Citrus Sinensis ID: 027046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQEDD
Secondary Structure (PSIPRED)
ccccHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccEEEEEccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHccccc
Coil and Loop (DISEMBL)
mkdteanrhrqpvftkkrdedknlksghalqmkprssnvgrgrkrkndslnketnglqmenfvniqippplkkqlvdDCEFITHlgklvklprtpnvddILEKYCDyrskkdglvadstGEIVKGLRCYFDKALPIMLLYKSEREqyedsmaadvspssvygAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFflsryhsaedvetsankqedd
Flexible Loop (DISEMBL)
mkdteanrhrqpvftkkrdedknlksghalqmkprssnvgrgrkrkndslnketnglqmenfVNIQIPPPLKKQLVDDCEFITHlgklvklprtpnvDDILEKYCdyrskkdglvadstgeivKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFlsryhsaedvetsankqedd
Low Complexity Region (SEG)
MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQEDD
Disordered region (IsUnstruct)
***********************************************************ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKS****************SVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRY****************
Disordered Region (DISOPRED)
******N***********************************************************IPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD*LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAE************
Disordered Region (DISEMBL)
***********PVFTKKRDEDKNLKSGHALQM****************SLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHS**************
Disordered Region (DISPRO)
********************************************************LQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDV*TS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQEDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q54RM0	379	NuA4 complex subunit EAF3	yes	no	0.720	0.435	0.417	2e-30
Q6C9M9	387	Chromatin modification-re	yes	no	0.868	0.514	0.364	3e-26
Q4P827	303	Chromatin modification-re	N/A	no	0.703	0.531	0.382	1e-25
Q6AYU1	323	Mortality factor 4-like p	yes	no	0.676	0.479	0.408	7e-25
Q5NVP9	323	Mortality factor 4-like p	yes	no	0.676	0.479	0.408	7e-25
P60762	362	Mortality factor 4-like p	no	no	0.676	0.428	0.408	1e-24
Q9UBU8	362	Mortality factor 4-like p	no	no	0.676	0.428	0.408	1e-24
Q5BBV4	327	Chromatin modification-re	yes	no	0.803	0.562	0.369	2e-24
P0CO86	305	Chromatin modification-re	yes	no	0.733	0.550	0.386	3e-23
P0CO87	305	Chromatin modification-re	N/A	no	0.733	0.550	0.386	3e-23

>sp|Q54RM0|EAF3_DICDI NuA4 complex subunit EAF3 homolog OS=Dictyostelium discoideum GN=DDB_G0283075 PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 10/175 (5%)

Query: 44  KRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEK 103
           +++NDS   +++  Q   F++I+IP  LK +LVDD   I +   ++ LP++PNV DIL K
Sbjct: 202 RKRNDS---KSSHFQSTKFIDIEIPLSLKNKLVDDWNSINNEKSILSLPKSPNVKDILNK 258

Query: 104 YCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADV--SPSSVY 161
             +   K     +    E++ G++ YF+KAL  +LLYK ER QY+  +  +   S S +Y
Sbjct: 259 IIEENDK-----SSECKEVINGIKQYFNKALGTLLLYKFERPQYDSILKTNPKKSMSDIY 313

Query: 162 GAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA 216
           GAEHLLRLFVKLP+LLV + +EE+T+T L+     +L++L+K+ ST FL  Y  A
Sbjct: 314 GAEHLLRLFVKLPQLLVISNLEEKTITQLKDAFEIVLEYLEKNSSTLFLKEYTIA 368

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Also component of a complex which acts to repress transcription by deacetylation of nucleosomal histones.
Dictyostelium discoideum (taxid: 44689)

>sp|Q6C9M9|EAF3_YARLI Chromatin modification-related protein EAF3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=EAF3 PE=3 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 12/211 (5%)

Query: 12  PVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPL 71
           P  T KR   K++ S  +    PR     RG     + L KE + L+ +  + + +P  L
Sbjct: 169 PAPTTKR---KSMASKDSPAEGPRPVKR-RGGLAALEDLEKEDDYLKRKE-IALVVPDKL 223

Query: 72  KKQLVDDCEFITHLGKLVKLPRTPNVDDILEKY---CDYRSKKDGLVADSTGEIVKGLRC 128
           K QLVDD EF+T   +LV LPR   V DIL+++    + + +     AD   E+V G++ 
Sbjct: 224 KAQLVDDWEFVTKDHQLVGLPRKVTVVDILKEFKKEAEAKYRPGSADADILNEVVSGIKL 283

Query: 129 YFDKALPIMLLYKSEREQY----EDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEE 184
           YFD++L  +LLY+ EREQY    +    ++ + S VYGAEHLLRLFV LP L+    ++ 
Sbjct: 284 YFDRSLGSILLYRFEREQYLQITQSPDHSNKTMSEVYGAEHLLRLFVSLPGLIAMTNMDA 343

Query: 185 ETLTLLQHKLVDLLKFLQKHQSTFFLSRYHS 215
           +++ +L+  L D ++FL  HQ T+FL   ++
Sbjct: 344 QSVAVLKEHLEDFVRFLSTHQKTYFLKEAYT 374

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q4P827|EAF3_USTMA Chromatin modification-related protein EAF3 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=EAF3 PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 103/196 (52%), Gaps = 35/196 (17%)

Query: 34  PRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPR 93
           P   +  RG KR  + +  E   L+    V I +P  LK QLVDD E IT  G+LV LPR
Sbjct: 111 PDRKSASRGTKRSREHVEAEEEFLKRPE-VKISLPDELKLQLVDDWENITKNGQLVPLPR 169

Query: 94  TPNVDDILEKY---------CDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSER 144
            P V DIL+ Y          D   ++   + D   E++KGL+ YFD++L   LLY+ ER
Sbjct: 170 NPCVKDILDDYRKHYLASKRSDPSKQRSPQLVD---EVLKGLKLYFDRSLGQNLLYRFER 226

Query: 145 EQYED----------------------SMAADVSPSSVYGAEHLLRLFVKLPELLVHAKI 182
            QY D                      SM  ++ PS+VYGAEHLLRLFV LP ++VH  +
Sbjct: 227 AQYVDYRKKNGPKMGDGDVGNARTANGSMGGEMEPSNVYGAEHLLRLFVTLPMIIVHTSM 286

Query: 183 EEETLTLLQHKLVDLL 198
           + E+++LL+  L + L
Sbjct: 287 DAESISLLKEHLAEFL 302

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q6AYU1|MO4L1_RAT Mortality factor 4-like protein 1 OS=Rattus norvegicus GN=Morf4l1 PE=2 SV=1

 Score =  114 bits (284), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 9/164 (5%)

Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 120
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  
Sbjct: 156 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 215

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 178
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 216 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 275

Query: 179 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
           +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 276 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 314

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones.Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Rattus norvegicus (taxid: 10116)

>sp|Q5NVP9|MO4L1_PONAB Mortality factor 4-like protein 1 OS=Pongo abelii GN=MORF4L1 PE=2 SV=1

