111.4 11.8 113 92-228 65-178 (605)
112 4fmz_A Internalin; leucine ric 99.2 2.5E-11 8.6E-16 103.4 9.6 88 120-216 259-346 (347)
113 3bz5_A Internalin-J, INLJ; leu 99.2 8.5E-11 2.9E-15 104.7 12.6 79 122-214 81-159 (457)
114 1o6v_A Internalin A; bacterial 99.2 8.7E-11 3E-15 104.4 12.1 95 122-227 283-377 (466)
115 1o6v_A Internalin A; bacterial 99.2 5.4E-11 1.9E-15 105.7 10.4 79 122-211 86-164 (466)
116 1dce_A Protein (RAB geranylger 99.2 5.2E-11 1.8E-15 108.9 10.3 92 127-228 442-536 (567)
117 4ay9_X Follicle-stimulating ho 99.2 2.7E-11 9.4E-16 103.9 6.6 99 79-192 9-118 (350)
118 3cvr_A Invasion plasmid antige 99.2 4.8E-11 1.6E-15 109.2 8.5 125 76-220 40-177 (571)
119 3bz5_A Internalin-J, INLJ; leu 99.1 5.6E-10 1.9E-14 99.3 12.7 92 122-227 102-193 (457)
120 1ds9_A Outer arm dynein; leuci 99.1 1.9E-13 6.5E-18 108.2 -8.9 106 92-218 48-155 (198)
121 2ifg_A High affinity nerve gro 99.1 1.7E-10 6E-15 98.4 8.7 84 129-219 11-96 (347)
122 1jl5_A Outer protein YOPM; leu 99.1 9.1E-10 3.1E-14 97.9 12.6 85 122-218 149-252 (454)
123 1jl5_A Outer protein YOPM; leu 99.0 1.8E-09 6.2E-14 96.0 12.4 114 92-219 91-211 (454)
124 4ay9_X Follicle-stimulating ho 99.0 4.4E-10 1.5E-14 96.4 8.1 91 126-221 30-122 (350)
125 2ast_B S-phase kinase-associat 99.0 1.7E-11 5.8E-16 103.9 -1.3 91 122-217 89-183 (336)
126 2ast_B S-phase kinase-associat 99.0 9.5E-11 3.2E-15 99.2 2.7 89 121-214 113-206 (336)
127 1ds9_A Outer arm dynein; leuci 99.0 2.6E-12 8.8E-17 101.6 -6.7 89 121-219 43-131 (198)
128 3cvr_A Invasion plasmid antige 99.0 1.6E-09 5.5E-14 99.0 9.5 58 154-217 180-244 (571)
129 2ca6_A RAN GTPase-activating p 99.0 7.4E-11 2.5E-15 102.2 0.6 94 121-219 211-319 (386)
130 3g06_A SSPH2 (leucine-rich rep 99.0 2.9E-10 1E-14 105.0 4.0 132 64-219 12-157 (622)
131 3goz_A Leucine-rich repeat-con 98.9 1.1E-10 3.8E-15 100.4 0.7 92 126-218 80-182 (362)
132 3g06_A SSPH2 (leucine-rich rep 98.9 1.1E-08 3.6E-13 94.6 11.5 79 126-218 221-299 (622)
133 3rw6_A Nuclear RNA export fact 98.9 5.3E-11 1.8E-15 98.8 -4.3 64 151-217 167-234 (267)
134 3goz_A Leucine-rich repeat-con 98.9 4.6E-10 1.6E-14 96.6 1.3 112 91-218 21-153 (362)
135 2ca6_A RAN GTPase-activating p 98.8 4.7E-10 1.6E-14 97.2 1.1 92 121-217 182-288 (386)
136 3sb4_A Hypothetical leucine ri 98.7 4E-08 1.4E-12 83.3 8.7 96 125-227 225-323 (329)
137 3sb4_A Hypothetical leucine ri 98.7 3.8E-08 1.3E-12 83.4 7.4 88 116-210 240-328 (329)
138 3rw6_A Nuclear RNA export fact 98.7 1.7E-08 5.8E-13 83.7 4.9 81 123-209 167-257 (267)
139 1z7x_W Ribonuclease inhibitor; 98.6 1E-09 3.5E-14 96.7 -3.0 88 126-218 313-413 (461)
140 1z7x_W Ribonuclease inhibitor; 98.6 2.4E-09 8.2E-14 94.3 -2.3 94 121-218 51-157 (461)
141 3un9_A NLR family member X1; l 98.6 1E-08 3.5E-13 89.0 0.7 94 124-218 153-254 (372)
142 3un9_A NLR family member X1; l 98.5 1E-08 3.5E-13 88.9 -1.1 116 92-218 101-226 (372)
143 3ogk_B Coronatine-insensitive 98.2 1.2E-07 4E-12 86.0 -1.4 91 124-218 434-528 (592)
144 1io0_A Tropomodulin; LRR prote 98.2 4.8E-07 1.7E-11 70.6 1.9 120 91-217 35-165 (185)
145 1io0_A Tropomodulin; LRR prote 98.1 4E-07 1.4E-11 71.1 0.1 97 121-218 31-138 (185)
146 4fdw_A Leucine rich hypothetic 98.1 1.1E-05 3.7E-10 70.5 8.8 95 116-218 261-360 (401)
147 3ogk_B Coronatine-insensitive 97.9 1.5E-06 5.1E-11 78.8 0.7 83 124-212 162-252 (592)
148 2p1m_B Transport inhibitor res 97.9 4.8E-07 1.6E-11 82.0 -2.6 63 153-215 455-518 (594)
149 4fdw_A Leucine rich hypothetic 97.9 7.9E-05 2.7E-09 65.0 10.9 26 116-141 170-195 (401)
150 3e4g_A ATP synthase subunit S, 97.7 8.1E-06 2.8E-10 63.3 1.7 83 127-214 62-150 (176)
151 2p1m_B Transport inhibitor res 97.7 3.9E-06 1.3E-10 76.0 -0.4 104 93-213 106-221 (594)
152 3rfe_A Platelet glycoprotein I 97.6 9.4E-05 3.2E-09 54.3 5.9 56 129-191 11-68 (130)
153 4gt6_A Cell surface protein; l 97.5 0.00073 2.5E-08 58.3 10.2 90 117-214 279-368 (394)
154 3e4g_A ATP synthase subunit S, 97.4 3.7E-05 1.3E-09 59.6 1.1 86 92-192 61-154 (176)
155 4h09_A Hypothetical leucine ri 97.3 0.00059 2E-08 58.3 8.0 90 117-213 254-343 (379)
156 3rfe_A Platelet glycoprotein I 97.3 0.00054 1.8E-08 50.2 6.4 38 126-167 31-68 (130)
157 2ra8_A Uncharacterized protein 97.3 3.2E-05 1.1E-09 66.6 -0.3 65 152-217 250-321 (362)
158 4fs7_A Uncharacterized protein 97.1 0.001 3.4E-08 57.4 7.3 86 120-213 291-376 (394)
159 4h09_A Hypothetical leucine ri 97.1 0.0031 1.1E-07 53.8 9.8 94 117-218 231-324 (379)
160 4gt6_A Cell surface protein; l 97.0 0.0015 5.2E-08 56.2 7.2 90 116-215 301-390 (394)
161 4fs7_A Uncharacterized protein 96.8 0.0022 7.4E-08 55.3 6.3 84 116-208 310-393 (394)
162 2ra8_A Uncharacterized protein 96.6 0.00024 8.2E-09 61.2 -1.0 87 124-214 250-341 (362)
163 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00084 2.9E-08 52.8 2.2 92 122-214 66-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 95.3 0.0035 1.2E-07 49.2 0.6 92 122-214 37-137 (197)
165 2lz0_A Uncharacterized protein 57.9 17 0.00059 24.5 4.7 42 117-163 11-52 (100)
166 2lz0_A Uncharacterized protein 53.7 19 0.00065 24.3 4.4 48 136-188 6-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.2e-24 Score=185.14 Aligned_cols=165 Identities=22% Similarity=0.373 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCceecCCC--CcEEEEecCC-Cccc--cc
Q 027045 35 ACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD--WEGVKCNATT--RRVMQLSLNE-TIKF--NY 107 (229)
Q Consensus 35 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~--w~gv~C~~~~--~~v~~L~L~~-~l~~--~~ 107 (229)
.|.+.|++||++||+++. +|. .+.+|.. +.+|| . |.||+|+... ++|+.|++++ ++.+ .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~----~~~---~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG----NPT---TLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT----CCG---GGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcC----Ccc---cccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence 588999999999999996 443 5789987 67899 7 9999997544 7999999999 8887 55
Q ss_pred cCCCCCcc--------------ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045 108 SSGSGSAL--------------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY 173 (229)
Q Consensus 108 ~~~~~~~~--------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 173 (229)
|....... ...+..|.++++|++|++++|++++.+|. .|..+++|++|++++|.+++.+|..
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCChH
Confidence 54322111 11223455666666666666666666665 6666666666666666666666666
Q ss_pred ccCCCCccEEeccCCcCCCCCChhhcCCCC-CCCEEeccCCcCCC
Q 027045 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLR-YLQVLDLSGNFNIT 217 (229)
Q Consensus 174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~-~L~~L~L~~N~l~~ 217 (229)
+..+++|++|++++|++++.+|. .+..++ +|++|++++|.+++
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEE
T ss_pred HhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeec
Confidence 66666666666666666655665 566665 66666666666653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=8e-23 Score=192.96 Aligned_cols=169 Identities=29% Similarity=0.342 Sum_probs=115.7
Q ss_pred cCCCCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCcEEEEecCC-Ccccc---c
Q 027045 32 GYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFN---Y 107 (229)
Q Consensus 32 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~w~gv~C~~~~~~v~~L~L~~-~l~~~---~ 107 (229)
+++++.+.|++||++||+++. ||. .+.+|.. +.+|| .|.||+|+ .++|+.|+|++ .+.|. +
T Consensus 5 ~~~~~~~~~~~all~~k~~~~----~~~---~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l 69 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP----DKN---LLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSSKPLNVGFSAV 69 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS----CTT---SSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTTSCCCEEHHHH
T ss_pred ccccCCHHHHHHHHHHHhhCC----Ccc---cccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCCCCcCCccCcc
Confidence 344557889999999999996 453 5789987 67999 99999997 68999999999 88886 5
Q ss_pred cCCCCCccccC------------CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccc-
Q 027045 108 SSGSGSALLLN------------MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL- 174 (229)
Q Consensus 108 ~~~~~~~~~l~------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l- 174 (229)
++....+..++ +..|..+++|++|+|++|.++|.+|. ...++.+++|++|++++|.+++.+|..+
T Consensus 70 ~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 70 SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT--LTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp HHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGG--GGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred ChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCC--hHHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence 54333222111 24677888888888888888876653 1146677777777777777776666654
Q ss_pred cCCCCccEEeccCCcCCCCCChhh---cCCCCCCCEEeccCCcCCCC
Q 027045 175 NTLTSLTTLILSDNSIEGSRTKQG---LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 175 ~~l~~L~~L~Ls~N~l~~~ip~~~---~~~l~~L~~L~L~~N~l~~~ 218 (229)
..+++|++|++++|++++..|. . +.++++|++|++++|.+++.
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~ 193 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGD 193 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESC
T ss_pred ccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCccccc
Confidence 5667777777777777663333 3 44455555555555544443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=5.5e-21 Score=177.03 Aligned_cols=179 Identities=19% Similarity=0.186 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHhhccccC----CCCCCCCCCCCCCCCCCCCCCCCCCCC---CCceecCCCCcEEEEecCC-Ccccc
Q 027045 35 ACLETERTALLEIKSFFISVS----DIGYDDKILPSWVGEDDGMSSDCCDDW---EGVKCNATTRRVMQLSLNE-TIKFN 106 (229)
Q Consensus 35 ~~~~~~~~~L~~~~~~~~~~~----~~~~~~~~~~~W~~~~~~~~~~~C~~w---~gv~C~~~~~~v~~L~L~~-~l~~~ 106 (229)
+....|++||.++++++.+.. +++.. ...+|+. ..++| .| .||+|+. .++|++|+|++ ++.|.
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~--~~~~W~~-----~~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQ--PGANWNF-----NKELD-MWGAQPGVSLNS-NGRVTGLSLEGFGASGR 96 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC--------CCCCC-----SSCGG-GTTCCTTEEECT-TCCEEEEECTTSCCEEE
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCc--cCCCCCC-----CCCcc-cccCCCCeEEcC-CCCEEEEEecCcccCCc
Confidence 334579999999999986321 00111 2347988 68999 99 9999985 48999999999 99987
Q ss_pred ccCCCCCcccc---------------------------------------------------------------------
Q 027045 107 YSSGSGSALLL--------------------------------------------------------------------- 117 (229)
Q Consensus 107 ~~~~~~~~~~l--------------------------------------------------------------------- 117 (229)
+|+.+..+..+
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 76433211100
Q ss_pred ---------------------CCcccCCCCCCcEEeCCCCcCCCc-----------------cccccccccC--CCCCCc
Q 027045 118 ---------------------NMSLFHPFEELQRLDLPGNWFTGI-----------------YENRAYDSFG--SLKQLK 157 (229)
Q Consensus 118 ---------------------~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~~~~~--~l~~L~ 157 (229)
-+..++++++|++|++++|++++. +|. .++ .+++|+
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~ 252 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLT 252 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCC
T ss_pred cccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCC
Confidence 112355667777777777777774 565 666 777777
Q ss_pred EEEcCCCCCCCCCcccccCCCCccEEeccCCc-CCC-CCChhhcCCC------CCCCEEeccCCcCCCCCC---cccCCC
Q 027045 158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEG-SRTKQGLANL------RYLQVLDLSGNFNITSGS---LTRLGR 226 (229)
Q Consensus 158 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~ip~~~~~~l------~~L~~L~L~~N~l~~~~~---~~~l~~ 226 (229)
+|++++|.+.+.+|..++++++|++|++++|+ +++ .+|. .++++ ++|++|++++|+++.++. +..+.+
T Consensus 253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~ 331 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331 (636)
T ss_dssp EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTT
T ss_pred EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCC
Confidence 77777777777777777777777777777776 665 5665 55554 677777777777765543 444444
Q ss_pred C
Q 027045 227 L 227 (229)
Q Consensus 227 L 227 (229)
|
T Consensus 332 L 332 (636)
T 4eco_A 332 L 332 (636)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=9.2e-21 Score=180.85 Aligned_cols=169 Identities=20% Similarity=0.171 Sum_probs=116.3
Q ss_pred CCCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCC--CCCC------------CCceecCCCCcEEEEec
Q 027045 34 KACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC--CDDW------------EGVKCNATTRRVMQLSL 99 (229)
Q Consensus 34 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--C~~w------------~gv~C~~~~~~v~~L~L 99 (229)
+++...|++||++||+++. +| +|+........+| | .| .||+|+. .++|+.|+|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~----~~-------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~L 330 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD----GK-------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSL 330 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT----GG-------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEEC
T ss_pred cccchHHHHHHHHHHHHcC----CC-------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEEC
Confidence 3455689999999999996 22 5655000000245 9 99 9999985 689999999
Q ss_pred CC-CccccccCCCCCcc---cc----------------------------------------------------------
Q 027045 100 NE-TIKFNYSSGSGSAL---LL---------------------------------------------------------- 117 (229)
Q Consensus 100 ~~-~l~~~~~~~~~~~~---~l---------------------------------------------------------- 117 (229)
++ ++.|.+|+.+..+. .+
T Consensus 331 s~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp TTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred ccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 99 99998775432211 00
Q ss_pred -----------------------------CCcccCCCCCCcEEeCCCCcCCC-----------------ccccccccccC
Q 027045 118 -----------------------------NMSLFHPFEELQRLDLPGNWFTG-----------------IYENRAYDSFG 151 (229)
Q Consensus 118 -----------------------------~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~~~~~ 151 (229)
-+..|.++++|++|+|++|+|++ .+|. .++
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~ 486 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELS 486 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCC
T ss_pred CccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhh
Confidence 12346677788888888888887 3666 666
Q ss_pred --CCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCc-CCC-CCChhhcCCC-------CCCCEEeccCCcCCCCCC
Q 027045 152 --SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEG-SRTKQGLANL-------RYLQVLDLSGNFNITSGS 220 (229)
Q Consensus 152 --~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~ip~~~~~~l-------~~L~~L~L~~N~l~~~~~ 220 (229)
.+++|++|++++|.+.+.+|..++++++|++|+|++|+ +++ .+|. .++++ ++|++|++++|.++.++.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 78888888888888777778777777888888888777 776 5665 34433 377777777777665443
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=6.9e-20 Score=156.74 Aligned_cols=170 Identities=17% Similarity=0.173 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecC--------CCCcEEEEecCC-Ccc
Q 027045 34 KACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNA--------TTRRVMQLSLNE-TIK 104 (229)
Q Consensus 34 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~w~gv~C~~--------~~~~v~~L~L~~-~l~ 104 (229)
.++..+|+++|++||+.+.. ++.+ ....|...+.. ..++| .|.|+.|.. ...+|+.|++++ ++.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~---~~~~--~~~~w~~~~~~-~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~ 94 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNA---DRNR--WHSAWRQANSN-NPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLP 94 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHH---CCTT--HHHHHHHHTTT-CTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred cccCchHHHHHHHHHHhccC---Cchh--hhhhhcccccc-ccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence 34556789999999998852 4444 66778410001 57899 999999952 346899999999 766
Q ss_pred ccccCCCCCcc---cc---------CCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcc
Q 027045 105 FNYSSGSGSAL---LL---------NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP 172 (229)
Q Consensus 105 ~~~~~~~~~~~---~l---------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 172 (229)
.+|....... .+ -+..+..+++|++|++++|+++. +|. .+..+++|++|++++|.+.+.+|.
T Consensus 95 -~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~-lp~----~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 95 -QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA-LPA----SIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp -SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC-CCG----GGGGCTTCCEEEEEEETTCCCCCS
T ss_pred -hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc-CcH----HHhcCcCCCEEECCCCCCccccCh
Confidence 5665433221 11 12346677778888888887774 565 666666666666666665555655
Q ss_pred cccC---------CCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 173 YLNT---------LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 173 ~l~~---------l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.+.. +++|++|++++|+++. +|. .++++++|++|++++|.+++.
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~-~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRS-LPA-SIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCC-CCG-GGGGCTTCCEEEEESSCCCCC
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCc-chH-hhcCCCCCCEEEccCCCCCcC
Confidence 4433 5556666666666553 554 455566666666666655554
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.6e-18 Score=139.66 Aligned_cols=126 Identities=25% Similarity=0.331 Sum_probs=85.1
Q ss_pred CCCCCCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccc
Q 027045 75 SSDCCDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYEN 144 (229)
Q Consensus 75 ~~~~C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 144 (229)
....| .|.+|.|... ...++.|++++ ++.+ +.+..|..+++|++|+|++|+|+.+.+.
T Consensus 15 ~~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 15 SQCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK-----------LEPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp TTCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc-----------cCHHHhhCccCCcEEECCCCCCCCcChh
Confidence 46889 9999999751 24678899998 7776 3344566666777777777777664444
Q ss_pred ccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 145 RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 145 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.|..+++|++|++++|.+++..+..|..+++|++|+|++|+++. +|. .+.++++|++|++++|++++.
T Consensus 83 ----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 83 ----VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSCCCCC
T ss_pred ----hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCcCCcc
Confidence 56666677777777777665555556666667777777776664 665 566666667777766666665
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.7e-17 Score=132.37 Aligned_cols=124 Identities=25% Similarity=0.331 Sum_probs=78.8
Q ss_pred CCCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccc
Q 027045 78 CCDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAY 147 (229)
Q Consensus 78 ~C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 147 (229)
.| .|.+|.|... ..+++.|++++ ++.+ +....|..+++|++|++++|++++..+.
T Consensus 6 ~C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~--- 70 (208)
T 2o6s_A 6 SC-SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-----------LPNGVFDELTSLTQLYLGGNKLQSLPNG--- 70 (208)
T ss_dssp EE-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCCCTT---
T ss_pred EE-CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-----------CChhhhcccccCcEEECCCCccCccChh---
Confidence 36 8999999652 23588899998 7765 3334455666666666666666664444
Q ss_pred cccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 148 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+.++++|++|++++|++++.
