Query 027047
Match_columns 229
No_of_seqs 136 out of 1480
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w4l_A DCMP deaminse, deoxycyt 100.0 5.9E-42 2E-46 286.8 16.0 163 62-228 3-165 (178)
2 1vq2_A DCMP deaminase, deoxycy 100.0 2.1E-34 7E-39 243.4 8.8 141 71-217 2-176 (193)
3 2hvw_A Deoxycytidylate deamina 100.0 2.8E-33 9.7E-38 235.3 11.9 134 67-216 37-175 (184)
4 1p6o_A Cytosine deaminase; hyd 100.0 9.5E-32 3.2E-36 221.5 12.2 132 69-227 11-148 (161)
5 2g84_A Cytidine and deoxycytid 100.0 6.9E-31 2.4E-35 222.8 12.7 139 67-226 23-179 (197)
6 2a8n_A Cytidine and deoxycytid 100.0 4.6E-31 1.6E-35 213.4 7.7 132 70-226 2-144 (144)
7 2nx8_A TRNA-specific adenosine 100.0 1.5E-30 5E-35 217.8 8.7 133 69-226 13-156 (179)
8 2b3j_A TRNA adenosine deaminas 100.0 2.3E-30 7.8E-35 212.7 8.0 133 69-226 4-147 (159)
9 3dh1_A TRNA-specific adenosine 100.0 4.9E-30 1.7E-34 216.4 6.9 135 70-226 24-174 (189)
10 1z3a_A TRNA-specific adenosine 100.0 9.8E-30 3.4E-34 210.8 8.2 132 70-226 7-149 (168)
11 1wwr_A TRNA adenosine deaminas 100.0 1.6E-29 5.5E-34 210.1 8.3 131 71-226 22-162 (171)
12 1wkq_A Guanine deaminase; doma 100.0 6.2E-29 2.1E-33 205.4 10.0 137 70-228 9-157 (164)
13 2g6v_A Riboflavin biosynthesis 99.9 1.3E-27 4.5E-32 221.8 12.9 129 68-226 26-165 (402)
14 2b3z_A Riboflavin biosynthesis 99.9 2.8E-27 9.5E-32 217.6 13.9 127 70-226 12-149 (373)
15 2hxv_A Diaminohydroxyphosphori 99.9 2.1E-26 7.1E-31 210.8 14.3 124 73-226 15-151 (360)
16 3g8q_A Predicted RNA-binding p 99.9 2.6E-24 8.9E-29 185.3 10.9 91 87-217 18-108 (278)
17 2nyt_A Probable C->U-editing e 99.8 9.2E-19 3.1E-23 147.5 13.9 113 89-227 31-158 (190)
18 1uwz_A Cytidine deaminase; CDD 99.6 6E-15 2.1E-19 118.0 9.4 86 72-179 3-97 (136)
19 2fr5_A Cytidine deaminase; tet 99.5 2.2E-13 7.5E-18 110.2 10.8 87 71-179 14-110 (146)
20 2z3g_A Blasticidin-S deaminase 99.4 1E-12 3.4E-17 104.3 12.1 88 70-181 5-101 (130)
21 3b8f_A Putative blasticidin S 99.3 4.1E-12 1.4E-16 102.2 8.3 95 71-187 3-108 (142)
22 1r5t_A Cytidine deaminase; zin 99.2 2.5E-10 8.6E-15 91.8 11.3 86 72-179 11-107 (142)
23 2d30_A Cytidine deaminase; pur 99.2 1.3E-10 4.6E-15 93.3 9.4 88 69-179 10-106 (141)
24 3r2n_A Cytidine deaminase; str 99.1 2.1E-10 7E-15 91.9 9.7 94 70-186 9-111 (138)
25 1ctt_A Cytidine deaminase; hyd 98.9 4.3E-09 1.5E-13 93.9 9.1 91 69-179 47-140 (294)
26 3mpz_A Cytidine deaminase; ssg 98.9 5.7E-09 1.9E-13 84.6 7.8 84 73-179 26-119 (150)
27 1ctt_A Cytidine deaminase; hyd 98.8 2.5E-08 8.5E-13 88.9 10.4 87 72-180 188-285 (294)
28 3dmo_A Cytidine deaminase; str 98.7 9.7E-08 3.3E-12 76.4 9.4 86 72-179 11-107 (138)
29 3oj6_A Blasticidin-S deaminase 98.5 1.3E-06 4.6E-11 71.2 12.3 87 70-180 29-124 (158)
30 4eg2_A Cytidine deaminase; UMP 98.2 3.5E-06 1.2E-10 75.1 9.0 91 70-180 51-144 (298)
31 4eg2_A Cytidine deaminase; UMP 97.9 4.2E-05 1.4E-09 68.1 9.1 85 73-179 193-288 (298)
32 3v4k_A DNA DC->DU-editing enzy 97.4 0.00074 2.5E-08 56.9 9.0 75 140-217 78-163 (203)
33 3vow_A Probable DNA DC->DU-edi 97.1 0.002 6.7E-08 53.9 8.6 78 140-218 64-151 (190)
34 1zy7_A RNA-specific adenosine 46.9 23 0.0008 32.3 5.1 15 159-173 144-158 (403)
35 1vk9_A Conserved hypothetical 45.2 35 0.0012 27.1 5.2 59 144-213 50-108 (151)
36 4ehi_A Bifunctional purine bio 37.3 55 0.0019 31.1 6.0 102 75-213 421-525 (534)
37 3zzm_A Bifunctional purine bio 36.6 76 0.0026 30.0 6.9 101 75-213 413-514 (523)
38 1eo1_A Hypothetical protein MT 30.9 79 0.0027 23.0 5.1 24 158-181 65-88 (124)
39 1nm3_A Protein HI0572; hybrid, 30.0 2.1E+02 0.0071 22.7 8.9 69 94-184 127-199 (241)
40 1xri_A AT1G05000; structural g 27.2 1.8E+02 0.0063 21.2 6.7 49 161-215 15-63 (151)
41 1o13_A Probable NIFB protein; 25.3 88 0.003 23.5 4.5 14 201-214 89-102 (136)
42 2yx6_A Hypothetical protein PH 24.8 1E+02 0.0035 22.3 4.7 24 158-181 63-86 (121)
43 3gxh_A Putative phosphatase (D 24.1 2.3E+02 0.0079 21.3 6.8 53 160-215 21-73 (157)
44 1zcz_A Bifunctional purine bio 23.9 2.7E+02 0.0092 25.9 8.1 100 76-213 355-455 (464)
No 1
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-42 Score=286.75 Aligned_cols=163 Identities=56% Similarity=1.042 Sum_probs=143.0
Q ss_pred ccccCCCChHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCC
Q 027047 62 PSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVC 141 (229)
Q Consensus 62 ~~~~~~~~~~de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 141 (229)
+.|++.+++||++||++|+++|++|.++++|||||||++||+||++|+|+.|.+|.+..|||.+. .++|++.+|.++.
T Consensus 3 ~~~~~~~~~~d~~~M~~A~~~A~~s~~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~--~g~p~~~~~~~t~ 80 (178)
T 2w4l_A 3 CKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT--AENKLDTKYPYVC 80 (178)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTTCCCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSC--CSSGGGSSTTTCB
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccc--cCCccccccCCcC
Confidence 34788999999999999999999999999999999998899999999999999999999999763 4788888999999
Q ss_pred cHHHHHHHHccccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEechhHHH
Q 027047 142 HAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQ 221 (229)
Q Consensus 142 HAE~~Ai~~a~~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~~~~~ 221 (229)
|||++||.++.+..+.|++||||+|||.||+++|+++||++|||+..++.+ +.. ...++++|+++||+|+++.++..+
T Consensus 81 HAE~~AI~~a~g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d-~~~-~~~~~~~L~~aGI~V~~~~~~~~~ 158 (178)
T 2w4l_A 81 HAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHD-SDE-ATAARLLFNMAGVTFRKFIPKCSK 158 (178)
T ss_dssp CHHHHHHHC----CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTT-SHH-HHHHHHHHHHHTCEEEECCCSCSE
T ss_pred CHHHHHHHHhcCCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCC-Ccc-hHHHHHHHHHCCCEEEEccHHHHH
Confidence 999999999877789999999999999999999999999999999874322 221 235799999999999999999899
Q ss_pred Hhhhccc
Q 027047 222 ILITFEE 228 (229)
Q Consensus 222 ~~~~~~~ 228 (229)
+.+.|.+
T Consensus 159 l~~~f~~ 165 (178)
T 2w4l_A 159 IVIDFDS 165 (178)
T ss_dssp EEEEGGG
T ss_pred HHHHHHh
Confidence 9998875
No 2
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=100.00 E-value=2.1e-34 Score=243.36 Aligned_cols=141 Identities=33% Similarity=0.474 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCC-----Ccccccc-----cCCC---------
Q 027047 71 WDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDK-----LPWAKKS-----KIGD--------- 131 (229)
Q Consensus 71 ~de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~-----~~~~~~~-----~~~~--------- 131 (229)
||++||++|+.+|++|.++++||||||| +||+||++|||++|.|..+.. ..|.+.. ..+.
T Consensus 2 ~d~~fM~~A~~~A~rs~~~~~~VGAVIV-~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T 1vq2_A 2 KASTVLQIAYLVSQESKCCSWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS 80 (193)
T ss_dssp CHHHHHHHHHHHHTTCCCSSBCCEEEEE-ETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC------------------
T ss_pred CHHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999 799999999999998632110 0010000 0000
Q ss_pred -------------CCCCcCCCCCcHHHHHHHHcc--ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchh
Q 027047 132 -------------PLETKYPYVCHAEVNAILNTN--HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDV 196 (229)
Q Consensus 132 -------------pl~~~~~~~~HAE~~Ai~~a~--~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~ 196 (229)
....+|+++.|||++||.++. +..+.|++||||+|||+||+++|+++||++|||+.+++...
