BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027047
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1
Length = 178
Score = 199 bits (506), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 121/164 (73%), Gaps = 4/164 (2%)
Query: 64 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 123
KR YL W +YFMA+AFLSA+RSKDPN QVGAC+V+ + I+GIGYNG P GCSDD+LPW
Sbjct: 8 KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLPW 67
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
+ +K + L+TKYPYVCHAE+NAI+N N G +YV +FPCNECAK+IIQ+G+ EV
Sbjct: 68 RRTAK--NKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEV 125
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE 227
I F+ + ++SD A A+ L MAGV RK P+ +I+I F+
Sbjct: 126 I-FMSDKYHDSDEA-TAARLLFDMAGVTFRKFIPKCSKIVIDFD 167
>sp|P32321|DCTD_HUMAN Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2
Length = 178
Score = 197 bits (500), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 92/164 (56%), Positives = 121/164 (73%), Gaps = 4/164 (2%)
Query: 64 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 123
KR YL W +YFMA+AFLSA+RSKDPN QVGAC+V+ + I+GIGYNG P GCSDD LPW
Sbjct: 8 KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPW 67
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
+ ++ + L+TKYPYVCHAE+NAI+N N G +YV +FPCNECAK+IIQ+G+ EV
Sbjct: 68 RRTAE--NKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEV 125
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE 227
I F+ + ++SD A A+ L +MAGV RK P+ +I+I F+
Sbjct: 126 I-FMSDKYHDSDEA-TAARLLFNMAGVTFRKFIPKCSKIVIDFD 167
>sp|Q9VWA2|DCTD_DROME Probable deoxycytidylate deaminase OS=Drosophila melanogaster
GN=CG6951 PE=2 SV=1
Length = 203
Score = 196 bits (499), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 99/185 (53%), Positives = 124/185 (67%), Gaps = 8/185 (4%)
Query: 48 VVASKVVS--SRSPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIIL 105
V A ++S S+SP + KRK YL WDDYFMA + LSA+RSKDP QVGAC+V I+
Sbjct: 4 VSAQDLISQLSKSP-ESHKRKEYLHWDDYFMATSLLSAKRSKDPVTQVGACIVDSQNRIV 62
Query: 106 GIGYNGFPRGCSDDKLPWAKKSKIG---DPLETKYPYVCHAEVNAILNTNHASAAGQRLY 162
IGYNGFPR CSDD PW+K K DPLE K YV HAE NAILN+N S +G RLY
Sbjct: 63 AIGYNGFPRNCSDDVFPWSKAKKGSQEFDPLEDKKMYVVHAEANAILNSNGMSLSGTRLY 122
Query: 163 VTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQI 222
T+FPCNECAK+IIQ G+S+V+Y +K + Y AS ++L GV+ ++H PQ + I
Sbjct: 123 TTLFPCNECAKLIIQVGISQVLYLSDKYADKP--TYRASKRMLDAVGVEYKRHIPQKKTI 180
Query: 223 LITFE 227
I F+
Sbjct: 181 TIDFD 185
>sp|Q5M9G0|DCTD_RAT Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1
Length = 178
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 119/164 (72%), Gaps = 4/164 (2%)
Query: 64 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 123
KR YL W +YFMA+AFLSA+RSKDP+ QVGAC+V+ + I+GIGYNG P GCSDD LPW
Sbjct: 8 KRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPW 67
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
+ ++ + L+TKYPYVCHAE+NAI+N N A G +YV +FPCNECAK+IIQ+G+ EV
Sbjct: 68 RRTAE--NKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEV 125
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE 227
I+ +K ++ + A+ L +AGV RK P+ +I+I F+
Sbjct: 126 IFMSDKYHDSEETT--AARLLFKLAGVTFRKFTPKYSKIVIDFD 167
>sp|Q8K2D6|DCTD_MOUSE Deoxycytidylate deaminase OS=Mus musculus GN=Dctd PE=2 SV=1
Length = 178
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 88/164 (53%), Positives = 119/164 (72%), Gaps = 4/164 (2%)
Query: 64 KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 123
KR YL W +YFMA+AFLSA+RSKDP+ QVGAC+V+ + I+GIGYNG P GCSDD LPW
