Query 027050
Match_columns 229
No_of_seqs 129 out of 726
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230 Vacuolar assembly/sort 100.0 1.3E-55 2.9E-60 362.1 24.6 222 5-229 1-223 (224)
2 KOG3229 Vacuolar sorting prote 100.0 1.1E-53 2.4E-58 353.4 24.6 224 5-229 4-227 (227)
3 KOG3231 Predicted assembly/vac 100.0 2.9E-46 6.3E-51 300.2 21.9 208 5-229 1-208 (208)
4 KOG3232 Vacuolar assembly/sort 100.0 4.3E-38 9.2E-43 254.5 23.6 198 16-229 5-202 (203)
5 PF03357 Snf7: Snf7; InterPro 99.9 1.6E-24 3.4E-29 177.3 11.9 167 20-188 1-169 (171)
6 KOG1656 Protein involved in gl 99.9 5.4E-21 1.2E-25 158.7 19.5 176 1-187 1-193 (221)
7 PTZ00464 SNF-7-like protein; P 99.8 1.1E-18 2.5E-23 148.5 18.6 183 5-188 2-191 (211)
8 PTZ00446 vacuolar sorting prot 99.7 1.5E-15 3.2E-20 127.3 20.2 153 18-174 25-181 (191)
9 COG5491 VPS24 Conserved protei 99.5 5.1E-13 1.1E-17 112.8 17.5 186 32-229 5-201 (204)
10 KOG2910 Uncharacterized conser 99.3 9.1E-10 2E-14 91.2 20.5 172 5-188 2-177 (209)
11 KOG1655 Protein involved in va 99.0 3.6E-08 7.7E-13 82.2 18.1 166 5-174 2-174 (218)
12 KOG3230 Vacuolar assembly/sort 98.9 3.3E-07 7.1E-12 76.5 18.1 159 21-186 10-178 (224)
13 KOG2911 Uncharacterized conser 98.9 1.9E-07 4.2E-12 86.1 18.1 134 19-152 232-366 (439)
14 KOG3229 Vacuolar sorting prote 97.7 0.0089 1.9E-07 50.7 18.0 173 11-188 5-183 (227)
15 KOG3231 Predicted assembly/vac 97.6 0.004 8.8E-08 51.1 13.9 156 24-184 12-175 (208)
16 PF03357 Snf7: Snf7; InterPro 97.5 0.00051 1.1E-08 55.7 8.2 147 28-182 2-157 (171)
17 PRK10698 phage shock protein P 97.4 0.067 1.5E-06 46.1 20.0 129 10-138 21-174 (222)
18 PTZ00464 SNF-7-like protein; P 97.3 0.088 1.9E-06 45.2 20.3 147 25-174 16-173 (211)
19 COG5491 VPS24 Conserved protei 97.2 0.019 4E-07 49.0 14.6 143 39-184 5-154 (204)
20 PTZ00446 vacuolar sorting prot 97.2 0.019 4.1E-07 48.5 14.5 156 5-172 2-175 (191)
21 TIGR02977 phageshock_pspA phag 96.5 0.46 1E-05 40.7 19.9 129 10-138 21-174 (219)
22 KOG1656 Protein involved in gl 95.6 1.3 2.8E-05 37.7 17.0 133 35-173 29-172 (221)
23 PF04012 PspA_IM30: PspA/IM30 95.4 1.5 3.2E-05 37.3 21.7 139 10-148 20-186 (221)
24 KOG1655 Protein involved in va 94.9 2 4.4E-05 36.4 17.9 96 25-120 17-116 (218)
25 COG1842 PspA Phage shock prote 90.5 11 0.00024 32.7 19.1 130 11-143 22-179 (225)
26 KOG2911 Uncharacterized conser 90.4 16 0.00035 34.5 15.4 93 23-119 229-325 (439)
27 PRK07352 F0F1 ATP synthase sub 89.8 9.9 0.00021 31.1 17.1 49 4-53 35-83 (174)
28 KOG2910 Uncharacterized conser 86.7 18 0.0004 30.6 18.8 93 32-128 14-115 (209)
29 COG1937 Uncharacterized protei 84.8 14 0.0003 27.5 9.0 49 71-119 7-55 (89)
30 PF03398 Ist1: Regulator of Vp 83.8 22 0.00049 29.1 16.4 103 23-128 2-108 (165)
31 PRK06231 F0F1 ATP synthase sub 82.7 29 0.00062 29.5 16.6 49 4-53 64-112 (205)
32 TIGR01144 ATP_synt_b ATP synth 82.2 23 0.00049 27.9 16.8 49 4-53 11-59 (147)
33 PRK13428 F0F1 ATP synthase sub 81.6 49 0.0011 31.4 17.4 133 5-141 18-159 (445)
34 CHL00019 atpF ATP synthase CF0 79.3 34 0.00075 28.2 18.3 48 5-53 41-88 (184)
35 PRK05759 F0F1 ATP synthase sub 77.5 34 0.00073 27.1 16.9 49 5-54 21-69 (156)
36 PRK14473 F0F1 ATP synthase sub 77.4 36 0.00078 27.4 16.5 48 5-53 25-72 (164)
37 PRK13460 F0F1 ATP synthase sub 77.1 39 0.00084 27.6 16.7 48 5-53 33-80 (173)
