Query 027047
Match_columns 229
No_of_seqs 136 out of 1480
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3127 Deoxycytidylate deamin 100.0 3.2E-45 7E-50 311.4 13.8 218 1-227 1-219 (230)
2 TIGR02571 ComEB ComE operon pr 100.0 3.1E-34 6.6E-39 235.4 17.6 134 68-217 2-140 (151)
3 COG2131 ComEB Deoxycytidylate 100.0 2.8E-34 6.1E-39 236.5 13.4 146 70-221 7-157 (164)
4 PHA02588 cd deoxycytidylate de 100.0 1.1E-32 2.3E-37 229.9 18.2 140 72-217 3-155 (168)
5 cd01286 deoxycytidylate_deamin 100.0 2.1E-31 4.6E-36 213.7 13.9 119 72-191 1-121 (131)
6 PRK10860 tRNA-specific adenosi 100.0 6.3E-30 1.4E-34 214.0 15.8 132 70-226 11-153 (172)
7 COG0590 CumB Cytosine/adenosin 100.0 1.2E-28 2.7E-33 202.4 12.1 115 69-207 5-124 (152)
8 COG0117 RibD Pyrimidine deamin 100.0 9.2E-28 2E-32 193.7 14.2 127 70-226 4-141 (146)
9 cd01284 Riboflavin_deaminase-r 99.9 3.5E-27 7.6E-32 185.5 13.2 106 76-209 1-115 (115)
10 PF00383 dCMP_cyt_deam_1: Cyti 99.9 2.2E-27 4.7E-32 180.6 10.1 98 69-187 1-102 (102)
11 PLN02807 diaminohydroxyphospho 99.9 1.1E-26 2.4E-31 215.5 16.3 127 70-226 30-167 (380)
12 cd01285 nucleoside_deaminase N 99.9 2.5E-26 5.4E-31 178.4 11.0 95 76-191 1-100 (109)
13 PRK10786 ribD bifunctional dia 99.9 5.4E-26 1.2E-30 210.1 15.0 125 72-226 3-138 (367)
14 TIGR00326 eubact_ribD riboflav 99.9 9.7E-25 2.1E-29 199.9 14.6 121 76-226 1-132 (344)
15 cd00786 cytidine_deaminase-lik 99.9 4.8E-24 1E-28 162.1 10.4 91 76-187 1-95 (96)
16 KOG1018 Cytosine deaminase FCY 99.9 4.6E-22 1E-26 165.9 11.5 129 69-218 8-146 (169)
17 cd01283 cytidine_deaminase Cyt 99.6 2.3E-15 4.9E-20 117.0 10.5 91 78-190 3-102 (112)
18 KOG2771 Subunit of tRNA-specif 99.3 5.7E-12 1.2E-16 114.2 6.6 96 70-188 165-303 (344)
19 PF14439 Bd3614-deam: Bd3614-l 99.2 5.5E-11 1.2E-15 93.2 8.2 78 90-190 7-116 (136)
20 TIGR01354 cyt_deam_tetra cytid 99.1 1.4E-09 3E-14 86.9 10.7 83 75-179 3-94 (127)
21 PRK06848 hypothetical protein; 98.8 1.1E-07 2.4E-12 77.3 11.6 89 71-181 6-110 (139)
22 COG0295 Cdd Cytidine deaminase 98.8 8E-08 1.7E-12 77.5 10.2 93 74-188 7-109 (134)
23 PRK14719 bifunctional RNAse/5- 98.6 1.3E-07 2.9E-12 87.7 9.6 74 145-222 35-109 (360)
24 PRK08298 cytidine deaminase; V 98.6 3.2E-07 6.9E-12 74.3 10.2 93 72-186 4-107 (136)
25 PRK12411 cytidine deaminase; P 98.6 9.3E-07 2E-11 71.2 11.8 84 74-179 5-97 (132)
26 PRK05578 cytidine deaminase; V 98.6 9.6E-07 2.1E-11 71.1 11.8 86 71-179 3-97 (131)
27 TIGR01355 cyt_deam_dimer cytid 98.6 4.3E-07 9.3E-12 81.7 10.6 89 70-179 20-112 (283)
28 PLN02402 cytidine deaminase 98.4 1.4E-06 3.1E-11 78.8 9.7 88 69-179 22-115 (303)
29 KOG0833 Cytidine deaminase [Nu 98.4 5.8E-06 1.3E-10 69.1 11.3 96 72-189 21-126 (173)
30 PLN02182 cytidine deaminase 98.2 8.9E-06 1.9E-10 74.6 9.3 88 70-179 43-143 (339)
31 PRK09027 cytidine deaminase; P 98.2 1.6E-05 3.5E-10 72.0 10.6 89 70-179 48-140 (295)
32 PRK09027 cytidine deaminase; P 98.1 2.3E-05 4.9E-10 71.0 10.4 92 72-185 189-291 (295)
33 TIGR01355 cyt_deam_dimer cytid 97.6 0.00053 1.1E-08 61.9 9.5 86 74-181 176-274 (283)
34 PLN02402 cytidine deaminase 96.9 0.0027 5.8E-08 57.8 7.0 57 73-151 193-251 (303)
35 PF14437 MafB19-deam: MafB19-l 96.3 0.046 1E-06 44.8 9.7 49 140-188 80-135 (146)
36 PF08210 APOBEC_N: APOBEC-like 96.1 0.023 4.9E-07 48.4 7.1 78 140-217 51-147 (188)
37 PF14431 YwqJ-deaminase: YwqJ- 95.7 0.037 7.9E-07 44.0 6.5 44 137-180 63-125 (125)
38 PF08211 dCMP_cyt_deam_2: Cyti 95.1 0.05 1.1E-06 43.5 5.4 55 75-151 36-92 (124)
39 PF14440 XOO_2897-deam: Xantho 90.3 0.21 4.5E-06 39.6 2.3 50 140-190 45-102 (118)
40 PF14441 OTT_1508_deam: OTT_15 75.4 5.2 0.00011 32.1 4.4 40 140-179 67-107 (142)
41 PF14424 Toxin-deaminase: The 73.8 6.6 0.00014 31.6 4.6 44 136-179 69-119 (133)
42 PF14427 Pput2613-deam: Pput_2 68.2 16 0.00035 28.8 5.4 49 140-189 48-102 (118)
43 TIGR02990 ectoine_eutA ectoine 59.2 23 0.00049 31.2 5.5 47 166-216 106-152 (239)
44 PF14428 SCP1201-deam: SCP1.20 56.7 9.4 0.0002 30.8 2.4 53 137-189 65-124 (135)
45 smart00552 ADEAMc tRNA-specifi 48.8 14 0.00031 34.7 2.6 17 159-175 118-134 (374)
46 PF08973 TM1506: Domain of unk 47.3 43 0.00093 27.1 4.8 59 144-213 34-92 (134)
47 COG1433 Uncharacterized conser 43.0 64 0.0014 25.6 5.1 37 171-216 57-93 (121)
48 PF04273 DUF442: Putative phos 41.9 1.2E+02 0.0026 23.4 6.5 56 160-215 8-63 (110)
49 PF13540 RCC1_2: Regulator of 39.5 43 0.00092 19.6 2.8 17 94-111 11-27 (30)
50 TIGR00355 purH phosphoribosyla 37.2 1.4E+02 0.0031 29.4 7.5 101 76-213 399-502 (511)
51 KOG1682 Enoyl-CoA isomerase [L 33.4 52 0.0011 29.0 3.5 36 76-111 60-95 (287)
52 PLN02182 cytidine deaminase 32.5 76 0.0017 29.6 4.6 36 73-109 202-239 (339)
53 TIGR03649 ergot_EASG ergot alk 30.8 1.2E+02 0.0026 26.1 5.5 46 173-218 90-136 (285)
54 PF02579 Nitro_FeMo-Co: Dinitr 28.5 1.6E+02 0.0034 20.8 5.0 44 171-223 45-89 (94)
55 PF05507 MAGP: Microfibril-ass 27.6 57 0.0012 26.4 2.5 31 158-188 90-120 (137)
56 PF04805 Pox_E10: E10-like pro 27.4 36 0.00079 24.4 1.3 26 163-188 13-38 (70)
57 cd00562 NifX_NifB This CD repr 27.2 1.8E+02 0.0038 20.9 5.1 45 171-224 53-99 (102)
58 TIGR02940 anfO_nitrog Fe-only 27.1 93 0.002 27.2 4.0 32 95-126 3-34 (214)
59 PF08098 ATX_III: Anemonia sul 26.4 24 0.00052 20.5 0.2 9 164-172 2-10 (27)
60 PF03259 Robl_LC7: Roadblock/L 26.3 72 0.0016 22.4 2.8 17 91-107 14-30 (91)
61 COG3193 GlcG Uncharacterized p 25.5 1.6E+02 0.0034 24.2 4.8 34 73-109 14-47 (141)
62 PRK00881 purH bifunctional pho 25.0 6.9E+02 0.015 24.8 12.8 103 74-213 399-504 (513)
63 cd04679 Nudix_Hydrolase_20 Mem 22.9 75 0.0016 23.9 2.4 23 89-111 1-23 (125)
64 PLN02891 IMP cyclohydrolase 22.0 3.7E+02 0.008 26.8 7.4 100 76-213 436-538 (547)
65 PF13426 PAS_9: PAS domain; PD 21.7 87 0.0019 21.5 2.4 16 92-107 1-16 (104)
66 PRK00724 formate dehydrogenase 20.9 5.9E+02 0.013 22.5 10.6 62 146-215 182-249 (263)
67 CHL00194 ycf39 Ycf39; Provisio 20.8 2.1E+02 0.0046 25.2 5.3 47 171-217 93-144 (317)
68 cd00851 MTH1175 This uncharact 20.7 2.6E+02 0.0056 20.1 4.9 46 171-225 55-101 (103)
69 COG5139 Uncharacterized conser 20.6 1.6E+02 0.0035 27.3 4.3 20 171-190 245-264 (397)
No 1
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.2e-45 Score=311.43 Aligned_cols=218 Identities=54% Similarity=0.852 Sum_probs=191.1
Q ss_pred CCcccchhhhhhHHhhhhhhhhhhhccccCCCCccccccccccccCC-ceeeeeecCCCCCCccccCCCChHHHHHHHHH
Q 027047 1 MNSRELTLVSTAAVLGALASAVAFRFFFSSNPKKLLSRIDSSQSQNG-VVASKVVSSRSPFDPSKRKGYLSWDDYFMAIA 79 (229)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~de~~M~~A 79 (229)
|++|+|++.|+|+.+|++++++++||++ +++.++ .-.+++.+- +++.+++++.++| .+++.+++||++||.+|
T Consensus 1 ~~~~~ll~~~ts~~f~~l~s~~~~r~~s-~~~~~~---~~~~~l~~~i~~i~~~lp~~~~~--~k~~~~lswd~yFM~iA 74 (230)
T KOG3127|consen 1 MPERSLLLESTSAEFGALMSAAAFRFFS-SNPKNP---KLRKFLINNISNILKKLPDLDPF--LKRNGYLSWDDYFMAIA 74 (230)
T ss_pred CchHHHHhhhhhhhhhhhhHHHHHhhhc-cCccch---hhhhhhhhhHHHHhhhchhhccc--cccccCccHHHHHHHHH
Confidence 7899999999999999999999999998 454333 112333343 3588999999999 89999999999999999
Q ss_pred HHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccccCCCCc
Q 027047 80 FLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQ 159 (229)
Q Consensus 80 ~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~~~~~g~ 159 (229)
...|++|+||+++||||||++++.||++|||++|+||+++.+||.+.....+ ++.+|.+++|||+|||.++++..+.++
T Consensus 75 ~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~-~~~k~~yv~HAE~NAi~~~~~~~~~~~ 153 (230)
T KOG3127|consen 75 FLSAKRSKDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTN-LDLKYCYVVHAEENAILNKGRERVGGC 153 (230)
T ss_pred HHHHHhccCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccC-CCcceEEEeehHHHHHHHhCccccCCc
Confidence 9999999999999999999999999999999999999999999999665443 678999999999999999998899999
Q ss_pred EEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEechhHHHHhhhcc
Q 027047 160 RLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE 227 (229)
Q Consensus 160 tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~~~~~~~~~~~ 227 (229)
++|+|+.||..|++.|+++||++|+|+..+.- +.+....+..+|..+||.+.++.+.-..+.+.|+
T Consensus 154 ~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~~--~k~~~~~s~~~l~~agv~~~q~i~~~~~~~i~~~ 219 (230)
T KOG3127|consen 154 SLYVTLCPCNECAKLIIQAGIKEVYYSSSYYV--DKYADRASKRMLDLAGVTLRQFIPPESFIVIEFD 219 (230)
T ss_pred eEEEeecchHHHHHHHHHhhhhheeecccccc--chHHHHHHHHHHHhcCcceEEeccCCcceeeeec
Confidence 99999999999999999999999999998742 2334568999999999999999877677776664
No 2
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=100.00 E-value=3.1e-34 Score=235.42 Aligned_cols=134 Identities=37% Similarity=0.584 Sum_probs=111.0
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCC---CCCCCCcccccccCCCCCCCcCCCCCcHH
Q 027047 68 YLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSDDKLPWAKKSKIGDPLETKYPYVCHAE 144 (229)
Q Consensus 68 ~~~~de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~---~~~~~~~~~~~~~~~~pl~~~~~~~~HAE 144 (229)
+++||++||++|+++|++|+++++||||||| +||+||++|||++|.+ |.+..+. ....+++++.|||
T Consensus 2 ~~~~d~~fM~~A~~~A~rs~~~~~~VGAVIV-~d~~IIs~GyN~~~~g~~~~~~~~~~---------~~~~~~~~~~HAE 71 (151)
T TIGR02571 2 RIKWDQYFMAQSHLLALRSTCTRLSVGATIV-RDKRIIAGGYNGSVAGGVHCIDEGCY---------VVDGHCVRTIHAE 71 (151)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEECCCCCCCCcccccccc---------ccccccCCccCHH
Confidence 4689999999999999999999999999999 5999999999999886 3222210 0122355689999
Q ss_pred HHHHHHcc--ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEech
Q 027047 145 VNAILNTN--HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQP 217 (229)
Q Consensus 145 ~~Ai~~a~--~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~ 217 (229)
+|||.++. +..+.|++||+|+|||.||+++|+++||++|||+..++. + ..+.++|+++||+|+.+..
