BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027047
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W4L|A Chain A, Human Dcmp Deaminase
pdb|2W4L|B Chain B, Human Dcmp Deaminase
pdb|2W4L|C Chain C, Human Dcmp Deaminase
pdb|2W4L|D Chain D, Human Dcmp Deaminase
pdb|2W4L|E Chain E, Human Dcmp Deaminase
pdb|2W4L|F Chain F, Human Dcmp Deaminase
Length = 178
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/164 (56%), Positives = 121/164 (73%), Gaps = 4/164 (2%)
Query: 64 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 123
KR YL W +YFMA+AFLSA+RSKDPN QVGAC+V+ + I+GIGYNG P GCSDD LPW
Sbjct: 5 KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPW 64
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
+ ++ + L+TKYPYVCHAE+NAI+N N G +YV +FPCNECAK+IIQ+G+ EV
Sbjct: 65 RRTAE--NKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEV 122
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE 227
I F+ + ++SD A A+ L +MAGV RK P+ +I+I F+
Sbjct: 123 I-FMSDKYHDSDEA-TAARLLFNMAGVTFRKFIPKCSKIVIDFD 164
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 69 LSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
LSW DYFMA A L ++RS VGA LV + II GYNG G +D
Sbjct: 39 LSWQDYFMANAELISKRSTCNRAYVGAVLVKNNRII-ATGYNG---GVADTD----NCDD 90
Query: 129 IGDPLETKYPY-VCHAEVNAILNT--NHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
+G +E + HAE+NA++ SA +YVT FPC C K ++Q+GV ++ Y
Sbjct: 91 VGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITY 150
Query: 186 FVEKRLN 192
R++
Sbjct: 151 NTAYRIH 157
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 37/145 (25%)
Query: 76 MAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSD-------------- 118
+ IA+L ++ SK + +VGA ++ ++G I+ GYNG P G C D
Sbjct: 7 LQIAYLVSQESKCCSWKVGA-VIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKH 65
Query: 119 ----------------DKLPWAKKSKIGDPLETKYPYVCHAEVNAIL--NTNHASAAGQR 160
D+ AK+ + + + HAE+NAIL N +S G
Sbjct: 66 AIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEI-HAELNAILFAAENGSSIEGAT 124
Query: 161 LYVTMFPCNECAKIIIQSGVSEVIY 185
+YVT+ PC +CAK I QSG+ +++Y
Sbjct: 125 MYVTLSPCPDCAKAIAQSGIKKLVY 149
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
Length = 373
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 39/154 (25%)
Query: 70 SWDDYFMAIAFLSA---ERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKK 126
S ++Y+M +A A E + N VGA +V +DG I+G+G +
Sbjct: 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAH---------------- 54
Query: 127 SKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGV 180
K G+ HAEV+AI + A A G +YVT+ PC+ CA++II SG+
Sbjct: 55 LKYGE---------AHAEVHAI-HMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGI 104
Query: 181 SEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK 214
V FV R N VA ++ AG++VR+
Sbjct: 105 KRV--FVAMRDPNPLVAG-RGISMMKEAGIEVRE 135
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 36/122 (29%)
Query: 72 DDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
D+Y+ A A A+R + PN VG C++ +DG I+G GY+ +
Sbjct: 30 DEYYXARALKLAQRGRFTTHPNPNVG-CVIVKDGEIVGEGYH----------------QR 72
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
G+P HAEV+A L A G YVT+ PC+ C +I +GV+
Sbjct: 73 AGEP---------HAEVHA-LRXAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVAR 122
Query: 183 VI 184
V+
Sbjct: 123 VV 124
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 36/122 (29%)
Query: 72 DDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
D+Y+ A A A+R + PN VG C++ +DG I+G GY+ +
Sbjct: 8 DEYYXARALKLAQRGRFTTHPNPNVG-CVIVKDGEIVGEGYH----------------QR 50
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
G+P HAEV+A L A G YVT+ PC+ C +I +GV+
Sbjct: 51 AGEP---------HAEVHA-LRXAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVAR 100
Query: 183 VI 184
V+
Sbjct: 101 VV 102
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate.
pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate
Length = 161
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 71 WDDYFMAIAFLSAERS-KDPNRQVGACLVS-QDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
WD M IA+ A K+ +G CL++ +DG +LG G+N + + K S
Sbjct: 13 WDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHN----------MRFQKGSA 62
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAA---GQRLYVTMFPCNECAKIIIQSGVSEVI 184
H E++ + N LY T+ PC+ C II G+ +
Sbjct: 63 -----------TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCV 110
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
Length = 158
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 71 WDDYFMAIAFLSAERS-KDPNRQVGACLVS-QDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
WD M IA+ A K+ +G CL++ +DG +LG G+N + + K S
Sbjct: 10 WDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHN----------MRFQKGSA 59
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAA---GQRLYVTMFPCNECAKIIIQSGVSEVI 184
H E++ + N LY T+ PC+ C II G+ +
Sbjct: 60 -----------TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCV 107
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
Query: 73 DYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDP 132
+YF+ +A A+R+ + ++ ++G I+ +N ++ DP
Sbjct: 24 EYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSV--------------EELKDP 69
Query: 133 LETKYPYVCHAEVNAI------LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
HAE+ AI LNT + G LYVT+ PC C+ ++ S + +VI+
Sbjct: 70 -------TAHAEMLAIKEACRRLNTKYLE--GCELYVTLEPCIMCSYALVLSRIEKVIF 119
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
Length = 161
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 71 WDDYFMAIAFLSAERS-KDPNRQVGACLVS-QDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
WD M IA+ A K+ +G CL++ +DG +LG G+N + + K S
Sbjct: 13 WDQKGMDIAYEEALLGYKEGGVPIGGCLINNKDGSVLGRGHN----------MRFQKGSA 62
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAA---GQRLYVTMFPCNECAKIIIQSGVSEVI 184
H E++ + N LY T+ PC+ C II G+ +
Sbjct: 63 -----------TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCV 110
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
Length = 161
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 71 WDDYFMAIAFLSAERS-KDPNRQVGACLVS-QDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
WD M IA+ A K+ +G CL++ +DG +LG G+N + + K S
Sbjct: 13 WDQKGMDIAYEEALLGYKEGGVPIGGCLINNKDGSVLGRGHN----------MRFQKGSA 62
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAA---GQRLYVTMFPCNECAKIIIQSGVSEVI 184
H E++ + N LY T+ PC+ C II G+ +
Sbjct: 63 -----------TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCV 110
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
Length = 161
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 26/119 (21%)
Query: 71 WDDYFMAIAFLSAERS-KDPNRQVGACLVS-QDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
WD M IA+ A K+ +G CL++ +DG +LG G+N + + K S
Sbjct: 13 WDQKGMDIAYEEALLGYKEGGVPIGGCLINNKDGSVLGRGHN----------MRFQKGSA 62
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAA---GQRLYVTMFPCNECAKIIIQSGVSEVI 184
H E++ + N LY T+ PC C II G+ +
Sbjct: 63 -----------TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCEMCTGAIIMYGIPRCV 110
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
Length = 161
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 28/120 (23%)
Query: 71 WDDYFMAIAFLSAERS-KDPNRQVGACLVS-QDGIILGIGYNG-FPRGCSDDKLPWAKKS 127
WD IA+ A K+ +G CL++ +DG +LG G+N F +G +
Sbjct: 13 WDQKGXDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNXRFQKGSA---------- 62
Query: 128 KIGDPLETKYPYVCHAEVNAILNTNHASAA---GQRLYVTMFPCNECAKIIIQSGVSEVI 184
H E++ + N LY T+ PC+ C II G+ +
Sbjct: 63 ------------TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDXCTGAIIXYGIPRCV 110
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 69 LSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
