RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027048
(229 letters)
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 101 bits (253), Expect = 2e-27
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 17/164 (10%)
Query: 73 WDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWA---------I 123
D F ++M + + I
Sbjct: 4 RDPF--DSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISI 61
Query: 124 RETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGY 183
E + K+ +PG+N+ D+ + L I+A+++ ++ E E
Sbjct: 62 IEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE-----E 116
Query: 184 GSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA-SSTAKIVDI 226
I LP ++ E A+ ++GVL + +PKA SS K ++I
Sbjct: 117 EEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 160
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 100 bits (251), Expect = 5e-27
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 89 MERIMEDPF-AYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVR 147
+ DPF + P+ +ET + + D+PG+ + +VKV
Sbjct: 13 FADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVE 72
Query: 148 VEE-SMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVK 206
VE+ ++LV+ E+ + E D E G + R L ++ + E++KA ++
Sbjct: 73 VEDGNVLVVSGERTKEKEDKNDKWHRVE------RSSGKFVRRFRLLEDAKVEEVKAGLE 126
Query: 207 DGVLYITIPK---ASSTAKIVDIN 227
+GVL +T+PK K + I+
Sbjct: 127 NGVLTVTVPKAEVKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 96.8 bits (242), Expect = 2e-26
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
I+E N + + D+PG++ + ++V++++ +L I+ E+ + T+ + E
Sbjct: 9 IKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIE------RR 62
Query: 183 YGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA 217
YGS++ R ALPD+ + + I A ++GVL I IPK
Sbjct: 63 YGSFHRRFALPDSADADGITAAGRNGVLEIRIPKR 97
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 90.8 bits (226), Expect = 1e-23
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 86 METMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVK 145
M + + ++ +E R Y P + E + D+ G N+ +K
Sbjct: 1 MYYLGKELQKRS---------EELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIK 51
Query: 146 VRVEE-SMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFE-KIKA 203
RV + L+I+AE+ E + G + I LP N+ + +I
Sbjct: 52 ARVSGQNELIIEAER----EITEPGVKYLTQR------PKYVRKVIRLPYNVAKDAEISG 101
Query: 204 EVKDGVLYITIPKASSTAKIVD 225
+ ++GVL I IP A ++ +
Sbjct: 102 KYENGVLTIRIPIAGTSVFKFE 123
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 73.8 bits (181), Expect = 1e-16
Identities = 23/181 (12%), Positives = 61/181 (33%), Gaps = 37/181 (20%)
Query: 66 PVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVT---WPSQQERVRSGYRRGRTPWA 122
+ P I F + R+ + F + + Y R +
Sbjct: 4 AIHHPWIRRPFFP-------FHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLR 56
Query: 123 -----------IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGST 171
+R ++ + + DV + ++KV+V ++ + + +R + +
Sbjct: 57 APSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQD---EHGF 113
Query: 172 VGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEV-KDGVLYITIPK--ASSTAKIVDINV 228
+ ++ + +P +++ I + + DGVL + P+ S + + I
Sbjct: 114 I----------SREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITR 163
Query: 229 Q 229
+
Sbjct: 164 E 164
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 66.7 bits (163), Expect = 9e-15
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
+ + + DV + ++ V+V + + A E +
Sbjct: 6 VPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARH-------------EERPDEHGFI 52
Query: 183 YGSYNTRIALPDNIEFEKIKAEV-KDGVLYITIPKASSTAKI 223
++ R LP ++ + + + +GVL I AS+ A +
Sbjct: 53 AREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASL 94
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 65.7 bits (160), Expect = 2e-14
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 123 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG 182
+R + + I DV + D+ V+V+E + I + E ++
Sbjct: 7 VRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKH-------------NERQDDHGYI 53
Query: 183 YGSYNTRIALPDNIEFEKIKAEV-KDGVLYITIPK 216
++ R LP N++ + + DG+L + PK
Sbjct: 54 SREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPK 88
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 65.1 bits (159), Expect = 3e-14
Identities = 11/93 (11%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 125 ETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYG 184
T + +++ DV +++ V+ ++ ++ I + A ++
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHA-------------ARQDEHGYISR 50
