Query 027048
Match_columns 229
No_of_seqs 240 out of 1768
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eld_A MJ16.5-P1, small heat s 100.0 4.4E-28 1.5E-32 198.1 13.3 106 117-229 55-161 (161)
2 1gme_A Heat shock protein 16.9 99.9 2E-27 6.9E-32 192.6 12.7 108 116-229 41-150 (151)
3 3gla_A Low molecular weight he 99.9 1.1E-26 3.9E-31 175.1 15.0 98 116-219 2-99 (100)
4 3aab_A Putative uncharacterize 99.9 1.6E-27 5.5E-32 186.6 9.9 115 83-220 2-118 (123)
5 4fei_A Heat shock protein-rela 99.9 5.2E-26 1.8E-30 172.6 13.6 94 116-220 4-97 (102)
6 3l1e_A Alpha-crystallin A chai 99.9 1.3E-23 4.3E-28 160.8 14.6 97 120-229 4-105 (106)
7 2wj5_A Heat shock protein beta 99.9 3.8E-23 1.3E-27 156.8 12.1 95 120-227 3-99 (101)
8 3q9p_A Heat shock protein beta 99.9 1.9E-22 6.4E-27 148.4 11.4 83 123-218 2-85 (85)
9 2klr_A Alpha-crystallin B chai 99.9 1E-22 3.5E-27 168.8 11.1 96 120-228 65-161 (175)
10 2bol_A TSP36, small heat shock 99.9 2.7E-22 9.1E-27 179.9 13.4 97 117-227 97-198 (314)
11 2y1y_A Alpha-crystallin B chai 99.9 6.1E-21 2.1E-25 141.6 11.9 84 124-220 2-86 (90)
12 2bol_A TSP36, small heat shock 99.8 1.1E-19 3.9E-24 162.9 11.4 91 118-218 220-314 (314)
13 1rl1_A Suppressor of G2 allele 99.0 1.9E-09 6.6E-14 82.2 9.7 82 117-219 8-89 (114)
14 2xcm_C SGT1-like protein, cyto 99.0 2.3E-09 7.9E-14 78.4 8.7 81 118-219 2-82 (92)
15 3igf_A ALL4481 protein; two-do 98.3 2.7E-06 9.3E-11 77.6 9.0 72 118-217 297-369 (374)
16 3eud_A Protein SHQ1; CS domain 98.2 1.8E-05 6.3E-10 60.5 11.7 79 116-220 15-98 (115)
17 2k8q_A Protein SHQ1; beta-sand 98.2 1.7E-06 5.9E-11 68.2 5.5 76 118-219 3-83 (134)
18 1x5m_A Calcyclin-binding prote 97.8 0.00039 1.3E-08 53.7 11.7 81 118-219 20-104 (127)
19 1wh0_A Ubiquitin carboxyl-term 97.7 0.00032 1.1E-08 55.1 9.9 91 117-219 18-112 (134)
20 1wfi_A Nuclear distribution ge 97.7 0.00035 1.2E-08 54.3 10.1 79 117-219 6-88 (131)
21 1wgv_A KIAA1068 protein; CS do 97.7 0.00087 3E-08 51.5 12.2 83 116-219 17-102 (124)
22 3qor_A Nuclear migration prote 97.6 0.00056 1.9E-08 52.5 10.0 80 116-219 14-97 (121)
23 1ejf_A Progesterone receptor P 97.5 0.0007 2.4E-08 52.2 9.9 78 120-219 5-82 (125)
24 2o30_A Nuclear movement protei 97.4 0.001 3.5E-08 51.7 9.9 76 118-218 4-80 (131)
25 2rh0_A NUDC domain-containing 97.3 0.003 1E-07 50.7 11.5 78 117-219 12-91 (157)
26 2kmw_A Uncharacterized protein 97.0 0.0025 8.7E-08 50.8 8.4 78 118-219 4-82 (150)
27 2cg9_X CO-chaperone protein SB 96.8 0.00057 2E-08 53.5 2.9 84 118-218 6-97 (134)
28 3q9p_A Heat shock protein beta 77.3 5.3 0.00018 27.9 5.6 34 184-218 7-40 (85)
29 3gla_A Low molecular weight he 71.9 7.3 0.00025 27.7 5.3 33 128-160 64-97 (100)
30 4fei_A Heat shock protein-rela 71.4 8.7 0.0003 27.6 5.7 33 129-161 62-95 (102)
31 2cql_A OK/SW-CL.103, 60S ribos 70.5 6 0.00021 28.9 4.6 19 141-159 20-38 (100)
32 2y1y_A Alpha-crystallin B chai 69.5 6.7 0.00023 27.5 4.6 32 185-217 7-38 (90)
33 2nwt_A UPF0165 protein AF_2212 67.6 5.1 0.00017 27.6 3.4 30 199-228 3-32 (69)
34 3l1e_A Alpha-crystallin A chai 67.4 9.1 0.00031 27.8 5.0 33 184-217 12-44 (106)
35 4eld_A MJ16.5-P1, small heat s 66.1 11 0.00039 29.3 5.7 33 129-161 118-151 (161)
36 2wj5_A Heat shock protein beta 65.1 8.7 0.0003 27.6 4.5 33 185-218 12-44 (101)
37 3aab_A Putative uncharacterize 64.8 14 0.00046 27.4 5.7 35 184-219 34-69 (123)
38 1rl6_A Protein (ribosomal prot 63.8 12 0.00043 30.1 5.6 46 141-217 11-56 (177)
39 1nkw_E 50S ribosomal protein L 63.0 15 0.00052 30.5 6.1 46 141-217 39-84 (212)
40 1gme_A Heat shock protein 16.9 59.8 17 0.00057 28.1 5.6 33 129-161 105-138 (151)
41 1vq8_E 50S ribosomal protein L 58.3 17 0.00057 29.4 5.4 47 141-217 9-55 (178)
42 3j21_F 50S ribosomal protein L 55.7 14 0.00048 30.0 4.6 50 132-215 9-58 (184)
43 2klr_A Alpha-crystallin B chai 50.2 20 0.00067 28.7 4.6 33 185-218 74-106 (175)
44 3iz5_F 60S ribosomal protein L 49.0 30 0.001 28.1 5.6 46 141-216 13-60 (190)
45 3v2d_H 50S ribosomal protein L 47.8 29 0.00099 27.9 5.3 44 141-215 12-55 (180)
46 3u5e_H L8, RP24, YL11, 60S rib 45.3 39 0.0014 27.4 5.8 46 141-216 13-59 (191)
47 3oeq_A Frataxin homolog, mitoc 45.1 26 0.00089 26.6 4.3 17 200-216 48-64 (123)
48 1rl1_A Suppressor of G2 allele 40.5 36 0.0012 24.5 4.4 34 127-160 53-87 (114)
49 1ew4_A CYAY protein; friedreic 40.3 21 0.00072 26.2 3.1 17 200-216 29-45 (106)
50 4a17_E RPL9, 60S ribosomal pro 40.0 26 0.00087 28.5 3.8 19 141-159 13-31 (188)
51 2zkr_e 60S ribosomal protein L 39.3 33 0.0011 27.9 4.4 47 141-217 13-62 (192)
52 3bbo_I Ribosomal protein L6; l 37.4 9.4 0.00032 32.0 0.8 46 141-217 54-100 (223)
53 2o30_A Nuclear movement protei 33.7 1E+02 0.0035 22.8 6.2 41 174-215 5-45 (131)
54 3qqz_A Putative uncharacterize 29.7 1.9E+02 0.0066 23.9 7.8 69 130-213 13-86 (255)
55 2uwa_A Cellulase; glycoside hy 28.3 1E+02 0.0036 26.0 6.0 43 140-195 31-74 (274)
56 1n91_A ORF, hypothetical prote 27.5 84 0.0029 23.1 4.5 37 123-160 8-45 (108)
57 3r8s_G 50S ribosomal protein L 27.2 22 0.00076 28.5 1.4 43 141-214 11-53 (176)
58 4awd_A Beta-porphyranase; hydr 26.1 1E+02 0.0036 26.8 5.7 51 140-195 85-145 (324)
59 1wgv_A KIAA1068 protein; CS do 25.7 1.6E+02 0.0055 21.4 6.0 40 175-215 21-61 (124)
60 3jx8_A Putative lipoprotein; s 25.7 70 0.0024 26.3 4.3 39 121-159 34-72 (250)
61 2rh0_A NUDC domain-containing 24.8 1.7E+02 0.0058 22.5 6.2 41 174-215 14-54 (157)
62 2bzw_B BCL2-antagonist of cell 23.7 48 0.0016 18.3 1.8 14 80-93 13-26 (27)
63 2ks0_A Uncharacterized protein 22.4 43 0.0015 22.9 1.9 22 139-160 18-39 (71)
64 2kgs_A Uncharacterized protein 21.5 72 0.0025 23.9 3.3 26 136-161 2-27 (132)
65 3t3l_A Frataxin, mitochondrial 21.4 56 0.0019 24.8 2.6 17 199-215 40-56 (129)
66 3qor_A Nuclear migration prote 20.5 2.5E+02 0.0086 20.3 6.1 42 174-216 17-60 (121)
No 1
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=99.95 E-value=4.4e-28 Score=198.10 Aligned_cols=106 Identities=25% Similarity=0.356 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeee-eeeEEEEEEECCCC
Q 027048 117 GRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTN-GYGSYNTRIALPDN 195 (229)
Q Consensus 117 ~~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er-~~g~f~r~i~LP~~ 195 (229)
..+|+||+|++++|+|.++|||++++||+|+++++.|+|+|+++..... ++..++.+|+ .+|.|.|+|.||.+
T Consensus 55 ~~~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~------~~~~~~~~Er~~~g~f~R~~~LP~~ 128 (161)
T 4eld_A 55 GFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMIT------ESERIIYSEIPEEEEIYRTIKLPAT 128 (161)
T ss_dssp SCCCEEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCC------SSCEEEEECSCCCCEEEEEEECSSC
T ss_pred cccceeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccC------CCceEEEEEeeccccEEEEEECCCC
Confidence 3455999999999999999999999999999999999999998754322 3467888999 99999999999999
Q ss_pred cccCceEEEEeCCEEEEEEeccCCCCCcEEeecC
Q 027048 196 IEFEKIKAEVKDGVLYITIPKASSTAKIVDINVQ 229 (229)
Q Consensus 196 vd~~~I~A~~~nGvL~ItlPK~~~~~k~i~I~Iq 229 (229)
||.++|+|+|+||||+|+|||.+.. +...|+||
T Consensus 129 vd~~~i~A~~~nGvL~I~lpK~~~~-~~r~I~Ie 161 (161)
T 4eld_A 129 VKEENASAKFENGVLSVILPKAESS-IKKGINIE 161 (161)
T ss_dssp BCGGGCEEEEETTEEEEEEEBCGGG-SCCCCCCC
T ss_pred cccccEEEEEECCEEEEEEEcCCCC-CCcEeecC
Confidence 9999999999999999999998753 44555554
No 2
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=99.95 E-value=2e-27 Score=192.59 Aligned_cols=108 Identities=26% Similarity=0.466 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCCEEEEEEecCCCcccceEEEEE-CCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCC
Q 027048 116 RGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVE-ESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPD 194 (229)
Q Consensus 116 ~~~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~ 194 (229)
.+.|++||+|++++|+|.++|||++++||+|.++ ++.|+|+|+++...+ +++..++..|+.+|.|.|+|.||.