T Consensus 71 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 71 -VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp -TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCcccee
Confidence 45666666666666666665444455666666666666666665 4443456666666666666666655
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.2e-17 Score=133.40 Aligned_cols=131 Identities=25% Similarity=0.382 Sum_probs=95.3
Q ss_pred CCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045 81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF 150 (229)
Q Consensus 81 ~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 150 (229)
.|..+.|... ...++.|++++ ++.+ +....|..+++|++|+|++|+++++.|. .|
T Consensus 12 ~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~-----------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~----~~ 76 (220)
T 2v9t_B 12 SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV-----------IPPGAFSPYKKLRRIDLSNNQISELAPD----AF 76 (220)
T ss_dssp ETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE-----------ECTTSSTTCTTCCEEECCSSCCCEECTT----TT
T ss_pred CCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC-----------cCHhHhhCCCCCCEEECCCCcCCCcCHH----Hh
Confidence 6777888541 23678888888 6665 4455677788888888888888887777 78
Q ss_pred CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG--SLTRLGRL 227 (229)
Q Consensus 151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L 227 (229)
.++++|++|++++|.++...+..|..+++|++|+|++|++++ ++...|..+++|++|++++|++++.. .+..+.+|
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 888888888888888885555556778888888888888887 43336778888888888888887763 24444444
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.2e-17 Score=132.17 Aligned_cols=125 Identities=27% Similarity=0.348 Sum_probs=105.8
Q ss_pred CCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCC-cccCCCCCCcEEeCCCCcCCCccccccccc
Q 027045 81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNM-SLFHPFEELQRLDLPGNWFTGIYENRAYDS 149 (229)
Q Consensus 81 ~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 149 (229)
.|..+.|... ...++.|++++ ++.+ +.. ..|..+++|++|++++|+|++..|. .
T Consensus 9 ~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~ 73 (192)
T 1w8a_A 9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR-----------ISSDGLFGRLPHLVKLELKRNQLTGIEPN----A 73 (192)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS-----------BCCSCSGGGCTTCCEEECCSSCCCCBCTT----T
T ss_pred CCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc-----------cCCccccccCCCCCEEECCCCCCCCcCHh----H
Confidence 6777777541 22677888888 6655 333 3588999999999999999998888 9
Q ss_pred cCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCc
Q 027045 150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221 (229)
Q Consensus 150 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~ 221 (229)
|..+++|++|++++|++++..|..|..+++|++|+|++|++++..|. .+..+++|++|++++|++++...+
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999999999988888899999999999999999995565 899999999999999999987544
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=3.7e-17 Score=134.29 Aligned_cols=95 Identities=28% Similarity=0.334 Sum_probs=61.2
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..|..+++|++|++++|++++..+. .|..+++|++|++++|.+++..+..+..+++|++|+|++|++++ +|...|
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~ 151 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAF 151 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred hHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHc
Confidence 3455666666666666666665554 56666667777777776665555556666777777777777766 444356
Q ss_pred CCCCCCCEEeccCCcCCCCC
Q 027045 200 ANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~~ 219 (229)
..+++|++|++++|++++..
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCC
T ss_pred CcCcCCCEEECCCCcCCccC
Confidence 66777777777777776653
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=4.9e-17 Score=126.64 Aligned_cols=123 Identities=24% Similarity=0.334 Sum_probs=105.0
Q ss_pred CCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccc
Q 027045 79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD 148 (229)
Q Consensus 79 C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 148 (229)
| .|.++.|... ...++.|++++ ++.+ +....|..+++|++|++++|++++..+.
T Consensus 7 C-~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~---- 70 (177)
T 2o6r_A 7 C-SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----------LPHGVFDKLTQLTKLSLSQNQIQSLPDG---- 70 (177)
T ss_dssp E-ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCCCTT----
T ss_pred e-CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE-----------eCHHHhcCcccccEEECCCCcceEeChh----
Confidence 6 7899988641 23678888888 6665 4556688899999999999999997666
Q ss_pred ccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 149 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.|..+++|++|++++|.+++..+..+..+++|++|++++|++++ +|...+..+++|++|++++|++.+.
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeecc
Confidence 78999999999999999997777778999999999999999997 7765678899999999999999875
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=131.14 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=66.4
Q ss_pred CCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045 81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF 150 (229)
Q Consensus 81 ~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 150 (229)
.|..+.|.+. ...++.|++++ ++.+..+ ...|..+++|++|++++|+|+++.+. .|
T Consensus 12 ~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~----------~~~~~~l~~L~~L~L~~N~i~~i~~~----~~ 77 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEA----------TGIFKKLPQLRKINFSNNKITDIEEG----AF 77 (220)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECC----------CCCGGGCTTCCEEECCSSCCCEECTT----TT
T ss_pred CCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCc----------hhhhccCCCCCEEECCCCcCCEECHH----Hh
Confidence 5666666431 12456777777 6655211 23345555555555555555554444 45
Q ss_pred CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|. .|.++++|++|++++|++++.
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCB
T ss_pred CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEE
Confidence 5555555555555555544444455555555555555555552232 455555555555555555554
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.3e-16 Score=132.31 Aligned_cols=91 Identities=24% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 202 (229)
..+++|++|++++|++++..+. .|..+++|++|++++|.+++..+..|..+++|++|++++|++++ +|...|..+
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l 156 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKL 156 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTC
T ss_pred cCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCC
Confidence 3344444444444444443333 34445555555555555554444445555555555555555554 443245555
Q ss_pred CCCCEEeccCCcCCCC
Q 027045 203 RYLQVLDLSGNFNITS 218 (229)
Q Consensus 203 ~~L~~L~L~~N~l~~~ 218 (229)
++|++|++++|.+++.
T Consensus 157 ~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRV 172 (270)
T ss_dssp TTCCEEECCSSCCSCC
T ss_pred cccceeEecCCcCcEe
Confidence 5566666655555554
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=126.69 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=96.6
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
.++.|++++ ++.. +. ..|.++++|++|++++|+|+++.+. .|..+++|++|++++|.+++..|
T Consensus 32 ~l~~L~L~~n~i~~-----------ip-~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~ 95 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-----------VP-KELSNYKHLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYNRLRCIPP 95 (193)
T ss_dssp TCCEEECCSSCCCS-----------CC-GGGGGCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCEEECCCCcCch-----------hH-HHhhcccCCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCCccCEeCH
Confidence 567777777 5543 22 5688899999999999999998777 89999999999999999998888
Q ss_pred ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcc
Q 027045 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT 222 (229)
Q Consensus 172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~ 222 (229)
..|..+++|++|+|++|++++ +|...|..+++|++|++++|++...+.+.
T Consensus 96 ~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred HHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 889999999999999999997 77657889999999999999987765443
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=5e-16 Score=141.78 Aligned_cols=111 Identities=24% Similarity=0.298 Sum_probs=90.5
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
..++.|||++ ++.+ +.+..|.++++|++|+|++|+|+++.|. .|.++++|++|+|++|++++..
T Consensus 52 ~~~~~LdLs~N~i~~-----------l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEEC
T ss_pred cCCCEEEeeCCCCCC-----------CCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCC
Confidence 4688999998 7775 5667788888888888888888887776 7888888888888888888666
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..|.++++|++|++++|++++ +|...|+++++|++|++++|.+++.
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCC
T ss_pred HHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccC
Confidence 6778888888888888888887 6654688888888888888888765
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=125.38 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=102.2
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ .+.+ +....|.++++|++|++++|++++..+. .|..+++|++|++++|.+++..
T Consensus 57 ~~L~~L~L~~N~i~~-----------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 57 PQLRKINFSNNKITD-----------IEEGAFEGASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp TTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBC
T ss_pred CCCCEEECCCCcCCE-----------ECHHHhCCCCCCCEEECCCCccCccCHh----HhcCCcCCCEEECCCCcCCeEC
Confidence 4688899998 7765 5566789999999999999999998777 8999999999999999999888
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcc
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT 222 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~ 222 (229)
|..|..+++|++|+|++|++++..|. .|..+++|++|++++|++++...+.
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCSCCEECSGGGH
T ss_pred HhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecCcCCcCCCchH
Confidence 99999999999999999999994455 8999999999999999998765443
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2e-15 Score=123.90 Aligned_cols=94 Identities=30% Similarity=0.370 Sum_probs=60.4
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..|..+++|++|++++|+|++..+. .|..+++|++|++++|.+++..+..++.+++|++|+|++|++++ ++...+
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~ 175 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAF 175 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-cCHHHH
Confidence 4456666677777777766665544 55666667777777776665555556666667777777776666 443356
Q ss_pred CCCCCCCEEeccCCcCCCC
Q 027045 200 ANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~ 218 (229)
..+++|++|++++|++++.
T Consensus 176 ~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSCCBCTT
T ss_pred hCCCCCCEEEeeCCceeCC
Confidence 6666677777777766654
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=9.5e-16 Score=123.80 Aligned_cols=116 Identities=27% Similarity=0.312 Sum_probs=102.0
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|+|++ .+.+ +.+..|.++++|++|+|++|+|+.+.+. .|..+++|++|++++|.+++..
T Consensus 56 ~~L~~L~Ls~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 56 KKLRRIDLSNNQISE-----------LAPDAFQGLRSLNSLVLYGNKITELPKS----LFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp TTCCEEECCSSCCCE-----------ECTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCEEECCCCcCCC-----------cCHHHhhCCcCCCEEECCCCcCCccCHh----HccCCCCCCEEECCCCCCCEeC
Confidence 4688999999 7765 5567899999999999999999996666 6899999999999999999888
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCccc
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTR 223 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 223 (229)
|..|..+++|++|+|++|++++ ++...|..+++|++|++++|++...+.+.+
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred HHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 9999999999999999999998 665479999999999999999987655443
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=1e-14 Score=121.10 Aligned_cols=95 Identities=26% Similarity=0.285 Sum_probs=58.0
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
...|..+++|++|++++|++++..+. .|..+++|++|++++|.+++..+..++.+++|++|++++|++++ ++...
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 176 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGV 176 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHH
Confidence 33455666666666666666665544 45666666666666666665555555666666666666666665 44334
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
+.++++|++|++++|++++.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCC
T ss_pred hcCCccCCEEECCCCcCCcc
Confidence 56666666666666666655
No 20
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=9.6e-15 Score=113.32 Aligned_cols=89 Identities=28% Similarity=0.248 Sum_probs=81.8
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 205 (229)
++|++|+|++|+|+++.|. .|..+++|++|++++|++++..+..|..+++|++|+|++|+|++ +|...|.++++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence 7899999999999998888 89999999999999999997777778999999999999999998 666579999999
Q ss_pred CEEeccCCcCCCCC
Q 027045 206 QVLDLSGNFNITSG 219 (229)
Q Consensus 206 ~~L~L~~N~l~~~~ 219 (229)
++|++++|+++..+
T Consensus 105 ~~L~L~~N~~~c~c 118 (170)
T 3g39_A 105 THIWLLNNPWDCAC 118 (170)
T ss_dssp CEEECCSSCBCTTB
T ss_pred CEEEeCCCCCCCCc
Confidence 99999999998764
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=1e-15 Score=144.47 Aligned_cols=93 Identities=30% Similarity=0.379 Sum_probs=88.8
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+..+++|++||+++|+++|.+|. .++.++.|+.|++++|.++|.+|..++.+++|++|||++|+++|.+|. .+.
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~ 701 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMS 701 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGG
T ss_pred hhhccccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHh
Confidence 467789999999999999999999 999999999999999999999999999999999999999999998998 899
Q ss_pred CCCCCCEEeccCCcCCCC
Q 027045 201 NLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~ 218 (229)
++++|++|++++|+++|.
T Consensus 702 ~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp GCCCCSEEECCSSEEEEE
T ss_pred CCCCCCEEECcCCccccc
Confidence 999999999999999875
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.2e-15 Score=113.82 Aligned_cols=118 Identities=28% Similarity=0.285 Sum_probs=98.8
Q ss_pred CcEEEEecCC-Ccc-ccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIK-FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169 (229)
Q Consensus 92 ~~v~~L~L~~-~l~-~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~ 169 (229)
.+++.|++++ .+. +.+| ..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-----------GLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-----------SCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSC
T ss_pred ccCeEEEccCCcCChhHHH-----------HHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccch
Confidence 4688899999 776 4222 4567889999999999999996 4 899999999999999999987
Q ss_pred CcccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCCCC-----cccCCCC
Q 027045 170 ILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSGS-----LTRLGRL 227 (229)
Q Consensus 170 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~~-----~~~l~~L 227 (229)
+|..+..+++|++|++++|++++ +|. ..+..+++|++|++++|.+++.+. +..+++|
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred HHHHhhhCCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 88888889999999999999998 541 278999999999999999998754 4445554
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=2.2e-15 Score=131.05 Aligned_cols=94 Identities=23% Similarity=0.175 Sum_probs=57.4
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..|..+++|++|++++|.+++..|. .|..+++|++|++++|.++...+..+..+++|++|++++|++++ ++...+
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 161 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 161 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTT
T ss_pred hhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhc
Confidence 4556666666666666666665555 56666666666666666663333334666666666666666665 333256
Q ss_pred CCCCCCCEEeccCCcCCCC
Q 027045 200 ANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~ 218 (229)
.++++|++|++++|.+++.
T Consensus 162 ~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 162 QATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp SSCTTCCEEECCSSCCSBC
T ss_pred cCCCCCCEEECCCCcCCcc
Confidence 6666666666666666654
No 24
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=4.6e-15 Score=128.16 Aligned_cols=94 Identities=29% Similarity=0.294 Sum_probs=55.2
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..|.++++|++|+|++|+|+++.+. .|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++ +|...|
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 156 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEF----LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGT
T ss_pred hhccCCCCCCEEECCCCcCCcCCHH----HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHh
Confidence 3455566666666666666655444 55666666666666666665555566666666666666666665 554333
Q ss_pred ---CCCCCCCEEeccCCcCCCC
Q 027045 200 ---ANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 200 ---~~l~~L~~L~L~~N~l~~~ 218 (229)
..+++|++|+|++|+|+.+
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp C----CTTCCEEECCSSCCCCC
T ss_pred cCcccCCcCCEEECCCCCCCcc
Confidence 3466666666666666654
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.9e-14 Score=119.31 Aligned_cols=104 Identities=26% Similarity=0.333 Sum_probs=75.9
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
...|..+++|++|++++|++++..+. .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 176 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGA 176 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT
T ss_pred HhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhH
Confidence 34567778888888888888876666 67788888888888888876555567778888888888888877 55446
Q ss_pred cCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITSG--SLTRLGRL 227 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L 227 (229)
|.++++|++|++++|++++.+ .+..+.+|
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 777888888888888877763 24444444
No 26
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.1e-14 Score=118.22 Aligned_cols=111 Identities=25% Similarity=0.245 Sum_probs=99.0
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|+|++ ++.. +....|..+++|++|+|++|+|++..+. .|..+++|++|++++|.++ .+
T Consensus 64 ~~L~~L~L~~N~l~~-----------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~-~l 127 (229)
T 3e6j_A 64 INLKELYLGSNQLGA-----------LPVGVFDSLTQLTVLDLGTNQLTVLPSA----VFDRLVHLKELFMCCNKLT-EL 127 (229)
T ss_dssp TTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-SC
T ss_pred cCCcEEECCCCCCCC-----------cChhhcccCCCcCEEECCCCcCCccChh----HhCcchhhCeEeccCCccc-cc
Confidence 4688999999 7754 5556788999999999999999997776 7899999999999999999 78
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
|..+..+++|++|+|++|++++ +|...+..+++|++|++++|++.+.+
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999999999999999999998 66557999999999999999998764
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.5e-14 Score=115.24 Aligned_cols=111 Identities=25% Similarity=0.260 Sum_probs=97.2
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ ++.+ +....|..+++|++|++++|++++..+. .|..+++|++|++++|.+++..
T Consensus 52 ~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~ 116 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQS-----------LPNGVFNKLTSLTYLNLSTNQLQSLPNG----VFDKLTQLKELALNTNQLQSLP 116 (208)
T ss_dssp TTCSEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCcEEECCCCccCc-----------cChhhcCCCCCcCEEECCCCcCCccCHh----HhcCccCCCEEEcCCCcCcccC
Confidence 4688999998 7765 4556688999999999999999997666 7899999999999999999777
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..+..+++|++|++++|++++ ++...+..+++|++|++++|.+.+.
T Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 117 DGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred HhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeecC
Confidence 7778999999999999999998 6664689999999999999988764
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=4.6e-15 Score=127.40 Aligned_cols=120 Identities=31% Similarity=0.432 Sum_probs=79.6
Q ss_pred CCCCCCCCCceecCC-----------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccc
Q 027045 76 SDCCDDWEGVKCNAT-----------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE 143 (229)
Q Consensus 76 ~~~C~~w~gv~C~~~-----------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p 143 (229)
...| .|.|+ |+.. ..+++.|++++ ++.+ +....|.++++|++|++++|++++..|
T Consensus 27 ~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 27 SLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----------ISNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----------cCHHHhccCCCCCEEECCCCccCccCH
Confidence 4567 88876 6431 23678888888 7665 344456667777777777777777655
Q ss_pred cccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCC
Q 027045 144 NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGN 213 (229)
Q Consensus 144 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N 213 (229)
. .|..+++|++|++++|.+++..+..++.+++|++|++++|++++ +|. ..+.++++|++|++++|
T Consensus 94 ~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 94 D----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp T----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEES
T ss_pred h----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCC
Confidence 5 66777777777777777765444446667777777777777765 543 35666777777777766
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=2.1e-14 Score=119.17 Aligned_cols=119 Identities=28% Similarity=0.280 Sum_probs=101.7
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ .+.+ ...+..+++|++|++++|.+++..+. .|..+++|++|++++|.+++..
T Consensus 63 ~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~ 125 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-------------ISALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLP 125 (272)
T ss_dssp TTCCEEECTTSCCCC-------------CGGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCcEEECCCCCCCC-------------chhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccC
Confidence 4688899998 7765 23578899999999999999997776 7899999999999999999877
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC--cccCCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS--LTRLGRLL 228 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~ 228 (229)
+..+..+++|++|++++|++++ +|...+.++++|++|++++|++++... +..+.+|.
T Consensus 126 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 126 DGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 7778999999999999999998 665468999999999999999998743 45555553
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=5.5e-15 Score=113.86 Aligned_cols=110 Identities=25% Similarity=0.246 Sum_probs=71.3
Q ss_pred CcEEEEecCC-Ccc-ccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIK-FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169 (229)
Q Consensus 92 ~~v~~L~L~~-~l~-~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~ 169 (229)
.+++.|++++ ++. +.+| ..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~-----------~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIE-----------GLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCS-----------SCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCCSC
T ss_pred ccCCEEECCCCCCChhhHH-----------HHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCchH
Confidence 4577777777 665 3222 2345566777777777777664 3 566677777777777777655
Q ss_pred CcccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCCC
Q 027045 170 ILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 170 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
+|..+..+++|++|++++|++++ +|. ..+..+++|++|++++|++++.+
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred HHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 66666666777777777777766 431 25666777777777777766654
No 31
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=2.2e-14 Score=111.79 Aligned_cols=106 Identities=23% Similarity=0.207 Sum_probs=90.4
Q ss_pred EEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045 95 MQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY 173 (229)
Q Consensus 95 ~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 173 (229)
+.+++++ ++.. +|. . + .++|++|++++|+|++..|. .|..+++|++|+|++|++++..+..
T Consensus 15 ~~l~~~~n~l~~-iP~----------~-~--~~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~ 76 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPA----------G-I--PTDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGV 76 (174)
T ss_dssp SEEECCSSCCSS-CCS----------C-C--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cEEEeCCCCCCc-cCC----------C-c--CCCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhH
Confidence 4688888 6643 332 1 1 27899999999999998888 8999999999999999999766666
Q ss_pred ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
|..+++|++|+|++|+|++ +|...|.++++|++|++++|++...+
T Consensus 77 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred hCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeCCCCccccc
Confidence 8999999999999999998 77646999999999999999998764
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.58 E-value=6.8e-15 Score=132.92 Aligned_cols=119 Identities=29% Similarity=0.375 Sum_probs=84.1
Q ss_pred CCCCCCCceecCC-----------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccc
Q 027045 78 CCDDWEGVKCNAT-----------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR 145 (229)
Q Consensus 78 ~C~~w~gv~C~~~-----------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 145 (229)
.| .|.|+ |+.. ..+++.|++++ ++.+ +.+..|.++++|++|++++|++++..|.
T Consensus 3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~- 68 (549)
T 2z81_A 3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----------IGHGDLRACANLQVLILKSSRINTIEGD- 68 (549)
T ss_dssp EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----------ECSSTTSSCTTCCEEECTTSCCCEECTT-
T ss_pred cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCc-----------cChhhhhcCCcccEEECCCCCcCccChh-
Confidence 47 88887 7642 23688899998 7765 3445567777777777777777776666
Q ss_pred cccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC-CCChhhcCCCCCCCEEeccCCc
Q 027045 146 AYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNF 214 (229)
Q Consensus 146 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~ 214 (229)
.|..+++|++|++++|.+++..|..++.+++|++|++++|++++ .+|. .++++++|++|++++|.
T Consensus 69 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 69 ---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp ---TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESS
T ss_pred ---hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCc
Confidence 67777777777777777776666667777777777777777764 2344 56777777777777776
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=1.8e-14 Score=119.51 Aligned_cols=94 Identities=23% Similarity=0.242 Sum_probs=61.4
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC-CCChhh
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG-SRTKQG 198 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~ 198 (229)
..|.++++|++|++++|++++..+. .|..+++|++|++++|.+++..+..++.+++|++|++++|++++ .+|. .
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~ 144 (276)
T 2z62_A 70 GAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-Y 144 (276)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-G
T ss_pred HHccCCcCCCEEECCCCccCccChh----hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch-h
Confidence 3456666666666666666665555 66666677777777776665555556666777777777777665 2354 5
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
+.++++|++|++++|++++.