Sbjct: 8 KRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPW 67
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
+ ++ + L+TKYPYVCHAE+NAI+N N A G +YV +FPCNECAK+IIQ+G+ EV
Sbjct: 68 RRTAE--NKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEV 125
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE 227
I+ +K ++ + A+ L +AGV RK P+ +I+I F+
Sbjct: 126 IFMSDKYHDSEETT--AARLLFKLAGVTFRKFTPKYSKIVIDFD 167
>sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS=Caenorhabditis elegans
GN=ZK643.2 PE=3 SV=1
Length = 197
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 90/142 (63%), Gaps = 8/142 (5%)
Query: 67 GYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKK 126
G L F+ IA +++ RSKDPN QVG +V +D I+ +GYNGFP G DD W K+
Sbjct: 46 GDLKKHQRFLRIAKVTSLRSKDPNTQVGCVIVDKDNCIVSVGYNGFPIGVDDDVFRWDKE 105
Query: 127 SKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYF 186
DP + K+ YV HAE+NAI+N + +YVT+FPCN+CA+++IQS V +V YF
Sbjct: 106 ----DPEDNKHLYVVHAEMNAIINKRCTTLHDCTVYVTLFPCNKCAQMLIQSRVKKV-YF 160
Query: 187 VEKRLNNSDVAYIASHKLLSMA 208
+E R ++A+ AS K+L A
Sbjct: 161 LENR---DELAFRASKKMLDHA 179
>sp|P06773|DCTD_YEAST Deoxycytidylate deaminase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DCD1 PE=1 SV=2
Length = 312
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 70 SWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKI 129
SWD YFM +A L+A RS R+VG C++ ++ ++ GYNG PR ++ +
Sbjct: 162 SWDSYFMKLATLAASRSNCMKRRVG-CVIVRECRVIATGYNGTPRHLTNCFNGGCPRCND 220
Query: 130 GDPLETKYPYVCHAEVNAILNTNHASAAGQR--LYVTMFPCNECAKIIIQSGVSEVIYFV 187
GD HAE NA+L GQ LY PC C+ I+Q+G+SEV+Y
Sbjct: 221 GDSRNLHTCLCLHAEENALLEAGR-DRVGQNATLYCDTCPCLTCSVKIVQTGISEVVYSQ 279
Query: 188 EKRLNNSDVAYIASHKLLSMAGVKVRK 214
R++ S K+L AG+ VR+
Sbjct: 280 SYRMDEE------SFKVLKNAGITVRQ 300
>sp|O43012|DCTD_SCHPO Deoxycytidylate deaminase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPBC2G2.13c PE=3 SV=2
Length = 322
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 70 SWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSDDKLPWAKK 126
SWD YFM +A L+A+RS R+VG LV + +I GYNG PRG C++ P
Sbjct: 173 SWDSYFMEMASLAAKRSNCMKRRVGCVLVRGNRVI-ATGYNGTPRGATNCNEGGCPRCNS 231
Query: 127 -SKIGDPLETKYPYVC-HAEVNAILNTNHASAAGQR-LYVTMFPCNECAKIIIQSGVSEV 183
S G L+T +C HAE NA+L LY PC C+ I Q G+ EV
Sbjct: 232 ASSCGKELDT---CLCLHAEENALLEAGRERVGNNAILYCDTCPCLTCSVKITQLGIKEV 288
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQIL 223
+Y ++ ++ AS LL AGV++R++ P I
Sbjct: 289 VYHTSYNMD----SHTAS--LLQAAGVQLRQYIPPENSIF 322
>sp|P33968|YLXG_VIBFI Uncharacterized deaminase in luxG 3'region OS=Vibrio fischeri PE=3
SV=1
Length = 147
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 71 WDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIG 130
W F +A L SKDP+ QVGA ++++ I+ +G+NG+P G SD S
Sbjct: 5 WAKRFFQMAELVGSWSKDPSTQVGA-VITKHNRIVSVGFNGYPHGVSD--------SADT 55
Query: 131 DPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVI--YFVE 188
D E KY HAE NAIL G ++VT FPC CA IIQ+G+S+V E
Sbjct: 56 DEREIKYLKTLHAEENAILFAKR-DLEGCDIWVTHFPCPNCAAKIIQTGISKVYCPEQTE 114
Query: 189 KRLNNSDVAYIASHKLLSMAGVKV 212
L+ S + S AGV+V
Sbjct: 115 DFLSRWGEKIQVSQDMFSQAGVEV 138
>sp|P32393|COMEB_BACSU ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB
PE=3 SV=1
Length = 189
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 69 LSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSDDKLPWAK 125
+SW+ YFMA + L A RS P VGA +V +I G GYNG G C+D+
Sbjct: 4 ISWNQYFMAQSHLLALRSTCPRLSVGATIVRDKRMIAG-GYNGSIAGGVHCADEGCLM-- 60
Query: 126 KSKIGDPLETKYPYVCHAEVNAILNTNH--ASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