T Consensus 41 ~~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~------~~~~~~~~~Er~~g~F~R~~~LP~ 114 (151)
T 1gme_A 41 FANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKE------DKNDKWHRVERSSGKFVRRFRLLE 114 (151)
T ss_dssp HGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCC------CTTCEEEECCCCCCCEEEEEECSS
T ss_pred ccCCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccc------cCCceEEEEeEeccEEEEEEECCC
Confidence 3568999999999999999999999999999995 689999998865432 235678889999999999999999
Q ss_pred CcccCceEEEEeCCEEEEEEeccCCC-CCcEEeecC
Q 027048 195 NIEFEKIKAEVKDGVLYITIPKASST-AKIVDINVQ 229 (229)
Q Consensus 195 ~vd~~~I~A~~~nGvL~ItlPK~~~~-~k~i~I~Iq 229 (229)
+||.++|+|+|+||||+|++||.+.. ++.+.|+|+
T Consensus 115 ~vd~~~i~A~~~nGvL~I~lPK~~~~~~~~~~I~I~ 150 (151)
T 1gme_A 115 DAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 150 (151)
T ss_dssp CCCGGGCEEEEETTEEEEEEECCCCCTTCCCCCCCC
T ss_pred CccccceEEEEECCEEEEEEEccCcCCCCCeEeeeC
Confidence 99999999999999999999998764 456777775
No 3
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=99.95 E-value=1.1e-26 Score=175.10 Aligned_cols=98 Identities=29% Similarity=0.508 Sum_probs=88.8
Q ss_pred CCCCCeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCC
Q 027048 116 RGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDN 195 (229)
Q Consensus 116 ~~~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~ 195 (229)
.|.|++||+|++++|+|.++|||++++||+|+++++.|+|+|+++..... +...++.+|+.+|.|.|+|.||.+
T Consensus 2 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~------~~~~~~~~er~~g~f~r~~~LP~~ 75 (100)
T 3gla_A 2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESST------ETERFSRIERRYGSFHRRFALPDS 75 (100)
T ss_dssp CSCCCEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGS------SGGGEEEECCCCEEEEEEEECCTT
T ss_pred CccCcEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCcc------CCccEEEEeecceEEEEEEECCCC
Confidence 46899999999999999999999999999999999999999998764432 356788899999999999999999
Q ss_pred cccCceEEEEeCCEEEEEEeccCC
Q 027048 196 IEFEKIKAEVKDGVLYITIPKASS 219 (229)
Q Consensus 196 vd~~~I~A~~~nGvL~ItlPK~~~ 219 (229)
||.++|+|+|+||||+|++||.++
T Consensus 76 vd~~~i~A~~~~GvL~I~~pK~~~ 99 (100)
T 3gla_A 76 ADADGITAAGRNGVLEIRIPKRPA 99 (100)
T ss_dssp BCTTSCEEEEETTEEEEEEEBC--
T ss_pred cChHHeEEEEeCCEEEEEEecCCC
Confidence 999999999999999999999864
No 4
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=99.94 E-value=1.6e-27 Score=186.62 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCcccCCCCCCcccccccccccCCCCCeEEEEcCCEEEEEEecCCCcccceEEEEEC-CEEEEEEEEec
Q 027048 83 QQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEE-SMLVIKAEKAQ 161 (229)
Q Consensus 83 ~~m~~~mdrlfe~~~~~~~~~~~~~~~~~~~~~~~~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~-~~L~I~g~~~~ 161 (229)
+.|+++|+++|+++..... ..+.|++||+|++++|+|.++|||++++||+|++++ +.|+|+|+++.
T Consensus 2 ~~~~~em~~~~~~~~~~~~-------------~~~~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~ 68 (123)
T 3aab_A 2 YYLGKELQKRSEELSRGFY-------------ELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREI 68 (123)
T ss_dssp ------------CCCHHHH-------------HHHCSCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCC
T ss_pred hhHHHHHHHHHHHHhhhcc-------------ccCCCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEec
Confidence 4567789999988653211 123589999999999999999999999999999999 99999999864
Q ss_pred ccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCce-EEEEeCCEEEEEEeccCCC
Q 027048 162 RNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKI-KAEVKDGVLYITIPKASST 220 (229)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I-~A~~~nGvL~ItlPK~~~~ 220 (229)
.. ++.++.+|+.+ +|.|+|.||.+||.++| +|.|+||||+|++||.+..
T Consensus 69 ~~---------~~~~~~~Er~~-~f~R~~~LP~~vd~~~i~~A~~~~GvL~I~lPK~~~~ 118 (123)
T 3aab_A 69 TE---------PGVKYLTQRPK-YVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTS 118 (123)
T ss_dssp CC---------CSCEEEECSCS-EEEEEEECSSEECTTCCCEEEEETTEEEEEEEGGGEE
T ss_pred cC---------CCeEEEEEEeE-EEEEEEECCCCcCcchhCeeEEcCCEEEEEEEcCCCC
Confidence 32 36788999999 99999999999999999 9999999999999998753
No 5
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=99.94 E-value=5.2e-26 Score=172.62 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=87.7
Q ss_pred CCCCCeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCC
Q 027048 116 RGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDN 195 (229)
Q Consensus 116 ~~~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~ 195 (229)
.+.|++||+|++++|+|.++|||++++||+|+++++.|+|+|+++. +..++.+|+.+|.|.|+|.||.+
T Consensus 4 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~-----------~~~~~~~er~~g~f~R~~~LP~~ 72 (102)
T 4fei_A 4 PWTPAADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPG-----------TEHLLRSERPSGRFVRELAFPEP 72 (102)
T ss_dssp ECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECC-----------CSSCSSCCSEEEEEEEEEECSSC
T ss_pred cccCcEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEec-----------CCCEEEEEEeccEEEEEEECCCC
Confidence 4689999999999999999999999999999999999999999842 35778889999999999999999
Q ss_pred cccCceEEEEeCCEEEEEEeccCCC
Q 027048 196 IEFEKIKAEVKDGVLYITIPKASST 220 (229)
Q Consensus 196 vd~~~I~A~~~nGvL~ItlPK~~~~ 220 (229)
||.++|+|+|+||||+|++||.++.
T Consensus 73 vd~~~i~A~~~~GvL~I~lpK~~~~ 97 (102)
T 4fei_A 73 VRPASGVASLAGGVLTVRFEKLRPT 97 (102)
T ss_dssp BCTTCCEEEEETTEEEEEEEBSSCC
T ss_pred cchhHcEEEEECCEEEEEEEccCcc
Confidence 9999999999999999999998863
No 6
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=99.91 E-value=1.3e-23 Score=160.80 Aligned_cols=97 Identities=23% Similarity=0.375 Sum_probs=82.6
Q ss_pred CeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccC
Q 027048 120 PWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFE 199 (229)
Q Consensus 120 ~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
..||+|++++|+|.++|||++++||+|.++++.|+|+|+++.... +.++.. +.|.|+|.||.+||.+
T Consensus 4 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~--------~~~~~~-----~eF~R~~~LP~~vd~~ 70 (106)
T 3l1e_A 4 ISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQD--------DHGYIS-----REFHRRYRLPSNVDQS 70 (106)
T ss_dssp SEEEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEET--------TTEEEE-----EEEEEEEECCTTBCTT
T ss_pred ceEEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccC--------CCCEEE-----EEEEEEEECCCCcChh
Confidence 579999999999999999999999999999999999998754321 233333 3599999999999999
Q ss_pred ceEEEE-eCCEEEEEEeccCCC----CCcEEeecC
Q 027048 200 KIKAEV-KDGVLYITIPKASST----AKIVDINVQ 229 (229)
Q Consensus 200 ~I~A~~-~nGvL~ItlPK~~~~----~k~i~I~Iq 229 (229)
+|+|.| +||||+|++||.+.. .+.+.|+|+
T Consensus 71 ~i~A~~s~~GvL~I~~PK~~~~~~~~~~~r~I~I~ 105 (106)
T 3l1e_A 71 ALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105 (106)
T ss_dssp SCEEEECTTSEEEEEEEBCCCCTTTTSSSCCCCCC
T ss_pred HcEEEECCCCEEEEEEEccCcccccCCCCeEeeec
Confidence 999999 899999999998864 366677764
No 7
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=99.90 E-value=3.8e-23 Score=156.76 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=79.7
Q ss_pred CeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccC
Q 027048 120 PWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFE 199 (229)
Q Consensus 120 ~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
.+||+|++++|+|.++|||++++||+|+++++.|+|+|+++... ++.++..+| |.|+|.||.+||.+
T Consensus 3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~--------~~~~~~~~e-----F~R~~~LP~~vd~~ 69 (101)
T 2wj5_A 3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERP--------DEHGFIARE-----FHRRYRLPPGVDPA 69 (101)
T ss_dssp CCCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECS--------STTCCEEEE-----EEEEEECCTTBCTT
T ss_pred cEEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEeccc--------CCCCEEEEE-----EEEEEECCCCcChh
Confidence 47999999999999999999999999999999999999986432 124454443 99999999999999
Q ss_pred ceEEEE-eCCEEEEEEeccCCC-CCcEEee
Q 027048 200 KIKAEV-KDGVLYITIPKASST-AKIVDIN 227 (229)
Q Consensus 200 ~I~A~~-~nGvL~ItlPK~~~~-~k~i~I~ 227 (229)
+|+|.| +||+|+|++||.+.. ++++.|.