T Consensus 72 ~nAI~~a~~~~~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~--~----~~~~~~l~~~gi~v~~~~~ 140 (151)
T TIGR02571 72 MNALLQCAKFGVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHN--H----PYAIELFEQAGVELKKVPF 140 (151)
T ss_pred HHHHHHHHhcCCCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCC--c----HHHHHHHHHCCCEEEEeCc
Confidence 99999874 246789999999999999999999999999999976532 1 2578999999999998763
No 3
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.8e-34 Score=236.53 Aligned_cols=146 Identities=45% Similarity=0.683 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCC---CCCCCCcccccccCCCCCCCcCCCCCcHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSDDKLPWAKKSKIGDPLETKYPYVCHAEVN 146 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~---~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~ 146 (229)
+||++||++|...|.+|+|++++||||||+ ||+||++|||+.|+| |.+..+...+.... +...++.+++|||+|
T Consensus 7 ~wdeyfm~~A~l~a~Rstc~r~~VGAvIvk-d~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~--~~~~~~~r~vHAE~N 83 (164)
T COG2131 7 MWDEYFMAIAELVALRSTCPRRQVGAVIVK-DGRIIATGYNGAPSGEDHCIDRGCLRDKVVFV--TTCGHCCRTLHAEQN 83 (164)
T ss_pred HHHHHHHHHHHHHHHHccCcccceeEEEEe-CCeEEEeecCCCCcccCCcCccCceecccccc--cchhHHHHHHHHHHH
Confidence 499999999999999999999999999996 999999999999998 44444433221111 112347789999999
Q ss_pred HHHHcc--ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEechhHHH
Q 027047 147 AILNTN--HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQ 221 (229)
Q Consensus 147 Ai~~a~--~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~~~~~ 221 (229)
||.+++ +..+.|++||||++||.+|++.|+++||++|||..+++..- ....+..+|+++||++.++.+++.+
T Consensus 84 Ail~aa~~g~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~---~~~~s~~l~~~agv~~~~~~~e~~~ 157 (164)
T COG2131 84 AILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTET---VAPYSQELLEEAGVKVRQFPPELAS 157 (164)
T ss_pred HHHHHHhcCCCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcch---hhHHHHHHHHhCCceEEeccccccc
Confidence 999985 34567999999999999999999999999999999986331 2346789999999999987755443
No 4
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=100.00 E-value=1.1e-32 Score=229.91 Aligned_cols=140 Identities=34% Similarity=0.555 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCC---CCCCCC--ccccccc----CCCCCCC--cCCCC
Q 027047 72 DDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSDDKL--PWAKKSK----IGDPLET--KYPYV 140 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~---~~~~~~--~~~~~~~----~~~pl~~--~~~~~ 140 (229)
|++||++|+.+|++|++++.||||||| +||+||++|||++|++ |.+..+ .|..... ...+... ..+++
T Consensus 3 d~~fM~~A~~~A~~s~~~~~~VGAVIV-~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T PHA02588 3 DSTYLQIAYLVSQESKCVSWKVGAVIE-KNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKNE 81 (168)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCCC
Confidence 788999999999999999999999999 6999999999999987 443322 1211110 0011000 13568
Q ss_pred CcHHHHHHHHcc--ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEech
Q 027047 141 CHAEVNAILNTN--HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQP 217 (229)
Q Consensus 141 ~HAE~~Ai~~a~--~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~ 217 (229)
+|||++||.++. +..+.|++||||+|||.||+++|+++||++|||+..++.. ...+.++|+++||+|+.+..
T Consensus 82 ~HAE~nAi~~a~~~~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~-----~~~~~~~L~~~Gi~v~~~~~ 155 (168)
T PHA02588 82 IHAELNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRN-----GPGWDDILRKSGIEVIQIPK 155 (168)
T ss_pred ccHHHHHHHHHhhcCCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCC-----cHHHHHHHHHCCCEEEEeCH
Confidence 999999999985 3468899999999999999999999999999999875322 13579999999999998754
No 5
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.97 E-value=2.1e-31 Score=213.71 Aligned_cols=119 Identities=45% Similarity=0.660 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHc
Q 027047 72 DDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNT 151 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a 151 (229)
|++||++|+++|++|.++++|||||||+ +|+||++|+|++|+++.+....+.+......++..+++.+.|||++||.++
T Consensus 1 d~~~m~~A~~~A~~s~~~~~~VGAViv~-~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a 79 (131)
T cd01286 1 DEYFMAIARLAALRSTCPRRQVGAVIVK-DKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQA 79 (131)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEEE-CCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHH
Confidence 5679999999999999999999999996 799999999999998777666665543333445567788999999999998
Q ss_pred cc--cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCC
Q 027047 152 NH--ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRL 191 (229)
Q Consensus 152 ~~--~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~ 191 (229)
.+ ..+.|++||||+|||.||+.+|+++||++|||+.+++.
T Consensus 80 ~~~~~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~ 121 (131)
T cd01286 80 ARHGVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDD 121 (131)
T ss_pred hHcCCCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCc
Confidence 54 56789999999999999999999999999999998854
No 6
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.97 E-value=6.3e-30 Score=213.99 Aligned_cols=132 Identities=26% Similarity=0.390 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHhhcCC-CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKD-PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~-~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
.+|++||++|+++|+++.+ ++.|||||||+ +|+||+.|+|++. ..+|| +.|||++||
T Consensus 11 ~~~~~~m~~A~~~A~~a~~~g~~pvGAVIV~-~g~IIa~g~N~~~--------------~~~d~-------~~HAEi~Ai 68 (172)
T PRK10860 11 FSHEYWMRHALTLAKRAWDEREVPVGAVLVH-NNRVIGEGWNRPI--------------GRHDP-------TAHAEIMAL 68 (172)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCCEEEEEEe-CCEEEEEeeCCCC--------------CCCCC-------ccCHHHHHH
Confidence 4688999999999999976 57999999996 8999999999852 33455 789999999
Q ss_pred HHccc----cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCC----CeEEE--echh
Q 027047 149 LNTNH----ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAG----VKVRK--HQPQ 218 (229)
Q Consensus 149 ~~a~~----~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~G----V~v~~--~~~~ 218 (229)
+++.+ ..+.|++||+|+|||+||+++|+|+||++|||+..++...- .+.++++|+..| ++|.. +..+
T Consensus 69 ~~a~~~~~~~~l~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~---~g~~~~~l~~~~~~~~i~v~~gv~~~e 145 (172)
T PRK10860 69 RQGGLVLQNYRLLDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGA---AGSLMDVLHHPGMNHRVEITEGVLADE 145 (172)
T ss_pred HHHHHhcCCCCcCCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCC---CCcHHHHhhcccCCCCCEEEeCccHHH
Confidence 98843 45789999999999999999999999999999999864321 245678898877 56643 4456
Q ss_pred HHHHhhhc
Q 027047 219 MRQILITF 226 (229)
Q Consensus 219 ~~~~~~~~ 226 (229)
+.+++-+|
T Consensus 146 ~~~ll~~f 153 (172)
T PRK10860 146 CAALLSDF 153 (172)
T ss_pred HHHHHHHH
Confidence 66666555
No 7
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-28 Score=202.41 Aligned_cols=115 Identities=31% Similarity=0.397 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHHHHhhcCC-CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 69 LSWDDYFMAIAFLSAERSKD-PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S~~-~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
..+|+.||+.|+.+|+++.. ++.|||||||+.+|+||+.|+|.. ...+|| +.|||++|
T Consensus 5 ~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~--------------~~~~dp-------taHAEi~a 63 (152)
T COG0590 5 SEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRR--------------EEDNDP-------TAHAEILA 63 (152)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCcc--------------ccCCCc-------cccHHHHH
Confidence 46789999999999999875 579999999988999999999984 466777 78999999
Q ss_pred HHHcc----ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHH
Q 027047 148 ILNTN----HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSM 207 (229)
Q Consensus 148 i~~a~----~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~ 207 (229)
|+.+. .+.+.|+|||+|+|||+||+++|+|+||++|||+.+++... ..+...+++++
T Consensus 64 ir~a~~~~~~~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~g---a~g~~~~i~~~ 124 (152)
T COG0590 64 IRAAAETLGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTG---AIGSLLDILKD 124 (152)
T ss_pred HHHHHHhhCCCCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcC---ccCcccccccC
Confidence 99984 35689999999999999999999999999999999987543 23445667766
No 8
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.95 E-value=9.2e-28 Score=193.70 Aligned_cols=127 Identities=33% Similarity=0.537 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHhhcC---CCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHH
Q 027047 70 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVN 146 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~---~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~ 146 (229)
..|+.||++|+++|++.. .||++||||||+ ||+||+.||.. +.|+| |||+.
