RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027048
(229 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 93.0 bits (232), Expect = 8e-25
Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
+ ET++ Y + D+PG + D+KV VE+ +L I E+ + E EEE +
Sbjct: 2 VYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEE---------EEENYLRRE 52
Query: 183 --YGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPK 216
YGS++ LP++++ +KIKA +++GVL IT+PK
Sbjct: 53 RSYGSFSRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 85.0 bits (211), Expect = 2e-21
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
I+E ++ + ++ DVPG ++KV+VE++ +++K + + E
Sbjct: 2 IKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGL--------RSERS 53
Query: 183 YGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASS---TAKIVDIN 227
Y S++ + LP+N + +K+KA +KDGVL +T+PK + + I
Sbjct: 54 YRSFSRKFVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRRIQIQ 101
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 86.3 bits (214), Expect = 2e-21
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 84 QMMETMERIMEDPFAYGVTWP--SQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNR 141
+ M + + G P I ET+++Y+I ++PG+++
Sbjct: 4 EAMRNRFDFFPLLRDSPGFDRLFREFGNLPESRPTGTPPVDIEETDDEYRITAELPGVDK 63
Query: 142 NDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKI 201
D+++ VE + L I+ E+ + E +G E YG + LP+ ++ E I
Sbjct: 64 EDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERA------YGEFERTFRLPEKVDPEVI 117
Query: 202 KAEVKDGVLYITIPKASSTA---KIVDIN 227
KA+ K+G+L +T+PKA K ++I
Sbjct: 118 KAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 83.8 bits (208), Expect = 3e-21
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 14/94 (14%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
+T+++ + D+PG+ + D+KV VE+++L I ++ EEEE
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKR--------------EEEEERERS 46
Query: 183 YGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPK 216
YG + LP++++ EK KA +++GVL IT+PK
Sbjct: 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 70.8 bits (174), Expect = 3e-16
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 124 RETENDYKIRFDVPGMNRNDVKVRVEES-MLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
+ET + + DVPG+ + DVKV VE+ +L I E+ + E D E
Sbjct: 5 KETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVER------S 58
Query: 183 YGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPK 216
G + R LP+N + +++KA +++GVL +T+PK
Sbjct: 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 67.9 bits (167), Expect = 5e-15
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
I+ET+++Y + D+PG + D+K+ ++ L I A++ + + E +
Sbjct: 5 IKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERY---- 60
Query: 183 YGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPK 216
YGS++ LP N++ E+IKA+ ++GVL IT+PK
Sbjct: 61 YGSFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 43.7 bits (104), Expect = 3e-06
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
+ + + +++ DV G ++KV+V ++ LV++ + +R + + V E
Sbjct: 2 VNDDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERED---EHGYVSRE------- 51
Query: 183 YGSYNTRIALPDNIEFEKIKAE-VKDGVLYITIPK 216
+ R LP+ ++ + + + DGVL I PK
Sbjct: 52 ---FTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 40.6 bits (96), Expect = 4e-05
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
+ EN+Y+I V G + +D+++ VE + L + +KA EE E+ G
Sbjct: 6 EKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEEN---------EEREYLHRG 56
Query: 183 --YGSYNTRIALPDNIEFEKIKAEVKDGVLYITI 214
++ L D+++ + AE+++G+L I +
Sbjct: 57 IAKRAFERSFNLADHVKVK--GAELENGLLTIDL 88
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include
p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1.
Both are co-chaperones for the heat shock protein (Hsp)
90. p23 binds Hsp90 and participates in the folding of
a number of Hsp90 clients, including the progesterone
receptor. p23 also has a passive chaperoning activity
and in addition may participate in prostaglandin
synthesis. Both p23 and Sba1p can regulate telomerase
activity. This group includes domains similar to the
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1). Sgt1 interacts with multiple
protein complexes and has the features of a
co-chaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 32.3 bits (74), Expect = 0.040
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 23/97 (23%)
Query: 121 WAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPT 180
W +T ++ I + + + DVKV L + + E
Sbjct: 1 WY--QTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKE---------------- 42
Query: 181 NGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA 217
Y L I+ E+ K V+D + IT+ K
Sbjct: 43 -----YLLEGELFGPIDPEESKWTVEDRKIEITLKKK 74
>gnl|CDD|220926 pfam10988, DUF2807, Protein of unknown function (DUF2807). This
bacterial family of proteins shows structural similarity
to other pectin lyase families. Although structures from
this family align with acetyl-transferases, there is no
conservation of catalytic residues found. It is likely
that the function is one of cell-adhesion. In PDB:3jx8,
it is interesting to note that the sequence of contains
several well defined sequence repeats, centred around
GSG motifs defining the tight beta turn between the two
sheets of the super-helix; there are 8 such repeats in
the C-terminal half of the protein, which could be
grouped into 4 repeats of two. It seems likely that this
family belongs to the superfamily of trimeric
autotransporter adhesins (TAAs), which are important
virulence factors in Gram-negative pathogens. In the
case of Parabacteroides distasonis, which is a cmoponent
of the normal distal human gut microbiota, TAA-like
complexes probably modulate adherence to the host
(information derived from TOPSAN).