T Consensus 70 ~i~A~~s~nGvL~I~lPK~~~~~~~~~~i~ 99 (101)
T 2wj5_A 70 AVTSALSPEGVLSIQATPASAQASLPSPPA 99 (101)
T ss_dssp CCEEEECTTSEEEEEECBCCCCCSSCC---
T ss_pred HCEEEECCCCEEEEEEECCCcCCCCCCccc
Confidence 999999 899999999998754 4555553
No 8
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=99.88 E-value=1.9e-22 Score=148.40 Aligned_cols=83 Identities=14% Similarity=0.374 Sum_probs=70.5
Q ss_pred EEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceE
Q 027048 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIK 202 (229)
Q Consensus 123 I~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~ 202 (229)
+.|++++|+|.++|||++++||+|.++++.|+|+|+++.... +.+ ..+|+|.|+|.||++||.++|+
T Consensus 2 ~~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~--------~~~-----~~~~~F~R~~~LP~~vd~~~i~ 68 (85)
T 3q9p_A 2 GSHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQD--------EHG-----YISRCFTRKYTLPPGVDPTQVS 68 (85)
T ss_dssp -CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC--------------------CCCEEEEEEEECCTTCCGGGCE
T ss_pred ccCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccC--------CCC-----EEEEEEEEEEECCCCcChHHcE
Confidence 458999999999999999999999999999999999864321 111 2468999999999999999999
Q ss_pred EEEe-CCEEEEEEeccC
Q 027048 203 AEVK-DGVLYITIPKAS 218 (229)
Q Consensus 203 A~~~-nGvL~ItlPK~~ 218 (229)
|.|+ ||||+|++||.+
T Consensus 69 A~~~~~GvL~I~lPK~k 85 (85)
T 3q9p_A 69 SSLSPEGTLTVEAPMPK 85 (85)
T ss_dssp EEECTTSEEEEEEECCC
T ss_pred EEECCCCEEEEEEEcCC
Confidence 9998 999999999964
No 9
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=99.88 E-value=1e-22 Score=168.80 Aligned_cols=96 Identities=16% Similarity=0.334 Sum_probs=72.1
Q ss_pred CeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccC
Q 027048 120 PWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFE 199 (229)
Q Consensus 120 ~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
.+||+|++++|+|.+||||+++|||+|+++++.|+|+|+++...+ +.++..+ .|.|+|.||++||.+
T Consensus 65 ~~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~--------~~~~~~r-----eF~R~~~LP~~Vd~~ 131 (175)
T 2klr_A 65 LSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQD--------EHGFISR-----EFHRKYRIPADVDPL 131 (175)
T ss_dssp ----CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEE--------TTEEEEE-----EEEEEEECTTTCCTT
T ss_pred ceEEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEccccc--------CCceEEE-----EEEEEEECCCCcChh
Confidence 479999999999999999999999999999999999999864321 2344433 499999999999999
Q ss_pred ceEEEE-eCCEEEEEEeccCCCCCcEEeec
Q 027048 200 KIKAEV-KDGVLYITIPKASSTAKIVDINV 228 (229)
Q Consensus 200 ~I~A~~-~nGvL~ItlPK~~~~~k~i~I~I 228 (229)
+|+|+| +||||+|++||.+...+.+.|+|
T Consensus 132 ~i~A~~s~dGvL~I~lPK~~~~~~~r~I~I 161 (175)
T 2klr_A 132 TITSSLSSDGVLTVNGPRKQVSGPERTIPI 161 (175)
T ss_dssp TCEEEECTTSCEEEEEECC-----------
T ss_pred HeEEEEcCCCEEEEEEECCCCCCCCeEEEE
Confidence 999999 89999999999875432344444
No 10
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.88 E-value=2.7e-22 Score=179.94 Aligned_cols=97 Identities=21% Similarity=0.345 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCC----EEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEEC
Q 027048 117 GRTPWAIRETEN----DYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIAL 192 (229)
Q Consensus 117 ~~p~~dI~E~~~----~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~L 192 (229)
+.|++||+|+++ +|+|.++|||++++||+|.++++.|+|+|+++...+ + ++.+|+|.|+|.|
T Consensus 97 ~~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e--------~------~r~~g~F~R~~~L 162 (314)
T 2bol_A 97 LDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACG--------D------AAMSESVGRSIPL 162 (314)
T ss_dssp TGGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTT--------C------CCBCCCEEEEEEC
T ss_pred CCCccceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCC--------C------CEEEEEEEEEEEC
Confidence 568999999999 999999999999999999999999999998863211 1 2788999999999
Q ss_pred CCCcccCceEEEEe-CCEEEEEEeccCCCCCcEEee
Q 027048 193 PDNIEFEKIKAEVK-DGVLYITIPKASSTAKIVDIN 227 (229)
Q Consensus 193 P~~vd~~~I~A~~~-nGvL~ItlPK~~~~~k~i~I~ 227 (229)
|++||.++|+|+|+ ||||+|++||.++..+.|.|.
T Consensus 163 P~~Vd~e~i~A~~~~nGVL~I~lPK~~~~~~~I~it 198 (314)
T 2bol_A 163 PPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLS 198 (314)
T ss_dssp CTTBCGGGCEEEECSSSEEEEEEEBSSCCTTTEEEE
T ss_pred CCCccccccEEEEeCCCEEEEEEeccCcccceeecc
Confidence 99999999999999 999999999998776666653
No 11
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=99.85 E-value=6.1e-21 Score=141.56 Aligned_cols=84 Identities=15% Similarity=0.370 Sum_probs=68.2
Q ss_pred EEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEE
Q 027048 124 RETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKA 203 (229)
Q Consensus 124 ~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A 203 (229)
.+++++|+|.++|||++++||+|.++++.|+|+|+++...+ +..++.+ .|.|+|.||.+||.++|+|
T Consensus 2 k~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~--------~~~~~~~-----ef~R~~~LP~~vd~~~i~A 68 (90)
T 2y1y_A 2 AMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQD--------EHGFISR-----EFHRKYRIPADVDPLTITS 68 (90)
T ss_dssp ----CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEEC--------SSSEEEE-----EEEEEEECCTTBCGGGCEE
T ss_pred CcCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccC--------CCCEEEE-----EEEEEEECCCCcChhHcEE
Confidence 36789999999999999999999999999999999865321 2344433 4999999999999999999
Q ss_pred EE-eCCEEEEEEeccCCC
Q 027048 204 EV-KDGVLYITIPKASST 220 (229)
Q Consensus 204 ~~-~nGvL~ItlPK~~~~ 220 (229)
.| +||||+|++||.+..
T Consensus 69 ~~~~~GvL~I~~pK~~~~ 86 (90)
T 2y1y_A 69 SMSSDGVLTVNGPRKQVS 86 (90)
T ss_dssp EECTTSEEEEEECBC---
T ss_pred EECCCCEEEEEEEcCCCC
Confidence 99 899999999998753
No 12
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.80 E-value=1.1e-19 Score=162.85 Aligned_cols=91 Identities=18% Similarity=0.329 Sum_probs=72.5
Q ss_pred CCCeEEEEcC---CEEEEEEec-CCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECC
Q 027048 118 RTPWAIRETE---NDYKIRFDV-PGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALP 193 (229)
Q Consensus 118 ~p~~dI~E~~---~~y~i~~dL-PG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP 193 (229)
...++|.+++ +.|+|.++| ||++++||+|++++|.|+|+|+++.+. ..++.+|++||.|.|+|.||
T Consensus 220 ~~~~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~----------~~~~~~Er~~g~F~R~~~LP 289 (314)
T 2bol_A 220 KEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEE----------KTENASHSEHREFYKAFVTP 289 (314)
T ss_dssp CCEEEEEECTTSCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC----------------------CEEEEEEEECS
T ss_pred CCCCcEEEecCCCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccC----------CceEEEEEeeeEEEEEEECC
Confidence 3446777755 589999999 999999999999999999999986421 24677899999999999999
Q ss_pred CCcccCceEEEEeCCEEEEEEeccC
Q 027048 194 DNIEFEKIKAEVKDGVLYITIPKAS 218 (229)
Q Consensus 194 ~~vd~~~I~A~~~nGvL~ItlPK~~ 218 (229)
++||.++|+|+|+||||+|++||.+
T Consensus 290 ~~vd~~~i~A~~~dGvL~i~~Pk~~ 314 (314)
T 2bol_A 290 EVVDASKTQAEIVDGLMVVEAPLFK 314 (314)
T ss_dssp SEECGGGCEEEEETTEEEEEEEEEC
T ss_pred CCcChHHeEEEEeCCEEEEEEecCC
Confidence 9999999999999999999999964
No 13
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=99.00 E-value=1.9e-09 Score=82.17 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCc
Q 027048 117 GRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI 196 (229)
Q Consensus 117 ~~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v 196 (229)
..+.++++++++.+.|.+++||+.+++++|.++++.|.|++.... + ..|...+.|+..|
T Consensus 8 ~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~------------~---------~~y~~~~~L~~~I 66 (114)
T 1rl1_A 8 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPS------------G---------EDYNLKLELLHPI 66 (114)
T ss_dssp CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTT------------S---------SEEEEEECBSSCC
T ss_pred CCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCC------------C---------cEEEEEeeCCCcC
Confidence 456799999999999999999999999999999999999985420 0 3578889999999
Q ss_pred ccCceEEEEeCCEEEEEEeccCC
Q 027048 197 EFEKIKAEVKDGVLYITIPKASS 219 (229)
Q Consensus 197 d~~~I~A~~~nGvL~ItlPK~~~ 219 (229)
+.+..++.+.+|.|.|+|+|.+.
T Consensus 67 ~~e~s~~~~~~~~l~i~L~K~~~ 89 (114)
T 1rl1_A 67 IPEQSTFKVLSTKIEIKLKKPEA 89 (114)
T ss_dssp CGGGEEEEECSSSEEEEEECSSC
T ss_pred CccccEEEEECCEEEEEEEcCCC
Confidence 99999999999999999999864
No 14
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=98.97 E-value=2.3e-09 Score=78.39 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcc
Q 027048 118 RTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIE 197 (229)
Q Consensus 118 ~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd 197 (229)
.+.++++++++.+.|.+.+||+.+++++|.++++.|.|++.... + ..|...+.|+..|+
T Consensus 2 ~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~------------~---------~~y~~~~~L~~~I~ 60 (92)
T 2xcm_C 2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPG------------E---------DAYYLQPRLFGKII 60 (92)
T ss_dssp CSEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTT------------S---------CCEEECCBBSSCBC
T ss_pred CccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCC------------C---------cEEEEeeEcCCccC
Confidence 46789999999999999999999999999999999999984310 0 24778899999999
Q ss_pred cCceEEEEeCCEEEEEEeccCC
Q 027048 198 FEKIKAEVKDGVLYITIPKASS 219 (229)
Q Consensus 198 ~~~I~A~~~nGvL~ItlPK~~~ 219 (229)
.+..++.+.+|.|.|+|.|.+.
T Consensus 61 ~~~s~~~~~~~~l~i~L~K~~~ 82 (92)
T 2xcm_C 61 PDKCKYEVLSTKIEICLAKADI 82 (92)
T ss_dssp GGGCEEEECSSCEEEEEEBSSS
T ss_pred chhEEEEEECCEEEEEEEcCCC
Confidence 9999999999999999999864
No 15
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=98.25 E-value=2.7e-06 Score=77.60 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCc-
Q 027048 118 RTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI- 196 (229)
Q Consensus 118 ~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v- 196 (229)
..++.|... .|.+++.|||+++++|++.-.++.|+|++ |.|.|.|.||..+
T Consensus 297 ~~~~~i~~~--~~~~~l~lP~~~~~~~~l~~~gdeL~v~~--------------------------g~~rR~i~LP~~L~ 348 (374)
T 3igf_A 297 PKPITIDTH--NRQVRLFLPGFDKKQVKLTQYGPEVTVEA--------------------------GDQRRNIFLPPALS 348 (374)
T ss_dssp CCSEEEETT--TTEEEEECTTCCGGGCEEEEETTEEEEEE--------------------------TTEEEEEECCTTTT
T ss_pred CCCEEEEec--cEEEEEECCCCCHHHeEEEEECCeEEEEE--------------------------CCEeecccCCHHHc
Confidence 345666444 79999999999999999999999999997 7799999999887
Q ss_pred ccCceEEEEeCCEEEEEEecc
Q 027048 197 EFEKIKAEVKDGVLYITIPKA 217 (229)
Q Consensus 197 d~~~I~A~~~nGvL~ItlPK~ 217 (229)
...-..|+|+||.|+|++-..