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEE
T ss_pred hccCCCCCEEECCCCCCCcC
Confidence 66677777777777766654
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=3.4e-14 Score=118.38 Aligned_cols=104 Identities=24% Similarity=0.281 Sum_probs=74.1
Q ss_pred CcccCCCCCCcEEeCCCCc-CCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045 119 MSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ 197 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 197 (229)
+..|..+++|++|++++|. ++...|. .|..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~ 147 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDD 147 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHh
Confidence 4456777777777777776 6665566 67777788888888887776667777777888888888888776 5543
Q ss_pred hcCCCCCCCEEeccCCcCCCCCC--cccCCCC
Q 027045 198 GLANLRYLQVLDLSGNFNITSGS--LTRLGRL 227 (229)
Q Consensus 198 ~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L 227 (229)
.+.++++|++|++++|++++.+. +..+.+|
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 57777888888888887776532 4444444
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=7.8e-15 Score=134.65 Aligned_cols=95 Identities=23% Similarity=0.172 Sum_probs=62.7
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
+..|..+++|++|+|++|.+++..|. .|+.+++|++|++++|.+++..+..|+.+++|++|+|++|.+++..|. .
T Consensus 92 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~ 166 (597)
T 3oja_B 92 TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-T 166 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-T
T ss_pred hHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-h
Confidence 34566667777777777777776555 566777777777777777644444456677777777777777663333 5
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
|.++++|++|++++|.+++.
T Consensus 167 ~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 167 FQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp TTTCTTCCEEECTTSCCSBC
T ss_pred hhcCCcCcEEECcCCCCCCc
Confidence 66777777777777776665
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=2.2e-14 Score=127.24 Aligned_cols=132 Identities=23% Similarity=0.203 Sum_probs=67.9
Q ss_pred CcEEEEecCC-CccccccCCCCC-------------ccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCc
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGS-------------ALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK 157 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~-------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~ 157 (229)
..++.|+|++ ++.+..+..... +..+.+..|.++++|++|+|++|++++..+. .|..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh----hhcccCCCC
Confidence 4688899988 776522221110 0112223344444455555555554443333 344455555
Q ss_pred EEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 158 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
+|++++|.++...+..|..+++|+.|++++|+..+.++...|.++++|++|++++|++++.+.+..+.+|
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 220 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL 220 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccc
Confidence 5555555554333334445555555555543222224443566777777777777777776655555554
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=1.3e-14 Score=128.21 Aligned_cols=123 Identities=25% Similarity=0.288 Sum_probs=77.4
Q ss_pred CcEEEEecCC-CccccccCCCCCc---c-----------ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSA---L-----------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQL 156 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~---~-----------~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L 156 (229)
.+++.|++++ .+.+..|...... . .+....|.++++|++|++++|++++..|. .|..+++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG----AFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTTC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh----hccCcccC
Confidence 4689999999 7776433322211 0 22234466667777777777777666566 66667777
Q ss_pred cEEEcCCCCCCCCCccc--ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 157 KMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 157 ~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
++|++++|.+++..|.. +..+++|++|++++|++++..|...+.++++|++|++++|.+++.
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 77777777766544443 666677777777777776644442266677777777777776654
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=3.4e-14 Score=129.89 Aligned_cols=109 Identities=25% Similarity=0.278 Sum_probs=57.5
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ .+.+ +....|.++++|++|++++|+++++.|. .|..+++|++|++++|.+++..
T Consensus 32 ~~l~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI-----------LKSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCC
T ss_pred CCcCEEECCCCCcCE-----------eChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccC
Confidence 5688899988 7765 3333444555555555555555554444 4555555555555555555444
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNI 216 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~ 216 (229)
|..|+++++|++|++++|++++ ++...++++++|++|++++|.++
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCC
T ss_pred hhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCccc
Confidence 4455555555555555555544 32223445555555555555544
No 39
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=3e-14 Score=112.50 Aligned_cols=115 Identities=22% Similarity=0.213 Sum_probs=93.6
Q ss_pred EEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045 95 MQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY 173 (229)
Q Consensus 95 ~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 173 (229)
+.+++++ ++.. +|. . + ..++++|++++|+|++..+. ..|..+++|++|++++|.+++..|..
T Consensus 11 ~~l~~s~~~l~~-ip~----------~-~--~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~ 73 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPR----------D-I--PLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEPNA 73 (192)
T ss_dssp TEEECTTSCCSS-CCS----------C-C--CTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred CEEEcCCCCcCc-Ccc----------C-C--CCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcCHhH
Confidence 5688988 6643 332 1 1 13899999999999997653 03889999999999999999988999
Q ss_pred ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC--CCcccCCCC
Q 027045 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS--GSLTRLGRL 227 (229)
Q Consensus 174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L 227 (229)
|..+++|++|+|++|++++ ++...|.++++|++|++++|++++. ..+..+.+|
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp TTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred cCCcccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 9999999999999999998 5544799999999999999999987 345555554
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=3.8e-14 Score=118.09 Aligned_cols=106 Identities=26% Similarity=0.296 Sum_probs=81.3
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
+.+..|..+++|++|++++|++++..|. .|..+++|++|++++|.+++..+..++.+++|++|++++|++++ +|.
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~ 170 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPE 170 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCH
Confidence 3345677788888888888888887676 78888888888888888886666668888888888888888887 665
Q ss_pred hhcCCCCCCCEEeccCCcCCCC--CCcccCCCC
Q 027045 197 QGLANLRYLQVLDLSGNFNITS--GSLTRLGRL 227 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L 227 (229)
..+.++++|++|++++|.+++. ..+..+.+|
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 4688888888888888888776 234444444
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=127.86 Aligned_cols=122 Identities=26% Similarity=0.296 Sum_probs=67.2
Q ss_pred CCCCceecC---------CCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045 81 DWEGVKCNA---------TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF 150 (229)
Q Consensus 81 ~w~gv~C~~---------~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 150 (229)
.|..|.|.. ....++.|++++ ++.+ +.+..|.++++|++|+|++|.+++..|. .|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~ 76 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-----------LNQDEFASFPHLEELELNENIVSAVEPG----AF 76 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEECTT----TT
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-----------ECHhHccCCCCCCEEECCCCccCEeChh----hh
Confidence 356677753 123677888888 7765 3334455555555555555555555455 55
Q ss_pred CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.++++|++|++++|.++...+..|.++++|++|+|++|++++..|. .|.++++|++|++++|.+++.
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCcccee
Confidence 5555555555555555543334455555555555555555542232 455555555555555554443
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=126.82 Aligned_cols=104 Identities=26% Similarity=0.212 Sum_probs=60.5
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..|.++++|++|+|++|++++..+. .|..+++|++|++++|.++...+..|..+++|++|++++|+..+.++...|
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred hhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence 3455555555555555555554444 455555566666666655544444555556666666655333333554456
Q ss_pred CCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 200 ANLRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
.++++|++|++++|.++.++.+..+.+|
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L 209 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIPNLTPLIKL 209 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCCCCTTCSSC
T ss_pred hcccccCeecCCCCcCccccccCCCccc
Confidence 7777777777777777776655555544
No 43
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.6e-14 Score=114.33 Aligned_cols=102 Identities=24% Similarity=0.270 Sum_probs=87.2
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCc-CCCCCChhh
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEGSRTKQG 198 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~~ 198 (229)
..+..+++|++|++++|++++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|+ ++. +| .
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~--~ 154 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM--P 154 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG--G
T ss_pred hhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH--h
Confidence 4577889999999999999987777 88999999999999999987788889999999999999998 665 66 4
Q ss_pred cCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITSGSLTRLGRLL 228 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~ 228 (229)
+.++++|++|++++|.+++...+..+++|.
T Consensus 155 l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~ 184 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVHDYRGIEDFPKLN 184 (197)
T ss_dssp GGGCSSCCEEECTTBCCCCCTTGGGCSSCC
T ss_pred hcCCCCCCEEECCCCCCcChHHhccCCCCC
Confidence 888999999999999998887666666654
No 44
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=2.8e-14 Score=123.22 Aligned_cols=123 Identities=21% Similarity=0.216 Sum_probs=104.7
Q ss_pred CCCCceecC---------CCCcEEEEecCC-CccccccCCCCCccccCCcccC-CCCCCcEEeCCCCcCCCccccccccc
Q 027045 81 DWEGVKCNA---------TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFH-PFEELQRLDLPGNWFTGIYENRAYDS 149 (229)
Q Consensus 81 ~w~gv~C~~---------~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~ 149 (229)
.+..+.|.. ....++.|+|++ ++.+ +....|. .+++|++|+|++|+|+++.+. .
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-----------l~~~~~~~~l~~L~~L~L~~N~i~~i~~~----~ 83 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-----------LRAEWTPTRLTNLHSLLLSHNHLNFISSE----A 83 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-----------ECTTSSSSCCTTCCEEECCSSCCCEECTT----T
T ss_pred CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-----------cChhhhhhcccccCEEECCCCcCCccChh----h
Confidence 566677754 123477899998 7765 5556676 899999999999999998777 8
Q ss_pred cCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045 150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 150 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
|..+++|++|+|++|+++...+..|..+++|++|+|++|++++ ++...|.++++|++|+|++|++++++
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeC
Confidence 9999999999999999997777789999999999999999998 54448999999999999999999874
No 45
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=2.9e-14 Score=122.00 Aligned_cols=95 Identities=23% Similarity=0.176 Sum_probs=84.7
Q ss_pred cCCCCCCcEEeCCC-CcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 122 FHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
+..+++|++|+|++ |+|+++.+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++ +|...+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence 77888999999996 999998777 89999999999999999999888899999999999999999998 7764566
Q ss_pred CCCCCCEEeccCCcCCCCCCcc
Q 027045 201 NLRYLQVLDLSGNFNITSGSLT 222 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~~~~~ 222 (229)
.++ |+.|+|.+|++...+.+.
T Consensus 102 ~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SCC-CCEEECCSSCCCCCGGGH
T ss_pred cCC-ceEEEeeCCCccCCCccH
Confidence 665 999999999998765443
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=3.6e-14 Score=125.28 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=59.8
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
+..|..+++|++|++++|.+++..|. .|..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|...
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~ 390 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGI 390 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGG----GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTT
T ss_pred hhHhcCcccCCEEECCCCccCCcChh----HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhH
Confidence 33455666666666666666665555 56666666666666666665556666666666666666666665 44434
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..+++|++|++++|++++.
T Consensus 391 ~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTTCTTCCEEECCSSCBCCC
T ss_pred hccCCcccEEEccCCCcccC
Confidence 56666666666666666654
No 47
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=109.59 Aligned_cols=97 Identities=27% Similarity=0.344 Sum_probs=85.4
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 205 (229)
++|++|++++|+|+. +|. .|..+++|++|++++|.+++..+..|..+++|++|+|++|++++ ++...|.++++|
T Consensus 31 ~~l~~L~L~~n~i~~-ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL-VPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCS-CCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCch-hHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCC
Confidence 579999999999996 667 89999999999999999998888889999999999999999998 655479999999
Q ss_pred CEEeccCCcCCCCC--CcccCCCCC
Q 027045 206 QVLDLSGNFNITSG--SLTRLGRLL 228 (229)
Q Consensus 206 ~~L~L~~N~l~~~~--~~~~l~~L~ 228 (229)
++|+|++|+++..+ .+..+.+|.
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CEEECCCCCCCeeChhhhhcCcccc
Confidence 99999999999874 355555553
No 48
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.9e-13 Score=106.10 Aligned_cols=114 Identities=24% Similarity=0.262 Sum_probs=92.9
Q ss_pred EEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045 95 MQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY 173 (229)
Q Consensus 95 ~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 173 (229)
+.+++++ ++.. +... -.++|++|++++|++++..+. .|..+++|++|++++|.+++..+..
T Consensus 10 ~~l~~~~~~l~~-----------~p~~---~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 10 TEIRCNSKGLTS-----------VPTG---IPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp TEEECCSSCCSS-----------CCTT---CCTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred CEEEecCCCCcc-----------CCCC---CCCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhH
Confidence 5677877 6654 2211 236899999999999997766 7899999999999999999766677
Q ss_pred ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC--cccCCCC
Q 027045 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS--LTRLGRL 227 (229)
Q Consensus 174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L 227 (229)
+..+++|++|++++|++++ +|...+..+++|++|++++|++++.+. +..+.+|
T Consensus 72 ~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ccCCCccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence 8999999999999999998 665468899999999999999998743 4445554
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=1.5e-13 Score=115.46 Aligned_cols=93 Identities=25% Similarity=0.192 Sum_probs=68.6
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+..+++|++|++++|++++..+. .|..+++|++|++++|++++..+..|..+++|+.|+|++|++++ +|...|.
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 169 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLN 169 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTT
T ss_pred hhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhc
Confidence 456677777778888877776666 67777778888888887776656666777778888888887776 6654567
Q ss_pred CCCCCCEEeccCCcCCCC
Q 027045 201 NLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~ 218 (229)
++++|++|++++|+++.+
T Consensus 170 ~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 170 GLENLDTLLLQENSLYTI 187 (290)
T ss_dssp TCTTCCEEECCSSCCCCC
T ss_pred CcCCCCEEECCCCcCCcc
Confidence 777777788777777765
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.52 E-value=6.4e-14 Score=128.08 Aligned_cols=111 Identities=22% Similarity=0.146 Sum_probs=79.1
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
..++.|++++ .+.+ +.+..|.++++|++|++++|++++..|. .|..+++|++|++++|.+++..
T Consensus 33 ~~l~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT-----------IQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp TTCCEEECTTCCCSE-----------ECTTTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCSEEC
T ss_pred CcCcEEEccCCccCc-----------CChhHhccCccceEEECCCCccceeChh----hccCccccCeeeCCCCcccccC
Confidence 4688899998 7765 4455667777777777777777776666 6777777777777777777666
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
|..++.+++|++|++++|++++ ++...++++++|++|++++|.+++.
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred hhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCccccc
Confidence 6677777777777777777776 4323566777777777777777664
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.51 E-value=5.9e-14 Score=130.05 Aligned_cols=122 Identities=21% Similarity=0.164 Sum_probs=61.3
Q ss_pred CcEEEEecCC-CccccccCCCCC-------------ccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCc
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGS-------------ALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK 157 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~-------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~ 157 (229)
.+++.|++++ ++.+..+..... ...+.+..|.++++|++|++++|++++..+. .|..+++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh----hhccCCCCC
Confidence 4688888888 666522111100 0011223344455555555555555553333 455555555
Q ss_pred EEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 158 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+|++++|.+++..|..|+.+++|++|++++|++++..|. .+.++++|++|++++|.+++.
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCB
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccccc
Confidence 555555555544444555555555555555555553332 455555555555555555544
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=7.1e-14 Score=115.88 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=84.0
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
.++.|++++ ++.+ +....|.++++|++|++++|++++..+. .|..+++|++|++++|.+++..+
T Consensus 29 ~l~~L~ls~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 29 STKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TCCEEECTTCCCCE-----------ECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECT
T ss_pred CccEEECCCCcccc-----------cCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccCh
Confidence 577788877 6665 4445677788888888888888876666 77888888888888888887666
Q ss_pred ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
..+..+++|++|++++|++++ ++...+.++++|++|++++|.+++.
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~ 139 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF 139 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCC
T ss_pred hhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCcccee
Confidence 778888888888888888877 4443577888888888888888763
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=6.1e-14 Score=127.92 Aligned_cols=101 Identities=26% Similarity=0.245 Sum_probs=88.5
Q ss_pred CCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ 197 (229)
Q Consensus 118 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 197 (229)
.+..|..+++|++|+|++|++++..|. .|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|.
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~----~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 560 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ- 560 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS-
T ss_pred CchhhhhccccCEEECCCCccCCcChH----HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH-
Confidence 345788899999999999999998888 899999999999999999988888899999999999999999985554
Q ss_pred hcCCC-CCCCEEeccCCcCCCCCCccc
Q 027045 198 GLANL-RYLQVLDLSGNFNITSGSLTR 223 (229)
Q Consensus 198 ~~~~l-~~L~~L~L~~N~l~~~~~~~~ 223 (229)
.+..+ ++|++|++++|+++..+.+.+
T Consensus 561 ~l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 561 ELQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp CTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred HHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 78887 689999999999988765443
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=124.90 Aligned_cols=94 Identities=23% Similarity=0.242 Sum_probs=50.7
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC-CCChhh
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG-SRTKQG 198 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~ 198 (229)
..|.++++|++|++++|++++..|. .|.++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|. .
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~ 144 (570)
T 2z63_A 70 GAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-Y 144 (570)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-G
T ss_pred ccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh-h
Confidence 3455555555555555555554444 55555555555555555554333345555555555555555554 2344 4
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
++++++|++|++++|.+++.
T Consensus 145 ~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 145 FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp GGGCTTCCEEECTTSCCCEE
T ss_pred hcccCCCCEEeCcCCcccee
Confidence 55555566666655555543
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=9e-14 Score=118.66 Aligned_cols=130 Identities=20% Similarity=0.192 Sum_probs=102.8
Q ss_pred CcEEEEecCC-CccccccCCCCC------------cccc---------CCcccCCCCCCcEEeCCCCcCCCccccccccc
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGS------------ALLL---------NMSLFHPFEELQRLDLPGNWFTGIYENRAYDS 149 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~------------~~~l---------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 149 (229)
.+++.|++++ ++.+.+|..... +..+ -+..+..+++|++|++++|++++ +|. .
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~----~ 224 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGP----A 224 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCG----G
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cch----h
Confidence 4688899998 888877765421 1111 12457788899999999999998 565 7
Q ss_pred cCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC--CCcccCCCC
Q 027045 150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS--GSLTRLGRL 227 (229)
Q Consensus 150 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L 227 (229)
+..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|. .+.++++|++|++++|++.+. ..+..+.+|
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 88899999999999999889999999999999999999998888887 789999999999999887765 234444443
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=9.9e-14 Score=132.11 Aligned_cols=132 Identities=23% Similarity=0.199 Sum_probs=97.9
Q ss_pred CCCCceecCCCCcEEEEecCC-CccccccCCCCC--------------ccccCCcccCCCCCCcEEeCCCCcCCCccccc
Q 027045 81 DWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGS--------------ALLLNMSLFHPFEELQRLDLPGNWFTGIYENR 145 (229)
Q Consensus 81 ~w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~--------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 145 (229)
.|..|.+ ...+++.|+|++ .+.+..+..... ...+.+..|.++++|++|+|++|++++..|.
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~- 91 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD- 91 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-
Confidence 6777776 457888999998 776543332221 1123356678888888888888888887777
Q ss_pred cccccCCCCCCcEEEcCCCCCCCCCccc--ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 146 AYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 146 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.|.++++|++|++++|.+++.+|.. ++.+++|++|+|++|.+++..+...|+++++|++|++++|.+++.
T Consensus 92 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 92 ---AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp ---SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred ---HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 8888888888888888888766654 788888888888888888744433688888888888888888775
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=121.33 Aligned_cols=90 Identities=27% Similarity=0.312 Sum_probs=48.5
Q ss_pred CCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ 197 (229)
Q Consensus 118 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 197 (229)
....|.++++|++|+|++|+++++.+. .|.++++|++|++++|.++...+..|..+++|++|+|++|+++. ++..
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~ 154 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSY 154 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTT
T ss_pred CHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHH
Confidence 334455555555555555555554444 55555555555555555554444445555555555555555554 4333
Q ss_pred hcCCCCCCCEEeccC
Q 027045 198 GLANLRYLQVLDLSG 212 (229)
Q Consensus 198 ~~~~l~~L~~L~L~~ 212 (229)
.|.++++|++|++++
T Consensus 155 ~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGE 169 (440)
T ss_dssp TTTTCTTCCEEECCC
T ss_pred HhhhCcccCEeCCCC
Confidence 455555555555555
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.49 E-value=1.6e-14 Score=122.48 Aligned_cols=120 Identities=20% Similarity=0.200 Sum_probs=81.4
Q ss_pred CcEEEEecC-C-CccccccCCCCCcc-------------ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCC
Q 027045 92 RRVMQLSLN-E-TIKFNYSSGSGSAL-------------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQL 156 (229)
Q Consensus 92 ~~v~~L~L~-~-~l~~~~~~~~~~~~-------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L 156 (229)
.+++.|+++ . ++.+.+|....... ...+..|.++++|++|++++|.+++.+|. .+..+++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L 151 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNL 151 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCC
Confidence 356778887 3 66666665433221 12344577788888888888888877777 78888888
Q ss_pred cEEEcCCCCCCCCCcccccCCC-CccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCC
Q 027045 157 KMLNLGDNFFNDSILPYLNTLT-SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 157 ~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~ 217 (229)
++|++++|.+++.+|..+..++ +|++|++++|++++.+|. .+..+. |++|++++|.+++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEEE
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCcccC
Confidence 8888888888877787777776 777777777777754554 455444 5555555555543
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.48 E-value=1.9e-13 Score=114.88 Aligned_cols=94 Identities=30% Similarity=0.377 Sum_probs=60.9
Q ss_pred cccCCCCCCcEEeCCCCcCCC-ccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 120 SLFHPFEELQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
..+..+++|++|++++|.+++ ..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++...