++ HAE+NAIL + G +YVT +PC +C K IIQ+G+ V
Sbjct: 61 -------IDDHCARTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQCCKSIIQAGIKTV 113
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFEER 229
Y + + + + +L AGV V Q ++ ++++ + R
Sbjct: 114 YYAEDYKTHPY------AQELFEQAGVTVE--QVELDEMIVDLKNR 151
>sp|O22000|DCTD_BPMD2 Deoxycytidylate deaminase OS=Mycobacterium phage D29 GN=36.1 PE=3
SV=2
Length = 128
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 71 WDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CS------DDKL 121
WD+YF+ IA +A+RS +VGA +V +D + G GYNG P G CS +
Sbjct: 6 WDEYFLGIATAAAQRSDCERSKVGA-VVVKDRRVRGTGYNGAPAGAAGCSTCPRRLSGAV 64
Query: 122 PWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVS 181
P G T+ V HAE NA+L + G LYVT PC C+ +I SG+
Sbjct: 65 PGVSDYSSG---ATRCVAV-HAEANALLYCDREDLIGATLYVTREPCYACSNLIAASGIE 120
Query: 182 EVIY 185
V+Y
Sbjct: 121 RVVY 124
>sp|P16006|DCTD_BPT4 Deoxycytidylate deaminase OS=Enterobacteria phage T4 GN=CD PE=1
SV=1
Length = 193
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 37/145 (25%)
Query: 76 MAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSD-------------- 118
+ IA+L ++ SK + +VGA ++ ++G I+ GYNG P G C D
Sbjct: 7 LQIAYLVSQESKCCSWKVGA-VIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKH 65
Query: 119 ----------------DKLPWAKKSKIGDPLETKYPYVCHAEVNAIL--NTNHASAAGQR 160
D+ AK+ + + + HAE+NAIL N +S G
Sbjct: 66 AIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEI-HAELNAILFAARNGSSIEGAT 124
Query: 161 LYVTMFPCNECAKIIIQSGVSEVIY 185
+YVT+ PC +CAK I QSG+ +++Y
Sbjct: 125 MYVTLSPCPDCAKAIAQSGIKKLVY 149
>sp|P00814|DCTD_BPT2 Deoxycytidylate deaminase OS=Enterobacteria phage T2 GN=CD PE=1
SV=1
Length = 188
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 37/145 (25%)
Query: 76 MAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSD-------------- 118
+ IA+L ++ SK + +VGA ++ ++G I+ GYNG P G C +
Sbjct: 7 LQIAYLVSQESKCCSWKVGA-VIEKNGRIISTGYNGSPAGGVNCDNYAAIEGWLLNKPKH 65
Query: 119 ----------------DKLPWAKKSKIGDPLETKYPYVCHAEVNAIL--NTNHASAAGQR 160
D+ AK+ + E HAE+NAIL N +S G
Sbjct: 66 TIIQGHKPECVSFGTSDRFVLAKEHRSAHS-EWSSKNEIHAELNAILFAARNGSSIEGAT 124
Query: 161 LYVTMFPCNECAKIIIQSGVSEVIY 185
+YVT+ PC +CAK I QSG+ +++Y
Sbjct: 125 MYVTLSPCPDCAKAIAQSGIKKLVY 149
>sp|Q5U3U4|CDAC1_DANRE Cytidine and dCMP deaminase domain-containing protein 1 OS=Danio
rerio GN=cdadc1 PE=2 SV=1
Length = 471
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 79 AFLSAERSKDPNRQVGACLVSQ------DGI----ILGIGYNGFPRGCSDDKLPWAKKSK 128
A L A R++DP VGA + ++ DG ++G GYN +P G + P K
Sbjct: 321 ARLLACRTEDPKVGVGAVIWAEGKQSQCDGTGQLYLVGCGYNAYPVGSQYAEYP-QMDHK 379
Query: 129 IGDPLETKYPYVCHAEVNAIL--NTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYF 186
+ KY Y+ HAE NA+ + + ++VT PC+EC +I +G+ + IY
Sbjct: 380 QEERQNRKYRYILHAEQNALTFRSAEIKAEDNTMMFVTKCPCDECVPLIGCAGIKQ-IYT 438
Query: 187 VEKRLN--NSDVAYIASHKL 204
+ N D++Y+ +KL
Sbjct: 439 TDLDSNKVKHDISYLRFNKL 458
>sp|Q8BMD5|CDAC1_MOUSE Cytidine and dCMP deaminase domain-containing protein 1 OS=Mus
musculus GN=Cdadc1 PE=2 SV=1
Length = 523
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 74 YFMAIAFLSAERSKDPNRQVGACLVSQ------DGI----ILGIGYNGFPRGCSDDKLPW 123
+ M A L A R++D VGA + ++ DG +G GYN FP G P
Sbjct: 322 HCMVQARLLAYRTEDHKTGVGAVIWAEAKSRSCDGTGAMYFIGCGYNAFPVGSEYADFPH 381
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQR--LYVTMFPCNECAKIIIQSGVS 181
K D K+ Y+ HAE NA+ +R ++VT PC+EC +I +G+
Sbjct: 382 MD-DKHKDREIRKFRYIIHAEQNALTFRCQDIKPEERSMIFVTKCPCDECVPLIKGAGIK 440