 Score =  114 bits (284), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 9/164 (5%)

Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 120
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  
Sbjct: 156 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 215

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 178
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 216 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 275

Query: 179 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
           +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 276 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 314

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Pongo abelii (taxid: 9601)

>sp|P60762|MO4L1_MOUSE Mortality factor 4-like protein 1 OS=Mus musculus GN=Morf4l1 PE=2 SV=2

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 9/164 (5%)

Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 120
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  
Sbjct: 195 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 254

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 178
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 255 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 314

Query: 179 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
           +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 315 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 353

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Mus musculus (taxid: 10090)

>sp|Q9UBU8|MO4L1_HUMAN Mortality factor 4-like protein 1 OS=Homo sapiens GN=MORF4L1 PE=1 SV=2

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 9/164 (5%)

Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 120
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  
Sbjct: 195 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 254

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 178
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 255 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 314

Query: 179 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
           +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 315 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 353

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Homo sapiens (taxid: 9606)

>sp|Q5BBV4|EAF3_EMENI Chromatin modification-related protein eaf3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=eaf3 PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 8/192 (4%)

Query: 35  RSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRT 94
           ++S  GRG KR  D+  ++         V I +P  LK  LVDD E +T   ++V LP  
Sbjct: 114 QTSVPGRGTKRARDNDIEKEEHFYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALPAK 173

Query: 95  PNVDDILEKYC-DYRSKKDGLV-ADSTGEIVKGLRCYFDKALPIMLLYKSEREQYE---- 148
            +V+ IL+ Y  + R K+ G    D   E+V G+R YFDK+L  +LLY+ EREQY     
Sbjct: 174 SSVNQILDDYLKEERPKRTGSSEVDVLEEVVMGIRDYFDKSLDKILLYRFEREQYRVLRK 233

Query: 149 --DSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQS 206
             +S  AD  P  VYGAEHL RLF  +PEL+    ++ ++   L+ +L     +L K+ +
Sbjct: 234 RWESETADKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFTIWLSKNSN 293

Query: 207 TFFLSRYHSAED 218
            +F +RY +A +
Sbjct: 294 HYFATRYVTASN 305

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|P0CO86|EAF3_CRYNJ Chromatin modification-related protein EAF3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=EAF3 PE=3 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 8/176 (4%)

Query: 45  RKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKY 104
           R  D++  E++ ++    V I IP  LK  LVDD E +T   +LV LPR PNV ++LE+Y
Sbjct: 118 RGRDAMESESDFMKRPE-VKIVIPDVLKLVLVDDWENVTKNNQLVALPRKPNVRELLEEY 176

Query: 105 CDYRS--KKDGLVADSTG---EIVKGLRCYFDKALPIMLLYKSEREQY--EDSMAADVSP 157
             Y S  KK      +T    EI+ G+  YFDKAL   LLY+ ER QY  +     +   
Sbjct: 177 RQYASASKKQERSDRATALLSEIISGITLYFDKALGNNLLYRFERAQYVEQKRQNPEKPM 236

Query: 158 SSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRY 213
           S +YGAEHLLRLFV     + +  I+ E+L +L+  + D+++++ K Q   F+  Y
Sbjct: 237 SEIYGAEHLLRLFVNFGPFIAYTNIDTESLNILRDYINDIMQWMIKEQKRLFMKEY 292

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CO87|EAF3_CRYNB Chromatin modification-related protein EAF3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=EAF3 PE=3 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 8/176 (4%)

Query: 45  RKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKY 104
           R  D++  E++ ++    V I IP  LK  LVDD E +T   +LV LPR PNV ++LE+Y
Sbjct: 118 RGRDAMESESDFMKRPE-VKIVIPDVLKLVLVDDWENVTKNNQLVALPRKPNVRELLEEY 176

Query: 105 CDYRS--KKDGLVADSTG---EIVKGLRCYFDKALPIMLLYKSEREQY--EDSMAADVSP 157
             Y S  KK      +T    EI+ G+  YFDKAL   LLY+ ER QY  +     +   
Sbjct: 177 RQYASASKKQERSDRATALLSEIISGITLYFDKALGNNLLYRFERAQYVEQKRQNPEKPM 236

Query: 158 SSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRY 213
           S +YGAEHLLRLFV     + +  I+ E+L +L+  + D+++++ K Q   F+  Y
Sbjct: 237 SEIYGAEHLLRLFVNFGPFIAYTNIDTESLNILRDYINDIMQWMIKEQKRLFMKEY 292

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
356514437	325	PREDICTED: male-specific lethal 3 homolo	0.995	0.701	0.631	4e-76
356510513	322	PREDICTED: nuA4 complex subunit EAF3 hom	0.986	0.701	0.628	3e-74
449447041	313	PREDICTED: mortality factor 4-like prote	0.973	0.712	0.640	2e-73
359492003	305	PREDICTED: mortality factor 4-like prote	0.925	0.695	0.620	5e-72
224137656	272	predicted protein [Populus trichocarpa]	0.917	0.772	0.639	1e-71
302142251	306	unnamed protein product [Vitis vinifera]	0.930	0.696	0.615	2e-71
255567903	318	chromatin binding protein, putative [Ric	0.938	0.676	0.592	2e-69
224094262	332	predicted protein [Populus trichocarpa]	0.943	0.650	0.589	1e-68
356511911	319	PREDICTED: nuA4 complex subunit EAF3 hom	0.925	0.664	0.591	6e-68
255538164	341	chromatin binding protein, putative [Ric	0.829	0.557	0.642	5e-67

>gi|356514437|ref|XP_003525912.1| PREDICTED: male-specific lethal 3 homolog [Glycine max]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 144/228 (63%), Positives = 172/228 (75%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQME 60
           MK TE N  ++    +K   DKN K       K +++NV RGRKR+N+S+ KE   + +E
Sbjct: 98  MKHTEENMRKKHDLDEKLGNDKNAKIPRGSLAKSKTTNVSRGRKRRNESVIKEKPAVDLE 157

Query: 61  NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTG 120
             VNIQIPP LKKQLVDDCEFITHLGKLVKLPRTPNV  IL+ Y DYR KK GL+ DS  
Sbjct: 158 KLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGLMGDSVE 217

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 180
           EI+KGL CYFDKALP+MLLYK+E +QY+++  A+V PS++YGAEHLLRLFVKLPELL HA
Sbjct: 218 EIMKGLSCYFDKALPVMLLYKNEHQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHA 277

Query: 181 KIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQED 228
            IEE+TL  LQ  L+D L+FLQK+QSTFFLS YH AE +E S NKQ D
Sbjct: 278 SIEEKTLVELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQGD 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510513|ref|XP_003523982.1| PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 142/226 (62%), Positives = 168/226 (74%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQME 60
           MK TE N  ++    +K   DKN K       K + +NV RGRKR+N+S+ K    +  +
Sbjct: 92  MKHTEENMRKKHDLDEKLGNDKNAKVPRGSLAKSKPTNVSRGRKRRNESVIKGKPAVDPD 151