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~ 218 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFP 218 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGG
T ss_pred hhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhh
Confidence 345566666777777666665 4455 66666677777777777666556666666677777777777666 43335
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..+++|++|++++|++++.
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBC
T ss_pred ccCcccCCEeECCCCCCccc
Confidence 66666777777777766654
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=5.3e-14 Score=114.36 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=57.9
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCc-CCCccccccccccCCCCCCcEEEcCC-CCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGD-NFFND 168 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~ 168 (229)
..++.|++++ ++.+ +....|..+++|++|++++|+ ++++.+. .|..+++|++|++++ |.+++
T Consensus 31 ~~l~~L~l~~n~l~~-----------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT-----------IPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp TTCCEEEEESCCCSE-----------ECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCE
T ss_pred CcccEEEEeCCcceE-----------ECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeE
Confidence 4678888888 7665 333345555555555555554 5554444 455555555555555 55554
Q ss_pred CCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC---EEeccCC-cCCCC
Q 027045 169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ---VLDLSGN-FNITS 218 (229)
Q Consensus 169 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~---~L~L~~N-~l~~~ 218 (229)
..+..|..+++|++|++++|++++ +|. +..+++|+ +|++++| .++++
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEE
T ss_pred cCHHHhCCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhc
Confidence 444445555555555555555554 442 44444444 5555554 44443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=2e-13 Score=121.01 Aligned_cols=93 Identities=25% Similarity=0.230 Sum_probs=61.5
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCC-CCCCCCCcccccCCCCccEEeccCCcCCCCCChh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ 197 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 197 (229)
...|..+++|++|++++|+++.+.+. .|..+++|++|++++ |.++...+..|..+++|++|++++|++++ +|.
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~- 213 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN- 213 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-
T ss_pred hhhhcccCCCCEEECCCCCcceeCHh----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-
Confidence 34566677777777777777765555 667777777777776 34443333456677777777777777766 553
Q ss_pred hcCCCCCCCEEeccCCcCCCC
Q 027045 198 GLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 198 ~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..+++|++|++++|.+++.
T Consensus 214 -~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 214 -LTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp -CTTCTTCCEEECTTSCCSEE
T ss_pred -ccccccccEEECcCCcCccc
Confidence 66677777777777777665
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=3.3e-13 Score=114.81 Aligned_cols=119 Identities=28% Similarity=0.399 Sum_probs=96.6
Q ss_pred CCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccc
Q 027045 79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD 148 (229)
Q Consensus 79 C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 148 (229)
| .|..+.|... ...++.|++++ ++.+ +.+..|.++++|++|++++|++++..|.
T Consensus 33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 96 (332)
T 2ft3_A 33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----------LRKDDFKGLQHLYALVLVNNKISKIHEK---- 96 (332)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECGG----
T ss_pred c-cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----------cCHhHhhCCCCCcEEECCCCccCccCHh----
Confidence 5 6888888541 23577888887 6664 5556788999999999999999998787
Q ss_pred ccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCC
Q 027045 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 149 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~ 217 (229)
.|..+++|++|++++|.++ .+|..+. ++|++|++++|++++ +|...+.++++|++|++++|.++.
T Consensus 97 ~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBG
T ss_pred HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCcccc
Confidence 8999999999999999998 5666554 789999999999987 665468899999999999998864
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=1.1e-13 Score=126.58 Aligned_cols=111 Identities=24% Similarity=0.237 Sum_probs=99.4
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ .+.+ +.+..|.++++|++|++++|++++..|. .|.++++|++|++++|.+++..
T Consensus 56 ~~L~~L~Ls~n~l~~-----------i~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 56 SELQWLDLSRCEIET-----------IEDKAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TTCCEEECTTCCCCE-----------ECTTTTTTCTTCCEEECTTCCCCCCCTT----SSTTCTTCCEEECTTSCCCCSS
T ss_pred ccCcEEeCCCCcccc-----------cCHHHhhchhhcCEeECCCCcccccChh----hcCCcccCCEEEccCCcccccc
Confidence 4688899998 7765 5567789999999999999999998888 9999999999999999999777
Q ss_pred cccccCCCCccEEeccCCcCCC-CCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..++.+++|++|++++|++++ .+|. .++++++|++|++++|++++.
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEE
T ss_pred ccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceec
Confidence 7889999999999999999985 5687 899999999999999999876
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.48 E-value=2.9e-13 Score=114.97 Aligned_cols=120 Identities=23% Similarity=0.291 Sum_probs=86.4
Q ss_pred CCCCCCCceecC---------CCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccc
Q 027045 78 CCDDWEGVKCNA---------TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAY 147 (229)
Q Consensus 78 ~C~~w~gv~C~~---------~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 147 (229)
.| .|+.+.|.. ....++.|++++ ++.+ +....|.++++|++|++++|++++..|.
T Consensus 30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 94 (330)
T 1xku_A 30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----------IKDGDFKNLKNLHTLILINNKISKISPG--- 94 (330)
T ss_dssp EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----------BCTTTTTTCTTCCEEECCSSCCCCBCTT---
T ss_pred cC-CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----------eChhhhccCCCCCEEECCCCcCCeeCHH---
Confidence 35 677788753 123577888888 7665 4445678888888888888888887777
Q ss_pred cccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCC
Q 027045 148 DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 148 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~ 217 (229)
.|..+++|++|++++|.++ .+|..+. ++|++|++++|++++ ++...+.++++|++|++++|.+..
T Consensus 95 -~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 95 -AFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp -TTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCG
T ss_pred -HhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCc
Confidence 8888888888888888887 4555443 577777777777776 444356777777777777776653
No 65
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=9.9e-14 Score=107.81 Aligned_cols=107 Identities=24% Similarity=0.265 Sum_probs=70.4
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCC-CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPF-EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.++.|++++ ++.. + ..+..+ ++|++|++++|.+++. . .+..+++|++|++++|.+++..
T Consensus 20 ~L~~L~l~~n~l~~-----------i--~~~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-----------I--ENLGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp SCEEEECTTSCCCS-----------C--CCGGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSCCCEEC
T ss_pred CceEEEeeCCCCch-----------h--HHhhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCcccccC
Confidence 467777777 5553 1 112333 3777777777777774 3 6777777777777777777543
Q ss_pred cccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
+..+..+++|++|++++|+++. +|. ..+..+++|++|++++|+++..+
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred cchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 3444677777777777777765 553 24667777777777777776654
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=2.4e-13 Score=114.08 Aligned_cols=98 Identities=28% Similarity=0.311 Sum_probs=86.8
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
+.+..|..+++|++|++++|++++..+. .|..+++|++|++++|+++...+..+..+++|++|+|++|+++. +|.
T Consensus 115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~ 189 (290)
T 1p9a_G 115 LPLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189 (290)
T ss_dssp CCSSTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred cCHHHHcCCCCCCEEECCCCCCCccChh----hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cCh
Confidence 4456789999999999999999997776 78999999999999999996666677899999999999999997 988
Q ss_pred hhcCCCCCCCEEeccCCcCCCCCC
Q 027045 197 QGLANLRYLQVLDLSGNFNITSGS 220 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N~l~~~~~ 220 (229)
.+..+.+|+++++++|++...+.
T Consensus 190 -~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 190 -GFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp -TTTTTCCCSEEECCSCCBCCSGG
T ss_pred -hhcccccCCeEEeCCCCccCcCc
Confidence 67788999999999999987543
No 67
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=9.9e-14 Score=109.73 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=97.9
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
+++.|++++ .+.. +. .+..+++|++|++++|.++.. . .+..+++|++|++++|.+++..|
T Consensus 45 ~L~~L~l~~n~i~~-----------l~--~l~~l~~L~~L~l~~n~~~~~--~----~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 45 SLTYITLANINVTD-----------LT--GIEYAHNIKDLTINNIHATNY--N----PISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp TCCEEEEESSCCSC-----------CT--TGGGCTTCSEEEEESCCCSCC--G----GGTTCTTCCEEEEECTTCBGGGS
T ss_pred CccEEeccCCCccC-----------hH--HHhcCCCCCEEEccCCCCCcc--h----hhhcCCCCCEEEeECCccCcccC
Confidence 578888888 6653 22 467889999999999987752 3 78899999999999999998788
Q ss_pred ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCc-CCCCCCcccCCCCC
Q 027045 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNF-NITSGSLTRLGRLL 228 (229)
Q Consensus 172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~ 228 (229)
..+..+++|++|++++|++++..|. .+..+++|++|++++|+ ++..+.+..+.+|.
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~ 162 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLPELK 162 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCGGGGGCSSCC
T ss_pred hhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccHhhcCCCCCC
Confidence 8999999999999999999985665 79999999999999998 88876666666553
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=3.3e-13 Score=117.19 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=97.5
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
.++.+++++ .+.. ++...|..+++|++|++++|.+++..+. .|..+++|++|++++|.+++..|
T Consensus 46 ~l~~l~l~~~~l~~-----------l~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 46 NQKIVTFKNSTMRK-----------LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp CCSEEEEESCEESE-----------ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCT
T ss_pred CceEEEecCCchhh-----------CChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCH
Confidence 455666666 4443 5556678889999999999999997777 89999999999999999998778
Q ss_pred ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG--SLTRLGRL 227 (229)
Q Consensus 172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L 227 (229)
..++.+++|++|++++|+++. +|...|.++++|++|++++|.+++.. .+..+.+|
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred HHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 889999999999999999997 77645789999999999999998773 35555554
No 69
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=7.3e-14 Score=131.23 Aligned_cols=170 Identities=16% Similarity=0.084 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCcEEEEecCC-CccccccCCCC---
Q 027045 37 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSG--- 112 (229)
Q Consensus 37 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~C~~w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~--- 112 (229)
.+.+.+++.+++.+.... .+. ....|.. . ....+ .|.++.+. ..+++.++|.+ .+.. .+....
T Consensus 130 ~~~~~~~l~~~~~~~~~~---~~~--~~~~~~~---~-~~~~~-~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l 196 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDS---KTA--KKQQPTG---D-STPSG-TATNSAVS--TPLTPKIELFANGKDE-ANQALLQHK 196 (727)
T ss_dssp --CCCHHHHHHHHHHHHH---HTT--C-----------------------------------------------------
T ss_pred cccchhhhhhhhhhcccc---cCc--ccCCCcC---C-CCccc-cCCCceec--CCccceEEeeCCCCCc-chhhHhhcC
Confidence 345778899999877521 111 3445655 1 34455 78888774 45677777755 3332 111100
Q ss_pred -----Cc---------cccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCC
Q 027045 113 -----SA---------LLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLT 178 (229)
Q Consensus 113 -----~~---------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 178 (229)
.+ ..+.+..|..++.|+.|+|++|.+.. +|. .+..+++|++|+|++|.|+ .+|..|+.++
T Consensus 197 ~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 270 (727)
T 4b8c_D 197 KLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLS 270 (727)
T ss_dssp -------------------------CCCCCCEEECTTSCCSC-CCG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred ccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CCh----hhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence 00 01223446666777777777777774 444 5556777777777777776 5666677777
Q ss_pred CccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC-CcccCCCC
Q 027045 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG-SLTRLGRL 227 (229)
Q Consensus 179 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L 227 (229)
+|++|+|++|+|+. +|. .|+++++|++|+|++|.|+.++ .+..+.+|
T Consensus 271 ~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 271 NLRVLDLSHNRLTS-LPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp TCCEEECTTSCCSS-CCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred CCCEEeCcCCcCCc-cCh-hhcCCCCCCEEECCCCCCCccChhhhcCCCc
Confidence 77777777777764 665 5667777777777777766553 34444444
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=4.3e-13 Score=123.08 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=90.5
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
++...|..+++|++|++++|.+++..|. .|..+++|++|++++|.+++..|..|+.+++|++|+|++|.+++ +|.
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~ 140 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPR 140 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCH
Confidence 5566678889999999999999998887 89999999999999999998888888999999999999999997 776
Q ss_pred hhcCCCCCCCEEeccCCcCCCCC--CcccCCCC
Q 027045 197 QGLANLRYLQVLDLSGNFNITSG--SLTRLGRL 227 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L 227 (229)
..|+++++|++|++++|.+++.. .+..+.+|
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 46789999999999999998874 35555554
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=2.1e-13 Score=114.62 Aligned_cols=97 Identities=27% Similarity=0.270 Sum_probs=87.3
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
+..+..+++|++|++++|++++..|. .|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|. .
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~ 242 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-E 242 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS-S
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH-H
Confidence 45688899999999999999998788 899999999999999999987777899999999999999999986665 7
Q ss_pred cCCCC-CCCEEeccCCcCCCCCC
Q 027045 199 LANLR-YLQVLDLSGNFNITSGS 220 (229)
Q Consensus 199 ~~~l~-~L~~L~L~~N~l~~~~~ 220 (229)
+..++ +|++|++++|++++.+.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGG
T ss_pred HHhhhccCCEEEccCCCeecccC
Confidence 88885 99999999999988654
No 72
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1e-13 Score=106.64 Aligned_cols=110 Identities=23% Similarity=0.176 Sum_probs=94.6
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ .+.+ + ..+..+++|++|++++|++++.+|. .+..+++|++|++++|.+++..
T Consensus 49 ~~L~~L~l~~n~l~~-----------~--~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~ 111 (168)
T 2ell_A 49 VNLEFLSLINVGLIS-----------V--SNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDIS 111 (168)
T ss_dssp GGCCEEEEESSCCCC-----------C--SSCCCCSSCCEEEEESCCCCSCCCH----HHHHCTTCCEEECBSSSCCSSG
T ss_pred CCCCEEeCcCCCCCC-----------h--hhhccCCCCCEEECcCCcCchHHHH----HHhhCCCCCEEeccCCccCcch
Confidence 4688999998 7765 2 5688899999999999999997776 7777999999999999999642
Q ss_pred c-ccccCCCCccEEeccCCcCCCCCCh---hhcCCCCCCCEEeccCCcCCCCC
Q 027045 171 L-PYLNTLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 171 p-~~l~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
+ ..+..+++|++|++++|++++ +|. ..+..+++|++|++++|.+...+
T Consensus 112 ~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 112 TLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp GGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred hHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 2 789999999999999999998 554 36899999999999999987764
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=124.02 Aligned_cols=116 Identities=23% Similarity=0.209 Sum_probs=95.0
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ .+.+ +.+..|.++++|++|++++|++++..|. .|..+++|++|++++|.++ .+
T Consensus 21 ~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~l 84 (520)
T 2z7x_B 21 QKTTILNISQNYISE-----------LWTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKLV-KI 84 (520)
T ss_dssp TTCSEEECCSSCCCC-----------CCHHHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTTCCEEECCSSCCC-EE
T ss_pred ccccEEECCCCcccc-----------cChhhccccccccEEecCCCccCCcChH----HhhcccCCCEEecCCCcee-ec
Confidence 5788899988 7765 4446788899999999999999998788 8999999999999999998 56
Q ss_pred cccccCCCCccEEeccCCcCCC-CCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
|.. .+++|++|++++|++++ .+|. .++++++|++|++++|.+++. .+..+.+|
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L 138 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKS-SVLPIAHL 138 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGG-GGGGGTTS
T ss_pred Ccc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccchh-hccccccc
Confidence 665 78999999999999987 4566 789999999999999998763 34434333
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.45 E-value=3.5e-13 Score=122.53 Aligned_cols=116 Identities=28% Similarity=0.251 Sum_probs=97.4
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ .+.+ +.+..|.++++|++|++++|++++..|. .|..+++|++|++++|.++ .+
T Consensus 52 ~~L~~L~Ls~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~l 115 (562)
T 3a79_B 52 PRTKALSLSQNSISE-----------LRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NI 115 (562)
T ss_dssp TTCCEEECCSSCCCC-----------CCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EE
T ss_pred CCcCEEECCCCCccc-----------cChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-cc
Confidence 5788999998 7765 5556789999999999999999998888 8999999999999999999 56
Q ss_pred cccccCCCCccEEeccCCcCCC-CCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEG-SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
|.. .+++|++|++++|++++ .+|. .|+++++|++|++++|++++. .+..+.+|
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L 169 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQL-DLLPVAHL 169 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCTT-TTGGGTTS
T ss_pred Ccc--ccccCCEEECCCCCccccCchH-hhcccCcccEEecCCCccccC-chhhhhhc
Confidence 765 89999999999999987 3345 799999999999999999874 34444333
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=3.5e-13 Score=119.91 Aligned_cols=122 Identities=24% Similarity=0.259 Sum_probs=76.8
Q ss_pred CcEEEEecCC-CccccccCCCCC-------------ccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCc
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGS-------------ALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK 157 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~-------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~ 157 (229)
.+++.|+|++ .+.+..|..... +..+....|.++++|++|++++|++++..|. .|..+++|+
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~ 131 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLK 131 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCC
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh----HccccccCC
Confidence 4577788877 665532222111 1122333456666677777777777666565 666677777
Q ss_pred EEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 158 MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 158 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+|++++|.+++..|..|..+++|+.|++++|++++ +|...+.++++|+.|++++|.+.+.
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEe
Confidence 77777777766666667777777777777777766 5544567777777777777776665
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=5.6e-13 Score=119.68 Aligned_cols=118 Identities=22% Similarity=0.146 Sum_probs=73.9
Q ss_pred CCCCceecCCCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccC-CCCCCcE
Q 027045 81 DWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKM 158 (229)
Q Consensus 81 ~w~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~l~~L~~ 158 (229)
.+.++.|.. -..++.|++++ .+.+ +.+..|..+++|++|++++|.+++..|. .+. .+++|++
T Consensus 110 ~l~~~~~~~-l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~ 173 (487)
T 3oja_A 110 NISRVSCSR-GQGKKNIYLANNKITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEH 173 (487)
T ss_dssp CCCCEEECC-CSSCEEEECCSSCCCS-----------GGGBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCE
T ss_pred cCCCCCccc-cCCCCEEECCCCCCCC-----------CCchhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccE
Confidence 344454532 23466666666 5554 2334456667777777777777776665 554 5677777
Q ss_pred EEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 159 LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 159 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
|++++|.+++. |. +..+++|++|+|++|.+++ +|. .+..+++|+.|++++|.++++
T Consensus 174 L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~l 229 (487)
T 3oja_A 174 LNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVLI 229 (487)
T ss_dssp EECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCEE
T ss_pred EecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCccc
Confidence 77777777643 22 3346677777777777776 555 466677777777777777664
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.42 E-value=4.8e-13 Score=121.08 Aligned_cols=122 Identities=24% Similarity=0.286 Sum_probs=102.3
Q ss_pred CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045 91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169 (229)
Q Consensus 91 ~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~ 169 (229)
...++.|++++ ++.+ +....|.++++|++|++++|++++..|. .|..+++|++|++++|.+++.
T Consensus 27 ~~~l~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CSSCCEEECCSCCCCE-----------ECTTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEE
T ss_pred cccccEEEccCCccCc-----------cChhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCcc
Confidence 34688999999 7765 5556788999999999999999997777 899999999999999999987
Q ss_pred CcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC---CCcccCCCCC
Q 027045 170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRLL 228 (229)
Q Consensus 170 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~ 228 (229)
.|..|+.+++|++|++++|++++ ++...++++++|++|++++|.+++. ..+..+.+|.
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 77889999999999999999998 6654689999999999999998873 3455555553
No 78
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=5e-13 Score=122.28 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=93.7
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
.++.|++++ ++.+ ++ . |..+++|+.|++++|+|+. +|. .|+.+++|+.|++++|.+++ +|
T Consensus 442 ~L~~L~Ls~n~l~~-----------lp-~-~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----------LC-H-LEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp TCSEEECTTSCCSS-----------CC-C-GGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG
T ss_pred CceEEEecCCCCCC-----------Cc-C-ccccccCcEeecCcccccc-cch----hhhcCCCCCEEECCCCCCCC-Cc
Confidence 367799998 7765 22 2 7889999999999999995 788 99999999999999999996 67
Q ss_pred ccccCCCCccEEeccCCcCCCCC-ChhhcCCCCCCCEEeccCCcCCCCC
Q 027045 172 PYLNTLTSLTTLILSDNSIEGSR-TKQGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 172 ~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
.++.+++|++|+|++|++++.. |. .++.+++|++|++++|++++.+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSS
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCc
Confidence 8999999999999999999943 76 8999999999999999999874
No 79
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=6e-13 Score=100.31 Aligned_cols=97 Identities=25% Similarity=0.238 Sum_probs=84.0
Q ss_pred CCCCCcEEeCCCCcCC-CccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045 124 PFEELQRLDLPGNWFT-GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (229)
Q Consensus 124 ~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 202 (229)
..++|+.|++++|.++ +.+|. .+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|. .+..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHC
T ss_pred CCccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhC
Confidence 3478999999999998 67887 889999999999999999965 7789999999999999999986776 77789
Q ss_pred CCCCEEeccCCcCCCC---CCcccCCCC
Q 027045 203 RYLQVLDLSGNFNITS---GSLTRLGRL 227 (229)
Q Consensus 203 ~~L~~L~L~~N~l~~~---~~~~~l~~L 227 (229)
++|++|++++|.+++. ..+..+.+|
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 9999999999999985 345555554
No 80
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=8.8e-13 Score=102.14 Aligned_cols=98 Identities=29% Similarity=0.361 Sum_probs=81.9
Q ss_pred CCCCceecC---------CCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc
Q 027045 81 DWEGVKCNA---------TTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF 150 (229)
Q Consensus 81 ~w~gv~C~~---------~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 150 (229)
.|..+.|.. ....++.|+|++ ++.+ +.+..|.++++|++|+|++|+|+++.+. .|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK-----------LEPGVFDRLTQLTRLDLDNNQLTVLPAG----VF 74 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCCCTT----TT
T ss_pred CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCc-----------cChhhhcCcccCCEEECCCCCcCccChh----hc
Confidence 566677753 123567788887 6665 5567789999999999999999997776 78
Q ss_pred CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCC
Q 027045 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS 193 (229)
Q Consensus 151 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 193 (229)
..+++|++|++++|++++..+..|..+++|++|+|++|.++..