Query: 182 EVIYF-VEKRLNNSDVAYIASHKLLSMAGVK 211
++ V+ +D++Y+ K + GV+
Sbjct: 441 QIYAGDVDVGKKKADISYM---KFGELEGVR 468
>sp|Q9BWV3|CDAC1_HUMAN Cytidine and dCMP deaminase domain-containing protein 1 OS=Homo
sapiens GN=CDADC1 PE=2 SV=1
Length = 514
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 74 YFMAIAFLSAERSKDPNRQVGACLVSQ------DGI----ILGIGYNGFPRGCSDDKLPW 123
+ M A L A R++D VGA + ++ DG +G GYN FP G P
Sbjct: 321 HCMVQARLLAYRTEDHKTGVGAVIWAEGKSRSCDGTGAMYFVGCGYNAFPVGSEYADFPH 380
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQR--LYVTMFPCNECAKIIIQSGVS 181
K D K+ Y+ HAE NA+ +R ++VT PC+EC +I +G+
Sbjct: 381 MD-DKQKDREIRKFRYIIHAEQNALTFRCQEIKPEERSMIFVTKCPCDECVPLIKGAGIK 439
Query: 182 EV 183
++
Sbjct: 440 QI 441
>sp|Q4R683|CDAC1_MACFA Cytidine and dCMP deaminase domain-containing protein 1 OS=Macaca
fascicularis GN=CDADC1 PE=2 SV=1
Length = 515
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 74 YFMAIAFLSAERSKDPNRQVGACLVSQ------DGI----ILGIGYNGFPRGCSDDKLPW 123
+ M A L A R++D VGA + ++ DG +G GYN FP G P
Sbjct: 322 HCMVQARLLAYRTEDHKTGVGAVIWAEGKSRSCDGTGAMYFVGCGYNAFPVGSEYADFPH 381
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQR--LYVTMFPCNECAKIIIQSGVS 181
K D K+ Y+ HAE NA+ +R ++VT PC+EC +I +G+
Sbjct: 382 MD-DKQKDREIRKFRYIIHAEQNALTFRCQEIKPEERSMIFVTKCPCDECVPLIKGAGIK 440
Query: 182 EV 183
++
Sbjct: 441 QI 442
>sp|Q5RAX4|CDAC1_PONAB Cytidine and dCMP deaminase domain-containing protein 1 OS=Pongo
abelii GN=CDADC1 PE=2 SV=1
Length = 515
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 74 YFMAIAFLSAERSKDPNRQVGACLVSQ------DGI----ILGIGYNGFPRGCSDDKLPW 123
+ M A L A R++D VGA + ++ DG +G GYN FP G P
Sbjct: 322 HCMVQARLLAYRTEDHKTGVGAVIWAEGKSRSCDGTGAMYFVGCGYNAFPVGSEYADFPH 381
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQR--LYVTMFPCNECAKIIIQSGVS 181
K D K+ Y+ HAE NA+ +R ++VT PC+EC +I +G+
Sbjct: 382 MD-DKQKDREIRKFRYIIHAERNALTFRCQEIKPEERSMIFVTKCPCDECVPLIKGAGIK 440
Query: 182 EV 183
++
Sbjct: 441 QI 442
>sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain
K12) GN=ribD PE=1 SV=1
Length = 367
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 39/150 (26%)
Query: 72 DDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
D+Y+MA A A+R + PN VG C++ +DG I+G GY+ +
Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVG-CVIVKDGEIVGEGYH----------------QR 45
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
G+P HAEV+A L A G YVT+ PC+ C +I +GV+
Sbjct: 46 AGEP---------HAEVHA-LRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVAR 95
Query: 183 VIYFVEKRLNNSDVAYIASHKLLSMAGVKV 212
V+ ++ N VA ++ L AG+ V
Sbjct: 96 VVASMQD--PNPQVAGRGLYR-LQQAGIDV 122
>sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain
168) GN=ribD PE=1 SV=1
Length = 361
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 39/152 (25%)
Query: 72 DDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
++Y+M +A A++ + + N VGA +V +DG I+G+G + K
Sbjct: 2 EEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAH----------------LK 44
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
G+ HAEV+AI + A A G +YVT+ PC+ CA++II SG+
Sbjct: 45 YGE---------AHAEVHAI-HMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKR 94
Query: 183 VIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK 214
V FV R N VA ++ AG++VR+
Sbjct: 95 V--FVAMRDPNPLVAG-RGISMMKEAGIEVRE 123
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain
VF5) GN=ribD PE=3 SV=1
Length = 356
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 47/149 (31%)
Query: 72 DDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
D +M +A A++ K PN VGA +V ++G I+G+GY+ K