Query: 61  NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTG 120
             VNIQIPP LKKQLVDDCEFITHLGKLVKLPRTPNV  IL+ Y DYR KK G V DS  
Sbjct: 152 KLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGSVGDSVE 211

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 180
           EI+KGL CYFDKALP+MLLYK+ER+QY+++  A+V PS++YGAEHLLRLFVKLPELL HA
Sbjct: 212 EIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHA 271

Query: 181 KIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQ 226
            +EEETL  LQ  L+D L+FLQK+QSTFFLS YH AE +E S NKQ
Sbjct: 272 SVEEETLMELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQ 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447041|ref|XP_004141278.1| PREDICTED: mortality factor 4-like protein 1-like [Cucumis sativus] gi|449508171|ref|XP_004163239.1| PREDICTED: mortality factor 4-like protein 1-like [Cucumis sativus]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 146/228 (64%), Positives = 175/228 (76%), Gaps = 5/228 (2%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQME 60
           +K TE N  +Q    +KR  DK  K+  A  +KP+  NV +G+KRKND+ +KE   + +E
Sbjct: 91  LKFTEENVQKQQELNEKRGTDK--KASRASHIKPK--NVVKGKKRKNDA-SKEKGAMNVE 145

Query: 61  NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTG 120
             V+IQIP  LKKQLVDD EF+THLGKLVKLPRTPNVDDI++KY +YR KKD    +S G
Sbjct: 146 KLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVDDIMKKYLEYRLKKDATKDESIG 205

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 180
           EIVKGL CYFDKALP+MLLYKSER+QYE+ M  DVSPSS+YGAEHLLRLFV+LPELL  A
Sbjct: 206 EIVKGLICYFDKALPVMLLYKSERQQYEELMINDVSPSSIYGAEHLLRLFVRLPELLSQA 265

Query: 181 KIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQED 228
            IEEETL  LQ KLVDLLKFL+K+Q+ FFLS YH  E++ETS N  +D
Sbjct: 266 NIEEETLMELQQKLVDLLKFLRKNQNAFFLSSYHVPENMETSTNNADD 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492003|ref|XP_002283143.2| PREDICTED: mortality factor 4-like protein 1-like [Vitis vinifera]

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 134/216 (62%), Positives = 169/216 (78%), Gaps = 4/216 (1%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQME 60
           +K +E N  +Q    KK+  DKN K   A Q+KP+  N  RG+K KND + KE   + +E
Sbjct: 93  LKFSEENVQKQKALGKKQGIDKNTKPVRASQIKPK--NFARGKKWKNDCVTKE--AIPVE 148

Query: 61  NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTG 120
             VNIQIPP LKKQLVDDCEFITHLG+L++LPR P VD IL+KY DYR K+DG+++DS G
Sbjct: 149 KLVNIQIPPTLKKQLVDDCEFITHLGQLIRLPRAPTVDKILKKYLDYRIKRDGMISDSAG 208

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 180
           EI+KGLRCYFDKALP+MLLY+ ER+QY++++A +VSPS++YGAEHLLRLFVKLPELL HA
Sbjct: 209 EILKGLRCYFDKALPVMLLYERERQQYQEAIANNVSPSTIYGAEHLLRLFVKLPELLFHA 268

Query: 181 KIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA 216
            IE+ET   LQ +L+D LKFLQK+QS FFL+ Y S+
Sbjct: 269 NIEKETSKELQMELLDFLKFLQKNQSAFFLTSYISS 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137656|ref|XP_002327180.1| predicted protein [Populus trichocarpa] gi|222835495|gb|EEE73930.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/219 (63%), Positives = 165/219 (75%), Gaps = 9/219 (4%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSN---------VGRGRKRKNDSLN 51
           +K TE N  +Q    ++ + +   K+  A QMK ++S          V RGRKRKND+LN
Sbjct: 54  LKHTEENVQKQKALKERLEMEMKTKAVQAPQMKLKNSGGYCSGDIYAVSRGRKRKNDNLN 113

Query: 52  KETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKK 111
           KE + + +E  VN+QIPP LKKQLVDDCEFITH  KLVKLPR PNV DI +KYC+YRSKK
Sbjct: 114 KEKDLVPLEKLVNLQIPPTLKKQLVDDCEFITHQSKLVKLPRAPNVQDICKKYCEYRSKK 173

Query: 112 DGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFV 171
           D ++ +ST EI+KGLRCYFDKALP MLLYKSER+QY  ++  DVSPS VYGAEHLLRLFV
Sbjct: 174 DVMMPESTAEIMKGLRCYFDKALPAMLLYKSERQQYTYAIRDDVSPSMVYGAEHLLRLFV 233

Query: 172 KLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFL 210
           KLPELLVHA IEEETLT L  KLVD L+FLQK+QS FFL
Sbjct: 234 KLPELLVHANIEEETLTELHQKLVDFLRFLQKNQSAFFL 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142251|emb|CBI19454.3| unnamed protein product [Vitis vinifera]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 169/216 (78%), Gaps = 3/216 (1%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQME 60
           +K +E N  +Q    KK+  DKN K   A Q+KP+  N  RG+K KND + K+   + +E
Sbjct: 93  LKFSEENVQKQKALGKKQGIDKNTKPVRASQIKPK--NFARGKKWKNDCVTKK-EAIPVE 149

Query: 61  NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTG 120
             VNIQIPP LKKQLVDDCEFITHLG+L++LPR P VD IL+KY DYR K+DG+++DS G
Sbjct: 150 KLVNIQIPPTLKKQLVDDCEFITHLGQLIRLPRAPTVDKILKKYLDYRIKRDGMISDSAG 209

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 180
           EI+KGLRCYFDKALP+MLLY+ ER+QY++++A +VSPS++YGAEHLLRLFVKLPELL HA
Sbjct: 210 EILKGLRCYFDKALPVMLLYERERQQYQEAIANNVSPSTIYGAEHLLRLFVKLPELLFHA 269

Query: 181 KIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA 216
            IE+ET   LQ +L+D LKFLQK+QS FFL+ Y S+
Sbjct: 270 NIEKETSKELQMELLDFLKFLQKNQSAFFLTSYISS 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567903|ref|XP_002524929.1| chromatin binding protein, putative [Ricinus communis] gi|223535764|gb|EEF37426.1| chromatin binding protein, putative [Ricinus communis]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/228 (59%), Positives = 164/228 (71%), Gaps = 13/228 (5%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSS------------NVGRGRKRKND 48
           +K TE N  +Q    KK+  DK+ K G + Q KP++S            NV +G+KRK+D
Sbjct: 80  LKHTEENVVKQQALEKKQGVDKSSKLGRSAQTKPKTSTDAKVDKEDAKSNVAKGKKRKSD 139