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~--- 157 (193)
T 1vq2_A 81 TDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK--- 157 (193)
T ss_dssp --CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC---
T ss_pred ccccccchhhccccccccCCCCCCHHHHHHHHHHhcCCCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcc---
Confidence 001123458999999999985 35789999999999999999999999999999997765321
Q ss_pred hhhHHHHHHHHCCCeEEEech
Q 027047 197 AYIASHKLLSMAGVKVRKHQP 217 (229)
Q Consensus 197 ~~~~~~~~L~~~GV~v~~~~~ 217 (229)
+.+.++|+++||+|.++..
T Consensus 158 --~~~~~~l~~aGI~v~~~~~ 176 (193)
T 1vq2_A 158 --PGWDDILRNAGIEVFNVPK 176 (193)
T ss_dssp --TTTTHHHHHTTCEEEECCG
T ss_pred --hHHHHHHHHCCCEEEEeCH
Confidence 2235999999999998754
No 3
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=100.00 E-value=2.8e-33 Score=235.25 Aligned_cols=134 Identities=35% Similarity=0.555 Sum_probs=111.3
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCC---CCCCCCcccccccCCCCCCCcCCCCCcH
Q 027047 67 GYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRG---CSDDKLPWAKKSKIGDPLETKYPYVCHA 143 (229)
Q Consensus 67 ~~~~~de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~---~~~~~~~~~~~~~~~~pl~~~~~~~~HA 143 (229)
.+++||++||++|+++|++++++++|||||||+ ||+||++|+|+.|.+ |.+..+.+ ++..|+.+.||
T Consensus 37 ~~~~~de~~M~~A~~~A~~s~~~~~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~---------~~~~~~~t~HA 106 (184)
T 2hvw_A 37 NRLSWQDYFMANAELISKRSTCNRAYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEM---------EDGHCIRTVHA 106 (184)
T ss_dssp CCCCHHHHHHHHHHHHGGGCCCTTCCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCE---------ETTEECSEECH
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEE-CCEEEEEEECCCcccccccccccccc---------cccccCCccCH
Confidence 567899999999999999999999999999996 999999999998765 22211111 12235568999
Q ss_pred HHHHHHHcc--ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEec
Q 027047 144 EVNAILNTN--HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQ 216 (229)
Q Consensus 144 E~~Ai~~a~--~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~ 216 (229)
|++||.++. +..+.|++||+|+|||.||+++|+++||++|||+..++.+ ..++++|+++||+|+...
T Consensus 107 E~~AI~~A~~~g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~------~~~~~~L~~aGIeV~~~~ 175 (184)
T 2hvw_A 107 EMNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIH------PFAIELMTQKEVEYVQHD 175 (184)
T ss_dssp HHHHHHHHHHHTCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCC------HHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHcCCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCC------HHHHHHHHHCCCEEEEec
Confidence 999999985 3578999999999999999999999999999999987532 135899999999998764
No 4
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.97 E-value=9.5e-32 Score=221.48 Aligned_cols=132 Identities=26% Similarity=0.426 Sum_probs=111.6
Q ss_pred ChHHHHHHHHHHHHHhhcCCC-CCceEEEEE-ecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHH
Q 027047 69 LSWDDYFMAIAFLSAERSKDP-NRQVGACLV-SQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVN 146 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S~~~-~~~VGAvIV-~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~ 146 (229)
+.||++||++|+++|+++.++ +.||||||| ++||+||++|+|..+ ..++| +.|||++
T Consensus 11 ~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~--------------~~~~~-------t~HAE~~ 69 (161)
T 1p6o_A 11 SKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRF--------------QKGSA-------TLHGEIS 69 (161)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHH--------------HHTCS-------SCCHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCC--------------CCCCc-------ccCHHHH
Confidence 478999999999999999764 799999999 489999999999842 23555 7899999
Q ss_pred HHHHcccc---CCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEe-chhHHHH
Q 027047 147 AILNTNHA---SAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKH-QPQMRQI 222 (229)
Q Consensus 147 Ai~~a~~~---~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~-~~~~~~~ 222 (229)
||.++.+. .+.|++||+|+|||.||+++|+++||++|||+..++.. +.+.++|+++||+|..+ ..++.++
T Consensus 70 Ai~~a~~~~~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~------g~~~~~l~~~gi~v~~~~~~e~~~l 143 (161)
T 1p6o_A 70 TLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFK------SKGEKYLQTRGHEVVVVDDERCKKI 143 (161)
T ss_dssp HHHHHCSCCHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCC------CTHHHHHHHTTCEEEECCCHHHHHH
T ss_pred HHHHHHHhCCccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCC------ccHHHHHHhcCCEEEEecHHHHHHH
Confidence 99998643 57899999999999999999999999999999987532 24678999999999876 4667777
Q ss_pred hhhcc
Q 027047 223 LITFE 227 (229)
Q Consensus 223 ~~~~~ 227 (229)
+-.|-
T Consensus 144 ~~~f~ 148 (161)
T 1p6o_A 144 MKQFI 148 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76663
No 5
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.97 E-value=6.9e-31 Score=222.78 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=109.5
Q ss_pred CCChHHHHHHHHHHHHHhhcCCC-CCceEEEEEecC-CeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHH
Q 027047 67 GYLSWDDYFMAIAFLSAERSKDP-NRQVGACLVSQD-GIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAE 144 (229)
Q Consensus 67 ~~~~~de~~M~~A~~~A~~S~~~-~~~VGAvIV~~d-g~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE 144 (229)
....+|++||++|+++|+++.+. ..|||||||++| |+||+.|+|+++ ...++ +.|||
T Consensus 23 ~~~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~--------------~~~~~-------~~HAE 81 (197)
T 2g84_A 23 RVLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVV--------------PGRCS-------AAHAE 81 (197)
T ss_dssp CBCCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTT--------------TTTCT-------TCCHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCC--------------ccCCC-------ccCHH
Confidence 34568999999999999998754 799999999878 999999999864 23455 68999
Q ss_pred HHHHHHccc----cC-----CCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCC---c--hhhhhHHHHHHHHCCC
Q 027047 145 VNAILNTNH----AS-----AAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNN---S--DVAYIASHKLLSMAGV 210 (229)
Q Consensus 145 ~~Ai~~a~~----~~-----~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~---~--~~~~~~~~~~L~~~GV 210 (229)
++||.++.+ .. +.|+|||||+|||.||+++|+++||+||||+..++... . ......+++.|+.+||
T Consensus 82 ~~Ai~~a~~~~~~~~L~~~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i 161 (197)
T 2g84_A 82 ILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGI 161 (197)
T ss_dssp HHHHHHHHHHHTCSCTTCTTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCccccccCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCC
Confidence 999998743 22 35799999999999999999999999999999875310 0 0001247789999999
Q ss_pred eEEE--echhHHHHhhhc
Q 027047 211 KVRK--HQPQMRQILITF 226 (229)
Q Consensus 211 ~v~~--~~~~~~~~~~~~ 226 (229)
+|.. +..++.+++-.|
T Consensus 162 ~V~~gvl~~e~~~ll~~f 179 (197)
T 2g84_A 162 TVTTGLLRDAACALLREY 179 (197)
T ss_dssp EEECCTTHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHH
Confidence 9974 346666666655
No 6
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.97 E-value=4.6e-31 Score=213.37 Aligned_cols=132 Identities=24% Similarity=0.369 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHhhcCC-CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKD-PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~-~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
.||++||++|+++|+++.+ ++.|||||||+ ||+||++|+|..+ ...+| +.|||++||
T Consensus 2 ~~d~~~m~~A~~~A~~a~~~~~~~VGAviv~-~g~Ii~~G~N~~~--------------~~~~~-------~~HAE~~Ai 59 (144)
T 2a8n_A 2 AERTHFMELALVEARSAGERDEVPIGAVLVL-DGRVIARSGNRTR--------------ELNDV-------TAHAEIAVI 59 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHH--------------HHTCT-------TCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcCCCCCEEEEEEE-CCEEEEEEECCCC--------------CCCCC-------cCCHHHHHH
Confidence 5799999999999999876 58999999997 9999999999842 23455 789999999
Q ss_pred HHcc----ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHH----CCCeEEE--echh
Q 027047 149 LNTN----HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSM----AGVKVRK--HQPQ 218 (229)
Q Consensus 149 ~~a~----~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~----~GV~v~~--~~~~ 218 (229)
.++. ...+.|++||+|+|||.||+++|+++||++|||+..++.... .+.+.++|+. ++++|.. +..+
T Consensus 60 ~~a~~~~~~~~~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~---~g~~~~~~~~~~~~~~~~v~~gvl~~e 136 (144)
T 2a8n_A 60 RMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGA---VESGVRFFSQPTCHHAPDVYSGLAESE 136 (144)
T ss_dssp HHHHHHHTCSCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBC---SSSTTCGGGSTTCCCCCEEEEC-----
T ss_pred HHHHHHcCCCccCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccc---cchHHHHHhccccCCCcEEEeCCCHHH
Confidence 9984 347899999999999999999999999999999998864321 2335677776 7898864 3455
Q ss_pred HHHHhhhc
Q 027047 219 MRQILITF 226 (229)
Q Consensus 219 ~~~~~~~~ 226 (229)
..+++-.|
T Consensus 137 ~~~l~~~f 144 (144)
T 2a8n_A 137 SAEILRQF 144 (144)
T ss_dssp --------
T ss_pred HHHHHhcC
Confidence 56655544
No 7
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.96 E-value=1.5e-30 Score=217.84 Aligned_cols=133 Identities=28% Similarity=0.391 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHHHHhhcCC-CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 69 LSWDDYFMAIAFLSAERSKD-PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S~~-~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
++||++||++|+++|+++.+ ++.|||||||+ ||+||+.|+|.. ....|| +.|||++|
T Consensus 13 ~~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~-~g~Ii~~G~N~~--------------~~~~d~-------t~HAE~~A 70 (179)
T 2nx8_A 13 LEEQTYFMQEALKESEKSLQKAEIPIGCVIVK-DGEIIGRGHNAR--------------EESNQA-------IMHAEMMA 70 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCH--------------HHHTCT-------TCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccccCCCCEEEEEEE-CCEEEEEEECCC--------------CCcCCC-------ccCHHHHH
Confidence 47899999999999999875 58999999996 999999999984 233455 78999999
Q ss_pred HHHccc----cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHC----CCeEEE--ech
Q 027047 148 ILNTNH----ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMA----GVKVRK--HQP 217 (229)
Q Consensus 148 i~~a~~----~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~----GV~v~~--~~~ 217 (229)
|.++.. ..+.|+|||||+|||.||+++|+|+||+||||+..+|... ..+.+.++|+.. +++|.. +..
