RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027048
(229 letters)
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 79.3 bits (195), Expect = 9e-20
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 116 RGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEE 175
+G P +I E + K+ +PG+N+ D+ + L I+A+++ ++
Sbjct: 8 KGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESER-----I 62
Query: 176 EEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKA-SSTAKIVDI 226
I LP ++ E A+ ++GVL + +PKA SS K ++I
Sbjct: 63 IYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 114
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 72.1 bits (176), Expect = 1e-16
Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 89 MERIMEDPF-AYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVR 147
+ DPF + P+ +ET + + D+PG+ + +VKV
Sbjct: 12 FADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVE 71
Query: 148 VEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKD 207
VE+ +++ + + + + + ++ G + R L ++ + E++KA +++
Sbjct: 72 VEDGNVLVVSGERTKEKEDKN-----DKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN 126
Query: 208 GVLYITIPK---ASSTAKIVDIN 227
GVL +T+PK K + I+
Sbjct: 127 GVLTVTVPKAEVKKPEVKAIQIS 149
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 27.6 bits (61), Expect = 0.47
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 23/103 (22%)
Query: 118 RTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEE 177
+ W +TE+ I + + +NDV V E L
Sbjct: 4 KYDWY--QTESQVVITLMIKNVQKNDVNVEFSEKELSAL--------------------- 40
Query: 178 WPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASST 220
YN ++ L I E+ +V + I + K +
Sbjct: 41 VKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAV 83
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 360
Score = 26.7 bits (59), Expect = 2.8
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 55 LNQSQPKKRAAPVSSPGIWDSFPAARTVQQ-MMETMERIMEDPFAYG 100
S P + S + D+ A + +E + +DP ++G
Sbjct: 44 FANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHG 90
>d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal
domain {Micromonospora viridifaciens [TaxId: 1881]}
Length = 356
Score = 26.7 bits (57), Expect = 3.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 18 GFPSYRSPPLLRNRDFCGRIKAVADNR 44
GFP+YR P L D G + A D R
Sbjct: 17 GFPNYRIPALTVTPD--GDLLASYDGR 41
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas
sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 26.3 bits (56), Expect = 3.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 198 FEKIKAEVKDGVLYITI 214
+E I V+DGV ITI
Sbjct: 2 YEAIGHRVEDGVAEITI 18
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 26.2 bits (56), Expect = 3.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 197 EFEKIKAEVKDGVLYITI 214
++E I+ E GVL +T+
Sbjct: 11 KYENIRLERDGGVLLVTV 28
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon
Sulfolobus solfataricus [TaxId: 2287]}
Length = 115
Score = 25.6 bits (56), Expect = 3.3
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 129 DYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEE-EWPTNGYGSYN 187
+ K+ P M +V VRV + + + + + VG+E +G +
Sbjct: 2 EEKVGNLKPNMESVNVTVRV-LEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA 60
Query: 188 TRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINV 228
I ++ E G + + + A+ +
Sbjct: 61 GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGF 101
>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens
[TaxId: 1502]}
Length = 471
Score = 26.3 bits (58), Expect = 3.6
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 168 DGSTVGEEEEWPTNGYG---SYNTRIALPDNIEFEKIKAEVKDGVLY 211
+G+ V + W N Y+T I L N +IKA G+ +
Sbjct: 389 EGNEVLTHKTWDGNYQDKTAHYSTVIPLEANARNIRIKARECTGLAW 435
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 25.9 bits (55), Expect = 3.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 198 FEKIKAEVKDGVLYITI 214
FE + +DG+ I
Sbjct: 2 FETLVVTSEDGITKIMF 18
>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate
reductoisomerase {Escherichia coli [TaxId: 562]}
Length = 26
Score = 23.0 bits (50), Expect = 4.9
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 93 MEDPFAYGVTWPSQQERVRSG 113
M P A+ + WP RV SG
Sbjct: 1 MRTPIAHTMAWP---NRVNSG 18
>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 216
Score = 25.6 bits (55), Expect = 5.2
Identities = 14/101 (13%), Positives = 23/101 (22%)
Query: 78 AARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVP 137
AR + + + R A P + V RRG A E D
Sbjct: 54 VARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGV 113
Query: 138 GMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEW 178
+ + ++ K + E
Sbjct: 114 DVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRP 154
>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum
sulfidophilum [TaxId: 35806]}
Length = 111
Score = 24.5 bits (53), Expect = 7.4
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 60 PKKRAAPVSSPGIWDSFPAARTVQQMMETMER 91
A S G + FP+ R + +
Sbjct: 36 DHYIRADHLSQGQINGFPSYRLKNARLNAVHD 67
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc
43554 [TaxId: 232]}
Length = 464
Score = 25.0 bits (54), Expect = 9.0
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 110 VRSGYRR--GRTPWAIRETEND 129
++ Y R G T WA R T+ D
Sbjct: 310 AQTPYARGNGGTRWAARVTQKD 331
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 24.6 bits (52), Expect = 9.9
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 197 EFEKIKAEVKDGVLYITI 214
+ EKI ++ I +
Sbjct: 3 QNEKISYRIEGPFFIIHL 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.388
Gapped
Lambda K H
0.267 0.0390 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 858,728
Number of extensions: 38872
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 18
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)