Query: 49  SLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 108
           S   E + L  E  V IQIP  LKKQLVDD EF+    KLV+LPR+PNVDDIL KY +YR
Sbjct: 140 S-GIEKDNLSAEKLVKIQIPSTLKKQLVDDWEFVIQQDKLVRLPRSPNVDDILTKYLEYR 198

Query: 109 SKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLR 168
           SKKDG++ DS GEI+KG+RCYFDKALP+MLLYK ER QY+D++  D SPS++YGAEHLLR
Sbjct: 199 SKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERHQYDDAVENDASPSTIYGAEHLLR 258

Query: 169 LFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA 216
           LFVKLPELL +  IEEETL  LQ KL+D LKFLQK+QSTFFLS Y  +
Sbjct: 259 LFVKLPELLAYVNIEEETLARLQQKLLDFLKFLQKNQSTFFLSAYDGS 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094262|ref|XP_002310115.1| predicted protein [Populus trichocarpa] gi|222853018|gb|EEE90565.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 165/229 (72%), Gaps = 13/229 (5%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSS------------NVGRGRKRKND 48
           MK T  N  +Q    KK+  DK+LK G + Q KP++S            NV +G+KRK+D
Sbjct: 95  MKHTPDNVLKQQALEKKQGVDKSLKPGRSSQTKPKNSTDSKMDKEDPKSNVAKGKKRKSD 154

Query: 49  SLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 108
           S   E + L +E  V IQIP  LKKQLVDD EF+T   K VKLPR+PNVDDIL KY +Y 
Sbjct: 155 S-GMEKDNLPVEKLVKIQIPSTLKKQLVDDWEFVTQQDKFVKLPRSPNVDDILTKYLEYM 213

Query: 109 SKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLR 168
           SKKDG++ DS GEI+KG+RCYFDKALP+MLLYK ER+QY D++  DVSPS++YGAEHLLR
Sbjct: 214 SKKDGMITDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDTVKIDVSPSTIYGAEHLLR 273

Query: 169 LFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAE 217
           LFVKLPELL +  IEE+T T LQ KL+D LKFL K+QSTFFLS Y  ++
Sbjct: 274 LFVKLPELLAYVNIEEDTSTRLQQKLLDFLKFLHKNQSTFFLSAYDGSK 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511911|ref|XP_003524665.1| PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max]

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 133/225 (59%), Positives = 166/225 (73%), Gaps = 13/225 (5%)

Query: 1   MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSS------------NVGRGRKRKND 48
           MK TE N  +Q    KK++ DKN+KSG + Q K +SS            NV +G+KRK+D
Sbjct: 81  MKHTEENVMKQQALDKKQNVDKNVKSGRSSQGKAKSSTDAKMDKEDVKNNVSKGKKRKHD 140

Query: 49  SLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 108
           +  ++ +G  +E  V IQIP  LKKQLVDD + +T   KLVKLPR+P VD+IL KY +Y+
Sbjct: 141 AGVEKGSGT-VEKLVKIQIPATLKKQLVDDWDSVTQQDKLVKLPRSPTVDEILTKYLEYK 199

Query: 109 SKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLR 168
           SKKDG+  DS GEI+KG+RCYFDKALP+MLLYK ER+QY D++  +VSPS++YGAEHLLR
Sbjct: 200 SKKDGIAPDSIGEILKGIRCYFDKALPMMLLYKKERKQYNDAIVDNVSPSTIYGAEHLLR 259

Query: 169 LFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRY 213
           LFVKLPELL +  IEEETL  LQ KL+D LKFLQK+QSTFFLS Y
Sbjct: 260 LFVKLPELLAYVTIEEETLNRLQQKLLDFLKFLQKNQSTFFLSAY 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538164|ref|XP_002510147.1| chromatin binding protein, putative [Ricinus communis] gi|223550848|gb|EEF52334.1| chromatin binding protein, putative [Ricinus communis]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 155/193 (80%), Gaps = 3/193 (1%)

Query: 11  QPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPP 70
           Q     K+ ++KN K+G    +KP+SS+  RGRKRK+DSL+KE   L +E  VN+QIPP 
Sbjct: 108 QKFLVTKQGQEKNTKAGRGSHIKPKSSSAARGRKRKSDSLSKEKGILSLEKLVNLQIPPT 167

Query: 71  LKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYF 130
           LKKQL+DDC+FITHLGKLVKLPRTPNVDDI++KY DYR KKDGL++++ GEI+KGL  YF
Sbjct: 168 LKKQLLDDCQFITHLGKLVKLPRTPNVDDIMKKYLDYRLKKDGLISEAVGEIIKGLCWYF 227

Query: 131 DKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLL 190
           +KAL +MLLYKSEREQY D++  DVSPS+VYGAEHLLRLFVKLPELL++A IE+ETL  L
Sbjct: 228 NKALVVMLLYKSEREQYTDAIKDDVSPSTVYGAEHLLRLFVKLPELLIYANIEDETLMEL 287

Query: 191 QHKLVDLLKFLQK 203
           Q    D+L + Q+
Sbjct: 288 QQ---DMLAYEQR 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2024725	327	AT1G02740 [Arabidopsis thalian	0.960	0.672	0.563	1.3e-61
TAIR|locus:2114980	320	AT4G37280 [Arabidopsis thalian	0.995	0.712	0.506	6.6e-58
DICTYBASE|DDB_G0283075	379	DDB_G0283075 "NuA4 histone H4	0.834	0.503	0.386	5.4e-31
UNIPROTKB|F1N4R2	296	MORF4L1 "Uncharacterized prote	0.930	0.719	0.355	2.2e-25
UNIPROTKB|F1RKS0	362	MORF4L1 "Uncharacterized prote	0.934	0.591	0.345	2.2e-25
UNIPROTKB|K7GQW8	323	MORF4L1 "Uncharacterized prote	0.934	0.662	0.345	2.2e-25
ASPGD|ASPL0000050701	327	AN1976 [Emericella nidulans (t	0.816	0.571	0.385	2.9e-25
UNIPROTKB|B3KTM8	348	MORF4L1 "cDNA FLJ38504 fis, cl	0.934	0.614	0.345	2.9e-25
UNIPROTKB|Q9UBU8	362	MORF4L1 "Mortality factor 4-li	0.934	0.591	0.345	2.9e-25
MGI|MGI:1096551	362	Morf4l1 "mortality factor 4 li	0.934	0.591	0.345	2.9e-25

TAIR|locus:2024725 AT1G02740 [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 124/220 (56%), Positives = 162/220 (73%)

Query:     1 MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQME 60
             +K ++ N  +Q     K+   K+  +    +MKPRS NV RGRKRK DS++ E N L  +
Sbjct:   104 LKHSDENIEKQKEQGLKQQGIKSAMAWKVSKMKPRSPNVARGRKRKQDSVDTEKNVLPSD 163

Query:    61 NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTG 120
             N ++  IPP L+KQL+DD EF+T + KLV+LPR+PNVD IL+KY D + KK G V DS  
Sbjct:   164 NLLSFNIPPALRKQLLDDFEFVTQMQKLVQLPRSPNVDGILKKYIDSQMKKHGRVTDSLE 223