T Consensus 71 I~~a~~~~~~~~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g---~~g~~~~~l~~~~~~~~~~V~~gvl~~ 147 (179)
T 2nx8_A 71 INEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFG---GVDSLYQILTDERLNHRVQVERGLLAA 147 (179)
T ss_dssp HHHHHHHHTSSCCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTB---TTTTSCCGGGCTTTTCCCEEEECTTHH
T ss_pred HHHHHHHcCCCcccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCc---ccccHHHHhhccccCCCcEEEcCCCHH
Confidence 999853 4688999999999999999999999999999999886432 123456777765 677764 345
Q ss_pred hHHHHhhhc
Q 027047 218 QMRQILITF 226 (229)
Q Consensus 218 ~~~~~~~~~ 226 (229)
++.+++-.|
T Consensus 148 e~~~l~~~f 156 (179)
T 2nx8_A 148 DCANIMQTF 156 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666555
No 8
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.96 E-value=2.3e-30 Score=212.71 Aligned_cols=133 Identities=27% Similarity=0.370 Sum_probs=107.0
Q ss_pred ChHHHHHHHHHHHHHhhcCC-CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 69 LSWDDYFMAIAFLSAERSKD-PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S~~-~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
+.||++||++|+++|+++.+ ++.|||||||+ ||+||++|+|.. ....++ +.|||++|
T Consensus 4 m~~d~~~m~~A~~~A~~a~~~~~~pVGAviv~-~g~Ii~~G~N~~--------------~~~~~~-------~~HAE~~A 61 (159)
T 2b3j_A 4 MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITK-DDEVIARAHNLR--------------ETLQQP-------TAHAEHIA 61 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCH--------------HHHTCT-------TCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCCEEEEEEE-CCEEEEEEECCC--------------CCCCCC-------ccCHHHHH
Confidence 35899999999999999876 58999999997 999999999984 123344 78999999
Q ss_pred HHHccc----cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHH----CCCeEEE--ech
Q 027047 148 ILNTNH----ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSM----AGVKVRK--HQP 217 (229)
Q Consensus 148 i~~a~~----~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~----~GV~v~~--~~~ 217 (229)
|.++.. ..+.|++||+|+|||.||+++|+++||++|||+..+|.... .+.++++|+. .+++|.. +..
T Consensus 62 i~~a~~~~~~~~l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~---~g~~~~~l~~~~~~~~~~v~~gvl~~ 138 (159)
T 2b3j_A 62 IERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGC---SGSLMNLLQQSNFNHRAIVDKGVLKE 138 (159)
T ss_dssp HHHHHHHHTSSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCT---BTTSCBTTSCTTSSCCCEEECCTTHH
T ss_pred HHHHHHHcCCCCcceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCccc---ccHHHHHHhccccCCCCEEEcCCCHH
Confidence 999843 47889999999999999999999999999999999864321 2344677777 6787754 345
Q ss_pred hHHHHhhhc
Q 027047 218 QMRQILITF 226 (229)
Q Consensus 218 ~~~~~~~~~ 226 (229)
++.+++-.|
T Consensus 139 e~~~l~~~f 147 (159)
T 2b3j_A 139 ACSTLLTTF 147 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666555
No 9
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.9e-30 Score=216.37 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHhhcC-CCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSK-DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~-~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
.+|++||++|+++|+++. .++.|||||||+ ||+||+.|+|+++ ...++ +.|||++||
T Consensus 24 ~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~-~g~IIa~G~N~~~--------------~~~~~-------t~HAEi~AI 81 (189)
T 3dh1_A 24 EETEKWMEEAMHMAKEALENTEVPVGCLMVY-NNEVVGKGRNEVN--------------QTKNA-------TRHAEMVAI 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHH--------------HHTCT-------TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCCEEEEEEE-CCEEEEEEeCCCC--------------ccCCC-------cCcHHHHHH
Confidence 569999999999999985 579999999995 9999999999852 23445 689999999
Q ss_pred HHccc----------cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCc-hhhhhHHHHHHHHCC--CeEEE-
Q 027047 149 LNTNH----------ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNS-DVAYIASHKLLSMAG--VKVRK- 214 (229)
Q Consensus 149 ~~a~~----------~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~-~~~~~~~~~~L~~~G--V~v~~- 214 (229)
.++.+ ..+.|+|||||+|||.||+++|+|+||+||||+..+|...- .....-..+.|+..| |+|..
T Consensus 82 ~~a~~~~~~~~~~~~~~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~G 161 (189)
T 3dh1_A 82 DQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPG 161 (189)
T ss_dssp HHHHHHHHHHCCCHHHHHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECC
T ss_pred HHHHHHHhhcCcccccccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeC
Confidence 98743 23689999999999999999999999999999998753210 000000123456778 66643
Q ss_pred -echhHHHHhhhc
Q 027047 215 -HQPQMRQILITF 226 (229)
Q Consensus 215 -~~~~~~~~~~~~ 226 (229)
+..++.+++-.|
T Consensus 162 vl~~e~~~Ll~~F 174 (189)
T 3dh1_A 162 YRAEEAVEMLKTF 174 (189)
T ss_dssp TTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 335556665555
No 10
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.96 E-value=9.8e-30 Score=210.81 Aligned_cols=132 Identities=27% Similarity=0.391 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHhhcCC-CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKD-PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~-~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
.+|++||++|+++|+++.+ ++.||||||| +||+||+.|+|.. ....+| +.|||++||
T Consensus 7 ~~d~~~M~~A~~~A~~a~~~~~~pVGAviV-~~g~Ii~~G~N~~--------------~~~~d~-------t~HAE~~Ai 64 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDEREVPVGAVLV-HNNRVIGEGWNRP--------------IGRHDP-------TAHAEIMAL 64 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCH--------------HHHTCT-------TCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEE-ECCEEEEEEEccc--------------ccCCCc-------chhHHHHHH
Confidence 4689999999999999876 5899999999 5999999999984 223455 789999999
Q ss_pred HHcc----ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHC----CCeEEE--echh
Q 027047 149 LNTN----HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMA----GVKVRK--HQPQ 218 (229)
Q Consensus 149 ~~a~----~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~----GV~v~~--~~~~ 218 (229)
.++. ...+.|++||+|+|||.||+++|+++||+||||+..+|...- .+.++++|+.. +++|.. +..+
T Consensus 65 ~~a~~~~~~~~l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~---~g~~~~~l~~~~~~~~~~v~~gvl~~e 141 (168)
T 1z3a_A 65 RQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGA---AGSLMDVLHHPGMNHRVEITEGILADE 141 (168)
T ss_dssp HHHHHHHTSSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCT---BTTSCBCTTCTTCSSCCEEECCTTHHH
T ss_pred HHHHHHcCCCcccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccc---cchhHHHhhccccCCCcEEEcCCCHHH
Confidence 9984 346889999999999999999999999999999998864321 23345677766 677753 3455
Q ss_pred HHHHhhhc
Q 027047 219 MRQILITF 226 (229)
Q Consensus 219 ~~~~~~~~ 226 (229)
+.+++-.|
T Consensus 142 ~~~l~~~f 149 (168)
T 1z3a_A 142 CAALLSDF 149 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55666555
No 11
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.96 E-value=1.6e-29 Score=210.13 Aligned_cols=131 Identities=27% Similarity=0.435 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhhcCC-CCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 71 WDDYFMAIAFLSAERSKD-PNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 71 ~de~~M~~A~~~A~~S~~-~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
+|++||++|+++|+++.+ ++.|||||||+ ||+||++|+|..+ ...+| +.|||++||.
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~-dg~Ii~~G~N~~~--------------~~~d~-------t~HAE~~AI~ 79 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKGEVPVGAIIVK-EGEIISKAHNSVE--------------ELKDP-------TAHAEMLAIK 79 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHH--------------HHTCT-------TCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCCCCCEEEEEEE-CCEEEEEEECCCC--------------ccCCc-------ccCHHHHHHH
Confidence 478999999999999976 58999999997 9999999999842 23455 7899999999
Q ss_pred Hccc----cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHH----CCCeEEEe-chhHH
Q 027047 150 NTNH----ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSM----AGVKVRKH-QPQMR 220 (229)
Q Consensus 150 ~a~~----~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~----~GV~v~~~-~~~~~ 220 (229)
++.. ..+.|++||+|+|||.||+++|+++||++|||+..+|... ..+.+.++|+. .|++|..+ ..++.
T Consensus 80 ~a~~~~g~~~l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g---~~g~~~~~l~~~~~~~~i~V~~vl~~e~~ 156 (171)
T 1wwr_A 80 EACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHG---GVVSVFNILDEPTLNHRVKWEYYPLEEAS 156 (171)
T ss_dssp HHHHHHTCSCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTB---TTTTSCCGGGCTTCSSCCEEEECCCHHHH
T ss_pred HHHHHcCCCccCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCcc---ccchHHHHHhccccCCCcEEEEecHHHHH
Confidence 9853 4789999999999999999999999999999999886432 12334677775 89998763 46666
Q ss_pred HHhhhc
Q 027047 221 QILITF 226 (229)
Q Consensus 221 ~~~~~~ 226 (229)
+++-.|
T Consensus 157 ~ll~~f 162 (171)
T 1wwr_A 157 ELLSEF 162 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 12
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.95 E-value=6.2e-29 Score=205.36 Aligned_cols=137 Identities=21% Similarity=0.228 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHhhcCC-C-CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKD-P-NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~-~-~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
..|+.||++|+++|+++.. + +.||||||| +||+||++|+|..+ ...|| +.|||++|
T Consensus 9 ~~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV-~~g~Ii~~G~N~~~--------------~~~d~-------~~HAE~~A 66 (164)
T 1wkq_A 9 MNHETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNNVT--------------TSNDP-------TAHAEVTA 66 (164)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECCHH--------------HHTCT-------TCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE-ECCEEEEEEecCCc--------------CCCCc-------ccCHHHHH
Confidence 3488899999999999864 3 899999999 59999999999852 23455 78999999
Q ss_pred HHHccc----cCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCC-chhhhhHHHHH----HHHCCCeEEEe-ch
Q 027047 148 ILNTNH----ASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNN-SDVAYIASHKL----LSMAGVKVRKH-QP 217 (229)
Q Consensus 148 i~~a~~----~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~-~~~~~~~~~~~----L~~~GV~v~~~-~~ 217 (229)
|.++.+ ..+.|++||||+|||.||+++|+++||+||||+..++... ..+......++ +...++.+..+ ..