T Consensus 349 ~~~v~~A~~~~~~L~i~~~~~ 369 (374)
T 3igf_A 349 GRPITGAKFQNNYLIISFLEH 369 (374)
T ss_dssp TCCEEEEEEETTEEEEEECCC
T ss_pred CCCccccEEECCEEEEEEehh
Confidence 566788999999999998643
No 16
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.8e-05 Score=60.54 Aligned_cols=79 Identities=15% Similarity=0.336 Sum_probs=69.2
Q ss_pred CCCCCeEEEEcCCEEEEEEecCCCc--ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECC
Q 027048 116 RGRTPWAIRETENDYKIRFDVPGMN--RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALP 193 (229)
Q Consensus 116 ~~~p~~dI~E~~~~y~i~~dLPG~~--kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP 193 (229)
...|...|.++++.++|.+.+|.+. ..++++.|+++.++...+ .|.-++.||
T Consensus 15 ~iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~--------------------------PYyLRL~lP 68 (115)
T 3eud_A 15 MITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS--------------------------PYYLRLRFP 68 (115)
T ss_dssp CBCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEET--------------------------TEEEEEECS
T ss_pred EeCCcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecC--------------------------CeEEEEecC
Confidence 3467899999999999999999876 889999999999999872 377789999
Q ss_pred CCc-ccCceEEEE--eCCEEEEEEeccCCC
Q 027048 194 DNI-EFEKIKAEV--KDGVLYITIPKASST 220 (229)
Q Consensus 194 ~~v-d~~~I~A~~--~nGvL~ItlPK~~~~ 220 (229)
..| +-+.-+|+| ++|.++|++||..+.
T Consensus 69 ~~vved~~~~A~YD~d~g~~~v~lpK~~~G 98 (115)
T 3eud_A 69 HELIDDERSTAQYDSKDECINVKVAKLNKN 98 (115)
T ss_dssp SCEECSTTCEEEEETTTTEEEEEEEESSTT
T ss_pred cceecCCCcceEEeCCCcEEEEEEcCCcCC
Confidence 998 778889999 589999999998753
No 17
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.7e-06 Score=68.18 Aligned_cols=76 Identities=16% Similarity=0.374 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCEEEEEEecCCCc--ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCC
Q 027048 118 RTPWAIRETENDYKIRFDVPGMN--RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDN 195 (229)
Q Consensus 118 ~p~~dI~E~~~~y~i~~dLPG~~--kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~ 195 (229)
.|.+.|.++++.++|.+.+|... ..++++.|++..+..... .|.-++.||..
T Consensus 3 TP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~--------------------------PYyLRL~LP~~ 56 (134)
T 2k8q_A 3 TPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS--------------------------PYYLRLRFPHE 56 (134)
T ss_dssp CSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSS--------------------------SSCEEECCSSC
T ss_pred CceEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecC--------------------------CeEEEecCCCe
Confidence 46789999999999999999999 899999999999998862 26667999999
Q ss_pred c-ccCceEEEE--eCCEEEEEEeccCC
Q 027048 196 I-EFEKIKAEV--KDGVLYITIPKASS 219 (229)
Q Consensus 196 v-d~~~I~A~~--~nGvL~ItlPK~~~ 219 (229)
| |.+..+|+| +.|.|+|+|||...
T Consensus 57 V~e~~~~kA~YD~d~~~~~VtLpK~~~ 83 (134)
T 2k8q_A 57 LIDDERSTAQYDSKDECINVKVAKLNK 83 (134)
T ss_dssp EECCSSCEEEEETTTTEEEEEEEESST
T ss_pred eecCCCcceeEeccCCEEEEEEeCCCC
Confidence 9 889999999 58999999999764
No 18
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=0.00039 Score=53.73 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCEEEEEEecCCC---cccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEE-CC
Q 027048 118 RTPWAIRETENDYKIRFDVPGM---NRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIA-LP 193 (229)
Q Consensus 118 ~p~~dI~E~~~~y~i~~dLPG~---~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~-LP 193 (229)
.+.++++++.+.+.|.+.+||+ .++++.|.+..+.|.|.+.... + ..|.-.+. |-
T Consensus 20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~------------~---------~~y~~~~~~L~ 78 (127)
T 1x5m_A 20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLN------------G---------KSYSMIVNNLL 78 (127)
T ss_dssp CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCS------------S---------SCEEEEEECBS
T ss_pred ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCC------------C---------CcEEEEhHHhc
Confidence 4578999999999999999999 8999999999999999873210 0 13666775 99
Q ss_pred CCcccCceEEEEeCCEEEEEEeccCC
Q 027048 194 DNIEFEKIKAEVKDGVLYITIPKASS 219 (229)
Q Consensus 194 ~~vd~~~I~A~~~nGvL~ItlPK~~~ 219 (229)
..|+.+.-+..+..+.+.|+|-|.+.
T Consensus 79 ~~I~~e~S~~~v~~~kVei~L~K~~~ 104 (127)
T 1x5m_A 79 KPISVEGSSKKVKTDTVLILCRKKVE 104 (127)
T ss_dssp SCCCTTTCEEEEETTEEEEEEECSSS
T ss_pred CccCcccCEEEEeCCEEEEEEEECCC
Confidence 99999999999999999999999874
No 19
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=97.67 E-value=0.00032 Score=55.11 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=70.7
Q ss_pred CCCCeEEEEc-CCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeee---EEEEEEEC
Q 027048 117 GRTPWAIRET-ENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYG---SYNTRIAL 192 (229)
Q Consensus 117 ~~p~~dI~E~-~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g---~f~r~i~L 192 (229)
..+.++++++ .+.+.|.+.++++.+++++|.+..+.|.|......... ...+ -..| .|.-.+.|
T Consensus 18 ~~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~-----------l~~~-~a~g~~~~y~~~~~L 85 (134)
T 1wh0_A 18 AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNF-----------LRLH-PGCGPHTTFRWQVKL 85 (134)
T ss_dssp SCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHH-----------HHHS-TTCCTTSCEEEEEEB
T ss_pred cCCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcc-----------cccc-cccCcceeEEEeccc
Confidence 3567999999 99999999999999999999999999999874321100 0000 0001 46667889
Q ss_pred CCCcccCceEEEEeCCEEEEEEeccCC
Q 027048 193 PDNIEFEKIKAEVKDGVLYITIPKASS 219 (229)
Q Consensus 193 P~~vd~~~I~A~~~nGvL~ItlPK~~~ 219 (229)
-..|+++.-+..+..+-+.|+|.|.+.
T Consensus 86 ~~~I~pe~S~~~v~~~kIeI~L~K~e~ 112 (134)
T 1wh0_A 86 RNLIEPEQCTFCFTASRIDICLRKRQS 112 (134)
T ss_dssp SSCEEEEEEEEEECSSEEEEEEEESSS
T ss_pred cccCCchhCEEEEeCCEEEEEEEECCC
Confidence 999999998999999999999999863
No 20
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=97.66 E-value=0.00035 Score=54.27 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCEEEEEEecC-C--CcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECC
Q 027048 117 GRTPWAIRETENDYKIRFDVP-G--MNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALP 193 (229)
Q Consensus 117 ~~p~~dI~E~~~~y~i~~dLP-G--~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP 193 (229)
..+.+.+.++.+++.|++.|| | ++++||+|.+..+.|.|.... ..+ .-...|.
T Consensus 6 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg--------------~~~----------~~~~~L~ 61 (131)
T 1wfi_A 6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKG--------------QPP----------VVDGELY 61 (131)
T ss_dssp SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETT--------------SCC----------SBCSCBS
T ss_pred CCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECC--------------ceE----------EEecccc
Confidence 467899999999999999999 6 899999999999999998621 000 1134688
Q ss_pred CCcccCceEEEEeCC-EEEEEEeccCC
Q 027048 194 DNIEFEKIKAEVKDG-VLYITIPKASS 219 (229)
Q Consensus 194 ~~vd~~~I~A~~~nG-vL~ItlPK~~~ 219 (229)
..|+.+.-+..+++| .|.|+|-|...
T Consensus 62 ~~I~~e~s~w~i~~~k~v~i~L~K~~~ 88 (131)
T 1wfi_A 62 NEVKVEESSWLIEDGKVVTVHLEKINK 88 (131)
T ss_dssp SCBCSTTCEEEEETTTEEEEEEEBSSS
T ss_pred cccccccCEEEEcCCCEEEEEEEECCC
Confidence 999999999999998 89999999864
No 21
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=97.66 E-value=0.00087 Score=51.55 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCCCeEEEEcCCEEEEEEecC-CC-cccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECC
Q 027048 116 RGRTPWAIRETENDYKIRFDVP-GM-NRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALP 193 (229)
Q Consensus 116 ~~~p~~dI~E~~~~y~i~~dLP-G~-~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP 193 (229)
...+.+.+.++.+++.|++.|| |+ +++||+|.+..+.|.|.+.... + ..+.-...|.
T Consensus 17 ~~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~------------~---------~~~~~~~~L~ 75 (124)
T 1wgv_A 17 AVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEEN------------G---------ERVLMEGKLT 75 (124)
T ss_dssp BCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSS------------S---------EEEEEEEEBS
T ss_pred CcCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccC------------C---------CceEEccccc
Confidence 4467899999999999999999 88 9999999999999999874310 0 1123457899
Q ss_pred CCcccCceEEEEeCCE-EEEEEeccCC
Q 027048 194 DNIEFEKIKAEVKDGV-LYITIPKASS 219 (229)
Q Consensus 194 ~~vd~~~I~A~~~nGv-L~ItlPK~~~ 219 (229)
..|+.+.-+..+++|- |.|+|-|.+.