L YFM A +E+S C++ +DG I+G G+N
Sbjct: 13 LEEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNA----------------- 55
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQR-----LYVTMFPCNECAKIIIQSGVSEV 183
E + HAE+ AI N +A R L+VT+ PC C+ I + + V
Sbjct: 56 ----REESNQAIMHAEMMAI-NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHV 110
Query: 184 IY 185
IY
Sbjct: 111 IY 112
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 73 DYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
+Y+M A A+R+ D VGA LV + +I G G+N
Sbjct: 10 EYWMRHALTLAKRAWDEREVPVGAVLVHNNRVI-GEGWN--------------------R 48
Query: 132 PLETKYPYVCHAEVNAI----LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
P+ P HAE+ A+ L + LYVT+ PC CA +I S + V++
Sbjct: 49 PIGRHDP-TAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVF 105
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
From Salmonella Enterica
Length = 183
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 73 DYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
+Y+M A A+R+ D VGA LV +I G G+N IG
Sbjct: 20 EYWMRHALTLAKRAWDEREVPVGAVLVHNHRVI-GEGWN----------------RPIG- 61
Query: 132 PLETKYPYVCHAEVNAI----LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
++ HAE+ A+ L + LYVT+ PC CA ++ S + V++
Sbjct: 62 ----RHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVF 115
>pdb|3NRG|A Chain A, Crystal Structure Of A Tetr Family Transcriptional
Regulator (Caur_2714) From Chloroflexus Aurantiacus
J-10-Fl At 2.56 A Resolution
pdb|3NRG|B Chain B, Crystal Structure Of A Tetr Family Transcriptional
Regulator (Caur_2714) From Chloroflexus Aurantiacus
J-10-Fl At 2.56 A Resolution
pdb|3NRG|C Chain C, Crystal Structure Of A Tetr Family Transcriptional
Regulator (Caur_2714) From Chloroflexus Aurantiacus
J-10-Fl At 2.56 A Resolution
pdb|3NRG|D Chain D, Crystal Structure Of A Tetr Family Transcriptional
Regulator (Caur_2714) From Chloroflexus Aurantiacus
J-10-Fl At 2.56 A Resolution
pdb|3NRG|E Chain E, Crystal Structure Of A Tetr Family Transcriptional
Regulator (Caur_2714) From Chloroflexus Aurantiacus
J-10-Fl At 2.56 A Resolution
Length = 217
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 121 LPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGV 180
LP K+S++ D L ++ + V+ T A A Y +C +IQ G+
Sbjct: 10 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGI 69
Query: 181 SEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQI 222
+ F+ + S A + L G++ + H P++ QI
Sbjct: 70 EQKTAFLRQTPPASTTDXFAYLRWLLDVGIQFQFHNPRLAQI 111
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
Length = 159
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 68 YLSWDDYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKK 126
+++ D YFM +A A+++ +GA + D +I
Sbjct: 3 HMTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVI---------------------- 40
Query: 127 SKIGDPLETKYPYVCHAEVNAILNTNHASAA----GQRLYVTMFPCNECAKIIIQSGVSE 182
++ + ET HAE AI + G LYVT+ PC CA I+ S +
Sbjct: 41 ARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPR 100
Query: 183 VIY 185
V+Y
Sbjct: 101 VVY 103
>pdb|3G8Q|A Chain A, A Cytidine Deaminase Edits C-To-U In Transfer Rnas In
Archaea
pdb|3G8Q|B Chain B, A Cytidine Deaminase Edits C-To-U In Transfer Rnas In
Archaea
pdb|3G8Q|C Chain C, A Cytidine Deaminase Edits C-To-U In Transfer Rnas In
Archaea
pdb|3G8Q|D Chain D, A Cytidine Deaminase Edits C-To-U In Transfer Rnas In
Archaea
Length = 278
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 158 GQRLYVTMFPCNECAKIIIQSGVSEVIYF 186
G+ ++VT PC CA+ + ++GV+ V+Y
Sbjct: 57 GKVVFVTARPCLYCARELAEAGVAGVVYL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,625,654
Number of Sequences: 62578
Number of extensions: 211771
Number of successful extensions: 831
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 20
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)