Sbjct: 6 DKNYMKLALSLAKKRKGYTHPNPTVGAVVV-KEGKIVGLGYH----------------EK 48
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
G P HAEV A L A G LYVT+ PC C II+SG+
Sbjct: 49 AGKP---------HAEVMA-LGQAGEKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKR 98
Query: 183 VIYFVEKRLNNSDVAYIASHKLLSMAGVK 211
V+ VA + + L+S GV+
Sbjct: 99 VV-----------VATLDPNPLMSGKGVE 116
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD1 PE=3 SV=1
Length = 147
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 53/122 (43%), Gaps = 36/122 (29%)
Query: 72 DDYFMAIAF-LS--AERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
D ++M A LS E + PN VG C++ Q+ I+G G W KK
Sbjct: 3 DRFYMTRAIKLSKLGEFTTSPNPNVG-CVIVQNKKIVGEG--------------WHKK-- 45
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
G+ HAE+NA LN A G Y+T+ PCN C IIQSG+
Sbjct: 46 YGEN---------HAEINA-LNMAGEKAKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKN 95
Query: 183 VI 184
VI
Sbjct: 96 VI 97
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 27/133 (20%)
Query: 72 DDYFMAIAFLSAERSKDP-NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIG 130
D+ FM A + A+++ D VGA LV DG I+ GYN
Sbjct: 1110 DEIFMREALVEAKKAADTWEVPVGAVLV-HDGKIIARGYN-------------------- 1148
Query: 131 DPLETKYPYVCHAEVNAILNTNHA----SAAGQRLYVTMFPCNECAKIIIQSGVSEVIYF 186
+E HAE+ I + A A LYVT+ PC CA I+Q+ V+ +++
Sbjct: 1149 -LVEELRDSTAHAEMICIREGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWG 1207
Query: 187 VEKRLNNSDVAYI 199
+L +D ++I
Sbjct: 1208 APNKLLGADGSWI 1220
>sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens
GN=ribD PE=3 SV=1
Length = 371
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 36/126 (28%)
Query: 72 DDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
++Y+M A A R + PN VGA +V + I+ G+G + L + +
Sbjct: 2 EEYYMNTAIELARRGEGQTQPNPLVGAVVVKKRQIV-GMGAH----------LQYGE--- 47
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
HAEV+AI N + A G LYVT+ PC+ CA++I++SG+
Sbjct: 48 ------------AHAEVHAI-NMAGSLAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKR 94
Query: 183 VIYFVE 188
V VE
Sbjct: 95 VFIAVE 100
>sp|P78594|FCA1_CANAX Cytosine deaminase OS=Candida albicans GN=FCA1 PE=3 SV=1
Length = 150
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 69 LSWDDY-FMAIAFLSAERS-KDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKK 126
+++DD + +A A++S + +G+C++S D +LG G+N
Sbjct: 1 MTFDDKKGLQVALDQAKKSYSEGGIPIGSCIISSDDTVLGQGHN---------------- 44
Query: 127 SKIGDPLETKYPYVCHAEVNAILNTNHASAAGQR---LYVTMFPCNECAKIIIQSGVSEV 183
+I K+ + H E++A+ N + +Y T+ PC+ C I+ G V
Sbjct: 45 ERI-----QKHSAILHGEMSALENAGRLPGKTYKDCTIYTTLSPCSMCTGAILLYGFKRV 99
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKV 212
+ +V ++ + KLL GV+V
Sbjct: 100 VM-------GENVNFLGNEKLLIENGVEV 121
>sp|Q72IF6|TILS_THET2 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=tilS PE=3 SV=1
Length = 507
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 140 VCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVE 188
HAE+ +L A G RLYVT+ PC C + Q+GV EV+Y E
Sbjct: 418 TAHAEM-LLLREAGPEARGGRLYVTLEPCLMCHHALAQAGV-EVVYGAE 464
>sp|Q5SI38|TILS_THET8 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=tilS PE=3 SV=1
Length = 507
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 140 VCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVE 188
HAE+ +L A G RLYVT+ PC C + Q+GV EV+Y E
Sbjct: 418 TAHAEM-LLLREAGPEARGGRLYVTLEPCLMCHHALAQAGV-EVVYGAE 464
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein RibD OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ribD PE=3 SV=1
Length = 372