T Consensus 4 ~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~-~~~Ivg~G~h~----------------~aG~p---------HAEv~ 57 (146)
T COG0117 4 ELDERYMERALELAEKGQGTTSPNPSVGCVIVK-DGEIVGEGYHE----------------KAGGP---------HAEVC 57 (146)
T ss_pred hHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEE-CCEEEeeeecC----------------CCCCC---------cHHHH
Confidence 569999999999999954 589999999995 88999999997 57788 99999
Q ss_pred HHHHccccCCCCcEEEEeCCCcHH------HHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEe--chh
Q 027047 147 AILNTNHASAAGQRLYVTMFPCNE------CAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKH--QPQ 218 (229)
Q Consensus 147 Ai~~a~~~~~~g~tLYvT~ePC~~------Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~--~~~ 218 (229)
||..++ ....|+|+|||+|||.+ |+.+|+.+||+|||++..||++ ...+.|+.+|+++||+|+.- ..+
T Consensus 58 Al~~ag-~~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp---~Vag~G~~~L~~aGi~V~~gil~~e 133 (146)
T COG0117 58 ALRMAG-EAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNP---LVAGGGLARLRAAGIEVEVGILEEE 133 (146)
T ss_pred HHHHcC-cccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCc---cccCchHHHHHHcCCeEEEehhHHH
Confidence 999994 68899999999999999 9999999999999999998632 23478999999999887643 334
Q ss_pred HHHHhhhc
Q 027047 219 MRQILITF 226 (229)
Q Consensus 219 ~~~~~~~~ 226 (229)
.+++...|
T Consensus 134 ~~~l~~~f 141 (146)
T COG0117 134 AEKLNEGF 141 (146)
T ss_pred HHHHHHHH
Confidence 44443333
No 9
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.95 E-value=3.5e-27 Score=185.53 Aligned_cols=106 Identities=36% Similarity=0.493 Sum_probs=92.4
Q ss_pred HHHHHHHHhhc--C-CCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHcc
Q 027047 76 MAIAFLSAERS--K-DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTN 152 (229)
Q Consensus 76 M~~A~~~A~~S--~-~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~ 152 (229)
|++|+++|+++ . .++.|||||||++||+||+.|+|..+ + +.|||++||.++.
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~------------------~-------~~HAE~~ai~~a~ 55 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKA------------------G-------GPHAEVNALASAG 55 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCC------------------C-------cccHHHHHHHHHh
Confidence 78999999998 3 47899999999878999999999841 2 5699999999997
Q ss_pred ccCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCC
Q 027047 153 HASAAGQRLYVTMFPC------NECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAG 209 (229)
Q Consensus 153 ~~~~~g~tLYvT~ePC------~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~G 209 (229)
+..+.|++||+|+||| +||+.+|+|+||++|||+..++... ....++++|+++|
T Consensus 56 ~~~l~g~tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~---~~~~g~~~l~~~g 115 (115)
T cd01284 56 EKLARGATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPL---VAGKGAERLRAAG 115 (115)
T ss_pred hcCCCCeEEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcc---cccHHHHHHHHCc
Confidence 6578999999999999 7999999999999999999986432 2357899999987
No 10
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.95 E-value=2.2e-27 Score=180.57 Aligned_cols=98 Identities=44% Similarity=0.709 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHHHHhhc-CCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 69 LSWDDYFMAIAFLSAERS-KDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S-~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
++||+.||++|+++|+++ .+++.+||||||+++|++|+.|+|..+ ...++ +.|||++|
T Consensus 1 m~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~--------------~~~~~-------~~HAE~~A 59 (102)
T PF00383_consen 1 MEWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEP--------------PGKNP-------TIHAEMNA 59 (102)
T ss_dssp -CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHH--------------STTGG-------TB-HHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeee--------------eeccc-------cccchhhh
Confidence 479999999999999999 678999999999989999999999852 22333 68999999
Q ss_pred HHHcccc---CCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEe
Q 027047 148 ILNTNHA---SAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFV 187 (229)
Q Consensus 148 i~~a~~~---~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~ 187 (229)
|.++... .+.|++||+|+|||.||+++|+++||+||||+.
T Consensus 60 i~~~~~~~~~~~~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 60 IRKAARNGGSSLKGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp HHHHHHTTSSGETTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred hhhhhhhccccccCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 9998543 467899999999999999999999999999984
No 11
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.94 E-value=1.1e-26 Score=215.45 Aligned_cols=127 Identities=28% Similarity=0.438 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHhhcC---CCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHH
Q 027047 70 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVN 146 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~---~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~ 146 (229)
.||++||++|+++|+++. +++++||||||+ ||+||+.|||.. .+++ |||++
T Consensus 30 ~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~-~g~Ii~~g~n~~----------------~g~~---------HAEi~ 83 (380)
T PLN02807 30 DDDSFYMRRCVELARKAIGCTSPNPMVGCVIVK-DGRIVGEGFHPK----------------AGQP---------HAEVF 83 (380)
T ss_pred chHHHHHHHHHHHHHhhcccCCCCCCEEEEEEE-CCEEEEEEeCCC----------------CCCc---------CHHHH
Confidence 789999999999999984 468899999995 899999999973 3445 99999
Q ss_pred HHHHccccCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEE--echh
Q 027047 147 AILNTNHASAAGQRLYVTMFPC------NECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK--HQPQ 218 (229)
Q Consensus 147 Ai~~a~~~~~~g~tLYvT~ePC------~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~--~~~~ 218 (229)
||.+|+. .+.|+|||||+||| +||+.+|+++||++|||+..+|.+. . .+.+.++|+.+||+|.. ...+
T Consensus 84 Ai~~a~~-~~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~--~-~g~g~~~l~~~gi~V~~g~~~~e 159 (380)
T PLN02807 84 ALRDAGD-LAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPI--V-ASKGIERLRDAGIEVTVGVEEEL 159 (380)
T ss_pred HHHHhhh-hcCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCcc--c-cchHHHHHHhCCCEEEeCcCHHH
Confidence 9999864 57899999999999 7999999999999999999876432 2 35789999999999975 2445
Q ss_pred HHHHhhhc
Q 027047 219 MRQILITF 226 (229)
Q Consensus 219 ~~~~~~~~ 226 (229)
+.++...|
T Consensus 160 ~~~l~~~f 167 (380)
T PLN02807 160 CRKLNEAF 167 (380)
T ss_pred HHHHHHHH
Confidence 56655544
No 12
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.94 E-value=2.5e-26 Score=178.37 Aligned_cols=95 Identities=31% Similarity=0.480 Sum_probs=83.1
Q ss_pred HHHHHHHHhhcCC-CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccc-
Q 027047 76 MAIAFLSAERSKD-PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNH- 153 (229)
Q Consensus 76 M~~A~~~A~~S~~-~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~- 153 (229)
|++|+++|+++.. ++.||||+||++||+||+.|+|..+ +.+++ +.|||++||.++.+
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~--------------~~~~~-------~~HAE~~ai~~~~~~ 59 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVE--------------QDGDP-------TAHAEIVAIRNAARR 59 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCC--------------CCCCC-------cccHHHHHHHHHHHH
Confidence 6789999998864 6899999999988999999999863 33455 68999999999853
Q ss_pred ---cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCC
Q 027047 154 ---ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRL 191 (229)
Q Consensus 154 ---~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~ 191 (229)
..+.|++||+|+|||.||+++|+|+||++|||+.+++.
T Consensus 60 ~~~~~~~~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~ 100 (109)
T cd01285 60 LGSYLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPK 100 (109)
T ss_pred hCCCccCCeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCc
Confidence 25789999999999999999999999999999998864
No 13
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.94 E-value=5.4e-26 Score=210.12 Aligned_cols=125 Identities=34% Similarity=0.553 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhhc---CCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 72 DDYFMAIAFLSAERS---KDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 72 de~~M~~A~~~A~~S---~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
|++||++|+++|+++ .++++|||||||+ ||+||+.|||.. .+++ |||++||
T Consensus 3 d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----------------~g~~---------HAE~~ai 56 (367)
T PRK10786 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVK-DGEIVGEGYHQR----------------AGEP---------HAEVHAL 56 (367)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCEEEEEEe-CCEEEEEEeCCC----------------CCCC---------CHHHHHH
Confidence 788999999999998 4679999999995 899999999973 3444 9999999
Q ss_pred HHccccCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEE--echhHH
Q 027047 149 LNTNHASAAGQRLYVTMFPC------NECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK--HQPQMR 220 (229)
Q Consensus 149 ~~a~~~~~~g~tLYvT~ePC------~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~--~~~~~~ 220 (229)
.++++ .+.|+|||||+||| +||+.+|+++||++|||+..+|... . .+.+.++|+++||+|.. +..+..
T Consensus 57 ~~a~~-~~~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~--~-~g~~~~~l~~~gi~v~~~~~~~e~~ 132 (367)
T PRK10786 57 RMAGE-KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQ--V-AGRGLYRLQQAGIDVSHGLMMSEAE 132 (367)
T ss_pred HHHhh-hcCCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcc--c-CchHHHHHhcCCcEEEcCCcHHHHH
Confidence 99964 57899999999999 7999999999999999999886432 1 24578999999999974 345555
Q ss_pred HHhhhc
Q 027047 221 QILITF 226 (229)
Q Consensus 221 ~~~~~~ 226 (229)
+++-.|
T Consensus 133 ~l~~~f 138 (367)
T PRK10786 133 ALNKGF 138 (367)
T ss_pred HHHHHH
Confidence 555544
No 14
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.92 E-value=9.7e-25 Score=199.85 Aligned_cols=121 Identities=30% Similarity=0.439 Sum_probs=100.9
Q ss_pred HHHHHHHHhhcC---CCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHcc
Q 027047 76 MAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTN 152 (229)
Q Consensus 76 M~~A~~~A~~S~---~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~ 152 (229)
|++|+++|+++. ++++|||||||+ ||+||+.|+|+. .+ +.|||++||.+|.
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~-~~~ii~~g~n~~----------------~~---------~~HAE~~ai~~a~ 54 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVK-NGEIVGEGAHQK----------------AG---------EPHAEVHALRQAG 54 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEe-CCEEEEEeeCCC----------------CC---------CCCHHHHHHHHhc
Confidence 889999999974 478999999997 999999999983 22 3599999999996
Q ss_pred ccCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEE--echhHHHHhh
Q 027047 153 HASAAGQRLYVTMFPC------NECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK--HQPQMRQILI 224 (229)
Q Consensus 153 ~~~~~g~tLYvT~ePC------~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~--~~~~~~~~~~ 224 (229)
+ ...|+|||||+||| +||+.+|+++||+||||+..+|.+.. .+.+.++|++.||+|+. +..++.+++.
T Consensus 55 ~-~~~g~tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~---~~~~~~~l~~~gi~v~~~~~~~e~~~l~~ 130 (344)
T TIGR00326 55 E-NAKGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLV---AGRGAERLKQAGIEVTFGILKEEAERLNK 130 (344)
T ss_pred c-ccCCcEEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccc---cchHHHHHhcCCcEEEeCCCHHHHHHHHH
Confidence 4 56899999999999 69999999999999999998864321 25678999999999974 2455666665
Q ss_pred hc
Q 027047 225 TF 226 (229)
Q Consensus 225 ~~ 226 (229)
.|
T Consensus 131 ~f 132 (344)
T TIGR00326 131 GF 132 (344)
T ss_pred HH
Confidence 55
No 15
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.91 E-value=4.8e-24 Score=162.11 Aligned_cols=91 Identities=40% Similarity=0.612 Sum_probs=77.6
Q ss_pred HHHHHHHHhhc--CCCCCceEEEEEec-CCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHcc
Q 027047 76 MAIAFLSAERS--KDPNRQVGACLVSQ-DGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTN 152 (229)
Q Consensus 76 M~~A~~~A~~S--~~~~~~VGAvIV~~-dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~ 152 (229)
|+.|+++|+++ ..++.||||+||+. ||++|+.|+|... ..+++ +.|||++||.++.
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~--------------~~~~~-------~~HAE~~ai~~a~ 59 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIEN--------------AAYSM-------CNHAERTALFNAG 59 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccC--------------CCCCC-------eeCHHHHHHHHHH
Confidence 77888999987 45799999999985 6999999999841 22333 8899999999985
Q ss_pred cc-CCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEe
Q 027047 153 HA-SAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFV 187 (229)
Q Consensus 153 ~~-~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~ 187 (229)
+. .+.+++||+|+|||.||+++|+++||++|||+.