Query: 185 SYNTRIALPDNIEFEKIKAEV-KDGVLYITIPK 216
+ + LP ++ ++ + + +G L + P
Sbjct: 51 CFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 63.2 bits (154), Expect = 2e-13
Identities = 13/93 (13%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 125 ETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYG 184
++ + + DV + ++KV+V ++ + + E ++
Sbjct: 3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKH-------------EERQDEHGFISR 49
Query: 185 SYNTRIALPDNIEFEKIKAEV-KDGVLYITIPK 216
++ + +P +++ I + + DGVL + P+
Sbjct: 50 EFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR 82
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 61.8 bits (149), Expect = 1e-11
Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 25/146 (17%)
Query: 73 WDSFPAARTVQQMMETMERIMEDPF--AYGVTWPSQQERVRSGYRRGRTPWAIRETENDY 130
+ + + +M+ M I F T P + + ++ Y G+ + +
Sbjct: 63 FTAMD--NAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGK------DGRLHF 114
Query: 131 KIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRI 190
K+ F+V ++ ++ +++ LV++A+K+ D + I
Sbjct: 115 KVYFNVKNFKAEEITIKADKNKLVVRAQKSVACG---DAAMSES-----------VGRSI 160
Query: 191 ALPDNIEFEKIKAEV-KDGVLYITIP 215
LP +++ I+A + D VL I P
Sbjct: 161 PLPPSVDRNHIQATITTDDVLVIEAP 186
Score = 57.1 bits (137), Expect = 6e-10
Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 13/138 (9%)
Query: 82 VQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDV---PG 138
+ I P PS+ + + + + + KI ++ P
Sbjct: 185 APVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPH 244
Query: 139 MNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEF 198
DVKV + + + + + + + + + P+ ++
Sbjct: 245 FAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSE----------HREFYKAFVTPEVVDA 294
Query: 199 EKIKAEVKDGVLYITIPK 216
K +AE+ DG++ + P
Sbjct: 295 SKTQAEIVDGLMVVEAPL 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 50/109 (45%)
Query: 16 ITGFPS--YRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLNQSQ-P-KKRAA------ 65
++G P Y LR + KA S L+QS+ P +R
Sbjct: 379 VSGPPQSLYGLNLTLR------KAKA------------PSGLDQSRIPFSERKLKFSNRF 420
Query: 66 -PVSSPGIWDSF------PAARTVQQMMETMERIMEDPFAYGVTWPSQQ 107
PV+SP F PA+ + I +D V++ ++
Sbjct: 421 LPVASP-----FHSHLLVPAS----------DLINKDLVKNNVSFNAKD 454
Score = 38.9 bits (90), Expect = 0.001
Identities = 35/228 (15%), Positives = 62/228 (27%), Gaps = 98/228 (42%)
Query: 1 MASYLGICTPCASERITGFPSYRSPPLLRNRDFCG---RIKAVADNRGSLDHLQRSSLNQ 57
+A Y+ ++ GF +P LR+ G + +
Sbjct: 246 LAHYVVTA------KLLGF----TPGELRSY-LKGATGHSQGLV---------------- 278
Query: 58 SQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRG 117
A ++ W+SF + V++ + + F GV + Y
Sbjct: 279 -----TAVAIAETDSWESFFVS--VRKAITVL-------FFIGVR--CYEA-----YPNT 317
Query: 118 RTPWAIRE--TENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEE 175
P +I E EN+ VP ML I ++ + +
Sbjct: 318 SLPPSILEDSLENN----EGVPS------------PMLSISNLTQEQVQDYVNK------ 355
Query: 176 EEWPTNGYGSYNTR--IAL---PDNI--------------EFEKIKAE 204
TN + + I+L N+ K KA
Sbjct: 356 ----TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Score = 37.3 bits (86), Expect = 0.003
Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 72/187 (38%)
Query: 57 Q-SQPKKRAAPVSSPG----IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVR 111
Q SQ G ++ + AA+ V + +D YG S + V
Sbjct: 1624 QGSQ---------EQGMGMDLYKTSKAAQDV---WNRADNHFKD--TYGF---SILDIVI 1666
Query: 112 S---------GYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQR 162
+ G +G+ IR EN + F+ D K++ E+ + K +
Sbjct: 1667 NNPVNLTIHFGGEKGK---RIR--ENYSAMIFETI----VDGKLKTEK---IFK----EI 1710
Query: 163 NEASTDGSTVGEEEE-WPTNGYGSYNT-------RIALPDNIEFEKIKAEVKDGVLYITI 214
NE ST + E+ T T A FE +K++ G+ I
Sbjct: 1711 NEHSTSYTFRSEKGLLSAT-----QFTQPALTLMEKAA-----FEDLKSK---GL----I 1753
Query: 215 PKASSTA 221
P ++ A
Sbjct: 1754 PADATFA 1760
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.042
Identities = 30/206 (14%), Positives = 71/206 (34%), Gaps = 45/206 (21%)
Query: 31 RDF-CGRI----KAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIW--DSFPAARTVQ 83
+F C + K++ +DH+ + + W S VQ
Sbjct: 31 DNFDCKDVQDMPKSILSKE-EIDHI----IMSKDAVSGTLRL----FWTLLSKQE-EMVQ 80
Query: 84 QMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRF--DVPGMNR 141
+ +E + RI + Y +++ R+ P + + + R D +
Sbjct: 81 KFVEEVLRI--N---YKFLM----SPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 142 NDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNG-YGSYNTRIALPDNIEFEK 200
+V R++ +K +A + +G GS T +AL D K
Sbjct: 129 YNVS-RLQ---PYLKLRQALLELRPAKNVLI--------DGVLGSGKTWVAL-DVCLSYK 175
Query: 201 IKAEVKDGVLYITIPKASSTAKIVDI 226