Score = 37.4 bits (85), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 39/150 (26%)
Query: 72 DDYFMAIAFLSAER---SKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
D ++M A A++ + PN VG C++ + II+G G W KK+
Sbjct: 3 DIFYMKKAIKLAKKGSLTTSPNPNVG-CIIVNNNIIVGSG--------------WHKKTG 47
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
+ HAE+ A L T+ A G Y+T+ PC+ C + + G+S
Sbjct: 48 MK-----------HAEIYA-LKTSGEKAKGATAYITLEPCSHFGKTPPCCVALTKYGISR 95
Query: 183 VIYFV---EKRLNNSDVAYIASHKLLSMAG 209
V+ +++ + V ++ H +L G
Sbjct: 96 VVIATLDPNPKVSGNGVKWLKKHGILVTIG 125
>sp|P57533|RIBD1_BUCAI Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=ribD1 PE=3 SV=2
Length = 147
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 39/151 (25%)
Query: 72 DDYFMAIAF-LS--AERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
D ++M A LS E + PN VG C++ ++ II+G G++ A K+
Sbjct: 3 DIFYMKRAIELSKLGEFTTAPNPNVG-CVIVKNNIIVGEGWH-----------EQAGKN- 49
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSE 182
HAE+NA++ A G YVT+ PCN C +I+SG++
Sbjct: 50 -------------HAEINALIMAGE-KAQGGTAYVTLEPCNHFGKTPPCCNALIKSGINR 95
Query: 183 VIYF---VEKRLNNSDVAYIASHKLLSMAGV 210
V+ +++ + + Y+ H + G+
Sbjct: 96 VVISNIDPNPKISGNGILYLKKHGICVKTGL 126
>sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=FCY1 PE=1 SV=1
Length = 158
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 28/120 (23%)
Query: 71 WDDYFMAIAFLSAERS-KDPNRQVGACLVS-QDGIILGIGYN-GFPRGCSDDKLPWAKKS 127
WD M IA+ A K+ +G CL++ +DG +LG G+N F +G +
Sbjct: 10 WDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSA---------- 59
Query: 128 KIGDPLETKYPYVCHAEVNAILNTNHASAA---GQRLYVTMFPCNECAKIIIQSGVSEVI 184
H E++ + N LY T+ PC+ C II G+ +
Sbjct: 60 ------------TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCV 107
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 69 LSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
L YFM A AE+S C++ +DG I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNA----------------- 47
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQR-----LYVTMFPCNECAKIIIQSGVSEV 183
E + HAE+ AI N +A R L+VT+ PC C+ I + + V
Sbjct: 48 ----REESNQAIMHAEMMAI-NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHV 102
Query: 184 IY 185
IY
Sbjct: 103 IY 104
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 69 LSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
L YFM A AE+S C++ +DG I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNA----------------- 47
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQR-----LYVTMFPCNECAKIIIQSGVSEV 183
E + HAE+ AI N +A R L+VT+ PC C+ I + + V
Sbjct: 48 ----REESNQAIMHAEMMAI-NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHV 102
Query: 184 IY 185
IY
Sbjct: 103 IY 104
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 69 LSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
L YFM A AE+S C++ +DG I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNA----------------- 47
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQR-----LYVTMFPCNECAKIIIQSGVSEV 183
E + HAE+ AI N +A R L+VT+ PC C+ I + + V
Sbjct: 48 ----REESNQAIMHAEMMAI-NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHV 102
Query: 184 IY 185
IY
Sbjct: 103 IY 104
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 69 LSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
L YFM A AE+S C++ +DG I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNA----------------- 47
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQR-----LYVTMFPCNECAKIIIQSGVSEV 183
E + HAE+ AI N +A R L+VT+ PC C+ I + + V