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999999999999977777799999999999999999873
No 81
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=4.5e-13 Score=125.85 Aligned_cols=107 Identities=25% Similarity=0.286 Sum_probs=92.8
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
..++.|+|++ .+.. +... +..+++|++|+|++|.|+. +|. .|..+++|++|+|++|.|+ .+
T Consensus 224 ~~L~~L~Ls~n~l~~-----------l~~~-~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 224 QLWHALDLSNLQIFN-----------ISAN-IFKYDFLTRLYLNGNSLTE-LPA----EIKNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp CCCCEEECTTSCCSC-----------CCGG-GGGCCSCSCCBCTTSCCSC-CCG----GGGGGTTCCEEECTTSCCS-SC
T ss_pred CCCcEEECCCCCCCC-----------CChh-hcCCCCCCEEEeeCCcCcc-cCh----hhhCCCCCCEEeCcCCcCC-cc
Confidence 4577788888 6553 2222 3478999999999999994 787 8999999999999999999 78
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
|..|+.+++|++|+|++|.|+. +|. .|+++++|++|+|++|+|++.
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTT-LPW-EFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCC-CCS-STTSCTTCCCEECTTSCCCSH
T ss_pred ChhhcCCCCCCEEECCCCCCCc-cCh-hhhcCCCccEEeCCCCccCCC
Confidence 9999999999999999999986 998 699999999999999999875
No 82
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.39 E-value=7.7e-13 Score=120.89 Aligned_cols=111 Identities=22% Similarity=0.156 Sum_probs=87.2
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ .+.+ +.+..|.++++|++|++++|++++..|. .|..+++|++|++++|.+++..
T Consensus 57 ~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 57 INLTFLDLTRCQIYW-----------IHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TTCSEEECTTCCCCE-----------ECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTCCEEECTTSCCSCGG
T ss_pred ccceEEECCCCccce-----------eChhhccCccccCeeeCCCCcccccChh----hhcccccccEeeccccCcccCC
Confidence 4678888888 7765 5556778888888888888888887777 8888888888888888888666
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
|..++.+++|++|++++|++++ ++...+..+++|++|++++|.+++.
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred cchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCccccc
Confidence 7778888888888888888887 3211355588888888888888765
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=2.5e-12 Score=107.86 Aligned_cols=96 Identities=36% Similarity=0.393 Sum_probs=67.6
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+..+++|++|++++|++++. + .+..+++|+.|++++|.+++. ..+..+++|++|++++|++++ ++. +.
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~ 175 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LA 175 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GT
T ss_pred hhccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hc
Confidence 366677777777777777763 3 566777777777777777753 457777777888888777776 543 67
Q ss_pred CCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 201 NLRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
.+++|++|++++|.+++.+.+..+.+|
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~l~~l~~L 202 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRALAGLKNL 202 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred CCCccCEEECCCCcCCCChhhccCCCC
Confidence 777888888888877776555555544
No 84
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2.9e-12 Score=99.63 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=79.9
Q ss_pred CcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCE
Q 027045 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207 (229)
Q Consensus 128 L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~ 207 (229)
-+.+++++|+++. +|. .+. ++|++|++++|.+++..|..|..+++|++|+|++|+|++ +|...|.++++|++
T Consensus 14 ~~~l~~~~n~l~~-iP~----~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPA----GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSS-CCS----CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCc-cCC----CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhE
Confidence 3789999999987 565 553 899999999999998889999999999999999999998 77656789999999
Q ss_pred EeccCCcCCCCCC--cccCCCCC
Q 027045 208 LDLSGNFNITSGS--LTRLGRLL 228 (229)
Q Consensus 208 L~L~~N~l~~~~~--~~~l~~L~ 228 (229)
|+|++|+|++.+. +..+.+|.
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCS
T ss_pred EECCCCccceeCHHHhccccCCC
Confidence 9999999998842 55566553
No 85
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=4.8e-12 Score=108.49 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=98.8
Q ss_pred CCceecCCCCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEc
Q 027045 83 EGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNL 161 (229)
Q Consensus 83 ~gv~C~~~~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~L 161 (229)
....|.. ..+ .+.++ ++.. +| .. + .++|++|++++|++++..+. .|..+++|++|++
T Consensus 26 ~~~~C~~--~~~--c~~~~~~l~~-iP----------~~-~--~~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L 83 (353)
T 2z80_A 26 ASLSCDR--NGI--CKGSSGSLNS-IP----------SG-L--TEAVKSLDLSNNRITYISNS----DLQRCVNLQALVL 83 (353)
T ss_dssp -CCEECT--TSE--EECCSTTCSS-CC----------TT-C--CTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEC
T ss_pred cCCCCCC--CeE--eeCCCCCccc-cc----------cc-c--cccCcEEECCCCcCcccCHH----HhccCCCCCEEEC
Confidence 4567743 333 67777 6653 22 21 1 25899999999999997776 8999999999999
Q ss_pred CCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC---cccCCCCC
Q 027045 162 GDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS---LTRLGRLL 228 (229)
Q Consensus 162 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~ 228 (229)
++|.+++..|..+..+++|++|++++|++++ +|...+.++++|++|++++|++++.+. +..+.+|.
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 84 TSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 9999998888889999999999999999998 777569999999999999999998754 55555553
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=3e-12 Score=105.92 Aligned_cols=111 Identities=29% Similarity=0.355 Sum_probs=78.1
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ ++.+ +.. +..+++|++|++++|++++ +|. +.. ++|++|++++|.+++ +
T Consensus 63 ~~L~~L~L~~N~i~~-----------~~~--l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~ 121 (263)
T 1xeu_A 63 TNLKELHLSHNQISD-----------LSP--LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-T 121 (263)
T ss_dssp TTCCEEECCSSCCCC-----------CGG--GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-S
T ss_pred CCCCEEECCCCccCC-----------Chh--hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-C
Confidence 4678888888 6665 222 6777888888888888887 342 223 778888888888775 3
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
+ .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++...+..+.+|
T Consensus 122 ~-~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L 174 (263)
T 1xeu_A 122 D-SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNTGGLTRLKKV 174 (263)
T ss_dssp G-GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred h-hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence 3 47777888888888888876 54 477778888888888887776555555544
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=6.7e-12 Score=114.08 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=80.2
Q ss_pred CCcEEEEecCC-CccccccCCCCCcc---c----------cC--CcccCCCCCCcEEeCCCCcCCCccccccccccCCCC
Q 027045 91 TRRVMQLSLNE-TIKFNYSSGSGSAL---L----------LN--MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK 154 (229)
Q Consensus 91 ~~~v~~L~L~~-~l~~~~~~~~~~~~---~----------l~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~ 154 (229)
...++.|++++ .+.+.+|....... . +. +..|.++++|++|++++|++++.+|. ..+..++
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~l~ 428 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD---RTCAWAE 428 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS---CCCCCCT
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh---hhhcCcc
Confidence 34567777777 66654443322111 1 11 12366777777788887777774443 0466677
Q ss_pred CCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC--cccCCCC
Q 027045 155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS--LTRLGRL 227 (229)
Q Consensus 155 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L 227 (229)
+|++|++++|.+++.+|..+. ++|++|++++|+++. +|. .+.++++|++|++++|+++.++. +..+.+|
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCT-TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cCh-hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence 777777777777665555443 577777777777775 776 45577778888888887776643 4444444
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=4e-12 Score=106.63 Aligned_cols=113 Identities=31% Similarity=0.300 Sum_probs=95.0
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ ++.+ +.. +..+++|++|++++|++++ +| .+..+++|++|++++|.+++ +
T Consensus 68 ~~L~~L~L~~n~l~~-----------~~~--l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~i~~-~ 127 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTD-----------IKP--LANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISD-I 127 (291)
T ss_dssp TTCCEEECCSSCCCC-----------CGG--GTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCC-C
T ss_pred CCCCEEEccCCccCC-----------Ccc--cccCCCCCEEECCCCcCCC-Ch-----hhccCCCCCEEECCCCcCCC-C
Confidence 4688899988 7765 222 7889999999999999998 44 68999999999999999995 3
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL 228 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~ 228 (229)
+.+..+++|++|++++|++++ ++ .+..+++|++|++++|.+++...+..+.+|.
T Consensus 128 -~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~ 181 (291)
T 1h6t_A 128 -NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181 (291)
T ss_dssp -GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred -hhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCccccchhhcCCCccC
Confidence 568899999999999999998 53 6899999999999999999986566666553
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=4e-12 Score=107.40 Aligned_cols=96 Identities=27% Similarity=0.327 Sum_probs=63.6
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+..+++|++|++++|++++ ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|++++ ++. +.
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~--l~ 170 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITD-VT-----PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP--LA 170 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG--GT
T ss_pred hhcCCCCCCEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh--hc
Confidence 35566667777777777666 23 466677777777777777643 32 6677777777777777776 543 66
Q ss_pred CCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 201 NLRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
.+++|++|++++|.+++...+..+.+|
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~l~~l~~L 197 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISPLASLPNL 197 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred CCCCCCEEECCCCccCcChhhcCCCCC
Confidence 777777777777777776555544444
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=7e-12 Score=105.89 Aligned_cols=95 Identities=32% Similarity=0.389 Sum_probs=67.6
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
+..+++|++|++++|++++. + .+..+++|++|++++|.+++ ++. +..+++|+.|++++|++++ ++. +..
T Consensus 125 l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~ 193 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNI-S-----PLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP--LAS 193 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--GGG
T ss_pred hcCCCCCCEEECCCCccCcC-c-----cccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh--hcC
Confidence 66777788888888877763 3 36677778888888887774 333 7777778888888888776 543 677
Q ss_pred CCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 202 LRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 202 l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
+++|++|++++|++++...+..+.+|
T Consensus 194 l~~L~~L~L~~N~l~~~~~l~~l~~L 219 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDVSPLANTSNL 219 (308)
T ss_dssp CTTCCEEECTTSCCCBCGGGTTCTTC
T ss_pred CCCCCEEEccCCccCccccccCCCCC
Confidence 77788888888877776555545444
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=123.69 Aligned_cols=116 Identities=27% Similarity=0.308 Sum_probs=96.9
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
.++.|++++ .+.+ +.+..|..+++|+.|++++|++++..|. .|..+++|++|++++|.+++..|
T Consensus 267 ~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 267 SVRHLDLSHGFVFS-----------LNSRVFETLKDLKVLNLAYNKINKIADE----AFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp CCCEEECTTCCCCE-----------ECSCCSSSCCCCCEEEEESCCCCEECTT----TTTTCSSCCEEEEESCCCSCCCS
T ss_pred CccEEECCCCcccc-----------cChhhhhcCCCCCEEECCCCcCCCCChH----HhcCCCCCCEEECCCCCCCccCH
Confidence 567777777 5554 4556788899999999999999998887 89999999999999999998888
Q ss_pred ccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccC
Q 027045 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224 (229)
Q Consensus 172 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l 224 (229)
..+..+++|++|++++|++++ ++...|.++++|++|++++|.+++.+.++.|
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L 383 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCCSSCCSC
T ss_pred HHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcccCCCCc
Confidence 899999999999999999987 5554788999999999999999886554433
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.37 E-value=1.8e-12 Score=120.04 Aligned_cols=98 Identities=29% Similarity=0.273 Sum_probs=85.0
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
+....|.++++|++|++++|++++..|. .|..+++|++|++++|.+++..|..++.+++|++|++++|++++ ++.
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 162 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKS 162 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCH
T ss_pred cChhhhccCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCH
Confidence 4445688999999999999999997777 89999999999999999998888889999999999999999998 544
Q ss_pred hhcC--CCCCCCEEeccCCcCCCCC
Q 027045 197 QGLA--NLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 197 ~~~~--~l~~L~~L~L~~N~l~~~~ 219 (229)
..+. .+++|++|++++|.+++..
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBC
T ss_pred HHhhccccccccEEECCCCcccccC
Confidence 3544 5689999999999998863
No 93
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=3.4e-12 Score=108.36 Aligned_cols=87 Identities=29% Similarity=0.288 Sum_probs=66.4
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 205 (229)
++|++|++++|++++..|. .|..+++|++|++++|.+++..+..+..+++|++|++++|+++. +|. .+..+++|
T Consensus 192 ~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L 265 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG-GLADHKYI 265 (330)
T ss_dssp TTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT-TTTTCSSC
T ss_pred ccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CCh-hhccCCCc
Confidence 5677777777777776666 77777888888888888876666677777888888888888775 776 67777888
Q ss_pred CEEeccCCcCCCC
Q 027045 206 QVLDLSGNFNITS 218 (229)
Q Consensus 206 ~~L~L~~N~l~~~ 218 (229)
++|++++|++++.
T Consensus 266 ~~L~l~~N~i~~~ 278 (330)
T 1xku_A 266 QVVYLHNNNISAI 278 (330)
T ss_dssp CEEECCSSCCCCC
T ss_pred CEEECCCCcCCcc
Confidence 8888888887776
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.36 E-value=7.4e-12 Score=112.97 Aligned_cols=97 Identities=29% Similarity=0.261 Sum_probs=86.0
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 205 (229)
++|++|++++|++++..|. .|..+++|++|++++|.+++..|..|..+++|++|++++|++++ ++...|+++++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSS----TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChh----hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCC
Confidence 6899999999999998888 89999999999999999998888899999999999999999998 655479999999
Q ss_pred CEEeccCCcCCCCC---CcccCCCC
Q 027045 206 QVLDLSGNFNITSG---SLTRLGRL 227 (229)
Q Consensus 206 ~~L~L~~N~l~~~~---~~~~l~~L 227 (229)
++|++++|.+++.+ .+..+.+|
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred cEEECCCCcccccchhhhhhccCCc
Confidence 99999999998652 34445554
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=5.2e-12 Score=104.45 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=92.6
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|++++ ++.. + ..+..+++|++|++++|++++. + .+..+++|++|++++|++++ +
T Consensus 41 ~~L~~L~l~~n~i~~-----------l--~~l~~l~~L~~L~L~~N~i~~~-~-----~l~~l~~L~~L~L~~N~l~~-l 100 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-----------L--AGMQFFTNLKELHLSHNQISDL-S-----PLKDLTKLEELSVNRNRLKN-L 100 (263)
T ss_dssp TTCSEEECTTSCCCC-----------C--TTGGGCTTCCEEECCSSCCCCC-G-----GGTTCSSCCEEECCSSCCSC-C
T ss_pred CcCcEEECcCCCccc-----------c--hHHhhCCCCCEEECCCCccCCC-h-----hhccCCCCCEEECCCCccCC-c
Confidence 4578899988 6664 2 2577889999999999999984 4 47899999999999999995 4
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL 228 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~ 228 (229)
|. +.. ++|++|++++|++++ ++ .+.++++|++|++++|++++.+.+..+.+|.
T Consensus 101 ~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~ 153 (263)
T 1xeu_A 101 NG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLE 153 (263)
T ss_dssp TT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCC
T ss_pred Cc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCChHHccCCCCC
Confidence 54 333 899999999999998 65 5899999999999999999987666666653
No 96
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=116.66 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=94.1
Q ss_pred EEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccc
Q 027045 95 MQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY 173 (229)
Q Consensus 95 ~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 173 (229)
+.+++++ ++.. +| .. +. ++|++|++++|.+++..|. .|..+++|++|++++|++++..|..
T Consensus 3 ~~l~ls~n~l~~-ip----------~~-~~--~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~ 64 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VP----------KD-LS--QKTTILNISQNYISELWTS----DILSLSKLRILIISHNRIQYLDISV 64 (520)
T ss_dssp CEEECTTSCCSS-CC----------CS-CC--TTCSEEECCSSCCCCCCHH----HHTTCTTCCEEECCSSCCCEEEGGG
T ss_pred ceEecCCCCccc-cc----------cc-cc--ccccEEECCCCcccccChh----hccccccccEEecCCCccCCcChHH
Confidence 3578888 7764 33 22 22 7999999999999998877 8999999999999999999888999
Q ss_pred ccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCC---CCcccCCCCC
Q 027045 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITS---GSLTRLGRLL 228 (229)
Q Consensus 174 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~ 228 (229)
|+.+++|++|++++|++++ +|. . .+++|++|++++|.+++. ..+..+.+|.
T Consensus 65 ~~~l~~L~~L~Ls~N~l~~-lp~-~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNKLVK-ISC-H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp GTTCTTCCEEECCSSCCCE-EEC-C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred hhcccCCCEEecCCCceee-cCc-c--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 9999999999999999996 887 3 899999999999999874 3455566554
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=2e-12 Score=109.48 Aligned_cols=91 Identities=23% Similarity=0.100 Sum_probs=55.5
Q ss_pred cccCCCCCCcEEeCCCCcCCCcccccccccc-CCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
..+..+++|++|++++|.+++..+. .+ ..+++|++|++++|.+++. |. ...+++|++|++++|++++ +|. .
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~-~ 209 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGP-E 209 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECG-G
T ss_pred hhhhccCCCCEEECCCCCCCcccHH----HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chh-h
Confidence 3455566677777777776665554 44 3466666666666666633 22 2346666666666666665 555 4
Q ss_pred cCCCCCCCEEeccCCcCCCC
Q 027045 199 LANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..+++|++|++++|+++++
T Consensus 210 ~~~l~~L~~L~L~~N~l~~l 229 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVLI 229 (317)
T ss_dssp GGGGTTCSEEECTTSCCCEE
T ss_pred hcccCcccEEECcCCcccch
Confidence 66666666667666666654
No 98
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=7e-13 Score=102.96 Aligned_cols=106 Identities=22% Similarity=0.200 Sum_probs=90.9
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 171 (229)
.++.|++++ .+.+ + ..|..+++|++|++++|+|++..+. .|..+++|++|++++|.++ .+|
T Consensus 43 ~L~~L~Ls~N~l~~-----------~--~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~-~~~ 104 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-----------L--DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLV-ELG 104 (176)
T ss_dssp CCSEEECCSSCCCE-----------E--CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCC-CGG
T ss_pred CCCEEECCCCCCCc-----------c--cccccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCCcCC-cch
Confidence 689999999 7776 3 5688899999999999999986555 5689999999999999997 466
Q ss_pred c--cccCCCCccEEeccCCcCCCCCChh---hcCCCCCCCEEeccCCcCCC
Q 027045 172 P--YLNTLTSLTTLILSDNSIEGSRTKQ---GLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 172 ~--~l~~l~~L~~L~Ls~N~l~~~ip~~---~~~~l~~L~~L~L~~N~l~~ 217 (229)
. .+..+++|++|++++|.++. +|.. .+..+++|++||+++|.+..