Length = 181
Score = 32.5 bits (75), Expect = 0.094
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 193 PDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINV 228
+N+ +KI+ EVK G L I + K K + + V
Sbjct: 28 DENL-LDKIETEVKGGTLKIRLKKGIRNGKNIKVTV 62
>gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 30.5 bits (69), Expect = 0.80
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 25/149 (16%)
Query: 46 SLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPA--ARTVQQMMETMERIMEDPFAYGVTW 103
S+DH+ R+ + S A PV+ + DS + + ++RIM + G+
Sbjct: 429 SIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWN--YVGI-- 484
Query: 104 PSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESM-------LVIK 156
VRS R + E E +++ G V + E LV+
Sbjct: 485 ------VRSTERLETAERKLEELEAEWEAILFRHGWKPTMVGLEACEMRNLFCVAKLVVS 538
Query: 157 AEKAQRNEA-----STDGSTVGEEEEWPT 180
+ R E+ +TD + E E PT
Sbjct: 539 S-ALARKESRGLHYTTDYPELVESERKPT 566
>gnl|CDD|226775 COG4325, COG4325, Predicted membrane protein [Function unknown].
Length = 464
Score = 30.2 bits (68), Expect = 0.88
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 69 SPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRR 116
SP + D + A + V + +++ PS R+G R
Sbjct: 324 SPAVNDPYTAIQCVHHLSAVFSVLVQRAE------PSPYRADRAGELR 365
>gnl|CDD|151704 pfam11263, Attachment_P66, Borrelia burgdorferi attachment protein
P66. P66 is an outer membrane protein in Borrelia
burgdorferi, the agent of Lyme disease. P66 has a role
in the attachment of Borrelia burgdorferi to human
cell-surface receptors.
Length = 233
Score = 29.4 bits (66), Expect = 1.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 173 GEEEEWPTNGYGSYNTRI 190
GE+E W G SY+TRI
Sbjct: 55 GEKESWAIKGSDSYSTRI 72
>gnl|CDD|109884 pfam00846, Hanta_nucleocap, Hantavirus nucleocapsid protein.
Length = 428
Score = 29.1 bits (65), Expect = 2.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 188 TRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDI 226
TRI D+ FE + K LY+++P A ST K +I
Sbjct: 155 TRIRFKDDSSFEDVNGIRKPKHLYVSLPTAQSTMKAEEI 193
>gnl|CDD|222062 pfam13349, DUF4097, Domain of unknown function (DUF4097).
Length = 166
Score = 28.1 bits (63), Expect = 2.7
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 18/89 (20%)
Query: 140 NRNDVKVRVEESMLVIKAEKAQRNEASTDGS---TVGEEEEWPTNGYGSYN------TRI 190
+ + +KV + L +K G+ T E++ G+ N I
Sbjct: 74 DDSKIKVTYKGKKLKVK---------VNGGTLTITQKEKKNIFFGGFNFNNSGDKSKITI 124
Query: 191 ALPDNIEFEKIKAEVKDGVLYITIPKASS 219
+P + +K + G + I+ A
Sbjct: 125 YVPKKYKLNTLKIKTSSGDIDISDLTAKD 153
>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have
gamma-glutamyl hydrolase activity; that is they catalyze
the cleavage of the gamma-glutamyl bond in
poly-gamma-glutamyl substrates. They are structurally
related to pfam00117, but contain extensions in four
loops and at the C terminus.