T Consensus 76 ~~I~~e~S~w~i~~~k~v~i~L~K~~~ 102 (124)
T 1wgv_A 76 HKINTESSLWSLEPGKCVLVNLSKVGE 102 (124)
T ss_dssp SCBCTTTCEEEECTTSEEEEEECBSSS
T ss_pred CcCCCcCCEEEEeCCCEEEEEEEECCC
Confidence 9999999999998885 9999999763
No 22
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=97.58 E-value=0.00056 Score=52.55 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCCEEEEEEecC-C--CcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEEC
Q 027048 116 RGRTPWAIRETENDYKIRFDVP-G--MNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIAL 192 (229)
Q Consensus 116 ~~~p~~dI~E~~~~y~i~~dLP-G--~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~L 192 (229)
...+.+.+.++.+++.|++.|| | ++.+||+|.+..+.|.|.... .. +.-...|
T Consensus 14 ~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg--------------~~----------~~~~g~L 69 (121)
T 3qor_A 14 ADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKG--------------QP----------AIIDGEL 69 (121)
T ss_dssp CBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETT--------------SC----------CSEEEEB
T ss_pred CcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcC--------------cc----------eEEeccc
Confidence 4567899999999999999999 4 799999999999999987521 00 1124579
Q ss_pred CCCcccCceEEEEeCC-EEEEEEeccCC
Q 027048 193 PDNIEFEKIKAEVKDG-VLYITIPKASS 219 (229)
Q Consensus 193 P~~vd~~~I~A~~~nG-vL~ItlPK~~~ 219 (229)
...|+.+.-...+++| .|.|+|-|...
T Consensus 70 ~~~I~~deS~w~i~~~~~i~i~L~K~~~ 97 (121)
T 3qor_A 70 YNEVKVEESSWLIADGAVVTVHLEKINK 97 (121)
T ss_dssp SSCBCGGGCEEEEETTTEEEEEEEBSSS
T ss_pred cccccccccEEEEcCCCEEEEEEEECCC
Confidence 9999999999999998 99999999854
No 23
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=97.52 E-value=0.0007 Score=52.19 Aligned_cols=78 Identities=21% Similarity=0.140 Sum_probs=66.3
Q ss_pred CeEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccC
Q 027048 120 PWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFE 199 (229)
Q Consensus 120 ~~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~ 199 (229)
.++++++.+.+.|++.+|+. ++++|.++.+.|.+++.... ++ ..|.-.+.|-..|+++
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~-----------~~---------~~y~~~l~L~~~I~~e 62 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGS-----------DN---------FKHLNEIDLFHCIDPN 62 (125)
T ss_dssp CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETT-----------TT---------EEEEEEEEBSSCEEEE
T ss_pred ceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCC-----------CC---------ceEEEEEEccceeccc
Confidence 69999999999999999995 79999999999999985411 00 2367788999999999
Q ss_pred ceEEEEeCCEEEEEEeccCC
Q 027048 200 KIKAEVKDGVLYITIPKASS 219 (229)
Q Consensus 200 ~I~A~~~nGvL~ItlPK~~~ 219 (229)
..+..+.++-+.|+|.|.+.
T Consensus 63 ~S~~~v~~~kiei~L~K~~~ 82 (125)
T 1ejf_A 63 DSKHKRTDRSILCCLRKGES 82 (125)
T ss_dssp EEEEEECSSCEEEEEEESST
T ss_pred cCEEEECCCEEEEEEEECCC
Confidence 99999988999999999863
No 24
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=97.43 E-value=0.001 Score=51.65 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCEEEEEEecC-CCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCc
Q 027048 118 RTPWAIRETENDYKIRFDVP-GMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI 196 (229)
Q Consensus 118 ~p~~dI~E~~~~y~i~~dLP-G~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v 196 (229)
.+.+.+.++.+++.|++.|| |+++++|+|.+..+.|.|.+. +. . .-...|...|
T Consensus 4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~---------------g~---------~-~~~~~L~~~I 58 (131)
T 2o30_A 4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ---------------GE---------I-VIDGELLHEV 58 (131)
T ss_dssp -CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEET---------------TE---------E-EEEEEBSSCE
T ss_pred CCcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEEC---------------CE---------e-eEcccccccc
Confidence 36789999999999999996 899999999999999999862 11 1 1246799999
Q ss_pred ccCceEEEEeCCEEEEEEeccC
Q 027048 197 EFEKIKAEVKDGVLYITIPKAS 218 (229)
Q Consensus 197 d~~~I~A~~~nGvL~ItlPK~~ 218 (229)
+.+.-+..+.+|-|.|+|-|..
T Consensus 59 ~~e~S~w~i~~~kv~i~L~K~~ 80 (131)
T 2o30_A 59 DVSSLWWVINGDVVDVNVTKKR 80 (131)
T ss_dssp EEEEEEEEEETTEEEEEEEESS
T ss_pred ccccCEEEEeCCEEEEEEEECC
Confidence 9999999999999999999974
No 25
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=97.30 E-value=0.003 Score=50.65 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCEEEEEEecC-CCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCC
Q 027048 117 GRTPWAIRETENDYKIRFDVP-GMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDN 195 (229)
Q Consensus 117 ~~p~~dI~E~~~~y~i~~dLP-G~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~ 195 (229)
..+.+.+.++.+++.|++.|| |++.+||+|.+..+.|.|.++ +. .+ -...|...
T Consensus 12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~k---------------g~---------~~-l~g~L~~~ 66 (157)
T 2rh0_A 12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVG---------------GR---------EI-LKGKLFDS 66 (157)
T ss_dssp ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEET---------------TE---------EE-EEEEBSSC
T ss_pred CCCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEEC---------------CE---------EE-Eeeccccc
Confidence 357799999999999999998 899999999999999999862 11 11 24679999
Q ss_pred cccCceEEEEeCCE-EEEEEeccCC
Q 027048 196 IEFEKIKAEVKDGV-LYITIPKASS 219 (229)
Q Consensus 196 vd~~~I~A~~~nGv-L~ItlPK~~~ 219 (229)
|+.+.-+..+.+|- |.|+|-|...
T Consensus 67 I~~eeS~w~i~~~k~v~I~L~K~~~ 91 (157)
T 2rh0_A 67 TIADEGTWTLEDRKMVRIVLTKTKR 91 (157)
T ss_dssp BCGGGCEEEEECCCEEEEEEEBSSC
T ss_pred cCccccEEEEcCCcEEEEEEEEcCC
Confidence 99999999999884 9999999874
No 26
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.04 E-value=0.0025 Score=50.78 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCEEEEEEecCCCcccceEEEEE-CCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCc
Q 027048 118 RTPWAIRETENDYKIRFDVPGMNRNDVKVRVE-ESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI 196 (229)
Q Consensus 118 ~p~~dI~E~~~~y~i~~dLPG~~kedV~V~v~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v 196 (229)
.|.++++++.+.+.|++.+|++ ++++|.++ .+.|.|++. .. . + ..|.-.+.|=..|
T Consensus 4 ~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~-~~--~---------~---------~~y~~~l~L~~~I 60 (150)
T 2kmw_A 4 NPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSAL-GA--Q---------G---------ERFEFSLELYGKI 60 (150)
T ss_dssp CCCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEE-TT--T---------T---------EEEEEEEEBSSCE
T ss_pred CCcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEE-cC--C---------C---------ceEEEEeEhhhcc
Confidence 4679999999999999999997 58999999 789999985 11 0 1 2477788999999
Q ss_pred ccCceEEEEeCCEEEEEEeccCC
Q 027048 197 EFEKIKAEVKDGVLYITIPKASS 219 (229)
Q Consensus 197 d~~~I~A~~~nGvL~ItlPK~~~ 219 (229)
+++ -+..+...-+.|+|.|.+.
T Consensus 61 dpe-S~~~v~~~kIei~L~K~e~ 82 (150)
T 2kmw_A 61 MTE-YRKNVGLRNIIFSIQKEER 82 (150)
T ss_dssp EEE-EEEEEESSSEEEEEEECCS
T ss_pred ccc-ceEEecCCEEEEEEEECCC
Confidence 999 8888888889999999764
No 27
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00057 Score=53.48 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCE-------EEEEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEE
Q 027048 118 RTPWAIRETEND-------YKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRI 190 (229)
Q Consensus 118 ~p~~dI~E~~~~-------y~i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i 190 (229)
.|.++++++.+. +.|++.+|++ ++++|.++.+.|.|++......... . -..|.-.+
T Consensus 6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g~~-------~--------~~~y~~~l 68 (134)
T 2cg9_X 6 NPQVAWAQRSSTTDPERNYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVGDE-------N--------VHHYQLHI 68 (134)
T ss_dssp -----CBCCCEEECCCSSEEEEECCCSSE--ESCCCCBCSSEEEECCEEC----------------------CEEBCEEE
T ss_pred CCCEEEEeCCCCcCCcCCEEEEEEEecCC--CceEEEEECCEEEEEEecccccCCc-------c--------CceEEEEE
Confidence 456778888766 9999999997 4899999999999987542100000 0 02366778
Q ss_pred ECCCCcccCceEEEEeCCE-EEEEEeccC
Q 027048 191 ALPDNIEFEKIKAEVKDGV-LYITIPKAS 218 (229)
Q Consensus 191 ~LP~~vd~~~I~A~~~nGv-L~ItlPK~~ 218 (229)
.|...|+++..+..+.++. |.|+|.|.+
T Consensus 69 ~L~~~Idpe~S~~~v~~~~~vei~L~K~~ 97 (134)
T 2cg9_X 69 DLYKEIIPEKTMHKVANGQHYFLKLYKKD 97 (134)
T ss_dssp ECSSCCCSSSEEEEECCC--CEEEEEECS
T ss_pred EChhhccccccEEEECCCEEEEEEEEECC
Confidence 9999999999999999998 999999987
No 28
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=77.31 E-value=5.3 Score=27.89 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=29.3
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 027048 184 GSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKAS 218 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlPK~~ 218 (229)
..|.-.+.|| +++.+.|+..+.+|+|+|..-+..
T Consensus 7 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 40 (85)
T 3q9p_A 7 DRWRVSLDVN-HFAPDELTVKTKDGVVEITGKHAA 40 (85)
T ss_dssp CEEEEEEECT-TTCCSEEEEEEETTEEEEEEEEC-
T ss_pred CEEEEEEECC-CCChHHEEEEEECCEEEEEEEEcc
Confidence 3577789999 899999999999999999987654
No 29
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=71.89 E-value=7.3 Score=27.66 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=28.8
Q ss_pred CEEEEEEecC-CCcccceEEEEECCEEEEEEEEe
Q 027048 128 NDYKIRFDVP-GMNRNDVKVRVEESMLVIKAEKA 160 (229)
Q Consensus 128 ~~y~i~~dLP-G~~kedV~V~v~~~~L~I~g~~~ 160 (229)
..|.-.+.|| +++.+.|+-.+++|.|+|+..+.