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 5 78999999999999999986 7762 38899999999999997644
No 99
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=6.9e-13 Score=112.13 Aligned_cols=89 Identities=22% Similarity=0.157 Sum_probs=61.4
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC--Ccccc--cCCCCccEEeccCCcCCC--CCChhhc
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS--ILPYL--NTLTSLTTLILSDNSIEG--SRTKQGL 199 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~--~ip~~~~ 199 (229)
++|++|++++|++++..|. .|..+++|++|++++|++.+. .|..+ ..+++|++|++++|++++ .++...+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCEEEEESCSCCCCCTT----TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHH----HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 6777777777777776656 777777777777777776654 23333 677777788888777774 1333234
Q ss_pred CCCCCCCEEeccCCcCCCC
Q 027045 200 ANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~ 218 (229)
.++++|++|++++|++++.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp HTTCCCSEEECTTSCCCSS
T ss_pred hcCCCCCEEECCCCcCCcc
Confidence 5677888888888888774
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.34 E-value=5.6e-13 Score=112.68 Aligned_cols=99 Identities=20% Similarity=0.132 Sum_probs=75.0
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCc--ccccccccc--CCCCCCcEEEcCCCCCCC--CCc-ccccCCCCccEEeccCCc
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGI--YENRAYDSF--GSLKQLKMLNLGDNFFND--SIL-PYLNTLTSLTTLILSDNS 189 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~--~~l~~L~~L~Ls~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~ 189 (229)
+.+..|..+++|++|++++|++.+. .+. .+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|+
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 3446678889999999999998775 233 33 788999999999999883 122 334577899999999999
Q ss_pred CCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045 190 IEGSRTKQGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 190 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
+++..|...+..+++|++|++++|.++.++
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred CCcccchhhhhhcCCCCEEECCCCccChhh
Confidence 988554335667889999999999988653
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=6.7e-13 Score=107.76 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=58.8
Q ss_pred CcEEEEecCC-C-ccccccCCCCCccccCCcccCCCCCCcEEeCCC-CcCCCccccccccccCCCCCCcEEEcCCCCCCC
Q 027045 92 RRVMQLSLNE-T-IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND 168 (229)
Q Consensus 92 ~~v~~L~L~~-~-l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~ 168 (229)
.+++.|++++ + +.. +....|.++++|++|++++ |++++..+. .|..+++|++|++++|.+++
T Consensus 55 ~~L~~L~l~~n~~l~~-----------i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQ-----------LESHSFYNLSKVTHIEIRNTRNLTYIDPD----ALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp TTCCEEEEECCSSCCE-----------ECTTTEESCTTCCEEEEEEETTCCEECTT----SEECCTTCCEEEEEEECCCS
T ss_pred CCCcEEeCCCCCCcce-----------eCHhHcCCCcCCcEEECCCCCCeeEcCHH----HhCCCCCCCEEeCCCCCCcc
Confidence 4577888887 4 443 3344455566666666665 666654444 55555566666666655553
Q ss_pred CCcccccCCCCcc---EEeccCC-cCCCCCChhhcCCCCCCC-EEeccCCcCC
Q 027045 169 SILPYLNTLTSLT---TLILSDN-SIEGSRTKQGLANLRYLQ-VLDLSGNFNI 216 (229)
Q Consensus 169 ~~p~~l~~l~~L~---~L~Ls~N-~l~~~ip~~~~~~l~~L~-~L~L~~N~l~ 216 (229)
+|. +..+++|+ +|++++| ++++ +|...|.++++|+ +|++++|.++
T Consensus 120 -lp~-~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 120 -FPD-LTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp -CCC-CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCC
T ss_pred -ccc-cccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCc
Confidence 443 44444554 5555555 5544 4333455555555 5555555544
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=109.37 Aligned_cols=101 Identities=26% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCC---CCccEEeccCCcCCCCCChhhc
Q 027045 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTL---TSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..+++|++|++++|+++.. +......+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++. +|. .+
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~-~~ 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPK-GL 270 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCS-CC
T ss_pred hcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhh-hh
Confidence 4566666666666666542 21000014567888888888888887777777666 588888888888885 776 44
Q ss_pred CCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045 200 ANLRYLQVLDLSGNFNITSGSLTRLGRLL 228 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~~~~~~l~~L~ 228 (229)
. ++|++|++++|++++++.+..+.+|.
T Consensus 271 ~--~~L~~L~Ls~N~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNRAPQPDELPEVD 297 (310)
T ss_dssp C--SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred c--CCCCEEECCCCcCCCCchhhhCCCcc
Confidence 3 78888899888888875555555543
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=9.7e-12 Score=114.54 Aligned_cols=96 Identities=36% Similarity=0.393 Sum_probs=62.6
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+..+++|+.|+|++|+++++ + .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++ ++. +.
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~--l~ 172 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LA 172 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG--GT
T ss_pred hhccCCCCCEEEecCCCCCCC-c-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh--hc
Confidence 456667777777777777763 3 466667777777777777643 456667777777777777766 432 66
Q ss_pred CCCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 201 NLRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
.+++|+.|+|++|+|++.+.+..+.+|
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L 199 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLRALAGLKNL 199 (605)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCC
Confidence 677777777777777666555444444
No 104
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.32 E-value=1.1e-12 Score=121.45 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=88.2
Q ss_pred CcccC--CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCC-CCC-CCcccccCC------CCccEEeccCC
Q 027045 119 MSLFH--PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FND-SILPYLNTL------TSLTTLILSDN 188 (229)
Q Consensus 119 ~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~Ls~N 188 (229)
+..+. ++++|++|++++|++.+.+|. .|..+++|++|++++|. +++ .+|..++.+ ++|++|++++|
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 44566 899999999999999999998 99999999999999998 998 899888876 99999999999
Q ss_pred cCCCCCCh-hhcCCCCCCCEEeccCCcCC-CCCCcccC
Q 027045 189 SIEGSRTK-QGLANLRYLQVLDLSGNFNI-TSGSLTRL 224 (229)
Q Consensus 189 ~l~~~ip~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~l 224 (229)
+++. +|. ..++++++|++|++++|+++ .++.+..+
T Consensus 316 ~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 316 NLKT-FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp CCSS-CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred cCCc-cCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 9995 885 36999999999999999998 43434333
No 105
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.32 E-value=4.4e-12 Score=107.84 Aligned_cols=92 Identities=23% Similarity=0.223 Sum_probs=65.4
Q ss_pred CcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhh
Q 027045 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (229)
Q Consensus 119 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 198 (229)
+..|..+++|++|++++|++++..+. .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++...
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~-~~~~~ 283 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVND 283 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTT----GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB-CCTTS
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChh----HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc-cChhH
Confidence 34566777777777777777776666 6777777777777777777 567777777777777777777776 54434
Q ss_pred cCC------CCCCCEEeccCCcCC
Q 027045 199 LAN------LRYLQVLDLSGNFNI 216 (229)
Q Consensus 199 ~~~------l~~L~~L~L~~N~l~ 216 (229)
|.. ..+|+.|++++|++.
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccccccccccccccceEeecCccc
Confidence 443 356777777777776
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=8.2e-12 Score=106.42 Aligned_cols=98 Identities=29% Similarity=0.411 Sum_probs=81.9
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
+..+++|++|++++|.+++. + .+..+++|++|++++|.+++. +.+..+++|+.|++++|++++..|. .+.+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~ 309 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI-N-----AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGG 309 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHT
T ss_pred hhcCCCCCEEECCCCccCCC-h-----hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-Hhhc
Confidence 77888999999999999884 3 688899999999999999853 4588899999999999999884444 7889
Q ss_pred CCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045 202 LRYLQVLDLSGNFNITSGSLTRLGRLL 228 (229)
Q Consensus 202 l~~L~~L~L~~N~l~~~~~~~~l~~L~ 228 (229)
+++|++|++++|++++...+..+.+|.
T Consensus 310 l~~L~~L~L~~n~l~~~~~~~~l~~L~ 336 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRPLASLSKMD 336 (347)
T ss_dssp CTTCSEEECCSSSCCCCGGGGGCTTCS
T ss_pred cccCCEEEccCCccccccChhhhhccc
Confidence 999999999999999886666666553
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=3.8e-12 Score=114.27 Aligned_cols=98 Identities=20% Similarity=0.132 Sum_probs=82.5
Q ss_pred CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCccccc-CCCCccEEeccCCcCCCCCChhhcCC
Q 027045 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN-TLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
..+++|+.|++++|.+++..|. .|..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++ +|. +..
T Consensus 117 ~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~--~~~ 189 (487)
T 3oja_A 117 SRGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVV 189 (487)
T ss_dssp CCCSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCC
T ss_pred cccCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc--ccc
Confidence 3468899999999999998887 889999999999999999988888776 78999999999999998 554 457
Q ss_pred CCCCCEEeccCCcCCCCC-CcccCCCC
Q 027045 202 LRYLQVLDLSGNFNITSG-SLTRLGRL 227 (229)
Q Consensus 202 l~~L~~L~L~~N~l~~~~-~~~~l~~L 227 (229)
+++|++|++++|.+++.+ .+..+.+|
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~~~~l~~L 216 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (487)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred CCCCCEEECCCCCCCCCCHhHcCCCCc
Confidence 999999999999999873 34444444
No 108
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=1.4e-12 Score=124.51 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=46.5
Q ss_pred ccCCCCCCcEEeCCCCc-CCC-ccccccccccCCC-------CCCcEEEcCCCCCCCCCcc--cccCCCCccEEeccCCc
Q 027045 121 LFHPFEELQRLDLPGNW-FTG-IYENRAYDSFGSL-------KQLKMLNLGDNFFNDSILP--YLNTLTSLTTLILSDNS 189 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~ 189 (229)
.|.++++|++|++++|+ +++ .+|. .+..+ ++|++|++++|.++ .+|. .++.+++|+.|+|++|+
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~----~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKA----DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHH----HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred HHhCCCCCCEEECcCCCCcccccchH----HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence 34445555555555554 554 4443 33222 25555555555555 4554 55555555555555555
Q ss_pred CCCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 190 IEGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 190 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
++ .+| .++++++|++|++++|+++.+
T Consensus 585 l~-~lp--~~~~L~~L~~L~Ls~N~l~~l 610 (876)
T 4ecn_A 585 VR-HLE--AFGTNVKLTDLKLDYNQIEEI 610 (876)
T ss_dssp CC-BCC--CCCTTSEESEEECCSSCCSCC
T ss_pred cc-cch--hhcCCCcceEEECcCCccccc
Confidence 55 355 355555555555555555533
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=109.50 Aligned_cols=121 Identities=18% Similarity=0.120 Sum_probs=86.9
Q ss_pred cEEEEecCC-CccccccCCC--CCc---cccCC--------------cccCCCCCCcEEeCCCCcCCCccccccccccCC
Q 027045 93 RVMQLSLNE-TIKFNYSSGS--GSA---LLLNM--------------SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGS 152 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~--~~~---~~l~~--------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 152 (229)
++++|++++ .+.+..|... ... ..++. ..+..+++|++|++++|++++..+. .|..
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~ 167 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE----QVRA 167 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT----SCCC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH----Hhcc
Confidence 378888888 7777666543 111 11110 1223578899999999999887777 8888
Q ss_pred CCCCcEEEcCCCCCCCC--Cc--ccccCCCCccEEeccCCcCCCCCChh---hcCCCCCCCEEeccCCcCCCC
Q 027045 153 LKQLKMLNLGDNFFNDS--IL--PYLNTLTSLTTLILSDNSIEGSRTKQ---GLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 153 l~~L~~L~Ls~N~l~~~--~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+++|++|++++|++.+. ++ ..++.+++|++|++++|+++. ++.. .+.++++|++|++++|.+++.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 99999999999987642 22 234678889999999999875 4431 256789999999999999886
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.26 E-value=1.4e-11 Score=104.24 Aligned_cols=85 Identities=24% Similarity=0.250 Sum_probs=76.0
Q ss_pred CCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCC
Q 027045 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 202 (229)
..+++|++|++++|.+++. + ....+++|++|++++|.+++ +|..+..+++|++|++++|++++ +|. .+..+
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~-~~~~l 236 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK-ALRFS 236 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT-TCCCC
T ss_pred hccCcCCEEECCCCcCccc-c-----cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhh-HhhcC
Confidence 4689999999999999986 4 34469999999999999995 55569999999999999999997 887 79999
Q ss_pred CCCCEEeccCCcCC
Q 027045 203 RYLQVLDLSGNFNI 216 (229)
Q Consensus 203 ~~L~~L~L~~N~l~ 216 (229)
++|++|++++|++.
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 99999999999998
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.26 E-value=2.8e-11 Score=111.43 Aligned_cols=113 Identities=31% Similarity=0.304 Sum_probs=95.6
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
.+++.|+|++ .+.+ +.+ +..+++|+.|+|++|++++ +| .+..+++|+.|+|++|.+++ +
T Consensus 65 ~~L~~L~Ls~N~l~~-----------~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~-l 124 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTD-----------IKP--LTNLKNLGWLFLDENKIKD-LS-----SLKDLKKLKSLSLEHNGISD-I 124 (605)
T ss_dssp TTCCEEECTTSCCCC-----------CGG--GGGCTTCCEEECCSSCCCC-CT-----TSTTCTTCCEEECTTSCCCC-C
T ss_pred CCCCEEEeeCCCCCC-----------Chh--hccCCCCCEEECcCCCCCC-Ch-----hhccCCCCCEEEecCCCCCC-C
Confidence 4688999998 7766 222 7889999999999999998 34 68999999999999999995 3
Q ss_pred cccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGRLL 228 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~ 228 (229)
+.+..+++|+.|+|++|++++ ++ .+..+++|+.|+|++|.+++...+..+.+|.
T Consensus 125 -~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~ 178 (605)
T 1m9s_A 125 -NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 178 (605)
T ss_dssp -GGGGGCTTCSEEECCSSCCCC-CG--GGGSCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred -ccccCCCccCEEECCCCccCC-ch--hhcccCCCCEEECcCCcCCCchhhccCCCCC
Confidence 458999999999999999998 53 6899999999999999999885566565553
No 112
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.24 E-value=2.5e-11 Score=103.37 Aligned_cols=88 Identities=27% Similarity=0.359 Sum_probs=77.7
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..+..+++|++|++++|++++. + .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++. +
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~--~ 329 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP--L 329 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG--G
T ss_pred hhHhcCCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC--h
Confidence 4578899999999999999985 4 68899999999999999998888899999999999999999998 554 7
Q ss_pred CCCCCCCEEeccCCcCC
Q 027045 200 ANLRYLQVLDLSGNFNI 216 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~ 216 (229)
..+++|++|++++|.++
T Consensus 330 ~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEESSSCC---
T ss_pred hhhhccceeehhhhccc
Confidence 88999999999999986
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=8.5e-11 Score=104.66 Aligned_cols=79 Identities=22% Similarity=0.177 Sum_probs=47.8
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
+..+++|++|++++|++++. .++.+++|++|++++|.+++ +| ++.+++|++|++++|++++ ++ +++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~ 146 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSH 146 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTT
T ss_pred cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---ccc
Confidence 45556666666666666653 24556666666666666664 33 5666666666666666665 32 456
Q ss_pred CCCCCEEeccCCc
Q 027045 202 LRYLQVLDLSGNF 214 (229)
Q Consensus 202 l~~L~~L~L~~N~ 214 (229)
+++|++|++++|.
T Consensus 147 l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 147 NTQLTELDCHLNK 159 (457)
T ss_dssp CTTCCEEECTTCS
T ss_pred CCcCCEEECCCCC
Confidence 6666666666663
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=8.7e-11 Score=104.39 Aligned_cols=95 Identities=27% Similarity=0.324 Sum_probs=58.4
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
+..+++|++|++++|++++. + .+..+++|++|++++|.+++..| +..+++|+.|++++|++++ ++ .+.+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~ 351 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDI-S-----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLAN 351 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCC-G-----GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTT
T ss_pred ccCCCccCeEEcCCCcccCc-h-----hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhcc
Confidence 55566666666666666663 2 34566667777777776665443 5566666677776666666 43 4666
Q ss_pred CCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 202 LRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 202 l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
+++|++|++++|++++...+..+.+|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~l~~L 377 (466)
T 1o6v_A 352 LTNINWLSAGHNQISDLTPLANLTRI 377 (466)
T ss_dssp CTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred CCCCCEEeCCCCccCccchhhcCCCC
Confidence 66777777777766665444444433
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=5.4e-11 Score=105.73 Aligned_cols=79 Identities=30% Similarity=0.391 Sum_probs=38.9
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
+..+++|++|++++|++++. + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+.+
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~ 154 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADI-T-----PLANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS--ALSG 154 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG--GGTT
T ss_pred hhccccCCEEECCCCccccC-h-----hhcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch--hhcc
Confidence 44455555555555555542 1 244455555555555555532 22 4555555555555555554 33 2455
Q ss_pred CCCCCEEecc
Q 027045 202 LRYLQVLDLS 211 (229)
Q Consensus 202 l~~L~~L~L~ 211 (229)
+++|++|+++
T Consensus 155 l~~L~~L~l~ 164 (466)
T 1o6v_A 155 LTSLQQLSFG 164 (466)
T ss_dssp CTTCSEEEEE
T ss_pred CCcccEeecC
Confidence 5555555553
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=5.2e-11 Score=108.86 Aligned_cols=92 Identities=32% Similarity=0.338 Sum_probs=81.6
Q ss_pred CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (229)
Q Consensus 127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 206 (229)
.|+.|++++|+|++ +| .|..+++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .++++++|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp-----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LC-----HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSS-CC-----CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred CceEEEecCCCCCC-Cc-----CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence 58899999999999 56 5889999999999999999 789999999999999999999998 87 599999999
Q ss_pred EEeccCCcCCCCC---CcccCCCCC
Q 027045 207 VLDLSGNFNITSG---SLTRLGRLL 228 (229)
Q Consensus 207 ~L~L~~N~l~~~~---~~~~l~~L~ 228 (229)
+|+|++|++++.. .+..+.+|.
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCC
Confidence 9999999999873 455555553
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=2.7e-11 Score=103.90 Aligned_cols=99 Identities=19% Similarity=0.316 Sum_probs=69.3
Q ss_pred CCCCCCceecCC---------CCcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccc
Q 027045 79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD 148 (229)
Q Consensus 79 C~~w~gv~C~~~---------~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 148 (229)
| ++..|.|.+. ...+++|+|++ ++.. +....|.++++|++|+|++|++.+.+|. .
T Consensus 9 C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----------i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---~ 73 (350)
T 4ay9_X 9 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----------IQKGAFSGFGDLEKIEISQNDVLEVIEA---D 73 (350)
T ss_dssp E-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----------ECTTSSTTCTTCCEEEEECCTTCCEECT---T
T ss_pred e-eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----------cCHHHHcCCCCCCEEECcCCCCCCccCh---h
Confidence 5 6788888641 13567777777 6654 5566788888888888888888765553 1
Q ss_pred ccCCCCCCcE-EEcCCCCCCCCCcccccCCCCccEEeccCCcCCC
Q 027045 149 SFGSLKQLKM-LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG 192 (229)
Q Consensus 149 ~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 192 (229)
.|.+++++++ +.++.|+++...|..|..+++|++|++++|++++
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 5667766654 4556677776666777777777777777777765
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.17 E-value=4.8e-11 Score=109.17 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=82.8
Q ss_pred CCCCC----CCCCc-eecCCCCcEEEEecCC-CccccccCCCCC-ccccCC--ccc----CCCCCCcEEeCCCCcCCCcc
Q 027045 76 SDCCD----DWEGV-KCNATTRRVMQLSLNE-TIKFNYSSGSGS-ALLLNM--SLF----HPFEELQRLDLPGNWFTGIY 142 (229)
Q Consensus 76 ~~~C~----~w~gv-~C~~~~~~v~~L~L~~-~l~~~~~~~~~~-~~~l~~--~~~----~~l~~L~~L~Ls~N~l~~~~ 142 (229)
.++|. .|.|+ .|. ..+++.|++++ ++.+ +|..... +..++. ..+ ..+++|++|++++|+|++ +
T Consensus 40 ~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-i 115 (571)
T 3cvr_A 40 ALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-L 115 (571)
T ss_dssp CCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-C
T ss_pred CCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-c
Confidence 45562 38888 675 35789999999 8776 6553321 111110 000 335677888888888777 5
Q ss_pred ccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCCC
Q 027045 143 ENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGS 220 (229)
Q Consensus 143 p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~~ 220 (229)
|. +.. +|++|++++|.+++ +|. .+++|++|++++|++++ +|. .+++|++|++++|++++++.
T Consensus 116 p~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 116 PE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp CC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCCCC
T ss_pred ch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCCcch
Confidence 52 322 78888888888875 555 56788888888888887 764 46778888888888877654
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.12 E-value=5.6e-10 Score=99.35 Aligned_cols=92 Identities=23% Similarity=0.140 Sum_probs=68.8
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCC
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 201 (229)
+..+++|++|++++|++++. .+..+++|++|++++|.+++ ++ ++.+++|++|++++|+..+.+ .+..
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-------~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~---~~~~ 168 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-------DVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL---DVTP 168 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-------CCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC---CCTT
T ss_pred cCCCCcCCEEECCCCcCCee-------cCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc---cccc
Confidence 67788888888888888873 36778888888888888886 33 778888888888888655545 3677
Q ss_pred CCCCCEEeccCCcCCCCCCcccCCCC
Q 027045 202 LRYLQVLDLSGNFNITSGSLTRLGRL 227 (229)
Q Consensus 202 l~~L~~L~L~~N~l~~~~~~~~l~~L 227 (229)
+++|++|++++|++++.+ +..+.+|
T Consensus 169 l~~L~~L~ls~n~l~~l~-l~~l~~L 193 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD-VSQNKLL 193 (457)
T ss_dssp CTTCCEEECCSSCCCCCC-CTTCTTC
T ss_pred CCcCCEEECCCCccceec-cccCCCC
Confidence 888888888888888764 4444433
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=1.9e-13 Score=108.17 Aligned_cols=106 Identities=25% Similarity=0.270 Sum_probs=80.7
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 170 (229)
..++.|++++ .+.+ +. .+.++++|++|++++|+++. +|. .+..+++|++|++++|.+++ +
T Consensus 48 ~~L~~L~ls~n~l~~-----------l~--~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l~~-l 108 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-----------IS--SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-L 108 (198)
T ss_dssp TTCSEEECSEEEESC-----------CC--CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEECCC-H
T ss_pred CCCCEEECCCCCCcc-----------cc--ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcCCc-C
Confidence 3577788877 6654 22 56677888888888888886 565 66677888888888888885 4
Q ss_pred cccccCCCCccEEeccCCcCCCCCCh-hhcCCCCCCCEEeccCCcCCCC
Q 027045 171 LPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 171 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
| .+..+++|++|++++|++++ ++. ..+..+++|++|++++|.+++.