T Consensus 60 ~~~~~~~~tly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 60 SEGDTKGQMLYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred HcCCCCceEEEEECCChHHHHHHHHHhCCCCEEEee
Confidence 32 378999999999999999999999999999985
No 16
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.87 E-value=4.6e-22 Score=165.91 Aligned_cols=129 Identities=31% Similarity=0.372 Sum_probs=102.4
Q ss_pred ChHHHHHHHHHHHHHhhcCC-C-CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHH
Q 027047 69 LSWDDYFMAIAFLSAERSKD-P-NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVN 146 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S~~-~-~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~ 146 (229)
..+|..||..|+++|.++.+ + +.|||||+|+.||+|++.|+|.+ ...+|+ |.|||+.
T Consensus 8 ~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~--------------~~~~d~-------t~HaE~~ 66 (169)
T KOG1018|consen 8 SDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMV--------------NEKKDP-------TAHAEVI 66 (169)
T ss_pred ccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEeccccee--------------cccCCc-------chhhHHH
Confidence 46789999999999999975 7 89999999988999999999985 355666 8899999
Q ss_pred HHHH---c----cccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCch-hhhhHHHHHHHHCCCeEEEechh
Q 027047 147 AILN---T----NHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSD-VAYIASHKLLSMAGVKVRKHQPQ 218 (229)
Q Consensus 147 Ai~~---a----~~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~-~~~~~~~~~L~~~GV~v~~~~~~ 218 (229)
+|.. . ....+++++||||.|||+||+++|.++||++|||+..-+..... +....-...|+..|.++......
T Consensus 67 ~I~~~~~~~~~~~~~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 146 (169)
T KOG1018|consen 67 AIREEEVMCKSLRTIDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGI 146 (169)
T ss_pred HHhhHHHHhhhcCceeccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccch
Confidence 9998 2 23568899999999999999999999999999999985432211 11112345566678887665544
No 17
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.63 E-value=2.3e-15 Score=117.04 Aligned_cols=91 Identities=25% Similarity=0.295 Sum_probs=73.3
Q ss_pred HHHHHHhhcCC--CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHcccc-
Q 027047 78 IAFLSAERSKD--PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHA- 154 (229)
Q Consensus 78 ~A~~~A~~S~~--~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~~- 154 (229)
.|++.+.++.. .+.||||+|++.+|+|+ .|+|.. ... ++.+.|||+.||.++...
T Consensus 3 ~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e--------------~~~-------~~~~~hAE~~ai~~~~~~~ 60 (112)
T cd01283 3 AALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVE--------------NAS-------YGLTLCAERTAIGKAVSEG 60 (112)
T ss_pred HHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEee--------------cCC-------CCCCcCHHHHHHHHHHHcC
Confidence 45666666643 57999999998889998 899973 112 333789999999998432
Q ss_pred -CCCCcEEEEe-----CCCcHHHHHHHHHhCCCEEEEEeecC
Q 027047 155 -SAAGQRLYVT-----MFPCNECAKIIIQSGVSEVIYFVEKR 190 (229)
Q Consensus 155 -~~~g~tLYvT-----~ePC~~Ca~ai~~sGI~rVvy~~~~~ 190 (229)
...+.++|+| .+||.||+.+|.+.++++|+|...++
T Consensus 61 ~~~~~~~i~vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~ 102 (112)
T cd01283 61 LRRYLVTWAVSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNP 102 (112)
T ss_pred CCceEEEEEEECCCCccCCCHHHHHHHHHhCCCCeEEEEEcC
Confidence 3468999999 99999999999999999999999764
No 18
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=99.28 E-value=5.7e-12 Score=114.21 Aligned_cols=96 Identities=18% Similarity=0.286 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCe-EEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGI-ILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~-II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
..+..+|+.++.+|..+... +++|++|+++-+. ||+.|...+ |. .+| ..|+-|+++
T Consensus 165 ~~~~ri~e~~I~~a~~~~~~-~~~~a~I~~p~~~~Via~~~~~~---~~------------~~P-------~eh~~mv~v 221 (344)
T KOG2771|consen 165 GEIARIGELLIAMATDGHAS-RPVSAAIVDPVMDRVIAAGTGEV---CA------------YNP-------IEHCVMVLV 221 (344)
T ss_pred HHHHHHHHHHHHHHhhhccc-cCccceecCCccceEEecCCCcc---cc------------cCc-------HHHHHHHHH
Confidence 34677999999999987764 9999999998774 666665542 11 144 457777776
Q ss_pred HHc-----cc-------------------------------------cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEE
Q 027047 149 LNT-----NH-------------------------------------ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYF 186 (229)
Q Consensus 149 ~~a-----~~-------------------------------------~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~ 186 (229)
... .+ +.+.|+++|+|+|||.||+|+|+|++|+||||.
T Consensus 222 ~~v~rrq~~~~~~~~~~~~~~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~ 301 (344)
T KOG2771|consen 222 HFVARRQEEGTWDLHPIPLLIFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYC 301 (344)
T ss_pred HHHHHHHhccccccccccccccccccchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeec
Confidence 532 11 457789999999999999999999999999999
Q ss_pred ee
Q 027047 187 VE 188 (229)
Q Consensus 187 ~~ 188 (229)
.+
T Consensus 302 ~~ 303 (344)
T KOG2771|consen 302 KP 303 (344)
T ss_pred cC
Confidence 87
No 19
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=99.21 E-value=5.5e-11 Score=93.16 Aligned_cols=78 Identities=31% Similarity=0.486 Sum_probs=65.5
Q ss_pred CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHc------------------
Q 027047 90 NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNT------------------ 151 (229)
Q Consensus 90 ~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a------------------ 151 (229)
.+.|-|.||+++|.++..+.|. ..+|. ++|||+|.+...
T Consensus 7 DR~VvA~lv~~~G~l~daa~Nt----------------Na~N~-------~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~ 63 (136)
T PF14439_consen 7 DRRVVAALVSPDGELVDAAVNT----------------NADNK-------MLHAEWNLLMPWLWREWVDSPTDDDEIGNR 63 (136)
T ss_pred ccceeEEEECCCCcEEEeeecc----------------CCccc-------eeehhhhhhhHHHHhhcccCCCcccccccC
Confidence 4788899999999999999996 34454 789999999643
Q ss_pred -------cccCCCCcEEEEeCCCcHHHHHHHHHhCC-------CEEEEEeecC
Q 027047 152 -------NHASAAGQRLYVTMFPCNECAKIIIQSGV-------SEVIYFVEKR 190 (229)
Q Consensus 152 -------~~~~~~g~tLYvT~ePC~~Ca~ai~~sGI-------~rVvy~~~~~ 190 (229)
.+....|+.||+|+.||.||+.++.+.+. .+|||+.++|
T Consensus 64 ~g~g~~~~~~l~~ga~l~vTlqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~ 116 (136)
T PF14439_consen 64 PGDGPEERRPLPPGARLLVTLQCCKMCAALVCAASDRPGRRVPIDVVYLNEDP 116 (136)
T ss_pred CCcchhhcCcCCCCcEEEEechhHHHHHHHHHHHhhCcCCccceEEEEecCCC
Confidence 12345789999999999999999999876 8899999875
No 20
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=99.07 E-value=1.4e-09 Score=86.88 Aligned_cols=83 Identities=27% Similarity=0.382 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHcc
Q 027047 75 FMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTN 152 (229)
Q Consensus 75 ~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~ 152 (229)
....|.++++++..| +.||||+|++.||+|+. |+|.. ... ++.++|||+.||.++.
T Consensus 3 l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e--------------~~~-------~~~s~~AE~~Ai~~a~ 60 (127)
T TIGR01354 3 LFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVE--------------NAS-------YPLTICAERSAIGKAI 60 (127)
T ss_pred HHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeec--------------ccC-------CCCCcCHHHHHHHHHH
Confidence 568899999999986 58999999999999886 99973 122 3448999999999873
Q ss_pred cc---CCCCcEEEE----eCCCcHHHHHHHHHhC
Q 027047 153 HA---SAAGQRLYV----TMFPCNECAKIIIQSG 179 (229)
Q Consensus 153 ~~---~~~g~tLYv----T~ePC~~Ca~ai~~sG 179 (229)
.. .+....++. ...||.||...|.+.+
T Consensus 61 ~~g~~~i~~i~vv~~~~~~~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 61 SAGYRKFVAIAVADSADDPVSPCGACRQVLAEFA 94 (127)
T ss_pred HcCCCCeEEEEEEeCCCCCcCccHHHHHHHHHhC
Confidence 22 222233332 4789999999999987
No 21
>PRK06848 hypothetical protein; Validated
Probab=98.77 E-value=1.1e-07 Score=77.27 Aligned_cols=89 Identities=21% Similarity=0.169 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhcCCC-CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 71 WDDYFMAIAFLSAERSKDP-NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 71 ~de~~M~~A~~~A~~S~~~-~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
.++..++.|.++++.+..| +.+|||+|..+||+|+ +|.|-. ..-|..++|||..||.
T Consensus 6 ~~~~L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvE---------------------nas~~~tiCAEr~Ai~ 63 (139)
T PRK06848 6 EDYELIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLE---------------------AYVGRITVCAEAIAIG 63 (139)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEee---------------------cCCCCcccCHHHHHHH
Confidence 3456899999999998876 6999999999999987 999962 1123448899999999
Q ss_pred HccccCCC--CcEEEEe-------------CCCcHHHHHHHHHhCCC
Q 027047 150 NTNHASAA--GQRLYVT-------------MFPCNECAKIIIQSGVS 181 (229)
Q Consensus 150 ~a~~~~~~--g~tLYvT-------------~ePC~~Ca~ai~~sGI~ 181 (229)
++-..... .+.+-++ ..||-+|.+.|.+.+-.