38 PRK14472 F0F1 ATP synthase sub 76.2 41 0.00089 27.5 17.5 48 5-53 35-82 (175)
39 PRK14474 F0F1 ATP synthase sub 75.3 56 0.0012 28.6 16.8 134 5-142 22-163 (250)
40 KOG3232 Vacuolar assembly/sort 75.1 48 0.001 27.8 16.4 116 70-188 66-182 (203)
41 TIGR03321 alt_F1F0_F0_B altern 73.8 59 0.0013 28.1 17.2 131 5-139 22-160 (246)
42 PRK13461 F0F1 ATP synthase sub 73.3 46 0.001 26.6 17.0 48 5-53 22-69 (159)
43 PRK13455 F0F1 ATP synthase sub 72.9 52 0.0011 27.1 18.4 49 5-53 43-91 (184)
44 PRK15039 transcriptional repre 72.9 36 0.00077 25.2 8.9 48 72-119 8-55 (90)
45 COG1842 PspA Phage shock prote 72.5 64 0.0014 27.9 17.6 38 13-50 17-54 (225)
46 PF08946 Osmo_CC: Osmosensory 71.1 11 0.00023 24.5 4.1 37 13-49 5-41 (46)
47 PF02583 Trns_repr_metal: Meta 70.4 38 0.00083 24.5 10.0 48 72-119 4-51 (85)
48 PRK13453 F0F1 ATP synthase sub 69.7 60 0.0013 26.5 16.7 48 5-53 35-82 (173)
49 PRK14471 F0F1 ATP synthase sub 67.4 64 0.0014 25.9 15.4 48 5-53 25-72 (164)
50 PF11068 YlqD: YlqD protein; 64.8 47 0.001 26.3 7.6 31 21-51 21-51 (131)
51 PF00430 ATP-synt_B: ATP synth 63.3 64 0.0014 24.5 10.4 48 5-53 16-63 (132)
52 PRK11352 regulator protein Frm 61.3 64 0.0014 23.9 9.5 48 72-119 8-55 (91)
53 PF04100 Vps53_N: Vps53-like, 57.1 1.7E+02 0.0036 27.3 22.2 134 2-137 8-171 (383)
54 PRK09720 cybC cytochrome b562; 54.6 31 0.00067 26.2 4.7 35 45-79 61-98 (100)
55 PRK05431 seryl-tRNA synthetase 53.0 2E+02 0.0044 27.1 11.1 69 21-95 29-98 (425)
56 PRK07353 F0F1 ATP synthase sub 50.9 1.2E+02 0.0025 23.6 13.7 48 5-53 22-69 (140)
57 PRK14475 F0F1 ATP synthase sub 50.8 1.3E+02 0.0029 24.3 17.8 39 15-53 36-74 (167)
58 PF05816 TelA: Toxic anion res 49.8 2E+02 0.0044 26.1 15.6 10 218-227 323-332 (333)
59 CHL00118 atpG ATP synthase CF0 49.3 1.4E+02 0.0029 23.9 13.4 46 7-53 41-86 (156)
60 PRK09343 prefoldin subunit bet 48.3 51 0.0011 25.5 5.3 42 18-59 76-117 (121)
61 PF02403 Seryl_tRNA_N: Seryl-t 46.5 1.2E+02 0.0026 22.5 9.5 69 21-95 30-99 (108)
62 COG3783 CybC Soluble cytochrom 43.7 43 0.00093 25.3 3.9 29 50-78 69-97 (100)
63 PF12958 DUF3847: Protein of u 43.1 1.3E+02 0.0029 22.1 8.2 54 23-91 4-58 (86)
64 PF04977 DivIC: Septum formati 42.3 1.1E+02 0.0024 20.9 6.9 43 23-67 20-62 (80)
65 PRK08475 F0F1 ATP synthase sub 41.5 1.9E+02 0.0042 23.5 13.8 47 6-53 40-86 (167)
66 PHA03188 UL14 tegument protein 39.2 2.4E+02 0.0052 23.9 11.9 104 41-154 23-132 (199)
67 TIGR03752 conj_TIGR03752 integ 38.9 3.4E+02 0.0073 26.3 10.1 38 18-55 57-94 (472)
68 COG1382 GimC Prefoldin, chaper 37.6 1.4E+02 0.003 23.4 6.2 42 13-54 70-111 (119)
69 PHA02047 phage lambda Rz1-like 37.4 1.8E+02 0.0039 22.0 7.6 43 16-58 37-79 (101)
70 PF06120 Phage_HK97_TLTM: Tail 37.3 3.2E+02 0.0069 24.8 13.8 34 18-51 72-105 (301)
71 PF10883 DUF2681: Protein of u 35.4 1.2E+02 0.0025 22.4 5.1 39 26-64 29-68 (87)
72 PF07361 Cytochrom_B562: Cytoc 34.8 1E+02 0.0023 23.1 5.0 32 49-80 71-102 (103)
73 TIGR00414 serS seryl-tRNA synt 34.2 4E+02 0.0087 25.0 11.5 73 19-95 29-101 (418)
74 PF12269 zf-CpG_bind_C: CpG bi 34.1 1.9E+02 0.004 25.4 7.0 49 5-53 14-62 (236)
75 PRK15058 cytochrome b562; Prov 33.1 1E+02 0.0022 24.5 4.8 28 51-78 98-125 (128)
76 PF04111 APG6: Autophagy prote 32.8 3.7E+02 0.0081 24.3 12.9 35 18-52 48-82 (314)
77 PRK04863 mukB cell division pr 32.8 7.4E+02 0.016 27.7 17.8 129 4-138 426-569 (1486)