T Consensus 67 I~~a~~~~~~~~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v~gv~~~ 146 (164)
T 1wkq_A 67 IRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLT 146 (164)
T ss_dssp HHHHHHHHTSSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCEEECCCT
T ss_pred HHHHHHHcCCCCcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEEEecCHH
Confidence 999853 4789999999999999999999999999999999875311 00000122344 34677888655 46
Q ss_pred hHHHHhhhccc
Q 027047 218 QMRQILITFEE 228 (229)
Q Consensus 218 ~~~~~~~~~~~ 228 (229)
++.+++-.|.+
T Consensus 147 e~~~ll~~f~~ 157 (164)
T 1wkq_A 147 EHLSPFQAWRN 157 (164)
T ss_dssp TTTHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66677766643
No 13
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.95 E-value=1.3e-27 Score=221.80 Aligned_cols=129 Identities=33% Similarity=0.488 Sum_probs=108.6
Q ss_pred CChHHHHHHHHHHHHHhhc---CCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHH
Q 027047 68 YLSWDDYFMAIAFLSAERS---KDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAE 144 (229)
Q Consensus 68 ~~~~de~~M~~A~~~A~~S---~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE 144 (229)
+..||++||++|+++|+++ .+|+++||||||+ ||+||+.|||+. .+ +.|||
T Consensus 26 ~~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----------------~g---------~~HAE 79 (402)
T 2g6v_A 26 IQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVK-DGEIVGEGYHQR----------------AG---------EPHAE 79 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEE-TTEEEEEEECCC----------------TT---------SCCHH
T ss_pred CCHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEE-CCEEEEEEeCCC----------------CC---------ccHHH
Confidence 3469999999999999998 4689999999996 999999999984 22 35999
Q ss_pred HHHHHHccccCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEE--ec
Q 027047 145 VNAILNTNHASAAGQRLYVTMFPC------NECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK--HQ 216 (229)
Q Consensus 145 ~~Ai~~a~~~~~~g~tLYvT~ePC------~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~--~~ 216 (229)
++||.+++ ..+.|+|||||+||| +||+++|+++||+||||+..+|.+. ..+.++++|+++||+|.. +.
T Consensus 80 ~~Ai~~a~-~~~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~---~~g~g~~~l~~~gi~v~~g~l~ 155 (402)
T 2g6v_A 80 VHALRMAG-EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQ---VAGRGLYRLQQAGIDVSHGLMM 155 (402)
T ss_dssp HHHHHHHG-GGGGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCS---SSTTHHHHHHHTTCCEEECTTT
T ss_pred HHHHHHhh-HhcCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCcc---ccchHHHHHHhCCcEEEeCCcc
Confidence 99999985 457899999999999 5899999999999999999886432 135689999999999986 35
Q ss_pred hhHHHHhhhc
Q 027047 217 PQMRQILITF 226 (229)
Q Consensus 217 ~~~~~~~~~~ 226 (229)
.++.+++..|
T Consensus 156 ~e~~~l~~~f 165 (402)
T 2g6v_A 156 SEAEQLNKGF 165 (402)
T ss_dssp THHHHHTHHH
T ss_pred hhhHHHhhhh
Confidence 6666766655
No 14
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.95 E-value=2.8e-27 Score=217.57 Aligned_cols=127 Identities=34% Similarity=0.532 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHhhcC---CCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHH
Q 027047 70 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVN 146 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~---~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~ 146 (229)
+-|+.||++|+++|+++. +++++|||||| +||+||+.|||+. .+ +.|||++
T Consensus 12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~----------------~~---------~~HAE~~ 65 (373)
T 2b3z_A 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLK----------------YG---------EAHAEVH 65 (373)
T ss_dssp -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCS----------------TT---------SCCHHHH
T ss_pred chHHHHHHHHHHHHHhhCcccCCCCcEEEEEE-ECCEEEEEEeCCC----------------CC---------CcCHHHH
Confidence 458899999999999984 68999999999 4999999999984 22 4599999
Q ss_pred HHHHccccCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEE--echh
Q 027047 147 AILNTNHASAAGQRLYVTMFPC------NECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK--HQPQ 218 (229)
Q Consensus 147 Ai~~a~~~~~~g~tLYvT~ePC------~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~--~~~~ 218 (229)
||.+++ ..+.|+|||||+||| +||+++|+++||+||||+..+|... ..+.++++|+++||+|.. +..+
T Consensus 66 Ai~~a~-~~~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~---~~g~~~~~l~~~gi~v~~g~l~~e 141 (373)
T 2b3z_A 66 AIHMAG-AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPL---VAGRGISMMKEAGIEVREGILADQ 141 (373)
T ss_dssp HHHHHG-GGGTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTT---TTTHHHHHHHTTTCEEEECTTHHH
T ss_pred HHHHhh-HhcCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchh---hhhHHHHHHHhCCeEEEeCCcccc
Confidence 999986 468899999999999 6999999999999999999886332 235689999999999986 3556
Q ss_pred HHHHhhhc
Q 027047 219 MRQILITF 226 (229)
Q Consensus 219 ~~~~~~~~ 226 (229)
+.+++..|
T Consensus 142 ~~~l~~~f 149 (373)
T 2b3z_A 142 AERLNEKF 149 (373)
T ss_dssp HHHHTHHH
T ss_pred ccccccee
Confidence 66666555
No 15
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.94 E-value=2.1e-26 Score=210.85 Aligned_cols=124 Identities=28% Similarity=0.442 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhhcC---CCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 73 DYFMAIAFLSAERSK---DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 73 e~~M~~A~~~A~~S~---~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
+.||++|+++|+++. +++++||||||+ ||+||+.|||+. .+ +.|||++||.
T Consensus 15 ~~~m~~al~lA~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----------------~~---------~~HAE~~Ai~ 68 (360)
T 2hxv_A 15 ETFMKRAIELAKKGLGRVNPNPPVGAVVVK-DGRIIAEGFHPY----------------FG---------GPHAERMAIE 68 (360)
T ss_dssp HHHHHHHHHHHHTTTTTSTTSCCCEEEEEE-TTEEEEEEECCS----------------TT---------SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEEE-CCEEEEEEeCCC----------------CC---------CcCHHHHHHH
Confidence 569999999999974 589999999995 999999999983 22 4599999999
Q ss_pred Hcc--ccCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEE--echhH
Q 027047 150 NTN--HASAAGQRLYVTMFPC------NECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK--HQPQM 219 (229)
Q Consensus 150 ~a~--~~~~~g~tLYvT~ePC------~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~--~~~~~ 219 (229)
++. +..+.|+|||||+||| +||+++|+++||+||||+..+|. + ..+.++++|+++||+|.. +..++
T Consensus 69 ~a~~~~~~~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~--~--~~g~g~~~l~~~gi~v~~g~l~~e~ 144 (360)
T 2hxv_A 69 SARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPN--P--VSGNGVEKFRNHGIEVIEGVLEEEV 144 (360)
T ss_dssp HHHHTTCCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCC--G--GGCCHHHHHHTTTCEEEECTTHHHH
T ss_pred HHHhcCCCcCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCch--h--hhhhHHHHHHhCCcEEEECCccccc
Confidence 983 4578999999999999 59999999999999999998752 2 335689999999999986 45666
Q ss_pred HHHhhhc
Q 027047 220 RQILITF 226 (229)
Q Consensus 220 ~~~~~~~ 226 (229)
.+++..|
T Consensus 145 ~~l~~~f 151 (360)
T 2hxv_A 145 KKLCEFF 151 (360)
T ss_dssp HHHTHHH
T ss_pred hhcccee
Confidence 6666655
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.91 E-value=2.6e-24 Score=185.28 Aligned_cols=91 Identities=30% Similarity=0.468 Sum_probs=80.5
Q ss_pred CCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccccCCCCcEEEEeCC
Q 027047 87 KDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMF 166 (229)
Q Consensus 87 ~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~~~~~g~tLYvT~e 166 (229)
..||++||||||+ ||+||+.|.+. +.|||++||. +..+.|++||+|+|
T Consensus 18 t~PNPpVGAVIVk-DGeIIA~Ge~g----------------------------TaHAEInAIr---g~~L~GaTLYVTLE 65 (278)
T 3g8q_A 18 EIPKRTVTAALLE-GGEIVAVEEAD----------------------------DEHAERKLVR---RHDVEGKVVFVTAR 65 (278)
T ss_dssp HSCCSSCEEEEEE-TTEEEEEEECS----------------------------SSCHHHHHHH---HSCCTTCEEEESSC
T ss_pred cCCCCCEEEEEEE-CCEEEEecCCC----------------------------CCCHHHHHhC---CCCCCCcEEEEeCC
Confidence 4699999999995 99999999432 5699999998 46789999999999
Q ss_pred CcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEech
Q 027047 167 PCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQP 217 (229)
Q Consensus 167 PC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~ 217 (229)
||.||+++|+|+||+||||+..+. +.+.++|+++||+|.++.+
T Consensus 66 PC~MCAgAII~AGIkRVVYGa~~~--------G~G~e~LreAGIEV~~L~~ 108 (278)
T 3g8q_A 66 PCLYCARELAEAGVAGVVYLGRGR--------GLGPYYLARSGVEVVEVHP 108 (278)
T ss_dssp CCHHHHHHHHTTTCCEEEEEECSS--------CCHHHHHHTTTCEEEEEEE
T ss_pred chHHHHHHHHHhCCCEEEEEecCC--------ChhHHHHHHCCCEEEEecC
Confidence 999999999999999999999752 4578999999999998865
No 17
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.79 E-value=9.2e-19 Score=147.54 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=86.3
Q ss_pred CCCceEEEEEec----CCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccc---cCCC-CcE
Q 027047 89 PNRQVGACLVSQ----DGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNH---ASAA-GQR 160 (229)
Q Consensus 89 ~~~~VGAvIV~~----dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~---~~~~-g~t 160 (229)
.+....|..|.. .+.||+.|+|.. .++ +.|||++||.+++. .... |+|
T Consensus 31 r~~tyLcy~v~~~~~~~~~ii~~G~~~~-----------------~~~-------~~HAE~~Ai~~a~~~l~~~~~~g~T 86 (190)
T 2nyt_A 31 RNKTFLCYVVEAQGKGGQVQASRGYLED-----------------EHA-------AAHAEEAFFNTILPAFDPALRYNVT 86 (190)
T ss_pred CCceEEEEEEEecCCCCCCeEEEEECCC-----------------CCC-------CcCHHHHHHHHHHHhcCccccCCeE
Confidence 356677777753 256999999972 122 56999999998853 2334 999
Q ss_pred EEEeCCCcHHHHHHHHHh-----CCCEEEEEeecCCC-CchhhhhHHHHHHHHCCCeEEEec-hhHHHHhhhcc
Q 027047 161 LYVTMFPCNECAKIIIQS-----GVSEVIYFVEKRLN-NSDVAYIASHKLLSMAGVKVRKHQ-PQMRQILITFE 227 (229)
Q Consensus 161 LYvT~ePC~~Ca~ai~~s-----GI~rVvy~~~~~~~-~~~~~~~~~~~~L~~~GV~v~~~~-~~~~~~~~~~~ 227 (229)
||||+|||.||+++|+++ ||++|||+..++.. ++. +..++++|+++||+|+.+. +++.....+|-
T Consensus 87 lYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~--~~~g~~~L~~aGI~V~~~~~~e~~~~w~~fv 158 (190)
T 2nyt_A 87 WYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPE--IQAALKKLKEAGCKLRIMKPQDFEYVWQNFV 158 (190)
T ss_pred EEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChH--HHHHHHHHHHCCCEEEEecHHHHHHHHHHHH
Confidence 999999999999999999 99999999876532 233 3589999999999999876 44555555554
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.58 E-value=6e-15 Score=118.03 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 72 DDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
|+.+|+.|+++++++..| +.||||+|++.||+|+ +|+|.. ...|+.++|||+.||.
