BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027050
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/229 (84%), Positives = 220/229 (96%)
Query: 1 MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLS 60
ME+VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRND+
Sbjct: 1 MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMV 60
Query: 61 SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLM 120
SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLM
Sbjct: 61 SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120
Query: 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAA 180
KAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDSED+EEEI+EEVDKVLTAIAGETAA
Sbjct: 121 KAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAA 180
Query: 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229
+LP AVRKER+K AQ + ++EE+AVAEG+DDE+ELEEIRARLAKVRS
Sbjct: 181 ELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229
>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2
OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1
Length = 200
Score = 264 bits (675), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/199 (72%), Positives = 169/199 (84%)
Query: 31 NIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSIS 90
I+ + DI+REE+NV KAIKD+ KRNDL +AK+LA+E+V SR+TV RLYENKAQ+NSIS
Sbjct: 2 TIKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSIS 61
Query: 91 MHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAV 150
MHLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAV
Sbjct: 62 MHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAV 121
Query: 151 DTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEG 210
D ALDSEDIEEEIEEEVDKVLTAIAGETAA+LPEAVRK+++ AQ + EDA+ EG
Sbjct: 122 DNALDSEDIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEG 181
Query: 211 IDDEKELEEIRARLAKVRS 229
+D E+ELE IR RLA VRS
Sbjct: 182 VDAEEELEAIRYRLANVRS 200
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 119/173 (68%)
Query: 14 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSR 73
P+ L+ +W K+R+E R I+RQIRDIQRE++ V+++IK++AK+ + + LA+E+V+S+
Sbjct: 12 PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSK 71
Query: 74 KTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFS 133
K VN+LY +KA MNS+ M + +A+ R G L KS EVMK + NL+K PE+ ATM+E S
Sbjct: 72 KAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELS 131
Query: 134 KEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
KEM KAG+IEE + D + D +++EE+ E E+D++L + + P V
Sbjct: 132 KEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAPSKV 184
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 118/173 (68%)
Query: 14 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSR 73
P+ L+ +W K+R+E R I+RQIRDIQRE++ V+++IK++AK+ + + LA+E+V S+
Sbjct: 12 PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSK 71
Query: 74 KTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFS 133
K VN+LY +KA MNS+ M + +A+ R G L KS EVMK + NL+K PE+ ATM++ S
Sbjct: 72 KAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLS 131
Query: 134 KEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
KEM KAG+IEE + D + D +++EE+ E E+D++L I + P V
Sbjct: 132 KEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
KP P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++
Sbjct: 10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 68
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
E SKEM KAG+IEE + D ++ D E++EEE E E+D++L I + P V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
KP P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++
Sbjct: 10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMI 68
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
E SKEM KAG+IEE + D ++ D E++EE E E+D++L I + P V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
KP P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++
Sbjct: 10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMI 68
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
E SKEM KAG+IEE + D ++ D E++EE E E+D++L I + P V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
KP P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++
Sbjct: 10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 68
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
E SKEM KAG+IEE + D ++ D E++EE E E+D++L I + P V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
KP P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++
Sbjct: 10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMI 68
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMR 128
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