T Consensus 64 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~ 97 (100)
T 3gla_A 64 GSFHRRFALPDSADADGITAAGRNGVLEIRIPKR 97 (100)
T ss_dssp EEEEEEEECCTTBCTTSCEEEEETTEEEEEEEBC
T ss_pred eEEEEEEECCCCcChHHeEEEEeCCEEEEEEecC
Confidence 3677889999 58999999999999999998764
No 30
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=71.38 E-value=8.7 Score=27.57 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=28.5
Q ss_pred EEEEEEecC-CCcccceEEEEECCEEEEEEEEec
Q 027048 129 DYKIRFDVP-GMNRNDVKVRVEESMLVIKAEKAQ 161 (229)
Q Consensus 129 ~y~i~~dLP-G~~kedV~V~v~~~~L~I~g~~~~ 161 (229)
.|.-.+.|| +++.+.++-.+++|.|+|+..+..
T Consensus 62 ~f~R~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 95 (102)
T 4fei_A 62 RFVRELAFPEPVRPASGVASLAGGVLTVRFEKLR 95 (102)
T ss_dssp EEEEEEECSSCBCTTCCEEEEETTEEEEEEEBSS
T ss_pred EEEEEEECCCCcchhHcEEEEECCEEEEEEEccC
Confidence 466678999 689999999999999999997754
No 31
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=70.55 E-value=6 Score=28.94 Aligned_cols=19 Identities=11% Similarity=0.427 Sum_probs=16.3
Q ss_pred ccceEEEEECCEEEEEEEE
Q 027048 141 RNDVKVRVEESMLVIKAEK 159 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~ 159 (229)
|+.|+|+++++.++|+|.+
T Consensus 20 P~gV~V~i~~~~VtVKGPk 38 (100)
T 2cql_A 20 PENVDITLKGRTVIVKGPR 38 (100)
T ss_dssp CSSCEEEEETTEEEEEETT
T ss_pred CCCCEEEEeCCEEEEECCC
Confidence 3688999999999999944
No 32
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=69.48 E-value=6.7 Score=27.54 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=28.4
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 027048 185 SYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA 217 (229)
Q Consensus 185 ~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlPK~ 217 (229)
.|.-.+.|| +++.+.|+-.+.+|.|+|+.-+.
T Consensus 7 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 38 (90)
T 2y1y_A 7 RFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHE 38 (90)
T ss_dssp CEEEEEECT-TSCGGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCcHHHeEEEEECCEEEEEEEEe
Confidence 477789999 89999999999999999998654
No 33
>2nwt_A UPF0165 protein AF_2212; HOMO dimer protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: b.129.2.2
Probab=67.60 E-value=5.1 Score=27.60 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=18.8
Q ss_pred CceEEEEeCCEEEEEEeccCCCCCcEEeec
Q 027048 199 EKIKAEVKDGVLYITIPKASSTAKIVDINV 228 (229)
Q Consensus 199 ~~I~A~~~nGvL~ItlPK~~~~~k~i~I~I 228 (229)
..|+|.|+||||+--=|-.-++...+.|.|
T Consensus 3 k~IeAiYEnGVfkPLe~l~L~EG~kV~I~I 32 (69)
T 2nwt_A 3 KIIEAVYENGVFKPLQKVDLKEGERVKIKL 32 (69)
T ss_dssp CCEEEEEETTEEEESSCCCCCTTEEEEEEC
T ss_pred ceEEEEEECCEEeECCcCCCCCCCEEEEEE
Confidence 468999999999743333333344555544
No 34
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=67.36 E-value=9.1 Score=27.83 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=28.8
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 027048 184 GSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA 217 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlPK~ 217 (229)
..|.-.+.|| +++.+.|+..+.+|.|+|+--+.
T Consensus 12 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 44 (106)
T 3l1e_A 12 DKFVIFLDVK-HFSPEDLTVKVQEDFVEIHGKHN 44 (106)
T ss_dssp SEEEEEEECT-TSCGGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEECCEEEEEEEEc
Confidence 4577789999 89999999999999999998653
No 35
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=66.10 E-value=11 Score=29.28 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=28.5
Q ss_pred EEEEEEecC-CCcccceEEEEECCEEEEEEEEec
Q 027048 129 DYKIRFDVP-GMNRNDVKVRVEESMLVIKAEKAQ 161 (229)
Q Consensus 129 ~y~i~~dLP-G~~kedV~V~v~~~~L~I~g~~~~ 161 (229)
.|.-.+.|| +++.+.|+-.+++|+|+|+..+..
T Consensus 118 ~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lpK~~ 151 (161)
T 4eld_A 118 EIYRTIKLPATVKEENASAKFENGVLSVILPKAE 151 (161)
T ss_dssp EEEEEEECSSCBCGGGCEEEEETTEEEEEEEBCG
T ss_pred cEEEEEECCCCcccccEEEEEECCEEEEEEEcCC
Confidence 556678999 799999999999999999998754
No 36
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=65.05 E-value=8.7 Score=27.64 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=28.9
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 027048 185 SYNTRIALPDNIEFEKIKAEVKDGVLYITIPKAS 218 (229)
Q Consensus 185 ~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlPK~~ 218 (229)
.|.-.+.|| +++.+.|+-.+++|.|+|+.-+..
T Consensus 12 ~~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~ 44 (101)
T 2wj5_A 12 YFSVLLDVK-HFSPEEISVKVVGDHVEVHARHEE 44 (101)
T ss_dssp CEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECC-CCcHHHeEEEEECCEEEEEEEEec
Confidence 467789999 999999999999999999987653
No 37
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=64.76 E-value=14 Score=27.42 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=29.9
Q ss_pred eEEEEEEECCCCcccCceEEEEeC-CEEEEEEeccCC
Q 027048 184 GSYNTRIALPDNIEFEKIKAEVKD-GVLYITIPKASS 219 (229)
Q Consensus 184 g~f~r~i~LP~~vd~~~I~A~~~n-GvL~ItlPK~~~ 219 (229)
..|.-.+.|| +++.+.|+..+.+ |.|+|+.-+...
T Consensus 34 ~~~~v~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~ 69 (123)
T 3aab_A 34 GYLVVVADLA-GFNKEKIKARVSGQNELIIEAEREIT 69 (123)
T ss_dssp TEEEEEEECC-SCCGGGCEEEEETTTEEEEEEECCCC
T ss_pred CEEEEEEECC-CCCHHHEEEEEeCCCEEEEEEEEecc
Confidence 4577778999 7999999999999 999999987653
No 38
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=63.79 E-value=12 Score=30.09 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=33.6
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA 217 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlPK~ 217 (229)
|+.|+|+++++.++|+|.+ |...+.| +.. |+...+||.|.|+.+..
T Consensus 11 P~gV~V~i~~~~VtVkGpk------------------------G~L~~~~--~~~-----v~i~~~~~~l~v~~~~~ 56 (177)
T 1rl6_A 11 PAGVTVTVNGNTVTVKGPK------------------------GELTRTF--HPD-----MTITVEGNVITVTRPSD 56 (177)
T ss_dssp CTTCEEEEETTEEEEEETT------------------------EEEEEEC--CTT-----CEEEEETTEEEEECSCC
T ss_pred CCCCEEEEeCCEEEEECCC------------------------eEEEEEc--CCC-----EEEEEeCCEEEEEcCCC
Confidence 4788999999999999944 5555544 544 45567899988876644
No 39
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=62.96 E-value=15 Score=30.52 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=33.6
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA 217 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlPK~ 217 (229)
++.|+|+++++.++|+|.+ |...+.| +.. |+...+||.|.|+.+..
T Consensus 39 P~gV~V~i~~~~VtVKGPk------------------------G~L~~~~--~~~-----v~i~~e~~~i~v~~~~~ 84 (212)
T 1nkw_E 39 PSGVTVNAQDGVFKVKGPK------------------------GELTVPY--NTE-----LTVRQDGDQLLVERPSD 84 (212)
T ss_pred CCCcEEEEeCCEEEEECCC------------------------EEEEEEC--CCC-----eEEEEECCEEEEEcCCC
Confidence 4788999999999999955 5555544 544 45567899988886654
No 40
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=59.78 E-value=17 Score=28.13 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=28.2
Q ss_pred EEEEEEecC-CCcccceEEEEECCEEEEEEEEec
Q 027048 129 DYKIRFDVP-GMNRNDVKVRVEESMLVIKAEKAQ 161 (229)
Q Consensus 129 ~y~i~~dLP-G~~kedV~V~v~~~~L~I~g~~~~ 161 (229)
.|.-.+.|| +++.+.|+-.+++|.|+|+..+..
T Consensus 105 ~F~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 138 (151)
T 1gme_A 105 KFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAE 138 (151)
T ss_dssp CEEEEEECSSCCCGGGCEEEEETTEEEEEEECCC
T ss_pred EEEEEEECCCCccccceEEEEECCEEEEEEEccC
Confidence 366678899 789999999999999999997754
No 41
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=58.29 E-value=17 Score=29.42 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=33.4
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA 217 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlPK~ 217 (229)
|+.|+|+++++.++|+|.+ |...+.|. +.. ++...+||.|.|+.+..
T Consensus 9 P~gV~v~i~~~~vtVkGpk------------------------G~L~~~~~-~~~-----v~i~~~~~~i~v~~~~~ 55 (178)
T 1vq8_E 9 PEDVDAEQDHLDITVEGDN------------------------GSVTRRLW-YPD-----IDVSVDGDTVVIESDED 55 (178)
T ss_dssp CTTCEEEEETTEEEEEETT------------------------EEEEEECC-CTT-----CEEEEETTEEEEECSCC
T ss_pred CCCCEEEEeCCEEEEECCC------------------------eEEEEEEE-CCe-----EEEEEECCEEEEEcCCC
Confidence 3788999999999999944 55555442 333 45567899988876644
No 42
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.73 E-value=14 Score=29.95 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=34.1
Q ss_pred EEEecCCCcccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCEEE
Q 027048 132 IRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLY 211 (229)
Q Consensus 132 i~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGvL~ 211 (229)
-.+++| +.|+|+++++.++|+|.+ |.-.+.|.-| + ++-.++++.|.