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nve---------------------na~~~~t~cAE~~Ai~ 60 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIE---------------------NAAYSMCNCAEATALF 60 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBC---------------------CSSGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcc---------------------cCCCCCccCHHHHHHH
Confidence 567999999999999986 6899999999999999 899962 2234458999999999
Q ss_pred Hcc---ccCCCCcEEEEe----CCCcHHHHHHHHHhC
Q 027047 150 NTN---HASAAGQRLYVT----MFPCNECAKIIIQSG 179 (229)
Q Consensus 150 ~a~---~~~~~g~tLYvT----~ePC~~Ca~ai~~sG 179 (229)
++. ...+...++|++ .+||.||.++|.+.+
T Consensus 61 ~A~~~G~~~~~~~~l~~~~~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 61 KAVSEGDTEFQMLAVAADTPGPVSPCGACRQVISELC 97 (136)
T ss_dssp HHHHHTCCCEEEEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred HHHHCCCCCeEEEEEEeCCCCccCHHHHHHHHHHHcC
Confidence 873 345678899985 899999999999997
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.48 E-value=2.2e-13 Score=110.25 Aligned_cols=87 Identities=23% Similarity=0.303 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 71 WDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 71 ~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
.++.+|+.|+++++++..| +.+|||+|+++||+|+ +|+|.. ...|+.++|||++||
T Consensus 14 ~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvE---------------------nas~~~t~cAE~~Ai 71 (146)
T 2fr5_A 14 HVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIE---------------------NACYPLGVCAERTAI 71 (146)
T ss_dssp HHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBC---------------------CSSGGGCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEecc---------------------ccCCCCCcCHHHHHH
Confidence 3567999999999999875 6999999999999998 799962 223555899999999
Q ss_pred HHcc---ccCCCCcEEEEe-----CCCcHHHHHHHHHhC
Q 027047 149 LNTN---HASAAGQRLYVT-----MFPCNECAKIIIQSG 179 (229)
Q Consensus 149 ~~a~---~~~~~g~tLYvT-----~ePC~~Ca~ai~~sG 179 (229)
.++. ...+....+|++ .+||.||.+.|.+.+
T Consensus 72 ~~A~~~G~~~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 72 QKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp HHHHHTTCCCEEEEEEEESCSSSCCCCCHHHHHHHHHTC
T ss_pred HHHHhCCCCceEEEEEEeCCCCcccCCCHHHHHHHHHhC
Confidence 9873 334567788888 899999999999998
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.44 E-value=1e-12 Score=104.35 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhhcCCC-CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDP-NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~-~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
..|+.+|+.|+++++++..+ +.+|||+|++.||+|+ +|+|. + .|+.++|||+.||
T Consensus 5 ~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~Nv----------------E-------~~~~t~cAE~~Ai 60 (130)
T 2z3g_A 5 QEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNV----------------Y-------HFTGGPCAELVVL 60 (130)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECC----------------C-------CTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEecc----------------c-------cCCcccCHHHHHH
Confidence 45778999999999998875 5899999999999988 69996 2 1444899999999
Q ss_pred HHccc---cCCCCcEEEE-----eCCCcHHHHHHHHHhCCC
Q 027047 149 LNTNH---ASAAGQRLYV-----TMFPCNECAKIIIQSGVS 181 (229)
Q Consensus 149 ~~a~~---~~~~g~tLYv-----T~ePC~~Ca~ai~~sGI~ 181 (229)
.++.. ..+....+|+ +.+||.||.+.|.+.+-.
T Consensus 61 ~~A~~~G~~~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~ 101 (130)
T 2z3g_A 61 GTAAAAAAGNLTCIVAIGNENRGILSPCGRCRQVLLDLHPG 101 (130)
T ss_dssp HHHHHTTCCCEEEEEEEETTTTEEECCCHHHHHHHHHHCTT
T ss_pred HHHHHcCCCceEEEEEEECCCCCccCcCHHHHHHHHHhCCC
Confidence 98732 3455667887 688999999999999744
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=99.31 E-value=4.1e-12 Score=102.22 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHH
Q 027047 71 WDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILN 150 (229)
Q Consensus 71 ~de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~ 150 (229)
+|+.+|+.|+++++++.+|..+|||+|+++||+|+ +|+|.. ...|+.++|||++||.+
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS~VGAAl~~~dG~i~-~G~NvE---------------------nas~~~~lcAEr~Ai~~ 60 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDWGGAAAIRVEDGTIY-TSVAPD---------------------VINASTELCMETGAILE 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEEEEEEETTSCEE-EECCCC---------------------CSSGGGCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCcEE-EEECcc---------------------cccCCcccCHHHHHHHH
Confidence 57889999999999999875599999999999988 899962 22355589999999998
Q ss_pred ccc--cC-CCCcEEEE--------eCCCcHHHHHHHHHhCCCEEEEEe
Q 027047 151 TNH--AS-AAGQRLYV--------TMFPCNECAKIIIQSGVSEVIYFV 187 (229)
Q Consensus 151 a~~--~~-~~g~tLYv--------T~ePC~~Ca~ai~~sGI~rVvy~~ 187 (229)
+.. .. .....++. +..||.+|.+.|.+.|-.-.|+..
T Consensus 61 a~~~G~~~~~~~~v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~~~ 108 (142)
T 3b8f_A 61 AHKFQKKVTHSICLARENEHSELKVLSPCGVCQERLFYWGPEVQCAIT 108 (142)
T ss_dssp HHHHTCCEEEEEEEEESSTTSCCEECCCCHHHHHHHGGGCTTCEEECC
T ss_pred HHHCCCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEEEE
Confidence 732 12 22344444 355999999999999854444443
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=99.16 E-value=2.5e-10 Score=91.76 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 72 DDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
++.+|+.|+++++++..| +.+|||+|++.||+|+ +|+|-. ...|+.++|||+.||.
T Consensus 11 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvE---------------------nasy~~t~cAEr~Ai~ 68 (142)
T 1r5t_A 11 LEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVE---------------------NASYSNCICAERSAMI 68 (142)
T ss_dssp HHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBC---------------------CSSGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeec---------------------ccCCCCCcCHHHHHHH
Confidence 456999999999999886 7899999999999987 799961 2335568999999999
Q ss_pred Hcc---ccC-CCCcEEEEe----C-CCcHHHHHHHHHhC
Q 027047 150 NTN---HAS-AAGQRLYVT----M-FPCNECAKIIIQSG 179 (229)
Q Consensus 150 ~a~---~~~-~~g~tLYvT----~-ePC~~Ca~ai~~sG 179 (229)
++. ... +....++.. . .||.+|.+.|.+.+
T Consensus 69 ~a~~~G~~~~i~~i~vv~~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 69 QVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp HHHHTTCCSCCCEEEEEESCSSSCCCCCHHHHHHHHTTS
T ss_pred HHHHcCCCCceEEEEEEeCCCCcccCHHHHHHHHHHHhC
Confidence 872 223 556677763 4 89999999999986
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=99.15 E-value=1.3e-10 Score=93.33 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHH
Q 027047 69 LSWDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVN 146 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~ 146 (229)
++|. ..|+.|.++++++++| +.+|||+|++.||+|+ +|+|-. ...|+.++|||..