T Consensus 64 ~av~~g~~~i~~i~~v~~~~~~~~~~~~~~~~PCG~CRQvl~E~~~~ 110 (139)
T PRK06848 64 KAISEGDHEIDTIVAVRHPKPHEDDREIWVVSPCGACRELISDYGKN 110 (139)
T ss_pred HHHHcCCCceEEEEEEecCcccccccCCCccCCChhhHHHHHHhCCC
Confidence 87321111 2232232 46999999999998633
No 22
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=98.76 E-value=8e-08 Score=77.49 Aligned_cols=93 Identities=25% Similarity=0.370 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHc
Q 027047 74 YFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNT 151 (229)
Q Consensus 74 ~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a 151 (229)
..+..|.+.+..|..| +.+|||+|..+||+|+ +|.|- +...|+.++|||..||.++
T Consensus 7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~Ni---------------------Enasy~~t~CAErsAI~~a 64 (134)
T COG0295 7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIY-TGANV---------------------ENASYGLTVCAERSAIFKA 64 (134)
T ss_pred HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEE-EEEee---------------------ecccccchhhHHHHHHHHH
Confidence 4677778888888876 7999999999999876 99996 2345777999999999987
Q ss_pred cccCCCC-cEEEEe------CCCcHHHHHHHHHhC-CCEEEEEee
Q 027047 152 NHASAAG-QRLYVT------MFPCNECAKIIIQSG-VSEVIYFVE 188 (229)
Q Consensus 152 ~~~~~~g-~tLYvT------~ePC~~Ca~ai~~sG-I~rVvy~~~ 188 (229)
-...... ..+++. ..||-+|.+.|.+.. -...+|..+
T Consensus 65 is~G~~~~~~v~v~~~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~~~ 109 (134)
T COG0295 65 ISEGKRKFDAVVVVADTGKPVSPCGACRQVLAEFCGDDTLIILLP 109 (134)
T ss_pred HHcCCCcEEEEEEEcCCCCCcCCcHHHHHHHHHhcCCCceEEEec
Confidence 2111111 223332 679999999999964 444444443
No 23
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.65 E-value=1.3e-07 Score=87.69 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=55.8
Q ss_pred HHHHHHccccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEe-chhHHHH
Q 027047 145 VNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKH-QPQMRQI 222 (229)
Q Consensus 145 ~~Ai~~a~~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~-~~~~~~~ 222 (229)
..||.+. ...|.++|+|.+||.+|+.+|+.+||+|||++. ||++........++++|+.+||+|... ..+++++
T Consensus 35 ~~~l~~l---gi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~~aGi~V~~~l~~e~~~l 109 (360)
T PRK14719 35 ILSLKNL---KINANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKY 109 (360)
T ss_pred HHHHHHc---CCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHHHCCCEEEeehHHHHHHH
Confidence 4677765 467999999999999999999999999999999 765422111224599999999999533 3344444
No 24
>PRK08298 cytidine deaminase; Validated
Probab=98.63 E-value=3.2e-07 Score=74.34 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHc
Q 027047 72 DDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNT 151 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a 151 (229)
++..++.|.++.++++.|-.+|||+|...||+|+ +|.|-- ..-|..+++||.+||-.+
T Consensus 4 ~~~L~~~A~~a~~~aY~PYS~VgAAllt~dG~i~-tG~NvE---------------------nas~~~t~CAEr~Ai~~a 61 (136)
T PRK08298 4 EQALYDVAKQLIEQRYPNGWGGAAAMRVEDGTIL-TSVAPE---------------------VINASTELCMETGAICEA 61 (136)
T ss_pred HHHHHHHHHHHHHhccCCCCceeEEEEeCCCCEE-EEEeec---------------------CCCCCcchhHHHHHHHHH
Confidence 3457999999999999875599999999999987 999962 222445889999999887
Q ss_pred c--ccCCCCcEEEE---------eCCCcHHHHHHHHHhCCCEEEEE
Q 027047 152 N--HASAAGQRLYV---------TMFPCNECAKIIIQSGVSEVIYF 186 (229)
Q Consensus 152 ~--~~~~~g~tLYv---------T~ePC~~Ca~ai~~sGI~rVvy~ 186 (229)
- +...-...+.+ -..||-+|.+.|.+.+-.-.|+.
T Consensus 62 v~~G~~~~~~i~v~~~~~~~~~~~~sPCG~CRQvl~Ef~~~~~v~~ 107 (136)
T PRK08298 62 HKLQKRVTHSICVARENEHSELKVLSPCGVCQERLFYWGPDVMCAV 107 (136)
T ss_pred HHCCCceEEEEEEEcCCCcCCCcccCCChhHHHHHHHhCCCCEEEE
Confidence 2 22111222222 13699999999999964433333
No 25
>PRK12411 cytidine deaminase; Provisional
Probab=98.59 E-value=9.3e-07 Score=71.24 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHc
Q 027047 74 YFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNT 151 (229)
Q Consensus 74 ~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a 151 (229)
.....|.++++++..| +.+|||++...||+|+ +|.|-. ..-|..++|||..||.++
T Consensus 5 ~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvE---------------------n~s~~~s~CAE~~Ai~~a 62 (132)
T PRK12411 5 QLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVE---------------------NASYGLCNCAERTALFKA 62 (132)
T ss_pred HHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEee---------------------cCCCCcCcCHHHHHHHHH
Confidence 4678999999999887 5899999999999987 999951 122445899999999887
Q ss_pred c--ccCCCCcEEEEe-----CCCcHHHHHHHHHhC
Q 027047 152 N--HASAAGQRLYVT-----MFPCNECAKIIIQSG 179 (229)
Q Consensus 152 ~--~~~~~g~tLYvT-----~ePC~~Ca~ai~~sG 179 (229)
- +...-.+.+.++ ..||-+|.+.|.+..
T Consensus 63 v~~g~~~i~~i~v~~~~~~~~sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 63 VSEGDKEFVAIAIVADTKRPVPPCGACRQVMVELC 97 (132)
T ss_pred HHCCCCceEEEEEEeCCCCCcCCchhHHHHHHHhC
Confidence 2 211112222223 469999999999963
No 26
>PRK05578 cytidine deaminase; Validated
Probab=98.59 E-value=9.6e-07 Score=71.06 Aligned_cols=86 Identities=26% Similarity=0.492 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 71 WDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 71 ~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
|++ .++.|..+.+++..| +.+|||+|.+.||+|. +|.|-. ..-|+.++|||..||
T Consensus 3 ~~~-L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvE---------------------na~~~~~~CAE~~Ai 59 (131)
T PRK05578 3 WKE-LIEAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIE---------------------NASYGLTNCAERTAI 59 (131)
T ss_pred HHH-HHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEee---------------------CccccCCcCHHHHHH
Confidence 454 679999999999886 5899999999999986 999951 122445899999999
Q ss_pred HHccccCCCC-cEEEE------eCCCcHHHHHHHHHhC
Q 027047 149 LNTNHASAAG-QRLYV------TMFPCNECAKIIIQSG 179 (229)
Q Consensus 149 ~~a~~~~~~g-~tLYv------T~ePC~~Ca~ai~~sG 179 (229)
.++-.....+ ..+.+ ...||-+|.+.|.+..
T Consensus 60 ~~av~~G~~~i~~i~vv~~~~~~~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 60 FKAISEGGGRLVAIACVGETGEPLSPCGRCRQVLAEFG 97 (131)
T ss_pred HHHHHcCCCceEEEEEEecCCCccCccHHHHHHHHHhC
Confidence 8872111111 22222 2579999999999875
No 27
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.58 E-value=4.3e-07 Score=81.66 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
+.++..+..|.+.++++.+| +.+|||++..+||+|+ +|.|-. ..+ .-|..++|||..|
T Consensus 20 ~~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE---------------~~n----as~~~tiCAEr~A 79 (283)
T TIGR01355 20 TDPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVE---------------FPG----LPLHHSIHAEQFL 79 (283)
T ss_pred ChHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEec---------------cCC----CCCCccccHHHHH
Confidence 34667899999999999987 7999999999999987 999951 011 1245589999999
Q ss_pred HHHcc--ccCCCCcEEEEeCCCcHHHHHHHHHhC
Q 027047 148 ILNTN--HASAAGQRLYVTMFPCNECAKIIIQSG 179 (229)
Q Consensus 148 i~~a~--~~~~~g~tLYvT~ePC~~Ca~ai~~sG 179 (229)
|.++- +.. .=..+.++..||-+|.+.|.+..
T Consensus 80 i~~Av~~Ge~-~i~~Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 80 ISHLALNNER-GLNDLAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred HHHHHHcCCC-ceEEEEEEeCCcchhHHHHHHhc
Confidence 98872 221 22456677899999999999973
No 28
>PLN02402 cytidine deaminase
Probab=98.42 E-value=1.4e-06 Score=78.83 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCC--CCcHH
Q 027047 69 LSWDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPY--VCHAE 144 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~--~~HAE 144 (229)
.+.++..+.++..+.+.++.| +.+|||++...||+|. +|.|-. ..-|+. ++|||
T Consensus 22 ~~~~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVE---------------------nasy~l~~tiCAE 79 (303)
T PLN02402 22 LTVLQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLE---------------------FPGLPLHHSVHAE 79 (303)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeee---------------------cCCCCCCCcccHH
Confidence 345777888888888888887 6999999999999976 999951 112333 78999
Q ss_pred HHHHHHc--cccCCCCcEEEEeCCCcHHHHHHHHHhC
Q 027047 145 VNAILNT--NHASAAGQRLYVTMFPCNECAKIIIQSG 179 (229)
Q Consensus 145 ~~Ai~~a--~~~~~~g~tLYvT~ePC~~Ca~ai~~sG 179 (229)
..||.++ .+... =..+.|+..||-+|.+.|.+..
T Consensus 80 r~Ai~~av~~G~~~-i~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 80 QFLITNLTLNAEPH-LKYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred HHHHHHHHHcCCCc-eEEEEEEeCCCcccHHHHHHhc
Confidence 9999887 22221 2346777899999999999883
No 29
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=98.37 E-value=5.8e-06 Score=69.06 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 72 DDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
.+....++..+-+.+.+| +.+|||+++..+|+|. .|.|-- ...|..++|||+-||.
T Consensus 21 ~~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVE---------------------n~~~~~sIcAEr~ai~ 78 (173)
T KOG0833|consen 21 PQELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVE---------------------NASYHHSICAERFAIA 78 (173)
T ss_pred HHHHHHHHHHHHHhccCCccCCceEEEEEecCCcEE-Eeeeec---------------------ccCCCCcccHHHHHHH
Confidence 455666776666667776 6999999999999876 999961 1335668999999999
Q ss_pred Hcc--ccCCCCcEEEEe------CCCcHHHHHHHHHhCCCEEEEEeec
Q 027047 150 NTN--HASAAGQRLYVT------MFPCNECAKIIIQSGVSEVIYFVEK 189 (229)
Q Consensus 150 ~a~--~~~~~g~tLYvT------~ePC~~Ca~ai~~sGI~rVvy~~~~ 189 (229)
++. ++..--+...+. ..||..|.+.|...+-...++-..+
T Consensus 79 ~l~l~g~~k~~~~aV~~~~~~~f~tPCG~CRQfl~Ef~~~~~l~~~~~ 126 (173)
T KOG0833|consen 79 NLALNGERKFRAIAVVAYEDGDFTTPCGVCRQFLREFGNASLLLEYRA 126 (173)
T ss_pred HHHHcCcccceEEEEEecCCCCcCCCcHHHHHHHHHHhhcceeeeecC
Confidence 973 222222333343 7899999999999998744444443
No 30
>PLN02182 cytidine deaminase
Probab=98.18 E-value=8.9e-06 Score=74.62 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCC--CCcHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPY--VCHAEV 145 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~--~~HAE~ 145 (229)
+.++....++...+..+..| +.+|||++...+|+|. +|.|-. ..+ |+. ++|||.
T Consensus 43 ~~~~ll~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy-~GvNVE---------------nas------~pl~~tICAEr 100 (339)
T PLN02182 43 TDPIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVY-LGVNVD---------------FPG------LPLHHSIHAEQ 100 (339)
T ss_pred ChHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEee---------------cCC------CccCCccCHHH
Confidence 45666777777777788876 7999999999999976 999962 111 223 789999
Q ss_pred HHHHHcc--cc-CCCCcEEEEe------CCCcHHHHHHHHHhC
Q 027047 146 NAILNTN--HA-SAAGQRLYVT------MFPCNECAKIIIQSG 179 (229)
Q Consensus 146 ~Ai~~a~--~~-~~~g~tLYvT------~ePC~~Ca~ai~~sG 179 (229)
.||.++- +. .+..-.+.+. ..||-+|.+.|.+..
T Consensus 101 ~AI~~A~~~Ge~~i~~iaVaV~~~~~~~~sPCG~CRQfm~Ef~ 143 (339)
T PLN02182 101 FLVTNLALNSEKDLCELAVAISTDGKEFGTPCGHCLQFLMEMS 143 (339)
T ss_pred HHHHHHHHCCCCceEEEEEEEecCCCCCcCCCchhHHHHHHhC
Confidence 9999872 11 1111112222 679999999999984
No 31
>PRK09027 cytidine deaminase; Provisional
Probab=98.17 E-value=1.6e-05 Score=72.02 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
+.++.-+.+.-..+..+..| +.+|||++...+|+|. +|.|-- ..+- .|..++|||..|
T Consensus 48 ~~~~l~~~ll~~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE---------------~~~~----s~~~tiCAEr~A 107 (295)
T PRK09027 48 DDDALALALLPLAAACAVTPISHFNVGAIARGVSGNFY-FGANME---------------FAGA----ALQQTVHAEQSA 107 (295)
T ss_pred CHHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeec---------------cCCC----CCCCCcCHHHHH
Confidence 44555556666666677776 7999999999999987 999951 1111 255689999999
Q ss_pred HHHcc--ccCCCCcEEEEeCCCcHHHHHHHHHhC
Q 027047 148 ILNTN--HASAAGQRLYVTMFPCNECAKIIIQSG 179 (229)
Q Consensus 148 i~~a~--~~~~~g~tLYvT~ePC~~Ca~ai~~sG 179 (229)
|.++- +.. .=..+.++..||-+|.+.|.+..