78 PF04508 Pox_A_type_inc: Viral 32.2 71 0.0015 17.7 2.7 18 23-40 4-21 (23)
79 cd00632 Prefoldin_beta Prefold 31.6 2.2E+02 0.0047 21.1 6.5 38 16-53 66-103 (105)
80 PF08405 Calici_PP_N: Viral po 30.9 4.3E+02 0.0092 24.3 9.3 18 3-20 270-288 (358)
81 PF10498 IFT57: Intra-flagella 30.5 4.4E+02 0.0096 24.4 14.2 29 121-149 329-357 (359)
82 PRK00888 ftsB cell division pr 28.5 2.6E+02 0.0056 21.1 6.7 31 23-53 30-60 (105)
83 PF12325 TMF_TATA_bd: TATA ele 28.2 2.9E+02 0.0062 21.5 10.6 42 16-57 19-60 (120)
84 PF04521 Viral_P18: ssRNA posi 27.8 1.9E+02 0.0041 22.6 5.4 38 28-65 73-110 (120)
85 PRK08032 fliD flagellar cappin 27.8 4E+02 0.0086 25.4 8.8 26 71-96 435-460 (462)
86 PF06152 Phage_min_cap2: Phage 27.6 4.5E+02 0.0097 24.2 8.9 27 13-41 300-326 (361)
87 COG3853 TelA Uncharacterized p 27.0 5.4E+02 0.012 24.2 11.6 48 3-53 120-167 (386)
88 PRK07857 hypothetical protein; 26.5 2.6E+02 0.0057 21.3 5.9 38 21-58 29-66 (106)
89 TIGR01215 minE cell division t 25.8 55 0.0012 23.7 2.0 20 1-20 1-20 (81)
90 COG0172 SerS Seryl-tRNA synthe 25.5 6E+02 0.013 24.3 10.6 70 21-95 30-100 (429)
91 PRK13989 cell division topolog 25.2 57 0.0012 23.8 2.0 20 1-20 1-20 (84)
92 cd04776 HTH_GnyR Helix-Turn-He 25.1 3.1E+02 0.0067 20.8 7.5 40 14-53 74-113 (118)
93 PRK09173 F0F1 ATP synthase sub 24.3 3.6E+02 0.0079 21.3 17.2 39 15-53 28-66 (159)
94 PF10115 HlyU: Transcriptional 24.2 40 0.00086 25.2 1.0 12 1-12 1-12 (91)
95 PF04799 Fzo_mitofusin: fzo-li 24.1 3.7E+02 0.0081 22.3 6.8 30 17-46 117-146 (171)
96 TIGR02978 phageshock_pspC phag 23.3 1.7E+02 0.0036 22.9 4.4 27 10-40 78-104 (121)
97 PHA03190 UL14 tegument protein 22.0 4.9E+02 0.011 22.0 11.1 67 78-151 59-125 (196)
98 PF06305 DUF1049: Protein of u 22.0 1.6E+02 0.0035 19.7 3.8 19 24-42 45-63 (68)
99 PF12205 GIT1_C: G protein-cou 21.6 2.4E+02 0.0052 22.1 5.0 39 3-42 53-91 (123)
100 KOG0976 Rho/Rac1-interacting s 21.6 9.6E+02 0.021 25.3 15.1 104 20-134 365-477 (1265)
101 TIGR01808 CM_M_hiGC-arch monof 21.2 3E+02 0.0065 19.2 5.5 35 23-57 3-37 (74)
102 KOG0150 Spliceosomal protein F 20.3 5E+02 0.011 23.8 7.3 52 16-71 31-82 (336)
103 PF03962 Mnd1: Mnd1 family; I 20.2 5.1E+02 0.011 21.5 12.4 61 25-94 67-127 (188)
104 PRK05892 nucleoside diphosphat 20.2 4.7E+02 0.01 21.1 8.7 58 30-96 14-73 (158)
No 1
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-55 Score=362.14 Aligned_cols=222 Identities=27% Similarity=0.434 Sum_probs=196.5
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKA 84 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a 84 (229)
|++||++++|.|.||+++|.|.+++|+|+|++.+++-+|||+..+||+.||.|+.+++||+||+|||+|+++.+|+.+++
T Consensus 1 m~lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka 80 (224)
T KOG3230|consen 1 MDLFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA 80 (224)
T ss_pred CCcccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHH
Q 027050 85 QMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIE 164 (229)
Q Consensus 85 ~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d 164 (229)
+|.+|++++|+..+...++.+|+++|++|..||+.||+|+++++|++|++|++.||+.+|||+|++|++++++++|||+|
T Consensus 81 qiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd 160 (224)