E SKEM KAG+IEE + D ++ D E++EE E E+D++L I + P V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
KP P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++
Sbjct: 10 KP-PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 68
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 128
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
E SKEM KAG+IEE + D ++ D E++EEE E E+D++L I + P V
Sbjct: 129 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKV 184
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
KP P+ L+ +W K+R+E R I+RQIRDIQREE+ V+++IKDAAK+ LA+E++
Sbjct: 10 KP-PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMI 68
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
+S++ +N+LY +KAQMNS+ + + +++ R G L KS EVMK + +L+K PE+ ATM+
Sbjct: 69 QSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMR 128
Query: 131 EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186
+ SKEM KAG+IEE + D ++ D E++EE E EVDK+L I + P V
Sbjct: 129 DLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEITAGALGKAPSKV 184
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 97/141 (68%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
KP P++L++ W+R+LR+E R ++ Q+R I +EK + IK+ K D SAK+LA+E+V
Sbjct: 7 KPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAKEIV 66
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQ 130
SRK R+Y KAQMNS+SM L ++A+ + G+L KS E+MK++N+L+K PE+ M
Sbjct: 67 NSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMM 126
Query: 131 EFSKEMTKAGVIEEFVNDAVD 151
EMTKAG++EE ++D D
Sbjct: 127 AMGSEMTKAGIMEEMISDVFD 147
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 106/167 (63%), Gaps = 1/167 (0%)
Query: 12 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVR 71
P+P++ R + LR+ RNIE+ +R++ + Q+ IK +AK+ND+ + + A+EL +
Sbjct: 11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRLYAKELYQ 70
Query: 72 SRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQE 131
K +R+Y ++AQ++S+ M + E++ + + SA +M+ VN+L++ P++ TM E
Sbjct: 71 INKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIE 130
Query: 132 FSKEMTKAGVIEEFVNDAVDTALD-SEDIEEEIEEEVDKVLTAIAGE 177
KE+ K+G+I E V+D +++ D E+++E ++EEV+K++ E
Sbjct: 131 LEKELMKSGIISEMVDDTMESVGDVGEEMDEAVDEEVNKIVEQYTNE 177
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 14/224 (6%)
Query: 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKS 64
MN+ KPNP+++LR+ +R++ Q R IE++I +Q EEK + IK AK + + K
Sbjct: 1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60
Query: 65 LAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPE 124
LA++L+R R+ + L ++AQM I+ H A + + + M ++ M +
Sbjct: 61 LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120
Query: 125 VAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPE 184
A M+EF K+ + + E ++D++D ALD+++ E+E E+ ++VL I + A+QL
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180
Query: 185 AVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVR 228
A + + + A ED + GID E+ RLA +R
Sbjct: 181 APKGKIGGKKA--------EDVGSSGID------ELEKRLAALR 210
>sp|O14296|VPS24_SCHPO Vacuolar protein sorting-associated protein 24
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps24 PE=3 SV=1
Length = 231
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Query: 12 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVR 71
P PQ+ R WQ +R+E R ++RQ+ ++ K + +K AK++D+++ + LA+E+ R
Sbjct: 11 PTPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIAR 70
Query: 72 SRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQE 131
+ + RL E+KA + S+S+ L + +A+ + G + S ++M+ V++L++ P+++ TM+
Sbjct: 71 ANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRN 130
Query: 132 FSKEMTKAGVIEEFVNDAVDTALDSE---DIEEEIEEEVDKVLT 172
S E+TKAGV+EE ++ D E D+ +E +EEV ++LT
Sbjct: 131 LSMELTKAGVLEEMRDEMFLPVEDDEELMDLADE-DEEVQEILT 173
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 105/184 (57%), Gaps = 6/184 (3%)
Query: 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKS 64
M + + P+++LR+ QR L + R I+R+ +Q +EK + IK AK+ ++SAK
Sbjct: 1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKI 60
Query: 65 LAQELVRSRKTVNRLYENKAQMNSISMH---LGESVAIARTVGHLNKSAEVMKLVNNLMK 121
+A++LVR+R + + YE K Q+ ++S+ L + A+A + + K+ M +N M
Sbjct: 61 MAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKA---MITMNRQMN 117
Query: 122 APEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQ 181
P+ M EF ++ K + EE +ND +D ++ + EE+ +E +++VL I + A+Q
Sbjct: 118 LPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQ 177
Query: 182 LPEA 185
L +A
Sbjct: 178 LVDA 181
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%)
Query: 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKS 64
MN+ K K P+ LR +R++ R IER+I +Q EEK + IK AK + ++ K