T Consensus 10 ~~~~-~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvE---------------------nasy~~t~CAEr~ 66 (141)
T 2d30_A 10 MNSK-QLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVE---------------------NASYGLCNCAERT 66 (141)
T ss_dssp CCHH-HHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBC---------------------CSSGGGCBCHHHH
T ss_pred cCHH-HHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-Eeeccc---------------------cCCCCcccCHHHH
Confidence 3454 4899999999999987 6899999999999887 999961 2335568999999
Q ss_pred HHHHccccCC-CCcEEEEe------CCCcHHHHHHHHHhC
Q 027047 147 AILNTNHASA-AGQRLYVT------MFPCNECAKIIIQSG 179 (229)
Q Consensus 147 Ai~~a~~~~~-~g~tLYvT------~ePC~~Ca~ai~~sG 179 (229)
||.++..... .-..+.+. ..||-+|.+.|.+.+
T Consensus 67 Ai~~Avs~G~~~~~aiav~~~~~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 67 ALFKAVSEGDKEFVAIAIVADTKRPVPPCGACRQVMVELC 106 (141)
T ss_dssp HHHHHHHTTCCCEEEEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred HHHHHHHCCCCceEEEEEEeCCCCccCcCHHHHHHHHHhc
Confidence 9998732111 11233333 679999999999986
No 24
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=99.14 E-value=2.1e-10 Score=91.94 Aligned_cols=94 Identities=23% Similarity=0.405 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
.|+ ..|..|+++++++++| +.+|||+|++.||+|+ +|.|-. ...|+.++|||..|
T Consensus 9 ~~~-~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvE---------------------nasy~~t~CAEr~A 65 (138)
T 3r2n_A 9 NWD-TLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVE---------------------NASYGLALCAECSM 65 (138)
T ss_dssp CHH-HHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBC---------------------CSSGGGCBCHHHHH
T ss_pred hHH-HHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEccc---------------------ccCCCCCcCHHHHH
Confidence 454 4899999999999886 7999999999999987 999962 22345589999999
Q ss_pred HHHccccC-CCCcEEEEe------CCCcHHHHHHHHHhCCCEEEEE
Q 027047 148 ILNTNHAS-AAGQRLYVT------MFPCNECAKIIIQSGVSEVIYF 186 (229)
Q Consensus 148 i~~a~~~~-~~g~tLYvT------~ePC~~Ca~ai~~sGI~rVvy~ 186 (229)
|.++.... ..=..++++ ..||-+|.+.|.+.+-..|+..
T Consensus 66 i~~Av~~G~~~i~aiav~~~~~~~~~PCG~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 66 ISALYATGGGRLVAVYCVDGNGDSLMPCGRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp HHHHHHTTCCCEEEEEEECTTSCBCCCCHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHcCCCceEEEEEEcCCCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 99873211 112345666 6899999999999863334443
No 25
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=98.89 E-value=4.3e-09 Score=93.85 Aligned_cols=91 Identities=25% Similarity=0.282 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHH
Q 027047 69 LSWDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVN 146 (229)
Q Consensus 69 ~~~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~ 146 (229)
++|++.++..|.+...++++| +.+|||+|++.||+|+ +|.|-. .-+ ..|..++|||.+
T Consensus 47 ~~~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvE----------------nas---~~~~~t~CAEr~ 106 (294)
T 1ctt_A 47 LDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANME----------------FIG---ATMQQTVHAEQS 106 (294)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBC----------------CTT---SCGGGCBCHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCC----------------ccC---ccCCCccCHHHH
Confidence 578888888888888888887 7999999999999887 999962 110 013347899999
Q ss_pred HHHHccccC-CCCcEEEEeCCCcHHHHHHHHHhC
Q 027047 147 AILNTNHAS-AAGQRLYVTMFPCNECAKIIIQSG 179 (229)
Q Consensus 147 Ai~~a~~~~-~~g~tLYvT~ePC~~Ca~ai~~sG 179 (229)
||.++-... ..-..+.++..||-+|.+.|.+.+
T Consensus 107 Ai~~A~~~G~~~~~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 107 AISHAWLSGEKALAAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp HHHHHHHTTCCCEEEEEESSCCCHHHHHHHTTBT
T ss_pred HHHHHHHcCCCcEEEEEEEcCCCHHHHHHHHHhC
Confidence 999873221 123567788999999999999986
No 26
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=98.86 E-value=5.7e-09 Score=84.59 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHH
Q 027047 73 DYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILN 150 (229)
Q Consensus 73 e~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~ 150 (229)
+..++.|+++.++++.| +.+|||+|...||+|+ +|.|-- ...|..++|||..||.+
T Consensus 26 ~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvE---------------------nasy~~t~CAEr~Ai~~ 83 (150)
T 3mpz_A 26 NALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVE---------------------NVSYGLGLCAECAVVCA 83 (150)
T ss_dssp HHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBC---------------------CSSGGGCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecc---------------------cccCCccccHHHHHHHH
Confidence 45899999999999876 6999999999999988 999962 22355589999999998
Q ss_pred ccc--c-CCCCcEEEEe-----CCCcHHHHHHHHHhC
Q 027047 151 TNH--A-SAAGQRLYVT-----MFPCNECAKIIIQSG 179 (229)
Q Consensus 151 a~~--~-~~~g~tLYvT-----~ePC~~Ca~ai~~sG 179 (229)
+-. . .+. ....++ ..||-+|.+.|.+.+
T Consensus 84 Avs~G~~~i~-aiavv~~~~~~~~PCG~CRQ~L~Ef~ 119 (150)
T 3mpz_A 84 LHSGGGGRLV-ALSCVGPDGGVLMPCGRCRQVLLEHG 119 (150)
T ss_dssp HHHTTCCCEE-EEEEECTTSCBCCCCHHHHHHHHHHH
T ss_pred HHHcCCCceE-EEEEEcCCCCccCCCHHHHHHHHHhC
Confidence 731 1 111 222222 589999999999985
No 27
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=98.79 E-value=2.5e-08 Score=88.94 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 72 DDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
++..++.|+++++++..| +.+|||+|++.||+|+ +|+|- +...|+.++|||..||.
T Consensus 188 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~Nv---------------------Enasy~~tlCAEr~Ai~ 245 (294)
T 1ctt_A 188 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYA---------------------ENAAFNPTLPPLQGALI 245 (294)
T ss_dssp SSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECB---------------------CCTTSTTCBCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEee---------------------ecCCCCCccCHHHHHHH
Confidence 467999999999999987 7999999999999765 89996 23345668999999999
Q ss_pred Hcc--c---cCCCCcEEEEeCC----CcHHHHHHHHHhCC
Q 027047 150 NTN--H---ASAAGQRLYVTMF----PCNECAKIIIQSGV 180 (229)
Q Consensus 150 ~a~--~---~~~~g~tLYvT~e----PC~~Ca~ai~~sGI 180 (229)
++. + ..+....++.+.+ ||.+|...|.+.|-
T Consensus 246 ~av~~G~~~~~i~~i~vv~~~~~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 246 LLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGC 285 (294)
T ss_dssp HHHHTTCCGGGEEEEEEEECTTCSSCCHHHHHHHHHHHTC
T ss_pred HHHHcCCCcCCEEEEEEEecCCCCcCccHHHHHHHHHHCC
Confidence 873 2 2355677777766 99999999999874
No 28
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=98.67 E-value=9.7e-08 Score=76.36 Aligned_cols=86 Identities=28% Similarity=0.455 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHH
Q 027047 72 DDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAIL 149 (229)
Q Consensus 72 de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~ 149 (229)
+...+..|.+..++++.| +.+|||+|...||+|+ +|.|-- ..-|..++|||..||.