Sbjct: 48 ----REESNQAIMHAEMMAI-NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHV 102
Query: 184 IY 185
IY
Sbjct: 103 IY 104
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
Query: 73 DYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDP 132
+YF+ +A A+R+ + ++ ++G I+ +N ++ DP
Sbjct: 4 EYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSV--------------EELKDP 49
Query: 133 LETKYPYVCHAEVNAI------LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
HAE+ AI LNT + G LYVT+ PC C+ ++ S + +VI+
Sbjct: 50 -------TAHAEMLAIKEACRRLNTKYLE--GCELYVTLEPCIMCSYALVLSRIEKVIF 99
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 69 LSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSK 128
L YFM A AE+S C++ +DG I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNA----------------- 47
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQR-----LYVTMFPCNECAKIIIQSGVSEV 183
E + HAE+ AI N +A R L+VT+ PC C+ I + + V
Sbjct: 48 ----REESNQAIMHAEMMAI-NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHV 102
Query: 184 IY 185
IY
Sbjct: 103 IY 104
>sp|P71677|RIBD_MYCTU Riboflavin biosynthesis protein RibD OS=Mycobacterium tuberculosis
GN=ribD PE=3 SV=1
Length = 339
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 36/131 (27%)
Query: 89 PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148
P VGA +V +G I+G G P G GD HAEV A
Sbjct: 29 PKPPVGAVIVDPNGRIVGAGGT-EPAG--------------GD----------HAEVVA- 62
Query: 149 LNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSEVIYFVEKRLNNSDVAYIASH 202
L AAG + VTM PCN C +I++ V V+Y V + + +A +
Sbjct: 63 LRRAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVA---DPNGIAGGGAG 119
Query: 203 KLLSMAGVKVR 213
+ LS AG++VR
Sbjct: 120 R-LSAAGLQVR 129
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 33/122 (27%)
Query: 72 DDYFMAIA----FLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKS 127
D Y+M IA + + E + P +GA LV Q+ II G G+N S
Sbjct: 6 DSYWMKIALKYAYYAEENGEVP---IGAILVFQEKII-GTGWN----------------S 45
Query: 128 KIGDPLETKYPYVCHAEVNAIL----NTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
I T HAE+ A+ N + LYVT+ PC C II S + +
Sbjct: 46 VISQNDST-----AHAEIIALREAGRNIKNYRLVNTTLYVTLQPCMMCCGAIINSRIKRL 100
Query: 184 IY 185
++
Sbjct: 101 VF 102
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 73 DYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
+Y+M A A+R+ D VGA LV + +I G G+N
Sbjct: 9 EYWMRHALTLAKRAWDEREVPVGAVLVHNNRVI-GEGWN--------------------R 47
Query: 132 PLETKYPYVCHAEVNAI----LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
P+ P HAE+ A+ L + LYVT+ PC CA +I S + V++
Sbjct: 48 PIGRHDP-TAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVF 104
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 73 DYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
+Y+M A A+R+ D VGA LV + +I G G+N
Sbjct: 9 EYWMRHALTLAKRAWDEREVPVGAVLVHNNRVI-GEGWN--------------------R 47
Query: 132 PLETKYPYVCHAEVNAI----LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
P+ P HAE+ A+ L + LYVT+ PC CA +I S + V++
Sbjct: 48 PIGRHDP-TAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVF 104
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 73 DYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
+Y+M A A+R+ D VGA LV + +I G G+N
Sbjct: 9 EYWMRHAMTLAKRAWDEREVPVGAVLVHNNRVI-GEGWN--------------------R 47
Query: 132 PLETKYPYVCHAEVNAI----LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
P+ P HAE+ A+ L + LYVT+ PC CA +I S + V++
Sbjct: 48 PIGRHDP-TAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVF 104