Sbjct: 1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60
Query: 65 LAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPE 124
LA++LVR R+ + L ++AQ+ ++ H A + + + M +N M +
Sbjct: 61 LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120
Query: 125 VAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPE 184
A +++F K+ + + E +++A+D LD ++ EEE E+ ++VL I A+QL
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180
Query: 185 A 185
A
Sbjct: 181 A 181
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 102/189 (53%)
Query: 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76
++++ R+LR R I R ++++E+ ++ IK AK + + K LA++LV+ RK
Sbjct: 13 IIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQK 72
Query: 77 NRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEM 136
NR Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE
Sbjct: 73 NRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Query: 137 TKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQ 196
K + EE +ND +D D+ D EEE ++ V++VL I E + ++ +A R SA
Sbjct: 133 MKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSAS 192
Query: 197 TSRAAQEED 205
TS+A+ D
Sbjct: 193 TSKASTISD 201
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76
+++D ++L+ + R I R ++++EK ++ IK AK + + K LA++LV+ RK
Sbjct: 13 IIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQK 72
Query: 77 NRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEM 136
R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE
Sbjct: 73 TRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Query: 137 TKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQ 196
K + EE +ND +D D+ + EEE ++ V++VL I E + ++ +A + SA
Sbjct: 133 MKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSAS 192
Query: 197 TSRAAQEEDAVAEGIDDE 214
S++ GI DE
Sbjct: 193 ASKST--------GISDE 202
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 97/185 (52%)
Query: 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76
++++ R+LR R I R ++++EK ++ IK AK + + K LA++LV RK
Sbjct: 13 VIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQK 72
Query: 77 NRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEM 136
R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE
Sbjct: 73 TRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Query: 137 TKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQ 196
K + EE +ND +D D D EEE ++ V++VL I E + ++ +A R SA
Sbjct: 133 MKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSAS 192
Query: 197 TSRAA 201
TS+A
Sbjct: 193 TSKAT 197
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 97/185 (52%)
Query: 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76
++++ R+LR R I R ++++EK ++ IK AK + + K LA++LV RK
Sbjct: 13 VIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQK 72
Query: 77 NRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEM 136
R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE
Sbjct: 73 TRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Query: 137 TKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQ 196
K + EE +ND +D D D EEE ++ V++VL I E + ++ +A R SA
Sbjct: 133 MKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSAS 192
Query: 197 TSRAA 201
TS+A
Sbjct: 193 TSKAT 197
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 8/198 (4%)
Query: 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76
++R+ ++LR R I R ++++EK ++ IK AK + + + LA++LV+ RK
Sbjct: 13 IIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQK 72
Query: 77 NRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEM 136
R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE
Sbjct: 73 TRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Query: 137 TKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQ 196
K + EE +ND +D D+ D EEE ++ V++VL I E + ++ +A + S
Sbjct: 133 MKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTS 192
Query: 197 TSRAAQEEDAVAEGIDDE 214
S+++ GI DE
Sbjct: 193 ASKSS--------GISDE 202
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76
++++ R+LR R I R ++++EK ++ IK AK + + + LA++LV RK
Sbjct: 13 VIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQK 72
Query: 77 NRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEM 136
R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE
Sbjct: 73 TRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Query: 137 TKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQ 196
K + EE +ND +D D D EEE ++ V++VL I E + ++ +A R SA
Sbjct: 133 MKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSAS 192
Query: 197 TSRAAQEEDAV-----AEGID 212
TS+A ++ + A G+D
Sbjct: 193 TSKATISDEEIERQLKALGVD 213
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76