Query:   121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 180
             EI+KGLRCYFDKALP+MLLY +ER+QYE+S++  VSPS+VYGAEHLLRLFVKLPELLVH 
Sbjct:   224 EILKGLRCYFDKALPVMLLYNNERKQYEESVSGGVSPSTVYGAEHLLRLFVKLPELLVHV 283

Query:   181 KIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVE 220
              + EETL  LQ   VD+L+FL+K+QS  F+S Y + E++E
Sbjct:   284 NMAEETLKELQDNFVDILRFLRKNQSVLFVSTYKAVEEME 323

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2114980 AT4G37280 [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 122/241 (50%), Positives = 162/241 (67%)

Query:     1 MKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSS------------NVGRGRKRKND 48
             +K TE N  +Q    KK+  +K  KSG + Q K RSS            N  +G+KRK++
Sbjct:    81 LKHTEENLVKQKALDKKQGVEKGTKSGRSAQTKTRSSADTKADKDDTKTNAAKGKKRKHE 140

Query:    49 SLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 108
             S N++ N +  E  + IQIP  LKKQL DD E+I    K+VKLPR+PNVD+IL KY +++
Sbjct:   141 SGNEKDN-VTAEKLMKIQIPASLKKQLTDDWEYIAQKDKVVKLPRSPNVDEILSKYLEFK 199

Query:   109 SKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLR 168
             +KKDG+V DS  EI+KG+R YFDKALP+MLLYK ER QY++S+  D SPS+VYGAEHLLR
Sbjct:   200 TKKDGMVTDSVAEILKGIRSYFDKALPVMLLYKKERRQYQESIVDDTSPSTVYGAEHLLR 259

Query:   169 LFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQED 228
             LFVKLP+L  +  +EEET + +Q  L D LKF+QK+QSTF L   + ++ V     K +D
Sbjct:   260 LFVKLPDLFSYVNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPSAYDSDKVSDGKGKGKD 319

Query:   229 D 229
             D
Sbjct:   320 D 320

GO:0005634 "nucleus" evidence=ISM;IEA

DICTYBASE|DDB_G0283075 DDB_G0283075 "NuA4 histone H4 acetyltransferase complex subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 78/202 (38%), Positives = 120/202 (59%)

Query:    15 TKKRDEDKNLKSGHALQMKPRSSNVGRGRKRK-NDSLNKETNGLQMENFVNIQIPPPLKK 73
             +K  + + N  + +       ++N     KRK NDS   +++  Q   F++I+IP  LK 
Sbjct:   172 SKSNNNNNNNNNNNNNNNNNNNNNNNNNNKRKRNDS---KSSHFQSTKFIDIEIPLSLKN 228

Query:    74 QLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKA 133
             +LVDD   I +   ++ LP++PNV DIL K  +   K     +    E++ G++ YF+KA
Sbjct:   229 KLVDDWNSINNEKSILSLPKSPNVKDILNKIIEENDK-----SSECKEVINGIKQYFNKA 283

Query:   134 LPIMLLYKSEREQYEDSMAADV--SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQ 191
             L  +LLYK ER QY+  +  +   S S +YGAEHLLRLFVKLP+LLV + +EE+T+T L+
Sbjct:   284 LGTLLLYKFERPQYDSILKTNPKKSMSDIYGAEHLLRLFVKLPQLLVISNLEEKTITQLK 343

Query:   192 HKLVDLLKFLQKHQSTFFLSRY 213
                  +L++L+K+ ST FL  Y
Sbjct:   344 DAFEIVLEYLEKNSSTLFLKEY 365

GO:0005634 "nucleus" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|F1N4R2 MORF4L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 81/228 (35%), Positives = 120/228 (52%)

Query:     3 DTEANRHR--QPVFTK-KRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL-NKETNGLQ 58
             DT   + R  Q    K K+++ K   +G             + R R + ++ N+ET   +
Sbjct:    67 DTNLQKQRELQKANQKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMSR 126

Query:    59 MENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD- 117
             +E  V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +       
Sbjct:   127 VE--VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKE 184

Query:   118 -STGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLP 174
              +  E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++ 
Sbjct:   185 YAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIG 244

Query:   175 ELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
              +L +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct:   245 AMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 287

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

UNIPROTKB|F1RKS0 MORF4L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:     2 KDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL-NKETNGLQME 60
             K T   + +      K+++ K   +G             + R R + ++ N+ET   ++E
Sbjct:   135 KKTSGLQQKNVEVKTKKNKQKTPGNGEGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 194

Query:    61 NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--S 118
               V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +
Sbjct:   195 --VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYA 252

Query:   119 TGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPEL 176
               E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +
Sbjct:   253 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 312

Query:   177 LVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
             L +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct:   313 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 353

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|K7GQW8 MORF4L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:     2 KDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL-NKETNGLQME 60
             K T   + +      K+++ K   +G             + R R + ++ N+ET   ++E
Sbjct:    96 KKTSGLQQKNVEVKTKKNKQKTPGNGEGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 155

Query:    61 NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--S 118
               V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +
Sbjct:   156 --VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYA 213

Query:   119 TGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPEL 176
               E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +
Sbjct:   214 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 273

Query:   177 LVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
             L +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct:   274 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 314

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000050701 AN1976 [Emericella nidulans (taxid:162425)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 77/200 (38%), Positives = 113/200 (56%)

Query:    35 RSSNV-GRGRKRKNDS-LNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLP 92
             R ++V GRG KR  D+ + KE +     + V I +P  LK  LVDD E +T   ++V LP
Sbjct:   113 RQTSVPGRGTKRARDNDIEKEEHFYTRPS-VRIVMPDNLKSLLVDDWENVTKNQQVVALP 171

Query:    93 RTPNVDDILEKYC-DYRSKKDGLV-ADSTGEIVKGLRCYFDKALPIMLLYKSEREQYE-- 148
                +V+ IL+ Y  + R K+ G    D   E+V G+R YFDK+L  +LLY+ EREQY   
Sbjct:   172 AKSSVNQILDDYLKEERPKRTGSSEVDVLEEVVMGIRDYFDKSLDKILLYRFEREQYRVL 231

Query:   149 ----DSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 204
                 +S  AD  P  VYGAEHL RLF  +PEL+    ++ ++   L+ +L     +L K+
Sbjct:   232 RKRWESETADKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFTIWLSKN 291

Query:   205 QSTFFLSRYHSA--EDVETS 222
              + +F +RY +A  E +E S
Sbjct:   292 SNHYFATRYVTASNEYIEKS 311

GO:0071963 "establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0060195 "negative regulation of antisense RNA transcription" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0032221 "Rpd3S complex" evidence=IEA