T KOG3230|consen 81 QIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETD 160 (224)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhhCchhhhhhhhhhhhhhh-hhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050 165 EEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTS-RAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229 (229)
Q Consensus 165 ~~v~qvldEig~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~ 229 (229)
++|+|||||||++++++|.++|.. ..+.|.... -.+++..+.++. ..+. .|||++||++||.
T Consensus 161 ~lvnqVLDEiGvdl~~qL~~~P~~-~~~~~~a~~ig~~~a~~~gs~~-~~~~-dddLqaRL~~Lrk 223 (224)
T KOG3230|consen 161 DLVNQVLDEIGVDLASQLSSLPSA-AGSLPIAKTIGGKKAEAAGSEF-HSDA-DDDLQARLDNLRK 223 (224)
T ss_pred HHHHHHHHHHcccHHHHhccCccc-ccccchhhccCCcccccccccc-CCCc-hhHHHHHHHHHhc
Confidence 999999999999999999988874 222222110 000111111111 1233 3899999999984
No 2
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-53 Score=353.38 Aligned_cols=224 Identities=53% Similarity=0.804 Sum_probs=201.9
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKA 84 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a 84 (229)
++.|+ +|||||++|+|++.||++.|.|||+++.|++++++++..||++||+||.++||+|||++++.|+++.|||..+|
T Consensus 4 ~~~~~-~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA 82 (227)
T KOG3229|consen 4 FGKTP-GPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA 82 (227)
T ss_pred cccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34443 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHH
Q 027050 85 QMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIE 164 (229)
Q Consensus 85 ~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d 164 (229)
||+||+++|..+.++..+.|+|++|+++|+.||+++.+|+|..||++|++|++++|+|+||++|+|+++.|.++++++.|
T Consensus 83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d 162 (227)
T KOG3229|consen 83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD 162 (227)
T ss_pred HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHhcchhhhhCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050 165 EEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229 (229)
Q Consensus 165 ~~v~qvldEig~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~ 229 (229)
++|++||.+|+.+..+.+|.+|.....++|...........++++++++++++.+|+.||++|||
T Consensus 163 eEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs 227 (227)
T KOG3229|consen 163 EEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS 227 (227)
T ss_pred HHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998888644444432111111223455566667889999999999997
No 3
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-46 Score=300.23 Aligned_cols=208 Identities=27% Similarity=0.419 Sum_probs=192.2
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKA 84 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a 84 (229)
+++|+ +|||+|..|++.|.||++.|.|+|+.++++++|++|+.+||+.|+.|+.++||+|||+||..|||+++-+.+.+
T Consensus 1 ~niF~-Kktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ 79 (208)
T KOG3231|consen 1 ANIFK-KKTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSS 79 (208)
T ss_pred CCccc-CCCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 36887 77999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHH
Q 027050 85 QMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIE 164 (229)
Q Consensus 85 ~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d 164 (229)
++.+++.|-..+.++.++.++|+.+++.|+.||+.|+++++..+|++|++..++|++.+|||+|++|+.+|..+++||.+