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 73 DYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
+Y+M A A+R+ D VGA LV + +I G G+N
Sbjct: 9 EYWMRHAMTLAKRAWDEREVPVGAVLVHNNRVI-GEGWN--------------------R 47
Query: 132 PLETKYPYVCHAEVNAI----LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
P+ P HAE+ A+ L + LYVT+ PC CA +I S + V++
Sbjct: 48 PIGRHDP-TAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVF 104
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 41/126 (32%)
Query: 70 SWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKI 129
+W + A+ + E+ + P +GA LV ++ II GIG+N S K
Sbjct: 8 NWMKIALKYAYYAKEKGEIP---IGAILVFKERII-GIGWNS-----SISK--------- 49
Query: 130 GDPLETKYPYVCHAEVNAILNTNHASAAGQR----------LYVTMFPCNECAKIIIQSG 179
DP HAE+ A+ AG++ LYVT+ PC C IIQS
Sbjct: 50 NDP-------TAHAEIIAL------RGAGKKIKNYRLLNTTLYVTLQPCIMCCGAIIQSR 96
Query: 180 VSEVIY 185
+ +++
Sbjct: 97 IKRLVF 102
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 73 DYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
+Y+M A A+R+ D VGA LV +I G G+N IG
Sbjct: 9 EYWMRHALTLAKRAWDEREVPVGAVLVHNHRVI-GEGWN----------------RPIG- 50
Query: 132 PLETKYPYVCHAEVNAI----LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
++ HAE+ A+ L + LYVT+ PC CA ++ S + V++
Sbjct: 51 ----RHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVF 104
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 73 DYFMAIAFLSAERSKDPNR-QVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
+Y+M A A+R+ D VGA LV +I G G+N IG
Sbjct: 9 EYWMRHALTLAKRAWDEREVPVGAVLVHNHRVI-GEGWN----------------RPIG- 50
Query: 132 PLETKYPYVCHAEVNAI----LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
++ HAE+ A+ L + LYVT+ PC CA ++ S + V++
Sbjct: 51 ----RHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVF 104
>sp|Q8JFW4|ADAT3_DANRE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Danio rerio GN=adat3 PE=2 SV=2
Length = 336
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 129 IGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
+ D ET PY+C G LYVT PC CA ++ S +S V Y
Sbjct: 253 VCDGKETGLPYIC---------------TGYDLYVTREPCVMCAMALVHSRISRVFY 294
>sp|Q55158|RIBD_SYNY3 Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ribD PE=3 SV=1
Length = 368
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 33/102 (32%)
Query: 89 PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148
PN VG+ +V D I+ G G++ + G P H E+ A+
Sbjct: 24 PNPLVGSVIVQGDEIV-GQGFH----------------PQAGQP---------HGEIFAL 57
Query: 149 LNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSEVI 184
A G LYV + PCN C + IIQ+G+++V+
Sbjct: 58 WEAGD-RAKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVV 98
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 134 ETKYPYVCHAEVNAILNTNHASAA----GQRLYVTMFPCNECAKIIIQSGVSEVIY 185
ET+ + HAE+ I A G LYVT+ PC CA ++ S V +V++
Sbjct: 45 ETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVF 100
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 25/97 (25%)
Query: 93 VGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEV----NAI 148
VGA LV I+G G+N L + DP HAE+ N
Sbjct: 33 VGAVLVDDARNIIGEGWN----------LSIVQ----SDP-------TAHAEIIALRNGA 71
Query: 149 LNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
N + LYVT+ PC CA I+ S + +++
Sbjct: 72 KNIQNYRLLNSTLYVTLEPCTMCAGAILHSRIKRLVF 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,812,154
Number of Sequences: 539616
Number of extensions: 2948331
Number of successful extensions: 7250
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 7191
Number of HSP's gapped (non-prelim): 65
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)