GO:0033698 "Rpd3L complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

UNIPROTKB|B3KTM8 MORF4L1 "cDNA FLJ38504 fis, clone HCHON2000156, highly similar to Mortality factor 4-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:     2 KDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL-NKETNGLQME 60
             K T   + +      K+++ K   +G             + R R + ++ N+ET   ++E
Sbjct:   121 KKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 180

Query:    61 NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--S 118
               V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +
Sbjct:   181 --VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYA 238

Query:   119 TGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPEL 176
               E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +
Sbjct:   239 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 298

Query:   177 LVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
             L +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct:   299 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 339

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9UBU8 MORF4L1 "Mortality factor 4-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:     2 KDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL-NKETNGLQME 60
             K T   + +      K+++ K   +G             + R R + ++ N+ET   ++E
Sbjct:   135 KKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 194

Query:    61 NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--S 118
               V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +
Sbjct:   195 --VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYA 252

Query:   119 TGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPEL 176
               E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +
Sbjct:   253 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 312

Query:   177 LVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
             L +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct:   313 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 353

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0016580 "Sin3 complex" evidence=IDA

GO:0043968 "histone H2A acetylation" evidence=IDA

GO:0043967 "histone H4 acetylation" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0000724 "double-strand break repair via homologous recombination" evidence=IDA

GO:0016575 "histone deacetylation" evidence=IDA

MGI|MGI:1096551 Morf4l1 "mortality factor 4 like 1" [Mus musculus (taxid:10090)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:     2 KDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL-NKETNGLQME 60
             K T   + +      K+++ K   +G             + R R + ++ N+ET   ++E
Sbjct:   135 KKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE 194

Query:    61 NFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--S 118
               V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +
Sbjct:   195 --VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYA 252

Query:   119 TGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPEL 176
               E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +
Sbjct:   253 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 312

Query:   177 LVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
             L +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct:   313 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 353

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008283 "cell proliferation" evidence=IMP

GO:0016568 "chromatin modification" evidence=IEA

GO:0016575 "histone deacetylation" evidence=ISO

GO:0016580 "Sin3 complex" evidence=ISO

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0040008 "regulation of growth" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam05712	191	pfam05712, MRG, MRG	6e-63

>gnl|CDD|218713 pfam05712, MRG, MRG

 Score =  194 bits (494), Expect = 6e-63
 Identities = 85/188 (45%), Positives = 106/188 (56%), Gaps = 12/188 (6%)

Query: 36  SSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTP 95
           SS   RG KRK  S +++ +  + E  V I IP  LKK LVDD E+IT   KLV LP   
Sbjct: 1   SSAPARGTKRKRSSADEKEDNFRSEPRVRINIPDELKKLLVDDWEYITKDKKLVALPARV 60

Query: 96  NVDDILEKYCDYRSKKDGLVADSTG-----EIVKGLRCYFDKALPIMLLYKSEREQYED- 149
            V  ILE Y   R+ K      S       E+V GLR YF+KAL  +LLYK ER QY + 
Sbjct: 61  PVVTILEDYVKERAIKQDSSTSSARMELLEEVVDGLRIYFNKALGDLLLYKFERLQYLEL 120

Query: 150 ------SMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQK 203
                 S  +D  PS +YGAEHLLRLFVKLPELL    ++E++L  L   L D L+FL K
Sbjct: 121 LKDNLLSAESDKRPSDIYGAEHLLRLFVKLPELLSQTNMDEQSLNRLLKHLEDFLRFLAK 180

Query: 204 HQSTFFLS 211
           +   +F+ 
Sbjct: 181 NAEEYFVK 188

This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation. It contains 2 chromo domains and a leucine zipper motif. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PF05712	194	MRG: MRG; InterPro: IPR008676 This family consists	100.0
KOG3001	391	consensus Dosage compensation regulatory complex/h	100.0

>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3))

Probab=100.00  E-value=1.9e-51  Score=349.55  Aligned_cols=171  Identities=47%  Similarity=0.754  Sum_probs=127.0

Q ss_pred             CCCCcCCCCCCcccccccCCCcceEEeCChhHHHHHHHHHHHHhhCCceeeCCCCCCHHHHHHHHHHhhhccC--Cch--
Q 027046           40 GRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD--GLV--  115 (229)
Q Consensus        40 ~~~~kr~~~~~~e~~~~~~~~~~i~i~iP~~Lk~~LvdD~e~Itk~~~Lv~LP~~~tV~~IL~~Y~~~~~~~~--~~~--  115 (229)
                      +++++|++++   .++++...++++|+||..||.+|||||++|+++++|++|||++||++||++|.++.....  ...  
T Consensus         4 ~~~~~~~~~~---~~~~~~~~~~~~i~lP~~Lk~~LvdD~~~I~~~~~l~~LP~~~~V~~IL~~y~~~~~~~~~~~~~~~   80 (194)
T PF05712_consen    4 ARGKKRRRSS---SEDDSEEEPEIKIELPEELKKILVDDWELITKEKKLVKLPAKPSVDDILEDYVESFADSDDSEEESA   80 (194)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHHTS-EEE-SS-SSBHHHHHHHHHHHHHHCHCSS---T
T ss_pred             cccCCCCCcc---cccccccCceEEEECCHHHHHHHHHHHHHHHcCCceeeCCCCCCHHHHHHHHHHHHhhcccCcchhH
Confidence            3555665554   244557788999999999999999999999999999999999999999999999987432  111  


Q ss_pred             ---hhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcC------------CCCccccChhHHHHHHhhhHHHhhcC
Q 027046          116 ---ADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAAD------------VSPSSVYGAEHLLRLFVKLPELLVHA  180 (229)
Q Consensus       116 ---~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~~------------~~pS~iYGa~HLLRLfvkLP~ll~~t  180 (229)
                         ...+.|+++||+.|||++||++|||++||+||.+++...            .+||++||++|||||||+||+||+.+
T Consensus        81 ~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~  160 (194)
T PF05712_consen   81 EQERDLLKEVADGLRDYFNKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSST  160 (194)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhC
Confidence               146899999999999999999999999999999998653            49999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccC
Q 027046          181 KIEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRY  213 (229)
Q Consensus       181 ~~d~~s~~~l~~~l~~fl~fL~~n~~~~F~-~dY  213 (229)
                      +|++++++.|..++.+||+||++|.+.||. ++|
T Consensus       161 ~~~~~~~~~l~~~l~~fl~fL~~n~~~~f~~~~y  194 (194)
T PF05712_consen  161 NMDEESINILLEHLQDFLKFLEKNSEEYFSEEDY  194 (194)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHTHHHHS-GGGE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            999999999999999999999999999999 666

It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.