T Consensus 9 ~~I~IP----~gV~v~i~~~~V~VkGpk------------------------G~L~~~~~~~-~-----v~i~~~~~~l~ 54 (184)
T 3j21_F 9 EEVEIP----EGVEVTVEGYKVKVKGPK------------------------GELEREFFWP-G-----IQIFTEDGNVV 54 (184)
T ss_dssp EEEECC----SSCEEEESSSEEEEECSS------------------------CEEEEECCCT-T-----CEEEEETTEEE
T ss_pred EEEeCC----CCcEEEEeCCEEEEEcCC------------------------eEEEEEecCC-c-----EEEEEeCCEEE
Confidence 345555 789999999999999954 4455444322 2 45567889888
Q ss_pred EEEe
Q 027048 212 ITIP 215 (229)
Q Consensus 212 ItlP 215 (229)
|..+
T Consensus 55 v~~~ 58 (184)
T 3j21_F 55 IYKD 58 (184)
T ss_dssp EECS
T ss_pred EEEC
Confidence 8753
No 43
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=50.20 E-value=20 Score=28.65 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=28.4
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 027048 185 SYNTRIALPDNIEFEKIKAEVKDGVLYITIPKAS 218 (229)
Q Consensus 185 ~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlPK~~ 218 (229)
.|.-.+.|| +++.+.|+.++.+|.|+|+--+.+
T Consensus 74 ~~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~ 106 (175)
T 2klr_A 74 RFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEE 106 (175)
T ss_dssp EEEEEECCS-SCCGGGEEEEEETTEEEEEEEEEE
T ss_pred eEEEEEECC-CCChHHEEEEEECCEEEEEEEEcc
Confidence 477788999 899999999999999999986643
No 44
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=48.95 E-value=30 Score=28.10 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=31.9
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEEE--eCCEEEEEEec
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEV--KDGVLYITIPK 216 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~--~nGvL~ItlPK 216 (229)
|+.|+|+++++.++|+|.+ |.-.+.|. +.. ++..+ +++.|.|..+-
T Consensus 13 P~gV~v~i~~~~V~VkGPk------------------------G~L~~~~~-~~~-----v~i~~~~~~~~l~v~~~~ 60 (190)
T 3iz5_F 13 PEGVTVQVAAKVVTVEGPR------------------------GKLTRNFK-HLN-----LDFQLLEGGRKLQVDAWF 60 (190)
T ss_dssp CTTCEEEEETTEEEEEETT------------------------EEEEEECC-CTT-----EEEEEETTTTEEEEEESC
T ss_pred CCCCEEEEeCCEEEEECCC------------------------ceEEEEcc-CCc-----EEEEEEcCCCEEEEEECC
Confidence 4789999999999999944 55554432 122 44556 78988888654
No 45
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=47.81 E-value=29 Score=27.95 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=31.7
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIP 215 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlP 215 (229)
|+.|+|+++++.++|+|.+ |.-.+. |+..| +-.++++.|.|..+
T Consensus 12 P~gV~v~i~~~~v~VkGpk------------------------G~L~~~--~~~~v-----~i~~~~~~l~v~~~ 55 (180)
T 3v2d_H 12 PKGVSVEVAPGRVKVKGPK------------------------GELEVP--VSPEM-----RVVVEEGVVRVERP 55 (180)
T ss_dssp CTTCEEEEETTEEEEECSS------------------------CEEEEE--CCTTS-----EEEEETTEEEEECS
T ss_pred CCCcEEEEeCCEEEEEeCC------------------------cEEEEE--eCCCE-----EEEEECCEEEEEEC
Confidence 5789999999999999944 444444 45444 44568998888753
No 46
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=45.27 E-value=39 Score=27.43 Aligned_cols=46 Identities=13% Similarity=0.366 Sum_probs=31.8
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEE-EeCCEEEEEEec
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAE-VKDGVLYITIPK 216 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~-~~nGvL~ItlPK 216 (229)
|+.|+|+++++.++|+|.+ |.-.+. |+. + .+.-+ .++|.|.|..+-
T Consensus 13 P~gV~v~i~~~~V~VkGPk------------------------G~L~~~--~~~-~---~v~i~~~~~~~l~v~~~~ 59 (191)
T 3u5e_H 13 PEGVTVSIKSRIVKVVGPR------------------------GTLTKN--LKH-I---DVTFTKVNNQLIKVAVHN 59 (191)
T ss_dssp CTTCEEEEETTEEEEEETT------------------------EEEEEE--CTT-T---CCEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEeCCEEEEEcCC------------------------eEEEEE--ccC-C---cEEEEEecCCeEEEEECC
Confidence 4789999999999999944 555554 442 1 23344 468999988654
No 47
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=45.14 E-value=26 Score=26.61 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.9
Q ss_pred ceEEEEeCCEEEEEEec
Q 027048 200 KIKAEVKDGVLYITIPK 216 (229)
Q Consensus 200 ~I~A~~~nGvL~ItlPK 216 (229)
.+.+++.+|||+|+++.
T Consensus 48 ~~Dve~~~gVLti~f~~ 64 (123)
T 3oeq_A 48 IPDVELSHGVMTLEIPA 64 (123)
T ss_dssp CCEEEECSSEEEEECTT
T ss_pred ceEEEccCCEEEEEECC
Confidence 37899999999999974
No 48
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=40.50 E-value=36 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=29.8
Q ss_pred CCEEEEEEecCC-CcccceEEEEECCEEEEEEEEe
Q 027048 127 ENDYKIRFDVPG-MNRNDVKVRVEESMLVIKAEKA 160 (229)
Q Consensus 127 ~~~y~i~~dLPG-~~kedV~V~v~~~~L~I~g~~~ 160 (229)
+..|.+.++|++ +++++-+..+.++.|.|.-.+.
T Consensus 53 ~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K~ 87 (114)
T 1rl1_A 53 GEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKP 87 (114)
T ss_dssp SSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECS
T ss_pred CcEEEEEeeCCCcCCccccEEEEECCEEEEEEEcC
Confidence 568999999997 7999999999999999987664
No 49
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=40.26 E-value=21 Score=26.25 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=14.8
Q ss_pred ceEEEEeCCEEEEEEec
Q 027048 200 KIKAEVKDGVLYITIPK 216 (229)
Q Consensus 200 ~I~A~~~nGvL~ItlPK 216 (229)
.+.+++.+|||+|+++.
T Consensus 29 d~D~e~~~gVLti~f~~ 45 (106)
T 1ew4_A 29 DIDCEINGGVLTITFEN 45 (106)
T ss_dssp CCEEEEETTEEEEECTT
T ss_pred CEeeeccCCEEEEEECC
Confidence 47899999999999973
No 50
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=39.98 E-value=26 Score=28.51 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=16.8
Q ss_pred ccceEEEEECCEEEEEEEE
Q 027048 141 RNDVKVRVEESMLVIKAEK 159 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~ 159 (229)
|+.|+|+++++.++|+|.+
T Consensus 13 P~gV~v~i~~~~V~VkGPk 31 (188)
T 4a17_E 13 PDKVTITAKQRVVEVKGPL 31 (188)
T ss_dssp CTTCEEEEETTEEEEEETT
T ss_pred CCCcEEEEeCCEEEEEcCC
Confidence 5889999999999999944
No 51
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=39.32 E-value=33 Score=27.91 Aligned_cols=47 Identities=9% Similarity=0.195 Sum_probs=32.9
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCE---EEEEEecc
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGV---LYITIPKA 217 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGv---L~ItlPK~ 217 (229)
|+.|+|+++++.++|+|.+ |...+. ||.. .|+...++|. |.|+.+..
T Consensus 13 P~gV~V~i~~~~VtVkGpk------------------------G~L~~~--~~~~----~v~i~~~~~~~~~i~v~~~~~ 62 (192)
T 2zkr_e 13 PENVDITLKGRTVIVKGPR------------------------GTLRRD--FNHI----NVELSLLGKKKKRLRVDKWWG 62 (192)
T ss_dssp CTTCEEEEETTEEEEEETT------------------------EEEEEE--CCSS----SCEEEEETTTTCEEEEECSCC
T ss_pred CCCCEEEEeCCEEEEECCC------------------------eEEEEE--eCCC----CEEEEEecCceeEEEEEcCCC
Confidence 5789999999999999944 455443 4431 3456678888 87776544
No 52
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=37.42 E-value=9.4 Score=32.03 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=32.2
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEE-EEeCCEEEEEEecc
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKA-EVKDGVLYITIPKA 217 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A-~~~nGvL~ItlPK~ 217 (229)
|+.|+|+++++.++|+|.+ |...+ .|+..+ +. ..+||.|.|+.+..
T Consensus 54 P~gV~V~i~~~~VtVKGPk------------------------G~L~~--~~~~~v-----~i~~~e~~~i~v~~~~~ 100 (223)
T 3bbo_I 54 PSNVTIALEGQDLKVKGPL------------------------GELAL--TYPREV-----ELTKEESGFLRVKKTVE 100 (223)
T ss_dssp STTSCEEESSSEEEECCSS------------------------CCEEE--ECCSSC-----EEEECSSSCEEEECSSC
T ss_pred CCCCEEEEeCCEEEEECCC------------------------eEEEE--EcCCCE-----EEEEecCCEEEEEcCCC
Confidence 4778899999999999954 34444 346554 33 56889888886654
No 53
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=33.73 E-value=1e+02 Score=22.82 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=29.0
Q ss_pred CceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 027048 174 EEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIP 215 (229)
Q Consensus 174 ~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlP 215 (229)
..|.|..+. ....-.|.||.+++.+.+...+...-|.|.+.
T Consensus 5 ~~y~W~Qt~-~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~ 45 (131)
T 2o30_A 5 AKYTWDQEL-NEINIQFPVTGDADSSAIKIRMVGKKICVKNQ 45 (131)
T ss_dssp CCCEEEEET-TEEEEEEECC---CCSCEEEEEETTEEEEEET
T ss_pred CcEEEEecC-CEEEEEEECCCCCCccceEEEEECCEEEEEEC
Confidence 356666543 34455789999999999999999999999873
No 54
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=29.68 E-value=1.9e+02 Score=23.92 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=42.6
Q ss_pred EEEEE---ecCCCcccceEEEEE--CCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEE
Q 027048 130 YKIRF---DVPGMNRNDVKVRVE--ESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAE 204 (229)
Q Consensus 130 y~i~~---dLPG~~kedV~V~v~--~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~ 204 (229)
|.+.+ .|||+..+==-|.+. ++.|.+..... .....-... |...+++.|...-|.+.|...
T Consensus 13 y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~-------------~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~ 78 (255)
T 3qqz_A 13 YHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKP-------------AAIVEMTTN-GDLIRTIPLDFVKDLETIEYI 78 (255)
T ss_dssp CEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEETT-------------EEEEEEETT-CCEEEEEECSSCSSEEEEEEC
T ss_pred eEEEEeceECCCcccCcceeEEeCCCCEEEEEECCC-------------CeEEEEeCC-CCEEEEEecCCCCChHHeEEe
Confidence 44444 489998753336665 57787765331 122222233 788999999877788888664
Q ss_pred EeCCEEEEE
Q 027048 205 VKDGVLYIT 213 (229)
Q Consensus 205 ~~nGvL~It 213 (229)
.+|.+.|.
T Consensus 79 -~~g~~~vs 86 (255)
T 3qqz_A 79 -GDNQFVIS 86 (255)
T ss_dssp -STTEEEEE
T ss_pred -CCCEEEEE
Confidence 66766553
No 55
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A*
Probab=28.34 E-value=1e+02 Score=26.01 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=28.6
Q ss_pred cccceEEEEECCEEEEEEEEecccccCCCCCCCCCce-EEeeeeeeEEEEEEECCCC
Q 027048 140 NRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEE-EWPTNGYGSYNTRIALPDN 195 (229)
Q Consensus 140 ~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~~~er~~g~f~r~i~LP~~ 195 (229)
.++++.| +++.|+|++.+.. .... ......||.|+-++.||..