++ ++ + ++ + +S ++++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEM 201
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.052
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 15/44 (34%)
Query: 44 RGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMME 87
+ +L LQ +SL K A S+P A ++ ME
Sbjct: 19 KQALKKLQ-ASL------KLYADDSAP--------ALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.21
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 17/67 (25%)
Query: 141 RNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEK 200
R + + R++E ++ E + EEW + ++ EK
Sbjct: 91 REEQRKRLQE-----LDAASKVMEQEWREKAKKDLEEW----NQRQSEQV--------EK 133
Query: 201 IKAEVKD 207
K +
Sbjct: 134 NKINNRI 140
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 29.5 bits (67), Expect = 0.71
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 184 GSYNTRIALPDNIEFEKIKAEVKDGVLYITI--PKA 217
G+ + P ++ +E I E V IT+ P+A
Sbjct: 10 GTLEAQTQGPGSMTYETILVERDQRVGIITLNRPQA 45
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 29.5 bits (66), Expect = 0.84
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 120 PWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRN 163
P I ++ ++R +PG ++ VK+ + ++A +RN
Sbjct: 297 PKPITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRN 340
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 29.0 bits (66), Expect = 1.0
Identities = 4/23 (17%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
+ + + +DG+ I + K+
Sbjct: 7 KKQYLTVFKEDGIAEIHLHINKS 29
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 29.4 bits (66), Expect = 1.0
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 173 GEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITI 214
G E T G GS I D + + EV D V IT
Sbjct: 10 GTLEAQ-TQGPGSMTHAIRPVDFDNLKTMTYEVTDRVARITF 50
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 29.1 bits (66), Expect = 1.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
F+ IK EV IT+ P A
Sbjct: 9 SFDTIKYEVDGHTATITLNRPDA 31
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 29.0 bits (66), Expect = 1.2
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
EF I A + V I + P
Sbjct: 3 EFVSIAARQEGAVGIIELARPDV 25
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 29.1 bits (66), Expect = 1.2
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 185 SYNTRIALPDNIEFEKIKAEVKDGVLYITI--PKA 217
+ NT + E + L +T+ P
Sbjct: 6 APNTSETPANGESGPDALVEQRGHTLIVTMNRPSR 40
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 28.6 bits (65), Expect = 1.3
Identities = 2/23 (8%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
++ + + V I +
Sbjct: 2 SYQYVNVVTINKVAVIEFNYGRK 24
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 28.7 bits (65), Expect = 1.4
Identities = 5/23 (21%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
++ +K E++DG+ ++ + P+
Sbjct: 7 RWKTVKVEIEDGIAFVILNRPEK 29
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 28.6 bits (65), Expect = 1.5
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
+ AE + V+ ITI P+A
Sbjct: 7 DAPGALAERRGNVMVITINRPEA 29
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 28.2 bits (64), Expect = 1.7
Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
++ E V+ +T+ P
Sbjct: 7 AARELLVERDGPVVILTMNRPHR 29
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 28.3 bits (64), Expect = 1.9
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
++E ++ VL I + P
Sbjct: 7 DYETLRIRRDGYVLVIGLNRPAK 29
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 28.3 bits (64), Expect = 1.9
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
+ + + VL I + PK
Sbjct: 14 DPSTLVVDTVGPVLTIGLNRPKK 36
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 28.0 bits (63), Expect = 2.5
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 189 RIALPDNIEFEKIKAEVKDGVLYITI--PKA 217
R + P+ I +V D + IT+ P+A
Sbjct: 10 RPSRPEQRTEMYIDYDVSDRIATITLNRPEA 40
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 27.9 bits (63), Expect = 2.9
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
E+++IK E +G+ +TI P+
Sbjct: 11 EYDEIKYEFYEGIAKVTINRPEV 33
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 27.6 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 198 FEKIKAEVKDGVLYITIPKA-SST-------AKIVDINV 228
+ K K E D VL +T+ S T +K VDI V
Sbjct: 100 YLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPV 138
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics,
joint center F structural genomics, JCSG; HET: PG4;
2.07A {Bacteroides fragilis nctc 9343}
Length = 221