>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.1e-34  Score=268.73  Aligned_cols=173  Identities=40%  Similarity=0.609  Sum_probs=151.1

Q ss_pred             ccccCCCcceEEeCChhHHHHHHHHHHHHhhCCceeeCCCCCCHHHHHHHHHHhhhccC--Cc-hhhhHHHHHHHHHHHH
Q 027046           54 TNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD--GL-VADSTGEIVKGLRCYF  130 (229)
Q Consensus        54 ~~~~~~~~~i~i~iP~~Lk~~LvdD~e~Itk~~~Lv~LP~~~tV~~IL~~Y~~~~~~~~--~~-~~~~~~e~~~Gl~~YF  130 (229)
                      +..+...+++.+.||..|+.+|+|||+.|++..+++.+|+.++|+.|+..|........  +. ....+.+...|++.||
T Consensus       211 ~~~~~~~~~v~~~l~~~~~~~l~dd~~~vt~~~~~~~~~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~yf  290 (391)
T KOG3001|consen  211 PPTLPATVEVKLSLPQELKRSLVDDWDSVTEVDSLAELPQDVTVEQILKKYGFSEKKASGLSNSKEPEVLEVAAGLKRYF  290 (391)
T ss_pred             CCCCCccccccccCchhhcccccchhhhhhhhhhhhcccCCchhhhhhhhhhHhhhhccccccccccccccccccceeee
Confidence            33444467899999999999999999999999999999999999999999987765332  11 1223344559999999


Q ss_pred             hhhcCccCCChhhHhhHHHhhhcCC---CCccccChhHHHHHHhhhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHchhh
Q 027046          131 DKALPIMLLYKSEREQYEDSMAADV---SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQST  207 (229)
Q Consensus       131 n~~L~~~LLY~~ER~Qy~~~~~~~~---~pS~iYGa~HLLRLfvkLP~ll~~t~~d~~s~~~l~~~l~~fl~fL~~n~~~  207 (229)
                      |.+||.+|||++||.||.++..+..   +||++|||+|||||||+||+||.+++|+.++++.|..++++|++||.+|...
T Consensus       291 n~~lG~~llyk~Er~qy~~~~~~~~~Ds~~s~vyGa~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~~flk~L~~~~~~  370 (391)
T KOG3001|consen  291 NGQLGVMLLYKFERLQYAEVVAKYPKDSPPSNVYGAEHLLRLFVKLPEILKYTPMDEKSLALLLRHRKDFLKYLRKNSAS  370 (391)
T ss_pred             cccchhhhhhhhhhHHHHHHHhcCCCCCCcccchhHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999986433   4999999999999999999999999999999999999999999999999977


Q ss_pred             hcc-ccCCCCCHHHHHhhcc
Q 027046          208 FFL-SRYHSAEDVETSANKQ  226 (229)
Q Consensus       208 ~F~-~dY~~a~~eY~~~a~~  226 (229)
                      ||. ++|.+++++|.+.+-+
T Consensus       371 ~f~~s~y~~~~~e~~~~~~~  390 (391)
T KOG3001|consen  371 FFSSSDYSNASPEYSSSSLP  390 (391)
T ss_pred             cccccchhhhchhhhhcccC
Confidence            777 9999999999987754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
2lkm_B	172	Structural Basis For Molecular Interactions Involvi		4e-26
2aql_A	173	Crystal Structure Of The Mrg15 Mrg Domain Length =		1e-25
2f5j_A	181	Crystal Structure Of Mrg Domain From Human Mrg15 Le		1e-25
2y0n_A	211	Crystal Structure Of The Complex Between Dosage Com		2e-20

>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg Domains: Implications In Chromatin Biology Length = 172

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 9/164 (5%)
Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 120
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +YR  +        +  
Sbjct: 5   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYRKSRGNTDNKEYAVN 64
Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 178
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 65  EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 124
Query: 179 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
           +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 125 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 163

>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain Length = 173

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 95/166 (57%), Gaps = 13/166 (7%)
Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD----S 118
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +     D    +
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 63
Query: 119 TGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPEL 176
             E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +
Sbjct: 64  VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 123
Query: 177 LVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
           L +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 124 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 164

>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15 Length = 181

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 95/166 (57%), Gaps = 13/166 (7%)
Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD----S 118
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +     D    +
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 63
Query: 119 TGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPEL 176
             E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +
Sbjct: 64  VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 123
Query: 177 LVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 222
           L +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 124 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 164

>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage Compensation Factors Msl1 And Msl3 Length = 211

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 89/188 (47%), Gaps = 38/188 (20%)
Query: 60  ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVA--- 116
           E  + I+IP  LKKQL DDC +I    +LVKLP   N+  ILE Y  + +      A   
Sbjct: 5   ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANER 64
Query: 117 -----------------------DSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAA 153
                                  D   E+V GLR  FD  LP++LLY  E+ QY+   ++
Sbjct: 65  PRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS 124
Query: 154 --DVSPSS----------VYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFL 201
             D+ P++          +YGA+HLLRLFVKLPE+L      E+ L  L       L+FL
Sbjct: 125 KYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFL 184
Query: 202 QKHQSTFF 209
            ++   FF
Sbjct: 185 AEYHDDFF 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
2f5j_A	181	Mortality factor 4-like protein 1; MRG fold, mainl	8e-52
2y0n_A	211	MALE-specific lethal 3 homolog; transcription, chr	5e-44
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B Length = 181

 Score =  165 bits (418), Expect = 8e-52
 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 5/159 (3%)

Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVA--DSTG 120
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65

Query: 121 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 178
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 66  EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 125

Query: 179 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFF-LSRYHSA 216
           +  ++E++L LL + L D LK+L K+ +T F  S Y  A
Sbjct: 126 YTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVA 164

>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens} Length = 211

 Score =  146 bits (368), Expect = 5e-44
 Identities = 65/196 (33%), Positives = 85/196 (43%), Gaps = 38/196 (19%)

Query: 63  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVA------ 116
           + I+IP  LKKQL DDC +I    +LVKLP   N+  ILE Y  + +      A      
Sbjct: 8   ITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRH 67

Query: 117 --------------------DSTGEIVKGLRCYFDKALPIMLLYKSEREQYED------- 149
                               D   E+V GLR  FD  LP++LLY  E+ QY+        
Sbjct: 68  HHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYD 127

Query: 150 -----SMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 204
                       PS +YGA+HLLRLFVKLPE+L      E+ L  L       L+FL ++
Sbjct: 128 IPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEY 187

Query: 205 QSTFFLSRYHSAEDVE 220
              FF    + A    
Sbjct: 188 HDDFFPESAYVAACEA 203

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 39/253 (15%), Positives = 72/253 (28%), Gaps = 83/253 (32%)

Query: 43  RKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPR--------- 93
           +    D L        +E+ +N  + P   +++ D    +        +P          
Sbjct: 348 KHVNCDKLTT-----IIESSLN-VLEPAEYRKMFDRL-SV--FPPSAHIPTILLSLIWFD 398

Query: 94  --TPNVDDILEKYCDYRS-KKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSER---EQY 147
               +V  ++ K   Y   +K     +ST  I      Y +  + +   Y   R   + Y
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQP--KESTISI---PSIYLELKVKLENEYALHRSIVDHY 453