T Consensus 31 ~~~Nv~v--~~G~L~L~~~k~t-----------sa~i~Sk~~~~yG~~Ear~Klp~g 74 (274)
T 2uwa_A 31 GPQHQRV--DQGSLTIWLDSTS-----------GSGFKSINRYRSGYFGANIKLQSG 74 (274)
T ss_dssp CGGGEEE--ETTEEEEEECSSC-----------CEEEEEEEEEEEEEEEEEEECCCS
T ss_pred CCCCEEE--ECCEEEEEEecCC-----------CCEEEECceEeeEEEEEEEEeCCC
Confidence 4566665 7888999875421 1111 1235788999999999975
No 56
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=27.54 E-value=84 Score=23.15 Aligned_cols=37 Identities=11% Similarity=0.325 Sum_probs=29.2
Q ss_pred EEEcCCEEEEEEec-CCCcccceEEEEECCEEEEEEEEe
Q 027048 123 IRETENDYKIRFDV-PGMNRNDVKVRVEESMLVIKAEKA 160 (229)
Q Consensus 123 I~E~~~~y~i~~dL-PG~~kedV~V~v~~~~L~I~g~~~ 160 (229)
+.+.++.+.|.+.+ ||.+++.| +.++++.|.|+-.-.
T Consensus 8 ~~~~~~~v~l~v~V~P~A~r~~I-~g~~~~~LkV~v~Ap 45 (108)
T 1n91_A 8 VTVNDDGLVLRLYIQPKASRDSI-VGLHGDEVKVAITAP 45 (108)
T ss_dssp EEECSSEEEEEEEEECSSSSCEE-EEECSSCEEEECCCC
T ss_pred EEECCCeEEEEEEEeeCCCccee-ecccCCEEEEEEecC
Confidence 45678889999988 99999887 457888888886543
No 57
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=27.16 E-value=22 Score=28.51 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=30.5
Q ss_pred ccceEEEEECCEEEEEEEEecccccCCCCCCCCCceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 027048 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITI 214 (229)
Q Consensus 141 kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGvL~Itl 214 (229)
|+.|+|+++++.++|+|.+ |...+. |+.. ++-.++++.|.|..
T Consensus 11 P~gV~v~i~~~~V~VkGpk------------------------G~L~~~--~~~~-----v~i~~~~~~l~v~~ 53 (176)
T 3r8s_G 11 PAGVDVKINGQVITIKGKN------------------------GELTRT--LNDA-----VEVKHADNTLTFGP 53 (176)
T ss_dssp CTTCCCEESSSEEECCBTT------------------------BCCEEE--CCSS-----CEEEEETTEEEEEC
T ss_pred CCCcEEEEeCCEEEEEcCC------------------------EEEEEE--CCCC-----EEEEEeCCEEEEEE
Confidence 4788999999999999844 333333 4544 44567889988873
No 58
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius}
Probab=26.09 E-value=1e+02 Score=26.82 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=30.9
Q ss_pred cccceEEEEECCEEEEEEEEeccccc-CCCCCCCCCceEE-------e--eeeeeEEEEEEECCCC
Q 027048 140 NRNDVKVRVEESMLVIKAEKAQRNEA-STDGSTVGEEEEW-------P--TNGYGSYNTRIALPDN 195 (229)
Q Consensus 140 ~kedV~V~v~~~~L~I~g~~~~~~~~-~~~~~~~~~~~~~-------~--er~~g~f~r~i~LP~~ 195 (229)
+++.+.| +++.|+|++.+...... .+ .....+.. . ...||.|+-++.||..
T Consensus 85 ~~~Nv~v--~dG~L~I~a~~~~~~~~~~G---~~~~~ytsasg~i~Sk~~~~~yG~~E~r~Klp~~ 145 (324)
T 4awd_A 85 KAENVSV--KKGCLRIINTVLSPTEGLDG---KPGDKYRLAGGAVASVKNQAHYGYYETRMKASLT 145 (324)
T ss_dssp CGGGEEE--ETTEEEEECEEEEEEECGGG---CBSSSEEEEECEEEESCCCBCSEEEEEEEECCSS
T ss_pred cchhEEE--ECCEEEEEEEeCCCCcccCC---cccccEEEEEEEEEECCccccCcEEEEEEECCCC
Confidence 5666555 59999999987642110 00 00012221 1 3678999999999975
No 59
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=25.71 E-value=1.6e+02 Score=21.42 Aligned_cols=40 Identities=8% Similarity=0.353 Sum_probs=32.0
Q ss_pred ceEEeeeeeeEEEEEEECCCCc-ccCceEEEEeCCEEEEEEe
Q 027048 175 EEEWPTNGYGSYNTRIALPDNI-EFEKIKAEVKDGVLYITIP 215 (229)
Q Consensus 175 ~~~~~er~~g~f~r~i~LP~~v-d~~~I~A~~~nGvL~ItlP 215 (229)
.|.|..+. ..-.-.|.||.++ +.+.+...++..-|.|.+.
T Consensus 21 ~y~W~Qt~-~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~ 61 (124)
T 1wgv_A 21 NYTWSQDY-TDLEVRVPVPKHVVKGKQVSVALSSSSIRVAML 61 (124)
T ss_dssp SCEEEEET-TEEEEEEECCTTCCSGGGEEEEECSSEEEEEEE
T ss_pred cEEEEEcc-cEEEEEEEcCCCCCchhheEEEEEcCEEEEEEE
Confidence 57776554 3455579999998 9999999999999999883
No 60
>3jx8_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.16A {Parabacteroides distasonis atcc 8503}
Probab=25.66 E-value=70 Score=26.29 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=28.5
Q ss_pred eEEEEcCCEEEEEEecCCCcccceEEEEECCEEEEEEEE
Q 027048 121 WAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEK 159 (229)
Q Consensus 121 ~dI~E~~~~y~i~~dLPG~~kedV~V~v~~~~L~I~g~~ 159 (229)
+.+...++++.|+++-+.--.+.|++.+++++|.|+-+.
T Consensus 34 V~l~qgd~~~~V~i~~~~nl~~~i~~~v~~g~L~I~~~~ 72 (250)
T 3jx8_A 34 FEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKS 72 (250)
T ss_dssp EEEEECSSCCEEEEEEEGGGGGGEEEEEETTEEEEEECB
T ss_pred EEEEECCCCceEEEEECccccceEEEEEECCEEEEEEcC
Confidence 455555456666676665556899999999999998754
No 61
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=24.75 E-value=1.7e+02 Score=22.50 Aligned_cols=41 Identities=7% Similarity=0.169 Sum_probs=32.5
Q ss_pred CceEEeeeeeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 027048 174 EEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIP 215 (229)
Q Consensus 174 ~~~~~~er~~g~f~r~i~LP~~vd~~~I~A~~~nGvL~ItlP 215 (229)
..|.|..+. ....-.|.||.++..+.+...++..-|.|.+.
T Consensus 14 ~~y~W~Qt~-~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~k 54 (157)
T 2rh0_A 14 PWGQWYQTL-EEVFIEVQVPPGTRAQDIQCGLQSRHVALAVG 54 (157)
T ss_dssp SSEEEEECS-SEEEEEEECCTTCCGGGEEEEECSSEEEEEET
T ss_pred CcEEEEecC-CEEEEEEECCCCCcccceEEEEecCEEEEEEC
Confidence 467776554 34555799999999999999999999999873
No 62
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=23.73 E-value=48 Score=18.26 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHh
Q 027048 80 RTVQQMMETMERIM 93 (229)
Q Consensus 80 r~m~~m~~~mdrlf 93 (229)
|++++|-++++..|
T Consensus 13 ReLRRMSDEF~~sf 26 (27)
T 2bzw_B 13 RELRRMSDEFEGSF 26 (27)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHhHHHHhhc
Confidence 67777777776655
No 63
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=22.39 E-value=43 Score=22.91 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.6
Q ss_pred CcccceEEEEECCEEEEEEEEe
Q 027048 139 MNRNDVKVRVEESMLVIKAEKA 160 (229)
Q Consensus 139 ~~kedV~V~v~~~~L~I~g~~~ 160 (229)
|+.+.|.+...-+.|.|+|+.=
T Consensus 18 Fd~e~i~L~T~~G~L~IkG~~L 39 (71)
T 2ks0_A 18 FDPKEILLETIQGVLSIKGEKL 39 (71)
T ss_dssp ECSSEEEEEETTEEEEEEEECC
T ss_pred ECCCEEEEEeCceEEEEEcCCc
Confidence 5788899999999999999753
No 64
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=21.53 E-value=72 Score=23.91 Aligned_cols=26 Identities=0% Similarity=0.073 Sum_probs=23.0
Q ss_pred cCCCcccceEEEEECCEEEEEEEEec
Q 027048 136 VPGMNRNDVKVRVEESMLVIKAEKAQ 161 (229)
Q Consensus 136 LPG~~kedV~V~v~~~~L~I~g~~~~ 161 (229)
-|.+++-.|.|.++++.++++|+...
T Consensus 2 ~~~~~p~~i~V~v~~G~VTLsG~Vp~ 27 (132)
T 2kgs_A 2 ASALSLSLLSISRSGNTVTLIGDFPD 27 (132)
T ss_dssp CCCCCEEEEEEEECSSEEEEEEEESC
T ss_pred CCcccceeEEEEEECCEEEEEEECCC
Confidence 47788889999999999999999864
No 65
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=21.37 E-value=56 Score=24.84 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.8
Q ss_pred CceEEEEeCCEEEEEEe
Q 027048 199 EKIKAEVKDGVLYITIP 215 (229)
Q Consensus 199 ~~I~A~~~nGvL~ItlP 215 (229)
..+.+++.+|||+|+++
T Consensus 40 ~d~D~e~~~gVLti~f~ 56 (129)
T 3t3l_A 40 EDYDVSFGSGVLTVKLG 56 (129)
T ss_dssp TTCEEEEETTEEEEECC
T ss_pred cceeeecCCCEEEEEEc
Confidence 45789999999999996
No 66
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=20.47 E-value=2.5e+02 Score=20.35 Aligned_cols=42 Identities=7% Similarity=0.187 Sum_probs=33.3
Q ss_pred CceEEeeeeeeEEEEEEECCCC--cccCceEEEEeCCEEEEEEec
Q 027048 174 EEEEWPTNGYGSYNTRIALPDN--IEFEKIKAEVKDGVLYITIPK 216 (229)
Q Consensus 174 ~~~~~~er~~g~f~r~i~LP~~--vd~~~I~A~~~nGvL~ItlPK 216 (229)
..|.|.... ....-.|.||.+ +..+.+...+...-|.|.+.-
T Consensus 17 ~~y~W~Qt~-~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg 60 (121)
T 3qor_A 17 PNYRWTQTL-SELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKG 60 (121)
T ss_dssp SSCEEEECS-SEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETT
T ss_pred CCEEEEEcc-ceEEEEEECCCCCcccccceEEEEEcCEEEEEEcC
Confidence 457777544 456667999998 899999999999999998863
Done!