Score = 27.2 bits (60), Expect = 3.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 184 GSYNTRIALPDNIEFEKIKAEVKDGVLYITIPK 216
G + +I PDNI I+ VKD L+++I K
Sbjct: 40 GKTDLQIYGPDNI-VALIQVAVKDNTLFLSIDK 71
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 27.5 bits (62), Expect = 3.9
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 195 NIEFEKIKAEVKDGVLYITI--PKA 217
N + + V+D + T+ A
Sbjct: 2 NAMLKFLSVRVEDHIAVATLNHAPA 26
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 27.5 bits (61), Expect = 4.5
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
E E + E +DGV +T+
Sbjct: 165 EMEAVHLERRDGVARLTMCRDDR 187
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 27.2 bits (61), Expect = 4.6
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 197 EFEKIKAEVKDGVLYITI 214
+E IKA + VL T
Sbjct: 6 SYETIKARLDGTVLSATF 23
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 26.8 bits (60), Expect = 5.4
Identities = 4/23 (17%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
+ + + D V +T+ P++
Sbjct: 7 DSPVLLVDTTDRVRTLTLNRPQS 29
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 27.1 bits (61), Expect = 5.8
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 19/63 (30%)
Query: 32 DFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMER 91
D C R NR L+ L S G +D R +M ++
Sbjct: 864 DLCARTDTKKLNRRVLEKLIMS-----------------GAFDRLGPHR--AALMNSLGD 904
Query: 92 IME 94
++
Sbjct: 905 ALK 907
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 26.8 bits (60), Expect = 5.9
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
++ I G+ I I P
Sbjct: 8 HYDDILYYKAGGIAKIVINRPHK 30
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 26.8 bits (60), Expect = 5.9
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 197 EFEKIKAEVKDGVLYITI 214
+ ++ + GV I +
Sbjct: 7 AYSTLRVSSEHGVARIIL 24
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 26.4 bits (59), Expect = 7.0
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
+ E+++ LYIT+ P+
Sbjct: 2 SLSYVHTEIQNDALYITLDYPEK 24
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta
protein, PSI, protein struct initiative; HET: TLA; 1.50A
{Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Length = 242
Score = 26.5 bits (58), Expect = 7.3
Identities = 20/189 (10%), Positives = 46/189 (24%), Gaps = 36/189 (19%)
Query: 16 ITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDS 75
I P Y ++ K ++ + S K + S
Sbjct: 84 IISSPVY-------LQNVSVDTKNF------IERIGGWSHLFRLAGKFVVTLDVAESNGS 130
Query: 76 FPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFD 135
+ ++ + M + + + E + +
Sbjct: 131 DNVSEYLRDIFSYMGGQILHQVSITNSLKDIAE------------------AQLMEATYK 172
Query: 136 VPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDN 195
+ + +K + + +A + + S E+ W N+ L +
Sbjct: 173 IEDVLEGKIKYKTTDYQE--RAYQTLKLILENYDSEHFEKMYWEKKRLFEANS---LEEW 227
Query: 196 IEFEKIKAE 204
E IK E
Sbjct: 228 YYVENIKLE 236
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 26.5 bits (59), Expect = 7.8
Identities = 4/42 (9%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 179 PTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITI---PKA 217
++ + +++ + + + I + +DG I +
Sbjct: 3 SSHHHHHHSSGLVPRGSSTYRDIVVKKEDGFTQIVLSTRSTE 44
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 26.4 bits (59), Expect = 8.6
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
++E I+ E GVL +T+
Sbjct: 14 KYENIRLERDGGVLLVTVHTEGK 36
>2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative;
hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB:
2xcy_A* 2xzj_A* 2xzk_A*
Length = 386
Score = 26.3 bits (56), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 17 TGFPSYRSPPLLRNRDFCGRIKAVADNR 44
GF S+R P ++R GRI A A+ R
Sbjct: 33 IGFHSFRIPAVVRTTT--GRILAFAEGR 58
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 26.0 bits (58), Expect = 9.8
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 197 EFEKIKAEVKDGVLYITI--PKA 217
++ E +D +L ITI PKA
Sbjct: 13 TEPEVLVEQRDRILIITINRPKA 35
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H
binding protein complex; HET: CSS HEC; 1.77A {Starkeya
novella} PDB: 3ocd_A*
Length = 275
Score = 26.3 bits (57), Expect = 9.9
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 57 QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMER 91
Q+ P+ + ++P R Q + TM+
Sbjct: 197 QALPQLDVPGKDAQLTMATWPTYRVSQSALRTMQH 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.388
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,514,279
Number of extensions: 203047
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 55
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)