++++ R+LR R I R ++++EK ++ IK AK + + + LA++LV RK
Sbjct: 13 VIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQK 72
Query: 77 NRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEM 136
R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE
Sbjct: 73 TRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Query: 137 TKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQ 196
K + EE +ND +D D D EEE ++ V++VL I E + ++ +A R SA
Sbjct: 133 MKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSAS 192
Query: 197 TSRAAQEEDAV-----AEGID 212
TS++ ++ + A G+D
Sbjct: 193 TSKSTISDEEIERQLKALGVD 213
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 92/169 (54%)
Query: 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76
++R+ ++LR R I R ++++EK ++ IK AK + + + LA++LV+ RK
Sbjct: 13 IIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQK 72
Query: 77 NRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEM 136
R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE
Sbjct: 73 TRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Query: 137 TKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEA 185
K + +E +ND +D D+ + EEE ++ V++VL I E + ++ +A
Sbjct: 133 MKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKA 181
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 8/210 (3%)
Query: 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKS 64
M + K ++++ ++LR R I R ++++EK ++ IK AK + + K
Sbjct: 1 MTSLFKKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKV 60
Query: 65 LAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPE 124
LA++LV+ RK R Y +++ S+S + + G + + + M+ VN M +
Sbjct: 61 LAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKK 120
Query: 125 VAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPE 184
T+Q F KE K + EE +ND +D + EEE ++ V++VL I E + ++
Sbjct: 121 TMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAH 180
Query: 185 AVRKERVKQSAQTSRAAQEEDAVAEGIDDE 214
A R SA T++ A+GI DE
Sbjct: 181 APSAARKTPSAATAK--------ADGISDE 202
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 4 VMNMIKPK-PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSA 62
+MN I K P +LLR+ +R L + R IER+ + +Q +EK + IK AK+ + +
Sbjct: 1 MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAV 60
Query: 63 KSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS-AEVMKLVNNLMK 121
K +A++L+R+R + + Y+ K+Q+ +S+ + +++ + +G K + M +N M
Sbjct: 61 KVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMN 119
Query: 122 APEVAATMQEFSKEMTKAGVIEEFVNDAV 150
P + MQEF ++ K ++ E + DA+
Sbjct: 120 LPSLQKIMQEFERQNEKMEMVSEVMGDAI 148
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 95/170 (55%), Gaps = 1/170 (0%)
Query: 14 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSR 73
PQ+ L+ QR L + R +ER+ R ++ ++K + IK +AK +++AK A++LVR+R
Sbjct: 14 PQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTR 73
Query: 74 KTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFS 133
+ + KAQ+ +IS+ + + + ++++ ++ +N M P++ EF
Sbjct: 74 NYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFE 133
Query: 134 KEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEE-VDKVLTAIAGETAAQL 182
K+ G +EF+++A+D + E E+E +E V+KVL I + +QL
Sbjct: 134 KQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
+ P++LLR QR L + R ++R+ + ++++EK + IK AK+ + + K +A++LV
Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLV 67
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLV-------NNLMKAP 123
R+R+ V + +A + ++S+ + +T+ N A+ MK V N +K P
Sbjct: 68 RTRRYVKKFIMMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120
Query: 124 EVAATMQEFSKEMTKAGVIEEFVNDAV 150
++ M EF K+ + EE +NDA+
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAI 147
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 79/144 (54%), Gaps = 14/144 (9%)
Query: 14 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSR 73
P+++LR QR L + R ++R+ + ++++EK + IK AK+ + + K +A++LVR+R
Sbjct: 11 PEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTR 70
Query: 74 KTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLV-------NNLMKAPEVA 126
+ V + +A + ++S+ + +T+ N A+ MK V N +K P++
Sbjct: 71 RYVKKFIMMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQ 123
Query: 127 ATMQEFSKEMTKAGVIEEFVNDAV 150
M EF K+ + EE +NDA+
Sbjct: 124 KIMMEFEKQSEIMDMKEEMMNDAI 147
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 80/144 (55%), Gaps = 14/144 (9%)
Query: 14 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSR 73
P+++LR QR L + R+++R+ + ++++EK + IK AK+ + + K +A++LVR+R
Sbjct: 11 PEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTR 70
Query: 74 KTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLV-------NNLMKAPEVA 126