T Consensus 80 ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~ 159 (208)
T KOG3231|consen 80 KITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQ 159 (208)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhhCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050 165 EEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229 (229)
Q Consensus 165 ~~v~qvldEig~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~ 229 (229)
++|+||||||||++++++.++|... ..|+.+ . .....+|+...|++|||
T Consensus 160 aiVNqVLDEIGIEisgKma~~P~a~--s~~~~s--t------------~kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 160 AIVNQVLDEIGIEISGKMAKAPSAR--SLPSAS--T------------SKATISDIERQLAALRS 208 (208)
T ss_pred HHHHHHHHHhhhhhcchhccCCccC--CCCccc--c------------CCCcHHHHHHHHHHhcC
Confidence 9999999999999999999999641 111110 0 11345789999999996
No 4
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-38 Score=254.48 Aligned_cols=198 Identities=16% Similarity=0.291 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 16 QLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGE 95 (229)
Q Consensus 16 e~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~t 95 (229)
..+....+.|+++.++|+|+..+|+++||..+.++|+|+++||.+.+||||.++||.|++.-+|+++.+++++|..++||
T Consensus 5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT 84 (203)
T KOG3232|consen 5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT 84 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHHHHhc
Q 027050 96 SVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIA 175 (229)
Q Consensus 96 a~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvldEig 175 (229)
|.+|..++++|.++++.|....+.||+++|+.+|+.|++||+.+++..++|+++|++.+.-..|.+++|.++++|.||.|
T Consensus 85 avtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaG 164 (203)
T KOG3232|consen 85 AVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAG 164 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999888778899999999999999999
Q ss_pred chhhhhCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050 176 GETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229 (229)
Q Consensus 176 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~ 229 (229)
++++..||.-..+ +.|+ .+.+..+++ |+|.+||++||+
T Consensus 165 lElnq~lp~~~~~---a~~~------------~t~~~~~e~-d~L~qRLaaLR~ 202 (203)
T KOG3232|consen 165 LELNQELPQNVVP---AISV------------KTSAVVDEE-DDLTQRLAALRA 202 (203)
T ss_pred hhhhhcCCCCCCC---CcCC------------CCccccchh-hHHHHHHHHHhc
Confidence 9999999974311 0111 111112334 899999999995
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.92 E-value=1.6e-24 Score=177.29 Aligned_cols=167 Identities=25% Similarity=0.397 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 20 DWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAI 99 (229)
Q Consensus 20 ~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~ 99 (229)
++.+.|+.+++.|++.+.+|+...+++..++++++++|+...|++|++...+.+++..+++....+|++|..+++++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHHHHhcchh-
Q 027050 100 ARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIAGET- 178 (229)
Q Consensus 100 ~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvldEig~~~- 178 (229)
..+..+|..++++|+.+|+.+++++|..+|++|..+++.+++++++|++.++.. ++.++++.+++++++++|++.+.