T Consensus 108 i~~a~~~Ge~-~i~~I~v~~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 108 ISHAWLRGEK-AIADITVNYTPCGHCRQFMNELN 140 (295)
T ss_pred HHHHHHCCCC-ceEEEEEEecCchhhHHHHHHhC
Confidence 98872 221 22456677889999999999973
No 32
>PRK09027 cytidine deaminase; Provisional
Probab=98.11 E-value=2.3e-05 Score=71.02 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 72 DDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
++..++.|++.+++|..| +.+||++|.++||+|+ +|+|- ++.-|+.+++||..||.
T Consensus 189 ~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nv---------------------ENAAynpslcaer~Al~ 246 (295)
T PRK09027 189 GDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYA---------------------ENAAFNPSLPPLQGALN 246 (295)
T ss_pred HHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEE---------------------EcCCCCCcccHHHHHHH
Confidence 345889999999999987 6999999999999987 99996 23446669999999998
Q ss_pred Hc--cccC---CCCcEEEEe----CCCcHHHHHHHHHhCCCEEEE
Q 027047 150 NT--NHAS---AAGQRLYVT----MFPCNECAKIIIQSGVSEVIY 185 (229)
Q Consensus 150 ~a--~~~~---~~g~tLYvT----~ePC~~Ca~ai~~sGI~rVvy 185 (229)
.+ .+.. .....|+.. ..||.+|...|...+-..+-|
T Consensus 247 ~~v~~G~~~~~i~~i~lv~~~~~~ispcg~cRq~L~ef~~~~~~~ 291 (295)
T PRK09027 247 LLNLSGEDFSDIQRAVLVEKADAKLSQWDATQATLKALGCHELER 291 (295)
T ss_pred HHHHcCCCccCEEEEEEEeCCCCCcCchHHHHHHHHHhCCCCcEE
Confidence 86 2222 233334433 469999999999876554444
No 33
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=97.55 E-value=0.00053 Score=61.87 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHc
Q 027047 74 YFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNT 151 (229)
Q Consensus 74 ~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a 151 (229)
..++.|++.+++|..| +.+|||+|++.||+|. .|+|- +..-|+.+++||..||..+
T Consensus 176 ~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nv---------------------ENAay~~slcaer~Ai~~~ 233 (283)
T TIGR01355 176 HLKQQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYI---------------------ESAAFNPSLGPVQAALVDF 233 (283)
T ss_pred HHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEe---------------------ecCCCCCcccHHHHHHHHH
Confidence 3889999999999987 6999999999999987 99996 2334666899999999876
Q ss_pred c----ccCCC---CcEEEEe----CCCcHHHHHHHHHhCCC
Q 027047 152 N----HASAA---GQRLYVT----MFPCNECAKIIIQSGVS 181 (229)
Q Consensus 152 ~----~~~~~---g~tLYvT----~ePC~~Ca~ai~~sGI~ 181 (229)
- +.... ...|--+ ..||.+|...|...+..
T Consensus 234 v~~g~g~~~~~i~~aVl~e~~~~~vs~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 234 MANGGGKGFEDIVRAVLVEKADAKVSHEATARTLLETIAPS 274 (283)
T ss_pred HHhCCCCChhheeEEEEEecCCCccChHHHHHHHHHHhCCC
Confidence 1 12222 2233222 46899999999887654
No 34
>PLN02402 cytidine deaminase
Probab=96.92 E-value=0.0027 Score=57.83 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHH
Q 027047 73 DYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILN 150 (229)
Q Consensus 73 e~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~ 150 (229)
+..+..|++.+++|+.| +.+|||+|+..||+|+ .|+|- +..-|+.+++||..||..
T Consensus 193 ~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nv---------------------ENAay~~slcAer~Ai~~ 250 (303)
T PLN02402 193 DDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYM---------------------ESAAYNPSMGPVQAALVA 250 (303)
T ss_pred HHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEE---------------------EcCCCCCcccHHHHHHHH
Confidence 45889999999999987 6999999999999976 99996 233466699999999998
Q ss_pred c
Q 027047 151 T 151 (229)
Q Consensus 151 a 151 (229)
+
T Consensus 251 ~ 251 (303)
T PLN02402 251 Y 251 (303)
T ss_pred H
Confidence 6
No 35
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=96.32 E-value=0.046 Score=44.83 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHcc--ccC-CCCcEEEEeCCCcHHHHHHHH----HhCCCEEEEEee
Q 027047 140 VCHAEVNAILNTN--HAS-AAGQRLYVTMFPCNECAKIII----QSGVSEVIYFVE 188 (229)
Q Consensus 140 ~~HAE~~Ai~~a~--~~~-~~g~tLYvT~ePC~~Ca~ai~----~sGI~rVvy~~~ 188 (229)
..|||..+|.+|- +.. ....+|||...+|..|-..|- .+|++.+.....
T Consensus 80 ~~HAE~~aiqqA~d~G~~~g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 80 KAHAEAGAIQQAYDAGKTVGRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred HHHHHHHHHHHHHHhcCccCCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 5799999999982 223 567899999888999986654 579998877765
No 36
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=96.07 E-value=0.023 Score=48.38 Aligned_cols=78 Identities=23% Similarity=0.198 Sum_probs=49.5
Q ss_pred CCcHHHHHHHHccccCC--C----CcEEEEeCCCcHH----HHHHHHHh-------CCCEEEEEee-cCCCCch-hhhhH
Q 027047 140 VCHAEVNAILNTNHASA--A----GQRLYVTMFPCNE----CAKIIIQS-------GVSEVIYFVE-KRLNNSD-VAYIA 200 (229)
Q Consensus 140 ~~HAE~~Ai~~a~~~~~--~----g~tLYvT~ePC~~----Ca~ai~~s-------GI~rVvy~~~-~~~~~~~-~~~~~ 200 (229)
..|||+.-|.......+ . .-|+|+|..||.. |+..|+.. +|+=.+|... +...... ..+-.
T Consensus 51 ~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~~~~~~Ca~~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~e 130 (188)
T PF08210_consen 51 GRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCPESDHCCAEKIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQE 130 (188)
T ss_dssp SB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--CC----HHHHHHHHHCCC--TTEEEEEEESS--STTSTT---HHH
T ss_pred CCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCcchhhHHHHHHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHH
Confidence 36999999998743321 1 2589999999999 99999984 3333444443 2211111 01468
Q ss_pred HHHHHHHCCCeEEEech
Q 027047 201 SHKLLSMAGVKVRKHQP 217 (229)
Q Consensus 201 ~~~~L~~~GV~v~~~~~ 217 (229)
|+..|.++||+|..+..
T Consensus 131 GLr~L~~aGv~v~iM~~ 147 (188)
T PF08210_consen 131 GLRRLASAGVQVEIMSY 147 (188)
T ss_dssp HHHHHHHCTEEEEE-SH
T ss_pred HHHHHHHcCCEEEEcCH
Confidence 99999999999998863
No 37
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=95.71 E-value=0.037 Score=44.04 Aligned_cols=44 Identities=27% Similarity=0.421 Sum_probs=30.7
Q ss_pred CCCCCcHHHHHHHHcc------ccCCCCcEEEEe-------------CCCcHHHHHHHHHhCC
Q 027047 137 YPYVCHAEVNAILNTN------HASAAGQRLYVT-------------MFPCNECAKIIIQSGV 180 (229)
Q Consensus 137 ~~~~~HAE~~Ai~~a~------~~~~~g~tLYvT-------------~ePC~~Ca~ai~~sGI 180 (229)
|..-.|||+.||.++- ...+.++.+|+. ..||..|+..+.+.||
T Consensus 63 ~~~G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 63 FGAGRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV 125 (125)
T ss_pred cCCCcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence 3346799999998862 223334444432 5689999999999886
No 38
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=95.13 E-value=0.05 Score=43.48 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHc
Q 027047 75 FMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNT 151 (229)
Q Consensus 75 ~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a 151 (229)
....|++.|++|..| +.++|++|++.+|+|. .|++- +...|+.++.+.+.||..+
T Consensus 36 l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~-~G~y~---------------------EnAAfNPSl~PlQ~AL~~~ 92 (124)
T PF08211_consen 36 LVQAALEAANRSYAPYSKCPSGVALLTSDGRIY-TGRYA---------------------ENAAFNPSLPPLQAALVQA 92 (124)
T ss_dssp HHHHHHHHHCT-B-TTT---EEEEEEETTS-EE-EEE-B-----------------------TTSTT-B-HHHHHHHHH
T ss_pred HHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEE---------------------eecccCCChHHHHHHHHHH
Confidence 789999999999987 6999999999999986 88885 2233555899999999876
No 39
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=90.33 E-value=0.21 Score=39.62 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHccccCCC---CcEEEEeCCCcHH---HHHHHHHh--CCCEEEEEeecC
Q 027047 140 VCHAEVNAILNTNHASAA---GQRLYVTMFPCNE---CAKIIIQS--GVSEVIYFVEKR 190 (229)
Q Consensus 140 ~~HAE~~Ai~~a~~~~~~---g~tLYvT~ePC~~---Ca~ai~~s--GI~rVvy~~~~~ 190 (229)
..|+|..++..+...... =..||+-++||.. |+.+|... +++ |.|..++.
T Consensus 45 ~~H~E~~il~~l~~~~v~p~~I~elYtEl~PC~~~~~C~~~l~~~~p~a~-vt~s~~yg 102 (118)
T PF14440_consen 45 KPHSERAILHQLRAHGVPPEQITELYTELEPCELGGYCARMLRNSLPGAE-VTYSFDYG 102 (118)
T ss_pred CCChHHHHHHHHHHcCCcHHHHHHHHHhcccccccchHHHHHHhhCCCCe-EEEeccCC
Confidence 469999999887432222 2579999999999 99999997 665 78888774
No 40
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=75.38 E-value=5.2 Score=32.05 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHcccc-CCCCcEEEEeCCCcHHHHHHHHHhC
Q 027047 140 VCHAEVNAILNTNHA-SAAGQRLYVTMFPCNECAKIIIQSG 179 (229)
Q Consensus 140 ~~HAE~~Ai~~a~~~-~~~g~tLYvT~ePC~~Ca~ai~~sG 179 (229)
.+|||+..+...... ....-.+=+|.-||..|...|...|
T Consensus 67 ~vHaE~~ll~~~~~~~~~~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 67 SVHAEMQLLDHLERHFDPPPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CeehHHHHHHHHHHhcCCCCCEEEEeCchHHhHHHHHHHhC
Confidence 689999999875433 1234455588999999999999999
No 41
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=73.79 E-value=6.6 Score=31.61 Aligned_cols=44 Identities=18% Similarity=0.421 Sum_probs=33.6
Q ss_pred cCCCCCcHHHHHHHHcc-----ccCC--CCcEEEEeCCCcHHHHHHHHHhC
Q 027047 136 KYPYVCHAEVNAILNTN-----HASA--AGQRLYVTMFPCNECAKIIIQSG 179 (229)
Q Consensus 136 ~~~~~~HAE~~Ai~~a~-----~~~~--~g~tLYvT~ePC~~Ca~ai~~sG 179 (229)
.+.+...+|...|...+ .... ..-+||+.+.||..|...|.+..