Length = 219
Score = 27.6 bits (62), Expect = 4.8
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 79 ARTVQQMMETMERIMEDPFAYGVTW 103
A +E +E F GV W
Sbjct: 192 ATAPDGTIEAIESPNAPYFVLGVQW 216
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaA-crystallin
(HspB4, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 does not belong to this group. Mutations
inHspB4 have been associated with Autosomal Dominant
Congenital Cataract (ADCC). The chaperone-like functions
of HspB4 are considered important for maintaining lens
transparency and preventing cataract.
Length = 86
Score = 26.5 bits (58), Expect = 4.9
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
+R + + I DV + D+ V+V + + I + ++R + +G
Sbjct: 5 VRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQD---------------DHG 49
Query: 183 YGS--YNTRIALPDNIEFEKIKAEVK-DGVLYITIPK 216
Y S ++ R LP N++ I + DG+L + PK
Sbjct: 50 YISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK 86
>gnl|CDD|233455 TIGR01537, portal_HK97, phage portal protein, HK97 family. This
model represents one of several distantly related
families of phage portal protein. This protein forms a
hole, or portal, that enables DNA passage during
packaging and ejection. It also forms the junction
between the phage head (capsid) and the tail proteins.
It functions as a dodecamer of a single polypeptide of
average mol. wt. of 40-90 KDa [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 341
Score = 27.3 bits (61), Expect = 6.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 129 DYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEA 165
Y I+FDV + R D K R E I++ NE
Sbjct: 294 GYYIKFDVTSILRYDSKERAEAYDKGIQSGFLTINEV 330
>gnl|CDD|226649 COG4186, COG4186, Predicted phosphoesterase or phosphohydrolase
[General function prediction only].
Length = 186
Score = 27.2 bits (60), Expect = 6.3
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 66 PVSSPGIWDSFPAARTVQQMMETMERIM--EDPFAYGVTWPSQQERVRSGYRRGRTPWAI 123
P+ +DS A Q++ E + P R Y R R P I
Sbjct: 88 PMYRHAYFDSVQA---FQRIEWDGEDVYLSHYPRP---GQDHPGMESRFDYLRLRVPLLI 141
Query: 124 R-----ETENDYKIRFDVPGMNRNDVK-VRVEESMLVIKAEKAQR 162
+ + DV G+ +K V +E +I K+++
Sbjct: 142 HGHLHSQFPKPGPGQIDV-GVEAWGLKPVSLELIQKLIWESKSEK 185
>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated.
Length = 459
Score = 27.4 bits (62), Expect = 6.3
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 2 ASYLGICTPCASERITGFPSYRSPPLLRN-----RDFCG 35
A GI P S ++ + SYR+ L N RD+ G
Sbjct: 400 AVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFG 438
>gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional.
Length = 782
Score = 27.7 bits (61), Expect = 6.5
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 35 GRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIW-DSFPAARTVQQMMETM 89
G + A+NR ++ + ++ S + + SSP W AR Q+ E +
Sbjct: 135 GGVSVSANNRPTVSEGRTPPVSPSLSLQATSSPSSPADWAKKLTDARLRQEAGEEL 190
>gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.
Length = 323
Score = 27.1 bits (60), Expect = 8.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 139 MNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTV----GEEEEWPTNGYGSY 186
MN ND + E M VI ++ A+ EA+ S + E+E YG Y
Sbjct: 151 MNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRY 202
>gnl|CDD|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1151
Score = 27.2 bits (61), Expect = 9.2
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 31 RDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETME 90
DFC R+ N+ +++ L ++ G +DS R+ Q++ E
Sbjct: 854 VDFCERVDTSQINKRAVESLIKA-----------------GAFDSLGVYRS--QLLAVYE 894
Query: 91 RIMED 95
+I++
Sbjct: 895 KILDS 899
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 25.6 bits (56), Expect = 9.5
Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
IR+T + +K+ DV ++ V+ ++ ++ I + EE+ +G
Sbjct: 5 IRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGK---------------HEEKQDEHG 49
Query: 183 YGS--YNTRIALPDNIEFEKIKAEVK-DGVLYITIP 215
+ S + + LP ++ + + + DG+L + P
Sbjct: 50 FVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAP 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.388
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,611,694
Number of extensions: 1067159
Number of successful extensions: 964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 29
Length of query: 229
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 135
Effective length of database: 6,768,326
Effective search space: 913724010
Effective search space used: 913724010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)