T Consensus 109 ~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp H-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred C-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccc
Confidence 4 57788888888888888886 443 3578888899999988887664
No 121
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.7e-10 Score=98.39 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=73.9
Q ss_pred cEEeCCCC-cCCCccccccccccCCCCCCcEEEcCC-CCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCC
Q 027045 129 QRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (229)
Q Consensus 129 ~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 206 (229)
..++.+++ ++++ +| .+..+++|++|+|++ |.+++..+..|..+++|++|+|++|+|++ ++...|.++++|+
T Consensus 11 ~~v~~~~~n~l~~-ip-----~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LH-----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT-TT-----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCCc-cC-----CCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCC
Confidence 35688888 8888 66 477889999999996 99998888899999999999999999999 5544899999999
Q ss_pred EEeccCCcCCCCC
Q 027045 207 VLDLSGNFNITSG 219 (229)
Q Consensus 207 ~L~L~~N~l~~~~ 219 (229)
+|+|++|+|++.+
T Consensus 84 ~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 84 RLNLSFNALESLS 96 (347)
T ss_dssp EEECCSSCCSCCC
T ss_pred EEeCCCCccceeC
Confidence 9999999999874
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.09 E-value=9.1e-10 Score=97.92 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=42.5
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCC---------
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG--------- 192 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--------- 192 (229)
|.++++|++|++++|++++ +|. .+ ++|++|++++|.+++ +| .++.+++|++|++++|++++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~----~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPD----LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCC----CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred cCCCCCCCEEECCCCcCcc-cCC----Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCccc
Confidence 5566666666666666665 333 21 244455555554443 33 24444444444444444443
Q ss_pred ----------CCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 193 ----------SRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 193 ----------~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.+|. ++.+++|++|++++|++++.
T Consensus 219 ~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 219 SIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp EEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSC
T ss_pred EEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcc
Confidence 1432 44555555555555555544
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.04 E-value=1.8e-09 Score=95.98 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=83.2
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCC-----cccCCC-CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNM-----SLFHPF-EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN 164 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~-----~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N 164 (229)
.+++.|++++ .+.+ +|.....+..++. ..+..+ ++|++|++++|++++ +| .|..+++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECCCC
Confidence 4567777777 6655 4443222222211 112223 689999999999998 66 5889999999999999
Q ss_pred CCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCCCC
Q 027045 165 FFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 165 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 219 (229)
++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|.+++.+
T Consensus 164 ~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 164 SLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp CCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred cCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCC
Confidence 9985 66543 589999999999998 77 4888999999999998888754
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.04 E-value=4.4e-10 Score=96.36 Aligned_cols=91 Identities=18% Similarity=0.129 Sum_probs=77.4
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCc-ccccCCCCccE-EeccCCcCCCCCChhhcCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTT-LILSDNSIEGSRTKQGLANLR 203 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~Ls~N~l~~~ip~~~~~~l~ 203 (229)
+++++|+|++|+|+.+.+. .|.++++|++|+|++|.+.+.+| ..|.++++++. +.++.|++++ ++...|..++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 5799999999999996666 79999999999999999876665 46788988765 6677899998 6555899999
Q ss_pred CCCEEeccCCcCCCCCCc
Q 027045 204 YLQVLDLSGNFNITSGSL 221 (229)
Q Consensus 204 ~L~~L~L~~N~l~~~~~~ 221 (229)
+|++|++++|.++..+..
T Consensus 105 ~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp TCCEEEEEEECCSSCCCC
T ss_pred ccccccccccccccCCch
Confidence 999999999999887543
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.02 E-value=1.7e-11 Score=103.90 Aligned_cols=91 Identities=20% Similarity=0.113 Sum_probs=79.2
Q ss_pred cCCCCCCcEEeCCCCcCCCc-cccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCC-cCCCC-CChhh
Q 027045 122 FHPFEELQRLDLPGNWFTGI-YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN-SIEGS-RTKQG 198 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-ip~~~ 198 (229)
+..+++|++|++++|.+++. ++. .+..+++|++|++++|.+++..|..++.+++|++|++++| .+++. ++. .
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~ 163 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-L 163 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-H
T ss_pred hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-H
Confidence 45689999999999999876 666 7889999999999999999888888999999999999999 67742 554 6
Q ss_pred cCCCCCCCEEeccCC-cCCC
Q 027045 199 LANLRYLQVLDLSGN-FNIT 217 (229)
Q Consensus 199 ~~~l~~L~~L~L~~N-~l~~ 217 (229)
+.++++|++|++++| .+++
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCH
T ss_pred HhcCCCCCEEcCCCCCCcCh
Confidence 888999999999999 8875
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.00 E-value=9.5e-11 Score=99.25 Aligned_cols=89 Identities=24% Similarity=0.263 Sum_probs=76.2
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCC-CCCCC-CcccccCCCCccEEeccCC-cCCCC-CCh
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDS-ILPYLNTLTSLTTLILSDN-SIEGS-RTK 196 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-ip~ 196 (229)
.+..+++|++|++++|.+++..+. .+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 467889999999999999987787 8899999999999999 67753 6666888999999999999 88853 454
Q ss_pred hhcCCCC-CCCEEeccCCc
Q 027045 197 QGLANLR-YLQVLDLSGNF 214 (229)
Q Consensus 197 ~~~~~l~-~L~~L~L~~N~ 214 (229)
.+..++ +|++|++++|.
T Consensus 189 -~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 189 -AVAHVSETITQLNLSGYR 206 (336)
T ss_dssp -HHHHSCTTCCEEECCSCG
T ss_pred -HHHhcccCCCEEEeCCCc
Confidence 688899 99999999994
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=2.6e-12 Score=101.61 Aligned_cols=89 Identities=26% Similarity=0.346 Sum_probs=75.8
Q ss_pred ccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 200 (229)
.+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-----~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-----CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-----ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccc
Confidence 57788899999999999988 55 5778889999999999998 677777777899999999999988 66 478
Q ss_pred CCCCCCEEeccCCcCCCCC
Q 027045 201 NLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 201 ~l~~L~~L~L~~N~l~~~~ 219 (229)
++++|++|++++|++++.+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWG 131 (198)
T ss_dssp HHHHSSEEEESEEECCCHH
T ss_pred cCCCCCEEECCCCcCCchh
Confidence 8899999999999998764
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.97 E-value=1.6e-09 Score=99.05 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCCcEEEcCCCCCCCCCcccccCCCCc-------cEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcCCC
Q 027045 154 KQLKMLNLGDNFFNDSILPYLNTLTSL-------TTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 154 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~ 217 (229)
++|++|++++|.|+ .+|. +.. +| +.|+|++|+|+. +|. .+.++++|++|++++|++++
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~-~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPE-NILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCG-GGGGSCTTEEEECCSSSCCH
T ss_pred CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCH-HHhcCCCCCEEEeeCCcCCC
Confidence 44555555555555 3444 332 44 555555555554 554 44445666666666665554
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.97 E-value=7.4e-11 Score=102.24 Aligned_cols=94 Identities=27% Similarity=0.268 Sum_probs=72.9
Q ss_pred ccCCCCCCcEEeCCCCcCC----CccccccccccCCCCCCcEEEcCCCCCCCC----Ccccc--cCCCCccEEeccCCcC
Q 027045 121 LFHPFEELQRLDLPGNWFT----GIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYL--NTLTSLTTLILSDNSI 190 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l 190 (229)
.+..+++|++|++++|.++ +.+|. .+..+++|++|++++|.+++. +|..+ +.+++|++|+|++|.+
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 5667888888888888886 55666 778888889999998888764 45555 3378889999999988
Q ss_pred CC----CCChhhc-CCCCCCCEEeccCCcCCCCC
Q 027045 191 EG----SRTKQGL-ANLRYLQVLDLSGNFNITSG 219 (229)
Q Consensus 191 ~~----~ip~~~~-~~l~~L~~L~L~~N~l~~~~ 219 (229)
++ .+|. .+ .++++|++|++++|++++.+
T Consensus 287 ~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 287 ELDAVRTLKT-VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp BHHHHHHHHH-HHHHHCTTCCEEECTTSBSCTTS
T ss_pred CHHHHHHHHH-HHHhcCCCceEEEccCCcCCcch
Confidence 86 3666 44 66888999999999888764
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.95 E-value=2.9e-10 Score=104.96 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcee------cCCCCcEEEEecCC-CccccccCCCCC-ccccCC--ccc----CCCCCCc
Q 027045 64 LPSWVGEDDGMSSDCCDDWEGVKC------NATTRRVMQLSLNE-TIKFNYSSGSGS-ALLLNM--SLF----HPFEELQ 129 (229)
Q Consensus 64 ~~~W~~~~~~~~~~~C~~w~gv~C------~~~~~~v~~L~L~~-~l~~~~~~~~~~-~~~l~~--~~~----~~l~~L~ 129 (229)
...|.. ..++| .|.|..| ......++.|++++ ++. .+|..... +..++. ..+ ..+++|+
T Consensus 12 w~~W~~-----~~~~~-~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~ 84 (622)
T 3g06_A 12 WSAWRR-----AAPAE-ESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELR 84 (622)
T ss_dssp HHHHHH-----TCCGG-GHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCCTTCSEEEECSCCCSCCCCCCTTCC
T ss_pred HHHHHh-----cCCcc-hhccccccCcccccccCCCCcEEEecCCCcC-ccChhhCCCCcEEEecCCCCCCCCCcCCCCC
Confidence 344655 46788 8865321 11223578888888 666 45543321 111110 001 1456788
Q ss_pred EEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEe
Q 027045 130 RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLD 209 (229)
Q Consensus 130 ~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 209 (229)
+|++++|+|++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|. .+++|++|+
T Consensus 85 ~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~----~l~~L~~L~ 147 (622)
T 3g06_A 85 TLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV----LPPGLQELS 147 (622)
T ss_dssp EEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEE
T ss_pred EEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC----CCCCCCEEE
Confidence 88888888876 442 46788888888888884 444 55778888888888887 775 247888999
Q ss_pred ccCCcCCCCC
Q 027045 210 LSGNFNITSG 219 (229)
Q Consensus 210 L~~N~l~~~~ 219 (229)
+++|++++.+
T Consensus 148 Ls~N~l~~l~ 157 (622)
T 3g06_A 148 VSDNQLASLP 157 (622)
T ss_dssp CCSSCCSCCC
T ss_pred CcCCcCCCcC
Confidence 9999888764
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.94 E-value=1.1e-10 Score=100.44 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=51.9
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCC-CCCcEEEcCCCCCCCCCcccc----cC-CCCccEEeccCCcCCCC----CC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNFFNDSILPYL----NT-LTSLTTLILSDNSIEGS----RT 195 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~~~----ip 195 (229)
++|++|++++|++++..+......+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|++++. ++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 6677777777776654443000113333 667777777777765544433 22 24677777777777642 22
Q ss_pred hhhcCCCC-CCCEEeccCCcCCCC
Q 027045 196 KQGLANLR-YLQVLDLSGNFNITS 218 (229)
Q Consensus 196 ~~~~~~l~-~L~~L~L~~N~l~~~ 218 (229)
. .+..++ +|++|++++|++++.
T Consensus 160 ~-~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 160 Q-ILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp H-HHHTSCTTCCEEECTTSCGGGS
T ss_pred H-HHhcCCccccEeeecCCCCchh
Confidence 2 234444 677777777777654
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.88 E-value=1.1e-08 Score=94.56 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=59.1
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhcCCCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 205 (229)
++|++|++++|+|++ +|. .+++|++|++++|.++ .+|. .+++|+.|+|++|+++. +|. .+.++++|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~-lp~-~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR-LPE-SLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS-CCG-GGGGSCTT
T ss_pred CCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc-CCH-HHhhcccc
Confidence 567777777777776 332 3467888888888887 4555 56788888888888885 786 68888888
Q ss_pred CEEeccCCcCCCC
Q 027045 206 QVLDLSGNFNITS 218 (229)
Q Consensus 206 ~~L~L~~N~l~~~ 218 (229)
+.|++++|++++.
T Consensus 287 ~~L~L~~N~l~~~ 299 (622)
T 3g06_A 287 TTVNLEGNPLSER 299 (622)
T ss_dssp CEEECCSCCCCHH
T ss_pred CEEEecCCCCCCc
Confidence 8888888887754
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.85 E-value=5.3e-11 Score=98.84 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=36.8
Q ss_pred CCCCCCcEEEcCCCCCCC--CCcccccCCCCccEEeccCCcCCCCCChhhcCCCC--CCCEEeccCCcCCC
Q 027045 151 GSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR--YLQVLDLSGNFNIT 217 (229)
Q Consensus 151 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~--~L~~L~L~~N~l~~ 217 (229)
..+++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++ +. .+..+. +|++|+|++|.+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER--ELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG--GGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch--hhhhcccCCcceEEccCCcCcc
Confidence 345666666666666665 233445566666666666666665 31 233333 66666666666654
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.85 E-value=4.6e-10 Score=96.57 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=87.4
Q ss_pred CCcEEEEecCC-CccccccCCCCCccccCC----cccCCCC-CCcEEeCCCCcCCCccccccccccCCC-----CCCcEE
Q 027045 91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNM----SLFHPFE-ELQRLDLPGNWFTGIYENRAYDSFGSL-----KQLKML 159 (229)
Q Consensus 91 ~~~v~~L~L~~-~l~~~~~~~~~~~~~l~~----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~l-----~~L~~L 159 (229)
...++.|++++ .+.+ ... ..|..++ +|++|++++|++++..+. .+..+ ++|++|
T Consensus 21 ~~~L~~L~Ls~n~l~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYS-----------ISTVELIQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSL 85 (362)
T ss_dssp CTTCCEEECTTSCGGG-----------SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEE
T ss_pred CCCceEEEccCCCCCh-----------HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEE
Confidence 34599999999 7765 233 4567788 899999999999987665 55554 899999
Q ss_pred EcCCCCCCCCCcccc----cCC-CCccEEeccCCcCCCCCChhh----cCC-CCCCCEEeccCCcCCCC
Q 027045 160 NLGDNFFNDSILPYL----NTL-TSLTTLILSDNSIEGSRTKQG----LAN-LRYLQVLDLSGNFNITS 218 (229)
Q Consensus 160 ~Ls~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~ip~~~----~~~-l~~L~~L~L~~N~l~~~ 218 (229)
++++|.+++..+..+ ..+ ++|++|++++|++++ .+... +.. .++|++|++++|.+++.
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 999999997776644 444 899999999999987 43323 334 36999999999999864
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.84 E-value=4.7e-10 Score=97.17 Aligned_cols=92 Identities=23% Similarity=0.244 Sum_probs=69.7
Q ss_pred ccCCCCCCcEEeCCCCcCC--C---ccccccccccCCCCCCcEEEcCCCCCC----CCCcccccCCCCccEEeccCCcCC
Q 027045 121 LFHPFEELQRLDLPGNWFT--G---IYENRAYDSFGSLKQLKMLNLGDNFFN----DSILPYLNTLTSLTTLILSDNSIE 191 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~ 191 (229)
.+..+++|++|++++|+++ | ..|. .+..+++|++|++++|.++ ..+|..+..+++|++|+|++|+++
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 3446778888888888887 3 3444 6777888888888888885 467777888888888888888887
Q ss_pred CC----CChhhc--CCCCCCCEEeccCCcCCC
Q 027045 192 GS----RTKQGL--ANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 192 ~~----ip~~~~--~~l~~L~~L~L~~N~l~~ 217 (229)
+. ++. .+ +++++|++|++++|.+++
T Consensus 258 ~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 258 ARGAAAVVD-AFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHH-HHHTCSSCCCCEEECCSSCCBH
T ss_pred hhhHHHHHH-HHhhccCCCeEEEECcCCcCCH
Confidence 63 343 45 348888899998888877
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=4e-08 Score=83.29 Aligned_cols=96 Identities=20% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCcc-EEeccCCcCCCCCChhhcCCCC
Q 027045 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLT-TLILSDNSIEGSRTKQGLANLR 203 (229)
Q Consensus 125 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~ip~~~~~~l~ 203 (229)
+++|+.+++++|+++.+.+. .|.++++|+.+++.+| ++...+..|.++.+|+ .+++.+ .++. ++...|.+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCT
T ss_pred cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCc
Confidence 56677777777777665555 6667777777777766 5544455666777776 777766 5554 5544667777
Q ss_pred CCCEEeccCCcCCCCC--CcccCCCC
Q 027045 204 YLQVLDLSGNFNITSG--SLTRLGRL 227 (229)
Q Consensus 204 ~L~~L~L~~N~l~~~~--~~~~l~~L 227 (229)
+|+.+++.+|.++.++ .|....+|
T Consensus 298 ~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred cCCEEEeCCCccCccchhhhcCCcch
Confidence 7777777666666653 34444444
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=3.8e-08 Score=83.41 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=76.6
Q ss_pred ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCc-EEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCC
Q 027045 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLK-MLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSR 194 (229)
Q Consensus 116 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 194 (229)
.+....|.++++|+.|++++| ++.+.+. .|.++++|+ .+++.+ .++...+..|.++++|+.++++.|+++. +
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I 312 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-L 312 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-E
T ss_pred eecHhhhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-c
Confidence 366778999999999999998 8876666 899999999 999998 7775667899999999999999999987 7
Q ss_pred ChhhcCCCCCCCEEec
Q 027045 195 TKQGLANLRYLQVLDL 210 (229)
Q Consensus 195 p~~~~~~l~~L~~L~L 210 (229)
+...|.++++|+.++.
T Consensus 313 ~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 313 GDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTTCTTCCCCEEEC
T ss_pred chhhhcCCcchhhhcc
Confidence 7778999999999874
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.66 E-value=1.7e-08 Score=83.70 Aligned_cols=81 Identities=25% Similarity=0.272 Sum_probs=65.3
Q ss_pred CCCCCCcEEeCCCCcCCCc--cccccccccCCCCCCcEEEcCCCCCCCCCcccccCCC--CccEEeccCCcCCCCCCh--
Q 027045 123 HPFEELQRLDLPGNWFTGI--YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLT--SLTTLILSDNSIEGSRTK-- 196 (229)
Q Consensus 123 ~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ip~-- 196 (229)
.++++|+.|+|++|+|+++ +|. .+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch
Confidence 3578999999999999994 345 667899999999999999964 3344444 999999999999876652
Q ss_pred ----hhcCCCCCCCEEe
Q 027045 197 ----QGLANLRYLQVLD 209 (229)
Q Consensus 197 ----~~~~~l~~L~~L~ 209 (229)
..+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 1367899999886
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.65 E-value=1e-09 Score=96.71 Aligned_cols=88 Identities=24% Similarity=0.213 Sum_probs=65.7
Q ss_pred CCCcEEeCCCCcCCCc----cccccccccCCCCCCcEEEcCCCCCCCCCcccccC-----CCCccEEeccCCcCCC----
Q 027045 126 EELQRLDLPGNWFTGI----YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT-----LTSLTTLILSDNSIEG---- 192 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~---- 192 (229)
++|++|++++|.+++. ++. .+..+++|++|++++|.+++..+..+.. .++|++|++++|++++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 388 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSS----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHH----HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHH----HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHH
Confidence 5778888888877764 233 5666788888888888887554444432 5788999999998884
Q ss_pred CCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 193 SRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 193 ~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
.+|. .+..+++|++|++++|++++.
T Consensus 389 ~l~~-~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 389 SLAA-TLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHH-HHHHCCCCCEEECCSSSCCHH
T ss_pred HHHH-HHHhCCCccEEECCCCCCCHH
Confidence 4665 677888999999999988764
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.59 E-value=2.4e-09 Score=94.32 Aligned_cols=94 Identities=21% Similarity=0.189 Sum_probs=64.7
Q ss_pred ccCCCCCCcEEeCCCCcCCCcccccccccc-CCCC----CCcEEEcCCCCCCC----CCcccccCCCCccEEeccCCcCC
Q 027045 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLK----QLKMLNLGDNFFND----SILPYLNTLTSLTTLILSDNSIE 191 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~----~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~ 191 (229)
.+..+++|++|++++|.++...+. .+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.++
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVH----CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHH----HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHH----HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 456678888888888888764332 22 2344 68888888888874 45777888888888888888876
Q ss_pred CCCCh----hhcCCCCCCCEEeccCCcCCCC
Q 027045 192 GSRTK----QGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 192 ~~ip~----~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+..+. ......++|++|++++|.+++.
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 42222 0122356788888888887763
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=1e-08 Score=88.96 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=62.8
Q ss_pred CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCC----CC
Q 027045 124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS----RT 195 (229)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip 195 (229)
..+.|++|+|++|.|+..........+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.++.. +.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 4567888888888876522110001446677888888888888642 244566677888888888888741 22
Q ss_pred hhhcCCCCCCCEEeccCCcCCCC
Q 027045 196 KQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 196 ~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
. .+...++|++|+|++|.|+..