T Consensus 11 ~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVE---------------------nasy~~t~CAEr~Ai~ 68 (138)
T 3dmo_A 11 HHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVE---------------------NASYGLCNCAERTALF 68 (138)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBC---------------------CSSGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeec---------------------ccccccccCHHHHHHH
Confidence 556899999999999987 6999999999999987 999961 2235558999999999
Q ss_pred HccccCCC--C-cEEEEe------CCCcHHHHHHHHHhC
Q 027047 150 NTNHASAA--G-QRLYVT------MFPCNECAKIIIQSG 179 (229)
Q Consensus 150 ~a~~~~~~--g-~tLYvT------~ePC~~Ca~ai~~sG 179 (229)
++-..... + ..+.+. ..||-.|.+.|.+.+
T Consensus 69 ~Avs~G~~~~~i~aiavv~~~~~~~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 69 SALAAGYRPGEFAAIAVVGETHGPIAPCGACRQVMIELG 107 (138)
T ss_dssp HHHHTTCCTTCEEEEEEEESCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEEEEcCCCCccCCCHHHHHHHHHhC
Confidence 87321111 1 123333 579999999999984
No 29
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=98.52 E-value=1.3e-06 Score=71.20 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCC-CceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDPN-RQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAI 148 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~~-~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai 148 (229)
..|+..+..|.++.++..--+ .+|||+|.+.||+|+ +|.|- +. |+.++|||..||
T Consensus 29 ~ed~~Li~~A~~a~~~~PyS~~f~VGAAll~~dG~i~-tG~NV----------------En-------~~~~lCAEr~Ai 84 (158)
T 3oj6_A 29 AAGQNLIDTATSVINGIPVSDFYSVASAAISDDGRVF-SGVNV----------------YH-------FNGGPCAELVVL 84 (158)
T ss_dssp HHHHHHHHHHHHHHHTSCCCSSSCEEEEEEETTSCEE-EEECC----------------CC-------TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCCCEE-EEEcc----------------cc-------CCccccHHHHHH
Confidence 346779999998877632223 799999999999988 99996 11 445789999999
Q ss_pred HHccc--cCCCCcEEEEe------CCCcHHHHHHHHHhCC
Q 027047 149 LNTNH--ASAAGQRLYVT------MFPCNECAKIIIQSGV 180 (229)
Q Consensus 149 ~~a~~--~~~~g~tLYvT------~ePC~~Ca~ai~~sGI 180 (229)
.++-. ...-...+.++ ..||-.|.+.|.+.+-
T Consensus 85 ~~Avs~G~~~~~ai~vv~~~~~~~~~PCG~CRQvL~Ef~~ 124 (158)
T 3oj6_A 85 GVAAAAGATKLTHIVAIANEGRGILSPCGRCRQVLADLHP 124 (158)
T ss_dssp HHHHHTTCCCEEEEEEEETTTTEEECCCHHHHHHHHHHST
T ss_pred HHHHHhCCCceEEEEEEeCCCCCcCCCCHHHHHHHHHhCC
Confidence 98732 11112233343 3699999999999863
No 30
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.23 E-value=3.5e-06 Score=75.07 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHH
Q 027047 70 SWDDYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNA 147 (229)
Q Consensus 70 ~~de~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~A 147 (229)
+.++..+.++...+.++++| +.+|||++...||+|+ +|.|-- ..+ ..|..++|||..|
T Consensus 51 ~~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvE----------------na~---as~~~t~CAEr~A 110 (298)
T 4eg2_A 51 EDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANME----------------FTG---AQLGQTVHAEQCA 110 (298)
T ss_dssp CHHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBC----------------CTT---SCGGGCBCHHHHH
T ss_pred CHHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEccc----------------ccc---cccCccccHHHHH
Confidence 45666677777777888886 6899999999999987 999961 111 1244478999999
Q ss_pred HHHccccCC-CCcEEEEeCCCcHHHHHHHHHhCC
Q 027047 148 ILNTNHASA-AGQRLYVTMFPCNECAKIIIQSGV 180 (229)
Q Consensus 148 i~~a~~~~~-~g~tLYvT~ePC~~Ca~ai~~sGI 180 (229)
|.++-.... .=..+.+...||-+|.+.|.+.+-
T Consensus 111 i~~Av~~G~~~i~~iav~~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 111 ISHAWMKGEKGVADITINFSPCGHCRQFMNELTT 144 (298)
T ss_dssp HHHHHHTTCSCEEEEEESSCCCHHHHHHHTTBTT
T ss_pred HHHHHhCCCCceEEEEeecCCCHHHHHHHHHhcC
Confidence 998732111 123466778999999999999864
No 31
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=97.89 E-value=4.2e-05 Score=68.15 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhcCCC--CCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHH
Q 027047 73 DYFMAIAFLSAERSKDP--NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILN 150 (229)
Q Consensus 73 e~~M~~A~~~A~~S~~~--~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~ 150 (229)
+..++.|++.++++..| +.+|||+|.++||+|. +|+|- +...|..+++||..||.+
T Consensus 193 ~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nv---------------------EnAay~~slcAEr~Al~~ 250 (298)
T 4eg2_A 193 EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYA---------------------ENAAFNPSLPPLQVALAQ 250 (298)
T ss_dssp CHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECB---------------------CCTTSTTCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEee---------------------eccccCCCCCHHHHHHHH
Confidence 34789999999999876 6899999999999976 99996 222345589999999998
Q ss_pred cc--ccC---CCCcEEEEe----CCCcHHHHHHHHHhC
Q 027047 151 TN--HAS---AAGQRLYVT----MFPCNECAKIIIQSG 179 (229)
Q Consensus 151 a~--~~~---~~g~tLYvT----~ePC~~Ca~ai~~sG 179 (229)
+- +.. .....++-. ..||..|...|.+.+
T Consensus 251 av~~G~~~~~i~aiv~v~~~~~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 251 AMMMGESFEDIEAAALVESATGKISHLADTQATLEVIN 288 (298)
T ss_dssp HHHTTCCGGGEEEEEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred HHHCCCCccCeEEEEEEeCCCCCcCCcHHHHHHHHHhC
Confidence 72 221 222222222 458999999999976
No 32
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=97.38 E-value=0.00074 Score=56.94 Aligned_cols=75 Identities=19% Similarity=0.114 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHccccCC-----CCcEEEEeCCCcHHHHHHHHHh-----CCCEEEEEee-cCCCCchhhhhHHHHHHHHC
Q 027047 140 VCHAEVNAILNTNHASA-----AGQRLYVTMFPCNECAKIIIQS-----GVSEVIYFVE-KRLNNSDVAYIASHKLLSMA 208 (229)
Q Consensus 140 ~~HAE~~Ai~~a~~~~~-----~g~tLYvT~ePC~~Ca~ai~~s-----GI~rVvy~~~-~~~~~~~~~~~~~~~~L~~~ 208 (229)
..|||+.-|.+.....+ -.-|.|+|-.||..|+..|+.. +|+=.||... +.. ++ .+-+|+..|.++
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~-~~--~~~~gLr~L~~a 154 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDD-QG--RCQEGLRTLAEA 154 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEeeccc-Cc--hHHHHHHHHHHC
Confidence 36999999987643222 2468999999999999999986 3444444433 211 12 346899999999
Q ss_pred CCeEEEech
Q 027047 209 GVKVRKHQP 217 (229)
Q Consensus 209 GV~v~~~~~ 217 (229)
|+.|..+..
T Consensus 155 G~~v~iM~~ 163 (203)
T 3v4k_A 155 GAKISIMTY 163 (203)
T ss_pred CCeEEecCH
Confidence 999998763
No 33
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=97.11 E-value=0.002 Score=53.85 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHccccCCC-----CcEEEEeCCCcHHHHHHHHHh-----CCCEEEEEeecCCCCchhhhhHHHHHHHHCC
Q 027047 140 VCHAEVNAILNTNHASAA-----GQRLYVTMFPCNECAKIIIQS-----GVSEVIYFVEKRLNNSDVAYIASHKLLSMAG 209 (229)
Q Consensus 140 ~~HAE~~Ai~~a~~~~~~-----g~tLYvT~ePC~~Ca~ai~~s-----GI~rVvy~~~~~~~~~~~~~~~~~~~L~~~G 209 (229)
..|||+.=|.......+. .-|.|+|-.||..||..|+.. +|+=.||...--. -++..+-.|+..|+++|
T Consensus 64 ~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aRLY~-~~~~~~q~gLr~L~~~G 142 (190)
T 3vow_A 64 HCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYY-FQYPCYQEGLRSLSQEG 142 (190)
T ss_dssp GGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEECTT-TTSHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHhhcCCCCCceEEEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEeccc-ccCchHHHHHHHHHHCC
Confidence 359999999876322222 268999999999999999875 6776677765221 12334568999999999
Q ss_pred CeEEEechh
Q 027047 210 VKVRKHQPQ 218 (229)
Q Consensus 210 V~v~~~~~~ 218 (229)
+.|..+.+.
T Consensus 143 ~~v~iM~~~ 151 (190)
T 3vow_A 143 VAVEIMDYE 151 (190)
T ss_dssp CEEEECCHH
T ss_pred CcEEEeChH
Confidence 999988743
No 34
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=46.90 E-value=23 Score=32.29 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=13.1
Q ss_pred cEEEEeCCCcHHHHH
Q 027047 159 QRLYVTMFPCNECAK 173 (229)
Q Consensus 159 ~tLYvT~ePC~~Ca~ 173 (229)
..||+|.-||-.++.
T Consensus 144 lhlY~S~~PCGdAsi 158 (403)
T 1zy7_A 144 FHLYISTSPCGDARI 158 (403)
T ss_dssp EEEEESSCCTTHHHH
T ss_pred EEEEeccCCCCCccc
Confidence 579999999998875
No 35
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=45.15 E-value=35 Score=27.10 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=39.9
Q ss_pred HHHHHHHccccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEE
Q 027047 144 EVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVR 213 (229)
Q Consensus 144 E~~Ai~~a~~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~ 213 (229)
.+-.+.+.... +.|+.++-..= =-.-+.+++..||+.|+-..-. -.++++|+++||++.
T Consensus 50 pL~~ll~~~~~-L~ga~vADKVV-GKAAA~Lmv~ggV~~VyA~VIS---------e~Al~lL~~~GI~v~ 108 (151)
T 1vk9_A 50 PVVELFKRFDN-LEGSLVIDKMV-GKAAASFLLKMKPDHIHAKVIS---------KPALKLMNEYGQSFS 108 (151)
T ss_dssp HHHHHHHHCSC-CTTCEEEEEEE-CHHHHHHHHHHCCSEEEEEEEE---------HHHHHHHHHTTCCEE
T ss_pred HHHHHHHhCcC-ccCCEehHHHH-hHHHHHHHHhcChheehhHHhh---------HHHHHHHHHcCCcee
Confidence 34444444444 88887775432 2346788889999997544432 368999999999986
No 36
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=37.30 E-value=55 Score=31.05 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccc-
Q 027047 75 FMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNH- 153 (229)
Q Consensus 75 ~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~- 153 (229)
=|..|....+--+. =|+++.+||..|+.|.-+.. -+|+-..|+.+|+.
T Consensus 421 DL~FAw~v~K~vKS-----NAIv~akdg~tvGiGaGQ~s--------------------------RV~s~r~A~~kA~~~ 469 (534)
T 4ehi_A 421 DLEIAMKIAAFTKS-----NNVVYVKNGAMVAIGMGMTS--------------------------RIDAAKAAIAKAKEM 469 (534)
T ss_dssp HHHHHHHHHHHSCS-----SCEEEEETTEEEEEECSSSC--------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-----ceEEEEeCCeEEEECCCCcc--------------------------hHHHHHHHHHHHHhh
Confidence 36677777665554 24555589999999987641 15889999999853
Q ss_pred -cCCCCcEEEEeC-CCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEE
Q 027047 154 -ASAAGQRLYVTM-FPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVR 213 (229)
Q Consensus 154 -~~~~g~tLYvT~-ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~ 213 (229)
..+.|+.|-.-. +|=.-|......+||+-|+=--. + ....+.++--.+.||.+.
T Consensus 470 g~~~~G~vlASDAFFPF~D~ve~Aa~aGV~aIiQPGG-----S-iRD~evI~aane~giaMv 525 (534)
T 4ehi_A 470 GLDLQGCVLASEAFFPFRDSIDEASKVGVKAIVEPGG-----S-IRDDEVVKAADEYGMALY 525 (534)
T ss_dssp TCCCTTCEEECSSCCCSTHHHHHHHHTTCCEEEECCC-----C-TTHHHHHHHHHHHTCEEE
T ss_pred ccCCCCeEEEeccccCCCccHHHHHHcCCEEEECCCC-----C-CccHHHHHHHHHcCCeEE
Confidence 357788887664 58889999999999998762221 1 112466888888899874
No 37
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=36.62 E-value=76 Score=30.03 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHcccc
Q 027047 75 FMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHA 154 (229)
Q Consensus 75 ~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~~ 154 (229)
=|..|....+--+. =|+++.+||..|+.|.-+.. -+|+-..|+.+|+ .