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~ 158 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE 158 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999988654 23345678889999999999988
Q ss_pred -hhhCchhhhh
Q 027050 179 -AAQLPEAVRK 188 (229)
Q Consensus 179 -~~~l~~~p~~ 188 (229)
...||++|.+
T Consensus 159 ~~~~lp~~P~~ 169 (171)
T PF03357_consen 159 EKQQLPSVPST 169 (171)
T ss_dssp -SS-SS---HH
T ss_pred ccccCCcCCCC
Confidence 8899999875
No 6
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.4e-21 Score=158.75 Aligned_cols=176 Identities=19% Similarity=0.325 Sum_probs=142.7
Q ss_pred ChhhhhhhCC-----CCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 027050 1 MEKVMNMIKP-----KPNPQQLL---RDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRS 72 (229)
Q Consensus 1 M~~~~~~f~~-----~~~~ke~l---r~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~ 72 (229)
|++|.+|||+ +++|+|.+ |+....|- .+.+..++++..++...|++.-.. .|..|.+++++
T Consensus 1 ms~~~~~FG~~k~~~~~t~~eaI~kLrEteemL~----------KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkr 69 (221)
T KOG1656|consen 1 MSMFSRLFGGMKQEAKPTPQEAIQKLRETEEMLE----------KKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKR 69 (221)
T ss_pred CcHHHHHhCcccccCCCChHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHH
Confidence 7888899986 36787664 44444443 477888999999999877776555 46667776666
Q ss_pred HHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhh
Q 027050 73 RKTVN-RLYENKAQMNSISMH---LGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVND 148 (229)
Q Consensus 73 rk~~~-~l~~~~a~l~sv~~q---l~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d 148 (229)
+|.+. .|.+....+..+..| |++|+++..+..+|+.++++|+.+++.||+++|..+|+++..|.+.+..|+++|+.
T Consensus 70 KK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~ 149 (221)
T KOG1656|consen 70 KKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISA 149 (221)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66664 477888889999988 78999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh--hccCccchHHHHHHHHHHHHHHhcchhhh---hCchhhh
Q 027050 149 AVD--TALDSEDIEEEIEEEVDKVLTAIAGETAA---QLPEAVR 187 (229)
Q Consensus 149 ~~d--~~~d~~~~eee~d~~v~qvldEig~~~~~---~l~~~p~ 187 (229)
++. ..+|++++..|.|++-+..||.-.+++.. .||++|+
T Consensus 150 Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs 193 (221)
T KOG1656|consen 150 PVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS 193 (221)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence 984 44888888889999998888887666543 3455553
No 7
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.82 E-value=1.1e-18 Score=148.54 Aligned_cols=183 Identities=14% Similarity=0.205 Sum_probs=146.0
Q ss_pred hhhhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH----H
Q 027050 5 MNMIKPKP-NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNR----L 79 (229)
Q Consensus 5 ~~~f~~~~-~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~----l 79 (229)
.+|||+++ .|+-.+.+....|+.....|++.+.+|+.+..+.+..+++....+. ...|.-|..++|.||...+ +
T Consensus 2 ~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~l 80 (211)
T PTZ00464 2 NRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDMM 80 (211)
T ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46898653 5666788888999999999999999999888888877766432222 3368899999999997755 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhh--hccCcc
Q 027050 80 YENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD--TALDSE 157 (229)
Q Consensus 80 ~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d--~~~d~~ 157 (229)
+....+|..+...|+++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+.|+++++..++ +.+|++
T Consensus 81 ~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEd 160 (211)
T PTZ00464 81 MQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDED 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 556666777778899999999999999999999999999999999999999999999999999999998763 446666
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhCchhhhh
Q 027050 158 DIEEEIEEEVDKVLTAIAGETAAQLPEAVRK 188 (229)
Q Consensus 158 ~~eee~d~~v~qvldEig~~~~~~l~~~p~~ 188 (229)
++++|.+++..++..|.........|++|..