+ V + +A + ++S+ + +T+ N A+ MK V N +K P++
Sbjct: 71 RYVKKFIMMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQ 123
Query: 127 ATMQEFSKEMTKAGVIEEFVNDAV 150
M EF ++ + EE +NDA+
Sbjct: 124 KIMMEFERQSEIMDMKEEMMNDAI 147
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
+ P++LLR QR L + R ++R+ + ++ +EK + IK AK+ + + + +A++LV
Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLV 67
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLV-------NNLMKAP 123
R+R+ V + +A + ++S+ + +T+ N A+ MK V N +K P
Sbjct: 68 RTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120
Query: 124 EVAATMQEFSKEMTKAGVIEEFVNDAV 150
++ M EF ++ + EE +NDA+
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAI 147
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV 70
+ P++LLR QR L + R ++R+ + ++ +EK + IK AK+ + + + +A++LV
Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLV 67
Query: 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLV-------NNLMKAP 123
R+R+ V + +A + ++S+ + +T+ N A+ MK V N +K P
Sbjct: 68 RTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120
Query: 124 EVAATMQEFSKEMTKAGVIEEFVNDAV 150
++ M EF ++ + EE +NDA+
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAI 147
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 81/146 (55%), Gaps = 16/146 (10%)
Query: 13 NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRS 72
P++LLR QR L + R ++R+ + ++ +EK + IK AK+ + + K +A++LVR+
Sbjct: 10 TPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRT 69
Query: 73 RKTVNRLYENKAQMNSISMHL-----GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAA 127
R+ V + +A + ++S+ + S+A+A + + M +N +K P++
Sbjct: 70 RRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKGVTKAMATMNRQLKLPQIQK 124
Query: 128 TMQEFSKEMTKAGVI---EEFVNDAV 150
M EF K+ AG++ EE +NDA+
Sbjct: 125 IMMEFEKQ---AGIMDMKEELMNDAI 147
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 92/173 (53%), Gaps = 1/173 (0%)
Query: 13 NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRS 72
+PQ+ LR QR L + R ++R+ + + E+ + + IK +AK + +A+ A++L+R
Sbjct: 13 SPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRL 72
Query: 73 RKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEF 132
R + ++ K Q+ +IS+ L + + + + ++ +N M P +A Q+F
Sbjct: 73 RNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQF 132
Query: 133 SKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEA 185
+E +E +++ +D A ED EEE +E V+KVL I + + LP+A
Sbjct: 133 ERENEIMEQRQEMIDENMDDA-LEEDDEEEADELVNKVLDEIGVDLSQGLPDA 184
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAK--RNDLSSAKSLAQE 68
K P+Q L+D +R+L + R ++R++ ++ E+ IK AK RND AK +A +
Sbjct: 8 KKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRND--EAKRMAND 65
Query: 69 LVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAAT 128
LV+ R + R+ K ++++S A + + + M +N ++ T
Sbjct: 66 LVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASATKAMSTMNKQTDLVQLQKT 125
Query: 129 MQEFSKEMTKAGVIEEFV 146
M E+ K+ + + EE +
Sbjct: 126 MMEYEKQTQRVEMTEEMM 143
>sp|A4SH15|PGK_PROVI Phosphoglycerate kinase OS=Prosthecochloris vibrioformis (strain
DSM 265) GN=pgk PE=3 SV=1
Length = 397
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 31 NIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSIS 90
N ER+I D +K + +A+ K D L L R + VN ++ +S
Sbjct: 27 NDEREITD----DKRIVEALPSIRKILDNGGRLILMSHLGRPKGKVNPIFSLAPVAAKLS 82
Query: 91 MHLGESVAIAR-TVG-HLNKSA------EVMKLVNNLMKAPEVAATMQEFSKEMTKAGVI 142
+ VA+A +G + +SA EVM L+ NL PE A EF+KE+ G
Sbjct: 83 ELIDTPVAMAEDCIGTEVMQSALALQDGEVM-LLENLRFHPEEEANDPEFAKELAALG-- 139
Query: 143 EEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAG 176
E +VNDA TA + E I V TA+AG
Sbjct: 140 EMYVNDAFGTAHRAHASTEGITHFVP---TAVAG 170
>sp|Q9HRW3|RAD50_HALSA DNA double-strand break repair Rad50 ATPase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=rad50 PE=3 SV=1
Length = 883
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 108 KSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEV 167
+ EV KL+N AP +T Q+ + + G +EE+ A D L ED++ +E ++
Sbjct: 136 RQGEVNKLIN---AAP---STRQDMIDALLQLGKLEEYRQRAGDARLGVEDVKSNVEGQL 189
Query: 168 DKVLTAIAGETAA 180
D++ IA + AA
Sbjct: 190 DRLADQIADKEAA 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.123 0.313
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,772,713
Number of Sequences: 539616
Number of extensions: 2643832
Number of successful extensions: 21501
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 823
Number of HSP's that attempted gapping in prelim test: 20271
Number of HSP's gapped (non-prelim): 1825
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)