T Consensus 413 dL~fAw~v~K~vkS-----NAIv~akdg~tvGiGaGQ~s--------------------------RV~s~r~A~~kAg-~ 460 (523)
T 3zzm_A 413 DLVFAWRACRAVKS-----NAIVIAADGATVGVGMGQVN--------------------------RVDAARLAVERGG-E 460 (523)
T ss_dssp HHHHHHHHGGGSCS-----SCEEEEETTEEEEEECSCSS--------------------------HHHHHHHHHHHHG-G
T ss_pred HHHHHHHHHHhccC-----ceEEEEECCeEEEECCCCcc--------------------------hHHHHHHHHHHhc-c
Confidence 36667666665443 24555589999999987641 1588999999985 4
Q ss_pred CCCCcEEEEe-CCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEE
Q 027047 155 SAAGQRLYVT-MFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVR 213 (229)
Q Consensus 155 ~~~g~tLYvT-~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~ 213 (229)
.+.|+.|-.- -+|=.-|......+||+-|+=--. + ....+.++--.+.||.+.
T Consensus 461 ~~~G~vlaSDAFFPF~D~ve~aa~aGv~aIiQPGG-----S-iRD~evI~aane~giaMv 514 (523)
T 3zzm_A 461 RVRGAVAASDAFFPFPDGLETLAAAGVTAVVHPGG-----S-VRDEEVTEAAAKAGVTLY 514 (523)
T ss_dssp GCTTCEEEESSCCSSHHHHHHHHHTTCCEEEECCC-----C-TTHHHHHHHHHHHTCEEE
T ss_pred ccCCeEEEeccCcCCCccHHHHHHcCCEEEECCCC-----C-CCcHHHHHHHHHcCCeEE
Confidence 5778888766 578999999999999998762221 1 112467888888899874
No 38
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=30.94 E-value=79 Score=23.04 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=15.5
Q ss_pred CcEEEEeCCCcHHHHHHHHHhCCC
Q 027047 158 GQRLYVTMFPCNECAKIIIQSGVS 181 (229)
Q Consensus 158 g~tLYvT~ePC~~Ca~ai~~sGI~ 181 (229)
|+++.++..=+..-...|.++||+
T Consensus 65 gv~~vi~~~iG~~a~~~L~~~GI~ 88 (124)
T 1eo1_A 65 GVKAVIASSPGPNAFEVLNELGIK 88 (124)
T ss_dssp TCCEEEECCSSHHHHHHHHHHTCE
T ss_pred CCCEEEECCcCHHHHHHHHHCCCE
Confidence 566666666566666666667776
No 39
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=29.98 E-value=2.1e+02 Score=22.73 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=36.7
Q ss_pred EEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHH-HHHHHHccccCCCCcEEEEeCCCcHHHH
Q 027047 94 GACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAE-VNAILNTNHASAAGQRLYVTMFPCNECA 172 (229)
Q Consensus 94 GAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE-~~Ai~~a~~~~~~g~tLYvT~ePC~~Ca 172 (229)
...|+ ++|+|+....+..+ .+.|.. ..|++ +.............-+||++ .-|+.|.
T Consensus 127 ~t~li-~~G~i~~~~~~~~~---------------~~~~~~-----~~~~~~il~~l~~~~i~~~~i~ly~~-~~Cp~C~ 184 (241)
T 1nm3_A 127 YSMLV-KNGVVEKMFIEPNE---------------PGDPFK-----VSDADTMLKYLAPQHQVQESISIFTK-PGCPFCA 184 (241)
T ss_dssp EEEEE-ETTEEEEEEECCSC---------------SSCCCS-----SSSHHHHHHHHCTTSCCCCCEEEEEC-SSCHHHH
T ss_pred EEEEE-ECCEEEEEEEeccC---------------CCccce-----ecCHHHHHHHhhhhccccceEEEEEC-CCChHHH
Confidence 46777 89999887665421 111100 12443 32222221222334667765 5699998
Q ss_pred HHHHH---hCCCEEE
Q 027047 173 KIIIQ---SGVSEVI 184 (229)
Q Consensus 173 ~ai~~---sGI~rVv 184 (229)
++... .||.-..
T Consensus 185 ~a~~~L~~~~i~~~~ 199 (241)
T 1nm3_A 185 KAKQLLHDKGLSFEE 199 (241)
T ss_dssp HHHHHHHHHTCCCEE
T ss_pred HHHHHHHHcCCceEE
Confidence 87654 4776433
No 40
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=27.18 E-value=1.8e+02 Score=21.23 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=35.2
Q ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEe
Q 027047 161 LYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKH 215 (229)
Q Consensus 161 LYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~ 215 (229)
||.+..|-..-...|...||+.||-..++... ....++++..|++...+
T Consensus 15 l~~s~~~~~~d~~~L~~~gi~~Vi~l~~~~e~------~~~~~~~~~~gi~~~~i 63 (151)
T 1xri_A 15 IFRSGFPDSANFSFLQTLGLRSIIYLCPEPYP------ESNLQFLKSNGIRLFQF 63 (151)
T ss_dssp EEEESCCCHHHHHHHHHHTCSEEEECCSSCCC------HHHHHHHHHHTCEEEEC
T ss_pred eEECCCcCccCHHHHHHCCCCEEEECCCCCcC------hhHHHHHHhcCCeEEec
Confidence 89999998888888888999998877664321 11235667778887654
No 41
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=25.30 E-value=88 Score=23.55 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=6.7
Q ss_pred HHHHHHHCCCeEEE
Q 027047 201 SHKLLSMAGVKVRK 214 (229)
Q Consensus 201 ~~~~L~~~GV~v~~ 214 (229)
..+.|+++||+|..
T Consensus 89 a~~~L~~~GI~v~~ 102 (136)
T 1o13_A 89 AIAAFEAMGVKVIK 102 (136)
T ss_dssp HHHHHHHTTCEEEC
T ss_pred HHHHHHHCCCEEEe
Confidence 34455555555443
No 42
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=24.77 E-value=1e+02 Score=22.30 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=11.8
Q ss_pred CcEEEEeCCCcHHHHHHHHHhCCC
Q 027047 158 GQRLYVTMFPCNECAKIIIQSGVS 181 (229)
Q Consensus 158 g~tLYvT~ePC~~Ca~ai~~sGI~ 181 (229)
|+++.++..=+..-...|.++||+
T Consensus 63 gv~~vi~~~iG~~a~~~L~~~GI~ 86 (121)
T 2yx6_A 63 GAKIVLTYGIGRRAIEYFNSLGIS 86 (121)
T ss_dssp TCCEEECSBCCHHHHHHHHHTTCE
T ss_pred CCCEEEECCCCHhHHHHHHHCCCE
Confidence 444444444444444455555555
No 43
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=24.13 E-value=2.3e+02 Score=21.28 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=37.0
Q ss_pred EEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEe
Q 027047 160 RLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKH 215 (229)
Q Consensus 160 tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~ 215 (229)
.||++..|-...+..|...|++-|+....+.... . .....+.+++.|+++..+
T Consensus 21 ~l~~s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~-~--~~~~~~~~~~~G~~~~~i 73 (157)
T 3gxh_A 21 QLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKD-A--HPDEGKLVTQAGMDYVYI 73 (157)
T ss_dssp TEEEEBCCCHHHHHHHHHTTCCEEEECSCTTSTT-S--CTTHHHHHHHTTCEEEEC
T ss_pred ceeEcCCCCHHHHHHHHHcCCCEEEECCCccccc-c--cccHHHHHHHcCCeEEEe
Confidence 4899999999999999999999877654432111 0 012356778889887654
No 44
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=23.89 E-value=2.7e+02 Score=25.87 Aligned_cols=100 Identities=23% Similarity=0.302 Sum_probs=69.7
Q ss_pred HHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccccC
Q 027047 76 MAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHAS 155 (229)
Q Consensus 76 M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~~~ 155 (229)
|..|...++--+. =|+++-+||..|+.|.-+.. -+|+-..|+.+|+. .
T Consensus 355 L~FAwkv~K~vKS-----NAIv~akdg~tvGiGaGQ~s--------------------------RV~s~riA~~kA~~-~ 402 (464)
T 1zcz_A 355 LEFAYRVVEGAKS-----NAVLIAKDGVTVGIGSGQPS--------------------------RKRAAWIATVMAGE-K 402 (464)
T ss_dssp HHHHHHHHHHSCS-----SCEEEEETTEEEEEECSCSS--------------------------HHHHHHHHHHHHGG-G
T ss_pred HHHHHHHHhhccc-----ceEEEEeCCeEEEECCCCCc--------------------------hHHHHHHHHHHhhc-c
Confidence 5566666665443 24555589999999987641 15888899998853 3
Q ss_pred CCCcEEEEe-CCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEE
Q 027047 156 AAGQRLYVT-MFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVR 213 (229)
Q Consensus 156 ~~g~tLYvT-~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~ 213 (229)
..|+.|-.- -+|=.-|......+||+-|+=--. + ....+.++.-.+.||.+.
T Consensus 403 ~~G~vlASDAFFPF~D~v~~aa~aGv~aIiQPGG-----S-iRD~evI~aane~giaMv 455 (464)
T 1zcz_A 403 AKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLG-----S-IRDEEVIEKARELGITFY 455 (464)
T ss_dssp GTTCEEEESSCCSSHHHHHHHHHTTCCEEEECCC-----C-TTHHHHHHHHHHHTCEEE
T ss_pred cCCeEEEecccCCchhhHHHHHHhCCeEEEcCCC-----C-cCcHHHHHHHHHcCCeEE
Confidence 367776655 478999999999999998763221 1 112467888888998874
Done!