Query: 148 EDSMAA---DVSPSSV------YGAEHLLRL-----FVKLPELL-----VHAKIEEETL- 187
                    D+ P  +      +   HL  +           +      +  KI  ++  
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 188 ---------TLLQ---------------HKLV-DLLKFLQKHQSTFFLSRY--------- 213
                    TL Q                +LV  +L FL K +     S+Y         
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

Query: 214 HSAEDVETSANKQ 226
              E +   A+KQ
Sbjct: 574 AEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2f5j_A	181	Mortality factor 4-like protein 1; MRG fold, mainl	100.0
2y0n_A	211	MALE-specific lethal 3 homolog; transcription, chr	100.0
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	85.37

>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B

Probab=100.00  E-value=1e-57  Score=383.46  Aligned_cols=169  Identities=40%  Similarity=0.602  Sum_probs=148.9

Q ss_pred             CCcceEEeCChhHHHHHHHHHHHHhhCCceeeCCCCCCHHHHHHHHHHhhhccCC--chhhhHHHHHHHHHHHHhhhcCc
Q 027046           59 MENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDG--LVADSTGEIVKGLRCYFDKALPI  136 (229)
Q Consensus        59 ~~~~i~i~iP~~Lk~~LvdD~e~Itk~~~Lv~LP~~~tV~~IL~~Y~~~~~~~~~--~~~~~~~e~~~Gl~~YFn~~L~~  136 (229)
                      ++++++|.||+.||.+|||||++||++++|++|||++||++||++|+++....+.  ...+.+.|+++||++|||++||.
T Consensus         2 ~~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~   81 (181)
T 2f5j_A            2 NRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGT   81 (181)
T ss_dssp             ----CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHccc
Confidence            4578999999999999999999999999999999999999999999999876442  22357899999999999999999


Q ss_pred             cCCChhhHhhHHHhhhc--CCCCccccChhHHHHHHhhhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccC
Q 027046          137 MLLYKSEREQYEDSMAA--DVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRY  213 (229)
Q Consensus       137 ~LLY~~ER~Qy~~~~~~--~~~pS~iYGa~HLLRLfvkLP~ll~~t~~d~~s~~~l~~~l~~fl~fL~~n~~~~F~-~dY  213 (229)
                      +|||++||+||.++++.  +.+||++|||+|||||||+||+||+.|+||+++++.|+.++.+||+||++|.++||. ++|
T Consensus        82 ~LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y  161 (181)
T 2f5j_A           82 QLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDY  161 (181)
T ss_dssp             HSCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGE
T ss_pred             ccCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhc
Confidence            99999999999999864  458999999999999999999999999999999999999999999999999999995 999


Q ss_pred             CCCCHHHHHhhccC
Q 027046          214 HSAEDVETSANKQE  227 (229)
Q Consensus       214 ~~a~~eY~~~a~~~  227 (229)
                      ++++|+|+++|.++
T Consensus       162 ~~~~~eY~~~~~~~  175 (181)
T 2f5j_A          162 EVAPPEYHRKAVLE  175 (181)
T ss_dssp             EECCHHHHC-----
T ss_pred             CCCCHHHHHHHhhh
Confidence            99999999999876

>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-54  Score=372.54  Aligned_cols=165  Identities=41%  Similarity=0.625  Sum_probs=142.8

Q ss_pred             CcceEEeCChhHHHHHHHHHHHHhhCCceeeCCCCCCHHHHHHHHHHhhhccC------------C--------------
Q 027046           60 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD------------G--------------  113 (229)
Q Consensus        60 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~Lv~LP~~~tV~~IL~~Y~~~~~~~~------------~--------------  113 (229)
                      +++|+|.||+.||++|||||++||++++|++|||++||++||++|+++.....            +              
T Consensus         5 ~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~   84 (211)
T 2y0n_A            5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAE   84 (211)
T ss_dssp             --CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------CT
T ss_pred             CceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccchh
Confidence            56799999999999999999999999999999999999999999998865210            0              


Q ss_pred             chhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhc------------CCCCccccChhHHHHHHhhhHHHhhcCC
Q 027046          114 LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAA------------DVSPSSVYGAEHLLRLFVKLPELLVHAK  181 (229)
Q Consensus       114 ~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~------------~~~pS~iYGa~HLLRLfvkLP~ll~~t~  181 (229)
                      ...+.++|+++||+.|||++||.+|||++||+||.++++.            +.+||++|||+|||||||+||+||+.|+
T Consensus        85 ~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t~  164 (211)
T 2y0n_A           85 KNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMS  164 (211)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcCC
Confidence            1234689999999999999999999999999999999842            3589999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccCCCCCHHHHHhh
Q 027046          182 IEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRYHSAEDVETSAN  224 (229)
Q Consensus       182 ~d~~s~~~l~~~l~~fl~fL~~n~~~~F~-~dY~~a~~eY~~~a  224 (229)
                      ||+++++.|+.++++||+||++|.++||. ++|++++++|+++.
T Consensus       165 ~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~~~~~~~~~~~  208 (211)
T 2y0n_A          165 FSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTK  208 (211)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEECC--------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCChhccCCCCHHHHhhc
Confidence            99999999999999999999999999996 89999988887653

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=85.37  E-value=8.4  Score=27.70  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=55.2

Q ss_pred             CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCC-CCccccChhHHHHHH
Q 027046           92 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADV-SPSSVYGAEHLLRLF  170 (229)
Q Consensus        92 P~~~tV~~IL~~Y~~~~~~~~~~~~~~~~e~~~Gl~~YFn~~L~~~LLY~~ER~Qy~~~~~~~~-~pS~iYGa~HLLRLf  170 (229)
                      |...|+.+.+++|+.+.. .+ .....+..-...|+.|++.+-..                 +. .+++ -...++-+.+
T Consensus         4 ~~~~t~~~~~~~fl~~l~-~~-~s~~Ti~~Y~~~l~~f~~~l~~~-----------------~~~~l~~-it~~~i~~y~   63 (117)
T 3nrw_A            4 RPSLSPREARDRYLAHRQ-TD-AADASIKSFRYRLKHFVEWAEER-----------------DITAMRE-LTGWKLDEYE   63 (117)
T ss_dssp             CCCCCHHHHHHHHHHHHT-TT-SCHHHHHHHHHHHHHHHHHHHHT-----------------TCCSGGG-CCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHHHc-----------------CCCChHH-CCHHHHHHHH
Confidence            677899999999999886 22 22223444444555554432100                 01 1111 2344555555


Q ss_pred             hhhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHc
Q 027046          171 VKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH  204 (229)
Q Consensus       171 vkLP~ll~~t~~d~~s~~~l~~~l~~fl~fL~~n  204 (229)
                      ..|-    ...+.+.+++.....|..|++|+.+.
T Consensus        64 ~~l~----~~~~s~~Ti~~~ls~lr~f~~~l~~~   93 (117)
T 3nrw_A           64 TFRR----GSDVSPATLNGEMQTLKNWLEYLARI   93 (117)
T ss_dssp             HHHH----TSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHH----hCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            4432    25688999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00