T Consensus 69 ~~~R~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 69 GFPRNNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred cccccccHHHHHHHHHHHHhccccccCCceEEEEecCCcChhHHHHHHHHH
Confidence 35678899999998753 1222 34689999999999999998864
No 42
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=68.16 E-value=16 Score=28.78 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHccccCCCCcEEEE--eCCCcHHHHHHHHHh----CCCEEEEEeec
Q 027047 140 VCHAEVNAILNTNHASAAGQRLYV--TMFPCNECAKIIIQS----GVSEVIYFVEK 189 (229)
Q Consensus 140 ~~HAE~~Ai~~a~~~~~~g~tLYv--T~ePC~~Ca~ai~~s----GI~rVvy~~~~ 189 (229)
..|-|-.++.+.....+.|=.|.+ +..||+.|-.++.++ |.+ |.|..+.
T Consensus 48 aTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~-I~Y~w~~ 102 (118)
T PF14427_consen 48 ATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGAT-IQYTWPN 102 (118)
T ss_pred hhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcE-EEEecCC
Confidence 569999999987544444544443 578999999999885 454 5666543
No 43
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=59.22 E-value=23 Score=31.17 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=37.4
Q ss_pred CCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEec
Q 027047 166 FPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQ 216 (229)
Q Consensus 166 ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~ 216 (229)
.|......++.+.|++||-...+|. +..-..-.++|+++|++|..+.
T Consensus 106 t~~~A~~~AL~alg~~RIalvTPY~----~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 106 TPSSAAVDGLAALGVRRISLLTPYT----PETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCc----HHHHHHHHHHHHhCCcEEeeee
Confidence 4566788888889999999999995 2223466799999999998764
No 44
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=56.68 E-value=9.4 Score=30.83 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=39.0
Q ss_pred CCCCCcHHHHHHHHccccCCCCcEEEEe-CCCcHH---HHHHHHHh---CCCEEEEEeec
Q 027047 137 YPYVCHAEVNAILNTNHASAAGQRLYVT-MFPCNE---CAKIIIQS---GVSEVIYFVEK 189 (229)
Q Consensus 137 ~~~~~HAE~~Ai~~a~~~~~~g~tLYvT-~ePC~~---Ca~ai~~s---GI~rVvy~~~~ 189 (229)
+....|.|..+-...-.......+||++ ..||.. |..+|-.. |-+=.||+..+
T Consensus 65 ~~~~~HVE~k~Aa~Mr~~g~~~a~vvIN~n~pC~~~~gC~~~l~~iLP~GstLtV~~~~~ 124 (135)
T PF14428_consen 65 PTAASHVEGKAAAWMRRNGIKHATVVINPNGPCGGRDGCDQLLPAILPEGSTLTVHWPGG 124 (135)
T ss_pred ccchhhhhHHHHHHHHHcCCeEEEEEEeCCCCCCCccCHHHHHHHhCCCCCEEEEEeeCC
Confidence 3446799988765554456778999999 999999 99887663 66655665543
No 45
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=48.77 E-value=14 Score=34.71 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=14.0
Q ss_pred cEEEEeCCCcHHHHHHH
Q 027047 159 QRLYVTMFPCNECAKII 175 (229)
Q Consensus 159 ~tLYvT~ePC~~Ca~ai 175 (229)
..||+|.-||-.|++-.
T Consensus 118 lhlYiS~~PCGdAs~~~ 134 (374)
T smart00552 118 FHLYISTLPCGDASIFS 134 (374)
T ss_pred EEEEeccCCcccccccc
Confidence 57999999999877653
No 46
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=47.31 E-value=43 Score=27.09 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHHHccccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEE
Q 027047 144 EVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVR 213 (229)
Q Consensus 144 E~~Ai~~a~~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~ 213 (229)
=.+.+.. ....+.|+.++-..= =-.=+.+++..||++|+=..-. -.+.++|+++||++.
T Consensus 34 L~~ll~~-~~~~l~ga~vaDKvv-GKAAA~lmv~ggv~~vyA~viS---------~~Al~~L~~~gI~v~ 92 (134)
T PF08973_consen 34 LYDLLNE-EPEFLKGAVVADKVV-GKAAAALMVLGGVKEVYADVIS---------EPALDLLEEAGIKVS 92 (134)
T ss_dssp HHHHHHH--S---TT-EEEEEEE--HHHHHHHHHH--SEEEEEEEE---------HHHHHHHHHTT--EE
T ss_pred HHHHHHh-ChhhhhcccHHHHHH-hHHHHHHHHHhcHHHHHHHHHh---------HHHHHHHHHcCCcee
Confidence 3444443 344578888886532 2346778888999997543322 368999999999986
No 47
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=42.99 E-value=64 Score=25.60 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEec
Q 027047 171 CAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQ 216 (229)
Q Consensus 171 Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~ 216 (229)
=+..|+..|++-|+-..-- ..+...|+.+||+|....
T Consensus 57 ~a~~l~~~gvdvvi~~~iG---------~~a~~~l~~~GIkv~~~~ 93 (121)
T COG1433 57 IAELLVDEGVDVVIASNIG---------PNAYNALKAAGIKVYVAP 93 (121)
T ss_pred HHHHHHHcCCCEEEECccC---------HHHHHHHHHcCcEEEecC
Confidence 4566677777755433322 245677777777776554
No 48
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=41.91 E-value=1.2e+02 Score=23.40 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=33.2
Q ss_pred EEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEe
Q 027047 160 RLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKH 215 (229)
Q Consensus 160 tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~ 215 (229)
.++++.-|=..=...|.+.|++.||...++.+.+.......-.+..++.|+....+
T Consensus 8 ~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 8 DLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp TEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred CeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 46788888777778999999999998887754332222223457889999997543
No 49
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=39.53 E-value=43 Score=19.55 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=11.0
Q ss_pred EEEEEecCCeEEEEeecC
Q 027047 94 GACLVSQDGIILGIGYNG 111 (229)
Q Consensus 94 GAvIV~~dg~II~~G~N~ 111 (229)
.++|. .||+|.+.|.|.
T Consensus 11 t~al~-~~g~v~~wG~n~ 27 (30)
T PF13540_consen 11 TCALT-SDGEVYCWGDNN 27 (30)
T ss_dssp EEEEE--TTEEEEEE--T
T ss_pred EEEEE-cCCCEEEEcCCc
Confidence 45555 699999999996
No 50
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=37.23 E-value=1.4e+02 Score=29.42 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHcc--c
Q 027047 76 MAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTN--H 153 (229)
Q Consensus 76 M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~--~ 153 (229)
|..|....+.-+. -|+++.+||..|+.|.-+..+ +++-..|+.+|. +
T Consensus 399 L~FAwkv~k~vKS-----NAIv~akd~~tvGiGaGQ~sR--------------------------V~s~riA~~kA~~~~ 447 (511)
T TIGR00355 399 LLFAWKVAKHVKS-----NAIVYAKNNMTVGVGAGQMSR--------------------------VGSAKIAGIKADDEG 447 (511)
T ss_pred HHHHHHHHhhccC-----ceEEEEeCCeEEEecCCCccH--------------------------HHHHHHHHHHHHhhC
Confidence 5555555554443 466666899999999876411 477788999883 4
Q ss_pred cCCCCcEEEEe-CCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEE
Q 027047 154 ASAAGQRLYVT-MFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVR 213 (229)
Q Consensus 154 ~~~~g~tLYvT-~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~ 213 (229)
....|+.|-.- -+|=.-|......+||+-||=--. + ....+.++.-.+.||.+.
T Consensus 448 ~~~~G~vlASDAFFPF~D~ve~aa~aGi~aIiQPGG-----S-iRD~evI~aa~e~giaMv 502 (511)
T TIGR00355 448 LEAKGSSLASDAFFPFRDGVEEAAAAGITCIIQPGG-----S-MRDEDSIWAADEHGIVMV 502 (511)
T ss_pred CCccCcEEEeccccCCCccHHHHHHcCCEEEEcCCC-----C-CCcHHHHHHHHHhCCEEE
Confidence 56788887665 578889999999999998863111 1 112467888899999874
No 51
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=33.42 E-value=52 Score=29.00 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecC
Q 027047 76 MAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNG 111 (229)
Q Consensus 76 M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~ 111 (229)
|--++..+......+..+-|||+..+|+|-+.|||-
T Consensus 60 M~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~L 95 (287)
T KOG1682|consen 60 MMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNL 95 (287)
T ss_pred HHHHHHHHHhhcccccceeEEEEecCCccccccccH
Confidence 555555555555567888999999999999999996
No 52
>PLN02182 cytidine deaminase
Probab=32.52 E-value=76 Score=29.63 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEee
Q 027047 73 DYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGY 109 (229)
Q Consensus 73 e~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~ 109 (229)
......|+..|++|..| +.+-|.+|.+.||+|. .|+
T Consensus 202 ~~l~~~Al~AAn~S~APYS~~~SGvAL~~~~G~vy-~G~ 239 (339)
T PLN02182 202 SHLKCKALAAANNSFSPYTESPSGVALLDNDGKWY-RGW 239 (339)
T ss_pred cHHHHHHHHHHHhccCCccCCCceEEEEeCCCCEE-Eee
Confidence 44668999999999987 6899999999999986 554
No 53
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=30.78 E-value=1.2e+02 Score=26.11 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=25.7
Q ss_pred HHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHC-CCeEEEechh
Q 027047 173 KIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMA-GVKVRKHQPQ 218 (229)
Q Consensus 173 ~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~-GV~v~~~~~~ 218 (229)
.+..++||++|||.+...............+.|++. |+..+.++|-
T Consensus 90 ~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~ 136 (285)
T TIGR03649 90 DFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT 136 (285)
T ss_pred HHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence 345567888888876421100011112345677775 8888777664
No 54
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=28.47 E-value=1.6e+02 Score=20.84 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEe-chhHHHHh
Q 027047 171 CAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKH-QPQMRQIL 223 (229)
Q Consensus 171 Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~-~~~~~~~~ 223 (229)
-+..|...|+.-||.+.-. ......|++.||+|... ...+.+++
T Consensus 45 ~~~~l~~~~v~~li~~~iG---------~~~~~~L~~~gI~v~~~~~~~i~~~l 89 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGIG---------EGAFRALKEAGIKVYQGAGGDIEEAL 89 (94)
T ss_dssp HHHHHHHTTESEEEESCSC---------HHHHHHHHHTTSEEEESTSSBHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCC---------HHHHHHHHHCCCEEEEcCCCCHHHHH
Confidence 3444455666655544421 24456677777776653 23344443
No 55
>PF05507 MAGP: Microfibril-associated glycoprotein (MAGP); InterPro: IPR008673 This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres. This suggests that MAGP-2 may be important in the assembly of microfibrils [].; GO: 0001527 microfibril
Probab=27.62 E-value=57 Score=26.38 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=27.4
Q ss_pred CcEEEEeCCCcHHHHHHHHHhCCCEEEEEee
Q 027047 158 GQRLYVTMFPCNECAKIIIQSGVSEVIYFVE 188 (229)
Q Consensus 158 g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~ 188 (229)
=+-||.-+.||-.|..-|--..++|+|....
T Consensus 90 ctRlySvhrP~kqCi~~lCf~slrRmYvINk 120 (137)
T PF05507_consen 90 CTRLYSVHRPCKQCIHQLCFYSLRRMYVINK 120 (137)
T ss_pred eeeehhccccHHHHHHHHHhhceeeEEEech
Confidence 4679999999999999999999999876654
No 56
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=27.38 E-value=36 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=18.2
Q ss_pred EeCCCcHHHHHHHHHhCCCEEEEEee
Q 027047 163 VTMFPCNECAKIIIQSGVSEVIYFVE 188 (229)
Q Consensus 163 vT~ePC~~Ca~ai~~sGI~rVvy~~~ 188 (229)
++.-||++|..+...+=-+.=|..+.