T Consensus 233 ~-~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 233 R-AAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp H-HHHHCSSCCEEECTTSSCCHH
T ss_pred H-HHHhCCCCCEEeccCCCCCHH
Confidence 2 344568888888888887654
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=1e-08 Score=88.90 Aligned_cols=116 Identities=20% Similarity=0.130 Sum_probs=80.9
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCcccccccccc-CCCCCCcEEEcCCCCCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLKQLKMLNLGDNFFNDS 169 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~ 169 (229)
..++.|+|++ .+.... .......+++|++|+|++|.++..........+ ...++|++|+|++|.++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~----------~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~ 170 (372)
T 3un9_A 101 HALDEVNLASCQLDPAG----------LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170 (372)
T ss_dssp SCEEEEECTTCCCCHHH----------HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred CCceEEEecCCCCCHHH----------HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence 4788888888 664310 011123356789999999999865333000012 3568899999999998742
Q ss_pred ----CcccccCCCCccEEeccCCcCCCC----CChhhcCCCCCCCEEeccCCcCCCC
Q 027045 170 ----ILPYLNTLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 170 ----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
++..+...++|++|+|++|.++.. ++. .+...++|++|+|++|.|+..
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHH
Confidence 344457789999999999998751 233 567788999999999999764
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.19 E-value=1.2e-07 Score=86.02 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred CCCCCcEEeCCCC--cCCCccccccccccC-CCCCCcEEEcCCCCCCC-CCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 124 PFEELQRLDLPGN--WFTGIYENRAYDSFG-SLKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 124 ~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
++++|++|+++.+ .+++.... .+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++......+
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred hCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 3556666666532 24443322 332 47889999999998875 3445567889999999999998753222245
Q ss_pred CCCCCCCEEeccCCcCCCC
Q 027045 200 ANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 200 ~~l~~L~~L~L~~N~l~~~ 218 (229)
..+++|++|++++|+++..
T Consensus 510 ~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCBCCTT
T ss_pred HhcCccCeeECcCCcCCHH
Confidence 6789999999999998875
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=4.8e-07 Score=70.58 Aligned_cols=120 Identities=14% Similarity=0.082 Sum_probs=78.0
Q ss_pred CCcEEEEecCCC-ccccccCCCCCccccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC
Q 027045 91 TRRVMQLSLNET-IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169 (229)
Q Consensus 91 ~~~v~~L~L~~~-l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~ 169 (229)
...++.|+|+++ -.+. .+ . ..-...+...++|++|+|++|.|...-.......+...+.|++|+|++|.++..
T Consensus 35 ~~~L~~L~L~~n~~i~~--~g---~-~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPV--PT---L-KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp CTTCCEEECTTCTTCCH--HH---H-HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred CCCCCEEEecCCCCCCH--HH---H-HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 456888888773 3220 00 0 000123556788999999999987532110001455567899999999998743
Q ss_pred ----CcccccCCCCccEEec--cCCcCCCC----CChhhcCCCCCCCEEeccCCcCCC
Q 027045 170 ----ILPYLNTLTSLTTLIL--SDNSIEGS----RTKQGLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 170 ----~p~~l~~l~~L~~L~L--s~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~ 217 (229)
+...+...++|++|+| ++|.++.. +.. .+...++|++|++++|.+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCCh
Confidence 3455677788999999 88988752 222 45566889999999998753
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=4e-07 Score=71.08 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=71.2
Q ss_pred ccCCCCCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCC--
Q 027045 121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS-- 193 (229)
Q Consensus 121 ~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~-- 193 (229)
.+...+.|++|+|++| .+...--......+...++|++|+|++|.++.. +...+...++|++|+|++|.|+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4567889999999999 887531110111567788999999999998742 233455668899999999999852
Q ss_pred --CChhhcCCCCCCCEEec--cCCcCCCC
Q 027045 194 --RTKQGLANLRYLQVLDL--SGNFNITS 218 (229)
Q Consensus 194 --ip~~~~~~l~~L~~L~L--~~N~l~~~ 218 (229)
+.. .+...++|++|++ ++|.+...
T Consensus 111 ~~l~~-~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 111 LALVE-ALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHH-GGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHH-HHHhCCCceEEEecCCCCCCCHH
Confidence 233 5677789999999 88988764
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.08 E-value=1.1e-05 Score=70.53 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=75.8
Q ss_pred ccCCcccCCCCCCcEEeCCCCcCC-----CccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcC
Q 027045 116 LLNMSLFHPFEELQRLDLPGNWFT-----GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSI 190 (229)
Q Consensus 116 ~l~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 190 (229)
.+....|.++++|+.+++.+|.+. .+.+. .|.++++|+.+++.+ .++......|.++.+|+.+++..| +
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 355678899999999999988776 34445 789999999999984 476555678889999999999655 6
Q ss_pred CCCCChhhcCCCCCCCEEeccCCcCCCC
Q 027045 191 EGSRTKQGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 191 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
+. +....|.++ +|+.+++.+|.+...
T Consensus 335 ~~-I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 335 TQ-INFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CE-ECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred cE-EcHHhCCCC-CCCEEEEcCCCCccc
Confidence 65 666688898 999999999987665
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.95 E-value=1.5e-06 Score=78.76 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=60.2
Q ss_pred CCCCCcEEeCCCCcCCCc----cccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCCCC
Q 027045 124 PFEELQRLDLPGNWFTGI----YENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT 195 (229)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip 195 (229)
.+++|++|++++|.+++. ++. .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ +|
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~ 236 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV 236 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH
T ss_pred hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH
Confidence 578888888888887664 222 345678888888888888732 33345577888888888888876 66
Q ss_pred hhhcCCCCCCCEEeccC
Q 027045 196 KQGLANLRYLQVLDLSG 212 (229)
Q Consensus 196 ~~~~~~l~~L~~L~L~~ 212 (229)
. .+.++++|++|+++.
T Consensus 237 ~-~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 237 G-FFKAAANLEEFCGGS 252 (592)
T ss_dssp H-HHHHCTTCCEEEECB
T ss_pred H-HHhhhhHHHhhcccc
Confidence 5 677777777777764
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.94 E-value=4.8e-07 Score=81.96 Aligned_cols=63 Identities=17% Similarity=0.092 Sum_probs=33.5
Q ss_pred CCCCcEEEcCCCCCCCCCcccc-cCCCCccEEeccCCcCCCCCChhhcCCCCCCCEEeccCCcC
Q 027045 153 LKQLKMLNLGDNFFNDSILPYL-NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN 215 (229)
Q Consensus 153 l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 215 (229)
+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++......+..+++|++|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5556666666666554333333 44566666666666664322211233456666666666655
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.90 E-value=7.9e-05 Score=65.01 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=19.2
Q ss_pred ccCCcccCCCCCCcEEeCCCCcCCCc
Q 027045 116 LLNMSLFHPFEELQRLDLPGNWFTGI 141 (229)
Q Consensus 116 ~l~~~~~~~l~~L~~L~Ls~N~l~~~ 141 (229)
.+....|.++++|+.+++++|+++.+
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred EehHHHhhCcccCCeeecCCCcceEe
Confidence 35556788888888888888776653
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=8.1e-06 Score=63.31 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=46.8
Q ss_pred CCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCC-CCCCCcccccCC----CCccEEeccCCc-CCCCCChhhcC
Q 027045 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLNTL----TSLTTLILSDNS-IEGSRTKQGLA 200 (229)
Q Consensus 127 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~ip~~~~~ 200 (229)
.|++||++++.++..--. .+..+++|++|+|+++. +++.--..+..+ ++|++|+|+++. ++..--. .+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred eEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence 567777777665543222 56667777777777764 553322334443 357777777653 5531111 355
Q ss_pred CCCCCCEEeccCCc
Q 027045 201 NLRYLQVLDLSGNF 214 (229)
Q Consensus 201 ~l~~L~~L~L~~N~ 214 (229)
++++|++|++++..
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 66777777776653
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.73 E-value=3.9e-06 Score=75.95 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=49.6
Q ss_pred cEEEEecCC-CccccccCCCCCccccCCcccC-CCCCCcEEeCCCC-cCCCc-cccccccccCCCCCCcEEEcCCCCCCC
Q 027045 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFH-PFEELQRLDLPGN-WFTGI-YENRAYDSFGSLKQLKMLNLGDNFFND 168 (229)
Q Consensus 93 ~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~ 168 (229)
+++.|++++ .+.+..+ ..+. .+++|++|++++| .++.. ++. .+..+++|++|++++|.+++
T Consensus 106 ~L~~L~L~~~~~~~~~~-----------~~l~~~~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCL-----------ELIAKSFKNFKVLVLSSCEGFSTDGLAA----IAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp TCCEEEEESCBCCHHHH-----------HHHHHHCTTCCEEEEESCEEEEHHHHHH----HHHHCTTCCEEECTTCEEEC
T ss_pred CCCeEEeeCcEEcHHHH-----------HHHHHhCCCCcEEeCCCcCCCCHHHHHH----HHHhCCCCCEEeCcCCccCC
Confidence 567777777 5544111 1121 3456666666655 33321 122 22345666666666666554
Q ss_pred CCccccc----CCCCccEEeccCCcCCCCCChh----hcCCCCCCCEEeccCC
Q 027045 169 SILPYLN----TLTSLTTLILSDNSIEGSRTKQ----GLANLRYLQVLDLSGN 213 (229)
Q Consensus 169 ~~p~~l~----~l~~L~~L~Ls~N~l~~~ip~~----~~~~l~~L~~L~L~~N 213 (229)
..+..+. .+++|++|++++|. . .+... .+.++++|++|++++|
T Consensus 171 ~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 171 VSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3333222 44566666666554 1 12111 1233456666666555
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.62 E-value=9.4e-05 Score=54.31 Aligned_cols=56 Identities=21% Similarity=0.145 Sum_probs=39.2
Q ss_pred cEEeCCCCcCC--CccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCC
Q 027045 129 QRLDLPGNWFT--GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE 191 (229)
Q Consensus 129 ~~L~Ls~N~l~--~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 191 (229)
..++.+++.++ . +|. .+ .++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~-vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS-LPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTT-SCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCcccc-CCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777888877 4 554 32 245778888888887555566777778888888888775
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.45 E-value=0.00073 Score=58.29 Aligned_cols=90 Identities=14% Similarity=0.259 Sum_probs=67.9
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
+....|.+++.|+.+.+. +.++.+... .|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++. +..
T Consensus 279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~~ 350 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IPE 350 (394)
T ss_dssp ECTTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CCG
T ss_pred ecCcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-EhH
Confidence 445567778888888885 456664455 7888999999999765 55344567889999999999654 665 766
Q ss_pred hhcCCCCCCCEEeccCCc
Q 027045 197 QGLANLRYLQVLDLSGNF 214 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N~ 214 (229)
..|.++.+|+.+++.+|.
T Consensus 351 ~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECCce
Confidence 689999999999988764
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.40 E-value=3.7e-05 Score=59.58 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=64.3
Q ss_pred CcEEEEecCC-CccccccCCCCCccccCCcccCCCCCCcEEeCCCCc-CCCccccccccccCCC----CCCcEEEcCCCC
Q 027045 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSL----KQLKMLNLGDNF 165 (229)
Q Consensus 92 ~~v~~L~L~~-~l~~~~~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l----~~L~~L~Ls~N~ 165 (229)
-++++||+++ .+.. .....+.++++|++|+|+++. |+..--. .+..+ ++|++|+++++.
T Consensus 61 ~~L~~LDLs~~~Itd-----------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~----~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-----------IGFDHMEGLQYVEKIRLCKCHYIEDGCLE----RLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCCCCG-----------GGGGGGTTCSCCCEEEEESCTTCCHHHHH----HHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCCccH-----------HHHHHhcCCCCCCEEEeCCCCccCHHHHH----HHHhcccccCCCCEEEcCCCC
Confidence 4699999999 7654 223446789999999999985 7653222 55554 479999999985
Q ss_pred -CCCCCcccccCCCCccEEeccCCc-CCC
Q 027045 166 -FNDSILPYLNTLTSLTTLILSDNS-IEG 192 (229)
Q Consensus 166 -l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ 192 (229)
++..--..+..+++|++|++++.. ++.
T Consensus 126 ~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 126 NVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 875545567889999999999875 553
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.32 E-value=0.00059 Score=58.33 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=62.4
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
+....|.+...|+.+.+..+ ++.+... .|.++.+|+.+.+.++.++..-...|.++.+|+.+.|..+ ++. |..
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~ 326 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQV 326 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CSEECTT----TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECT
T ss_pred eCccccceeehhcccccccc-ceecccc----ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHH
Confidence 44456677777777777543 4443344 6778888888888887777555567888888888888654 554 655
Q ss_pred hhcCCCCCCCEEeccCC
Q 027045 197 QGLANLRYLQVLDLSGN 213 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N 213 (229)
..|.++.+|+.+.+..+
T Consensus 327 ~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 327 YAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTCTTCCCCCCCTT
T ss_pred HHhhCCCCCCEEEECCc
Confidence 57888888888777543
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00054 Score=50.17 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=33.2
Q ss_pred CCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCC
Q 027045 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN 167 (229)
Q Consensus 126 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 167 (229)
++|++|+|++|+|+.+.+. .|..+++|++|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChh----hhhhccccCEEEecCCCee
Confidence 4689999999999997776 7888999999999999875
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.29 E-value=3.2e-05 Score=66.63 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=40.1
Q ss_pred CCCCCcEEEcCCCCCCCCCcccc---cCCCCccEEeccCCcCCCC----CChhhcCCCCCCCEEeccCCcCCC
Q 027045 152 SLKQLKMLNLGDNFFNDSILPYL---NTLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNIT 217 (229)
Q Consensus 152 ~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~ 217 (229)
.+++|++|++.+|.+++..+..+ ..+++|++|+|+.|.+++. ++. .+.++++|+.|++++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCCH
Confidence 46777777777777654333222 2456777888877777642 121 23456777888887777654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.12 E-value=0.001 Score=57.41 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=63.3
Q ss_pred cccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
..|....+|+.+.+.++ ++.+-.. .|.++.+|+.+++.++ ++..-...|.++.+|+.+++..| ++. +....|
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF 362 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK-IGANAF 362 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTB
T ss_pred ccccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE-ehHHHh
Confidence 45667777888887654 5554445 7888888998888754 55444567888889999988766 655 666678
Q ss_pred CCCCCCCEEeccCC
Q 027045 200 ANLRYLQVLDLSGN 213 (229)
Q Consensus 200 ~~l~~L~~L~L~~N 213 (229)
.++.+|+.+++..+
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 88899998888654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.06 E-value=0.0031 Score=53.76 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=73.3
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCCh
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 196 (229)
+....|.....|+.+.+..+ ++.+-.. .|.++..|+.+.+..+ ++......|.++.+|+.+.+.++.++. ++.
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~----aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~ 303 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSF----LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEP 303 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTT----TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECT
T ss_pred EccccccCCccceEEEcCCC-ccEeCcc----ccceeehhcccccccc-ceeccccccccccccccccccccccce-ehh
Confidence 44556778889999998766 6665555 7888999999999765 443445678899999999999988886 777
Q ss_pred hhcCCCCCCCEEeccCCcCCCC
Q 027045 197 QGLANLRYLQVLDLSGNFNITS 218 (229)
Q Consensus 197 ~~~~~l~~L~~L~L~~N~l~~~ 218 (229)
..|.++.+|+.+.+..+ ++.+
T Consensus 304 ~aF~~c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp TTTTTCTTCCEEECCTT-CCEE
T ss_pred hhhcCCCCCCEEEcCcc-ccEE
Confidence 78999999999999754 4444
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.98 E-value=0.0015 Score=56.25 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=63.6
Q ss_pred ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCC
Q 027045 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT 195 (229)
Q Consensus 116 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 195 (229)
.+....|.++.+|+.++|..+ ++.+-.. .|.++.+|+.+.+..+ ++..-...|.++.+|+.+++.+|....
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--- 371 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDD----AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--- 371 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHh----HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---
Confidence 456678999999999999865 6665556 8999999999999765 664456789999999999999876532
Q ss_pred hhhcCCCCCCCEEeccCCcC
Q 027045 196 KQGLANLRYLQVLDLSGNFN 215 (229)
Q Consensus 196 ~~~~~~l~~L~~L~L~~N~l 215 (229)
. .+..+.+|+.+.+..|.+
T Consensus 372 ~-~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 372 N-AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp H-TCBCCCCC----------
T ss_pred h-hhhccCCCCEEEeCCCCE
Confidence 2 567788899888877654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.75 E-value=0.0022 Score=55.27 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=65.9
Q ss_pred ccCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCCcCCCCCC
Q 027045 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT 195 (229)
Q Consensus 116 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 195 (229)
.+....|.++++|+.+++.++ ++.+-.. .|.++.+|+.+++..| ++..-...|.++.+|+.+++..+ ++. +.
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~ 381 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YR 381 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GG
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hh
Confidence 455678999999999999754 7775566 8999999999999877 66455678999999999999765 333 44
Q ss_pred hhhcCCCCCCCEE
Q 027045 196 KQGLANLRYLQVL 208 (229)
Q Consensus 196 ~~~~~~l~~L~~L 208 (229)
. .|.++++|+.+
T Consensus 382 ~-~F~~c~~L~~I 393 (394)
T 4fs7_A 382 Y-DFEDTTKFKWI 393 (394)
T ss_dssp G-GBCTTCEEEEE
T ss_pred h-eecCCCCCcEE
Confidence 3 68888888764
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.59 E-value=0.00024 Score=61.16 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=60.0
Q ss_pred CCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCcCCCCCChhhc
Q 027045 124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (229)
Q Consensus 124 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 199 (229)
.+++|++|++.+|.+....+. +......+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-. .+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l 327 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-EL 327 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HH
T ss_pred CCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HH
Confidence 478999999999888754332 111223578999999999999863 333445679999999999998752211 23
Q ss_pred CC-CCCCCEEeccCCc
Q 027045 200 AN-LRYLQVLDLSGNF 214 (229)
Q Consensus 200 ~~-l~~L~~L~L~~N~ 214 (229)
.. + ...++++.|.
T Consensus 328 ~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 328 QKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHC--CSEEECCSBC
T ss_pred HHHc--CCEEEecCCc
Confidence 22 2 3668898886
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.58 E-value=0.00084 Score=52.82 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=44.3
Q ss_pred cCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCCCCCCCC----CcccccCCCCccEEeccCCc---CCCC-
Q 027045 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNS---IEGS- 193 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~---l~~~- 193 (229)
+..-+.|+.|+|++|+|...--......+..-+.|++|+|++|.|+.. +-+.+..-..|++|+|++|. +...
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 344556666677666665422110000233345666667776666532 11233444556666666442 2210
Q ss_pred ---CChhhcCCCCCCCEEeccCCc
Q 027045 194 ---RTKQGLANLRYLQVLDLSGNF 214 (229)
Q Consensus 194 ---ip~~~~~~l~~L~~L~L~~N~ 214 (229)
+.. .+..-+.|+.|+++.|.
T Consensus 146 ~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHH-HHHhCCCcCeEeccCCC
Confidence 111 23444566666666553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.35 E-value=0.0035 Score=49.22 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=63.7
Q ss_pred cCCCCCCcEEeCCCC-cCCCccccccccccCCCCCCcEEEcCCCCCCCCC----cccccCCCCccEEeccCCcCCCC---
Q 027045 122 FHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI----LPYLNTLTSLTTLILSDNSIEGS--- 193 (229)
Q Consensus 122 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~--- 193 (229)
+.+-+.|++|+|++| +|...--......+..-+.|+.|+|++|.+...- ...+..-+.|++|+|++|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678999999986 7764211101115667789999999999997432 23344568899999999999852
Q ss_pred -CChhhcCCCCCCCEEeccCCc
Q 027045 194 -RTKQGLANLRYLQVLDLSGNF 214 (229)
Q Consensus 194 -ip~~~~~~l~~L~~L~L~~N~ 214 (229)
+-. .+..-..|++|+|++|.
T Consensus 117 ala~-aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLR-STLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHH-HTTTTCCCSEEECCCCS
T ss_pred HHHH-HHhhCCceeEEECCCCc
Confidence 222 35556789999998753
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.93 E-value=17 Score=24.51 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=26.1
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCccccccccccCCCCCCcEEEcCC
Q 027045 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD 163 (229)
Q Consensus 117 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~ 163 (229)
+....|.++++|+.+.|..+ ++.+-.. .|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~----aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDG----MFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTT----SSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHH----HHhccCCccEEEEcC
Confidence 55566777777777776543 3443334 666677777766654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.68 E-value=19 Score=24.28 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.9
Q ss_pred CcCCCccccccccccCCCCCCcEEEcCCCCCCCCCcccccCCCCccEEeccCC
Q 027045 136 NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188 (229)
Q Consensus 136 N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 188 (229)
..++.+-.. .|.++..|+.+.+..+- +..-...|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~----aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKS----LFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSC----TTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHH----HhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 345554445 78888899998887753 4344567888899988888654
Done!