T Consensus 13 ~~tLPC~~Cr~HA~~ai~kNNiMSs~ 38 (70)
T PF04805_consen 13 CSTLPCPECRIHAKEAIQKNNIMSSN 38 (70)
T ss_pred HhcCCCHHHHHHHHHHHHhcCccccC
Confidence 56789999999888764444444444
No 57
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.22 E-value=1.8e+02 Score=20.90 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEech--hHHHHhh
Q 027047 171 CAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQP--QMRQILI 224 (229)
Q Consensus 171 Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~--~~~~~~~ 224 (229)
-...+...|+.-|+.+.-. ......|+.+||++..... .+++.+-
T Consensus 53 ~~~~l~~~~v~~vi~~~iG---------~~a~~~l~~~gI~v~~~~~~~~v~eal~ 99 (102)
T cd00562 53 AARLLALEGCDAVLVGGIG---------GPAAAKLEAAGIKPIKAAEGGTIEEALE 99 (102)
T ss_pred HHHHHHHCCCcEEEEcccC---------ccHHHHHHHcCCEEEEcCCCCcHHHHHH
Confidence 4455666777766555432 2456778888888765543 4455443
No 58
>TIGR02940 anfO_nitrog Fe-only nitrogenase accessory protein AnfO. Members of this protein family, called Anf1 in Rhodobacter capsulatus and AnfO in Azotobacter vinelandii, are found only in species with the Fe-only nitrogenase and are encoded immediately downstream of the structural genes in the above named species.
Probab=27.08 E-value=93 Score=27.19 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEecCCeEEEEeecCCCCCCCCCCCccccc
Q 027047 95 ACLVSQDGIILGIGYNGFPRGCSDDKLPWAKK 126 (229)
Q Consensus 95 AvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~ 126 (229)
||+|+.+|++.+..-.++-.-+..++..|...
T Consensus 3 Av~v~~~G~~~s~~e~G~i~vye~~~~~W~~~ 34 (214)
T TIGR02940 3 AAVVNDEGEISSIFDKGFILLFEEDGGEWKVL 34 (214)
T ss_pred EEEECCCCCEecccCCeEEEEEecCCCeEEEE
Confidence 68888899888776555433344445555443
No 59
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=26.43 E-value=24 Score=20.51 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=1.5
Q ss_pred eCCCcHHHH
Q 027047 164 TMFPCNECA 172 (229)
Q Consensus 164 T~ePC~~Ca 172 (229)
|.-||.||.
T Consensus 2 sCCPCamc~ 10 (27)
T PF08098_consen 2 SCCPCAMCK 10 (27)
T ss_dssp -S--S----
T ss_pred cccccccce
Confidence 457898884
No 60
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=26.31 E-value=72 Score=22.44 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.6
Q ss_pred CceEEEEEecCCeEEEE
Q 027047 91 RQVGACLVSQDGIILGI 107 (229)
Q Consensus 91 ~~VGAvIV~~dg~II~~ 107 (229)
.--|++|+++||.+|+.
T Consensus 14 gv~~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 14 GVRGAVLVDKDGLVIAS 30 (91)
T ss_dssp TEEEEEEEETTSEEEEE
T ss_pred CeeEEEEEcCCCCEEEE
Confidence 45589999999999988
No 61
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=25.47 E-value=1.6e+02 Score=24.17 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEee
Q 027047 73 DYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGY 109 (229)
Q Consensus 73 e~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~ 109 (229)
...+..|+..|++ ...+|...|||.+|++++.=.
T Consensus 14 ~~ii~aA~a~a~~---~g~~VtvaVVD~~G~~~a~~R 47 (141)
T COG3193 14 NKIIAAAVAEAQQ---LGVPVTVAVVDAGGHLVALER 47 (141)
T ss_pred HHHHHHHHHHHHH---hCCceEEEEECCCCCEEEEEe
Confidence 4567777777776 488999999999999886543
No 62
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=24.95 E-value=6.9e+02 Score=24.78 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccc
Q 027047 74 YFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNH 153 (229)
Q Consensus 74 ~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~ 153 (229)
.=|..|...++.-+. .-| |++ +||.+|+.|.-+.. -+++-..||.+++.
T Consensus 399 ~Dl~faw~v~K~vkS--NaI--Vvv-kd~~~vgIgaGQ~s--------------------------Rvd~t~~Ai~rag~ 447 (513)
T PRK00881 399 KDLLFAWKVVKHVKS--NAI--VYA-KDGQTVGIGAGQMS--------------------------RVDSARIAIEKAGD 447 (513)
T ss_pred HHHHHHHHHHHhcCC--CcE--EEE-eCCeEEEECCCCcc--------------------------hHHHHHHHHHHHHH
Confidence 357778888776543 222 666 79999999986531 14777788888853
Q ss_pred --cCCCCcEEEEe-CCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEE
Q 027047 154 --ASAAGQRLYVT-MFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVR 213 (229)
Q Consensus 154 --~~~~g~tLYvT-~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~ 213 (229)
..+.|+.+-.- .+|=..+...+..+||+-|+--... ....+.++.-.++||.+.
T Consensus 448 ~~~~~~gav~aSDafFPf~Dtie~aa~~Gv~aIiqPgGS------irD~evI~aAne~gIamv 504 (513)
T PRK00881 448 AGLDLKGAVLASDAFFPFRDGVEAAAKAGITAIIQPGGS------IRDEEVIAAADEHGIAMV 504 (513)
T ss_pred hccCcCCeEEEeeCCCCchhHHHHHHHcCCeEEEeCCCC------CChHHHHHHHHHcCCEEE
Confidence 33577776543 4678899999999999987644332 222467888999999875
No 63
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=22.94 E-value=75 Score=23.88 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=17.3
Q ss_pred CCCceEEEEEecCCeEEEEeecC
Q 027047 89 PNRQVGACLVSQDGIILGIGYNG 111 (229)
Q Consensus 89 ~~~~VGAvIV~~dg~II~~G~N~ 111 (229)
|..-||++|++.+|+|+-.-.+.
T Consensus 1 ~~~~~~~~i~~~~~~vLL~~r~~ 23 (125)
T cd04679 1 PRVGCGAAILRDDGKLLLVKRLR 23 (125)
T ss_pred CceEEEEEEECCCCEEEEEEecC
Confidence 35678999998889987765543
No 64
>PLN02891 IMP cyclohydrolase
Probab=21.99 E-value=3.7e+02 Score=26.81 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccccC
Q 027047 76 MAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHAS 155 (229)
Q Consensus 76 M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~~~ 155 (229)
|..|....+--+. =|+++.+||..|+.|.-+..+ +++-..|+.+++ ..
T Consensus 436 L~FAwkvvK~vKS-----NAIV~akd~~tvGIGaGQ~sR--------------------------Vda~~iA~~kA~-~~ 483 (547)
T PLN02891 436 AKFAWLCVKHVKS-----NAIVVAKNNRMLGMGSGQPNR--------------------------VESLRIALEKAG-EE 483 (547)
T ss_pred HHHHHHHHhhccC-----ceEEEEeCCeEEEecCCCccH--------------------------HHHHHHHHHHhc-cc
Confidence 5556655554333 356666899999999876411 466777888884 56
Q ss_pred CCCcEEEEe-CCCcH--HHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEE
Q 027047 156 AAGQRLYVT-MFPCN--ECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVR 213 (229)
Q Consensus 156 ~~g~tLYvT-~ePC~--~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~ 213 (229)
+.|+.|-.- -+|=. -|......+||+-||=--. + ....+.++.-.+.||.+.
T Consensus 484 ~~G~vlASDAFFPF~~~D~ve~aa~~Gv~aIIQPGG-----S-iRD~evI~aane~giaMv 538 (547)
T PLN02891 484 AKGAALASDAFFPFAWNDAVEEACQAGVKVIAEPGG-----S-MRDQDAIDCCNKYGVALL 538 (547)
T ss_pred cCCeEEEecccCCCCCCccHHHHHHhCCEEEECCCC-----C-CCcHHHHHHHHHhCCEEE
Confidence 788877655 45665 8999999999998762211 1 112467888889999874
No 65
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=21.72 E-value=87 Score=21.51 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.1
Q ss_pred ceEEEEEecCCeEEEE
Q 027047 92 QVGACLVSQDGIILGI 107 (229)
Q Consensus 92 ~VGAvIV~~dg~II~~ 107 (229)
|+|.+++|++|+|+..
T Consensus 1 p~~i~i~d~~g~i~~~ 16 (104)
T PF13426_consen 1 PDGIFILDPDGRILYV 16 (104)
T ss_dssp -SEEEEEETTSBEEEE
T ss_pred CEEEEEECCcCcEEeh
Confidence 6799999999999854
No 66
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=20.89 E-value=5.9e+02 Score=22.52 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHHHc------cccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEe
Q 027047 146 NAILNT------NHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKH 215 (229)
Q Consensus 146 ~Ai~~a------~~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~ 215 (229)
||+.++ .+..+.++.|++|..==..=....+.+||.-|+ ....| . ..++++=++.||.+.-+
T Consensus 182 NAvDKviG~all~g~~~~~~~l~~SGR~s~emv~Ka~~aGipviv-S~saP---T----~lAVelA~~~giTLiGf 249 (263)
T PRK00724 182 NALDKLIGAALRAGIPLRDGALLVSGRASSEMVQKAAMAGIPILV-AVSAP---T----SLAVELAEELGLTLVGF 249 (263)
T ss_pred HHHHHHHHHHHHcCCCccCcEEEEeCCchHHHHHHHHHcCCcEEE-Ecccc---h----HHHHHHHHHhCCEEEEE
Confidence 566654 356778888988866333344555678999654 44432 1 46899999999998655
No 67
>CHL00194 ycf39 Ycf39; Provisional
Probab=20.78 E-value=2.1e+02 Score=25.23 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCEEEEEeecC---CCCch--hhhhHHHHHHHHCCCeEEEech
Q 027047 171 CAKIIIQSGVSEVIYFVEKR---LNNSD--VAYIASHKLLSMAGVKVRKHQP 217 (229)
Q Consensus 171 Ca~ai~~sGI~rVvy~~~~~---~~~~~--~~~~~~~~~L~~~GV~v~~~~~ 217 (229)
...+...+|++++||..... ..... .......+.+++.|++++.++|
T Consensus 93 l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~tilRp 144 (317)
T CHL00194 93 LIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYTIFRL 144 (317)
T ss_pred HHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeEEEee
Confidence 34455556777777655421 01111 1123456777788888776654
No 68
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=20.67 E-value=2.6e+02 Score=20.09 Aligned_cols=46 Identities=24% Similarity=0.210 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEech-hHHHHhhh
Q 027047 171 CAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQP-QMRQILIT 225 (229)
Q Consensus 171 Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~-~~~~~~~~ 225 (229)
-...|...|+.-||.+.-. ......|+.+||++..... .+++++-.
T Consensus 55 ~~~~l~~~~v~~vi~~~iG---------~~~~~~l~~~gI~v~~~~~~~i~~vl~~ 101 (103)
T cd00851 55 AAEFLADEGVDVVIVGGIG---------PRALNKLRNAGIKVYKGAEGTVEEAIEA 101 (103)
T ss_pred HHHHHHHcCCCEEEeCCCC---------cCHHHHHHHCCCEEEEcCCCCHHHHHHh
Confidence 3444555777766554322 2456778888888765552 44555443
No 69
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=20.62 E-value=1.6e+02 Score=27.29 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCEEEEEeecC
Q 027047 171 CAKIIIQSGVSEVIYFVEKR 190 (229)
Q Consensus 171 Ca~ai~~sGI~rVvy~~~~~ 190 (229)
=..+|+.+||.||||+....
T Consensus 245 ~tEHL~eSgvGrIV~FYtis 264 (397)
T COG5139 245 HTEHLVESGVGRIVYFYTIS 264 (397)
T ss_pred hHHHhhhcCCceEEEEEecC
Confidence 45789999999999999764
Done!