T Consensus 161 ELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~ 191 (211)
T PTZ00464 161 EMLGELDALDFDMEKEADASYLADALAVPGT 191 (211)
T ss_pred HHHHHHHHHHHHHhccccchhhhccccCCCC
Confidence 6666666666665555544445667777764
No 8
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.72 E-value=1.5e-15 Score=127.27 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---H
Q 027050 18 LRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNR-LYENKAQMNSISMH---L 93 (229)
Q Consensus 18 lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~-l~~~~a~l~sv~~q---l 93 (229)
+.+....|+.+...|+.-...|+..-.+.....|++.++|+ |.-|..+++.||...+ +.++.+++..|+.+ +
T Consensus 25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~k----k~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~i 100 (191)
T PTZ00446 25 IYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQ----MSNAKILLKRKKLYEQEIENILNNRLTLEDNMINL 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445554444444444444444444444566666676 3458899999998866 55777777776655 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHHHH
Q 027050 94 GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTA 173 (229)
Q Consensus 94 ~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvldE 173 (229)
+++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+.|+++++..+.+..|++++++|.+++..+-|++
T Consensus 101 E~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~~ 180 (191)
T PTZ00446 101 ENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTMEE 180 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999876434467677777777777666665
Q ss_pred h
Q 027050 174 I 174 (229)
Q Consensus 174 i 174 (229)
-
T Consensus 181 ~ 181 (191)
T PTZ00446 181 K 181 (191)
T ss_pred H
Confidence 3
No 9
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.55 E-value=5.1e-13 Score=112.79 Aligned_cols=186 Identities=23% Similarity=0.308 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 32 IERQIRDIQREEKNVQKAIKDAAKRN--DLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS 109 (229)
Q Consensus 32 LdRe~~~le~~ekkl~~~Ik~aakkg--~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s 109 (229)
++|++.++-.+.+........+.++. +....+++++.+++.+++..||...+++|.++.+.+.....|..+++-|.++
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a 84 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKA 84 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 44444444444444443333332221 5667889999999999999999988888888888887777777776666666
Q ss_pred HHHHHHHHhhCC-hHHHHHHHHHHHHHHhhhchHH---HHHhhHhhhccC--ccchHHHHHHHHHHHHHHhcchhh---h
Q 027050 110 AEVMKLVNNLMK-APEVAATMQEFSKEMTKAGVIE---EFVNDAVDTALD--SEDIEEEIEEEVDKVLTAIAGETA---A 180 (229)
Q Consensus 110 ~~~M~~~n~~m~-~~~l~~~M~ef~~e~~~~~~~~---e~m~d~~d~~~d--~~~~eee~d~~v~qvldEig~~~~---~ 180 (229)
+..|| ++.|.++|+.|..++..++... |.|.+.++...+ ..++.+++|++++.|++|+|+++. .
T Consensus 85 -------~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~ 157 (204)
T COG5491 85 -------AMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ 157 (204)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence 44445 6788899999999998888877 677666666654 345778999999999999999888 5
Q ss_pred hCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050 181 QLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229 (229)
Q Consensus 181 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~ 229 (229)
.+|.+... ....|+ ...|++..+.. +. +....+.|++||..|++
T Consensus 158 ~~~~~~~~-~~~~~a--~~~~ea~~ile-ea-~~~aE~~l~e~~~~L~~ 201 (204)
T COG5491 158 SLPANVVE-NGSVPA--AVSPEARKILE-EA-EKIAEDRLQERLRELPA 201 (204)
T ss_pred cchhhhhc-cccccc--ccChhhhhhHH-HH-HhhHHHHHHHHHHhccc
Confidence 55542221 001111 11111111111 11 12224899999999874
No 10
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=99.31 E-value=9.1e-10 Score=91.24 Aligned_cols=172 Identities=14% Similarity=0.233 Sum_probs=128.1
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLY-ENK 83 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~-~~~ 83 (229)
.++|++++---+ .-...-.|+.+-+.|-+..+++++.....+..-+++++.|..+. |+-+++.+++...|+ ++.
T Consensus 2 G~lfsK~~~Itd-~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdr----AlllLKkKryQE~Ll~qt~ 76 (209)
T KOG2910|consen 2 GNLFSKKSRITD-QDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDR----ALLLLKKKRYQEELLTQTD 76 (209)
T ss_pred CccccCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH----HHHHHHHHHHHHHHHHHHH
Confidence 467886332222 23345566666677777777888877778888889999998654 455678888888866 888
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchH
Q 027050 84 AQMNSISMHLGES---VAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIE 160 (229)
Q Consensus 84 a~l~sv~~ql~ta---~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~e 160 (229)
.+|..|+..+.+. .-..+++.+++..+.+++.+|+.|+++.|+++|++-....+-.+.+++|+++.|.. .|+
T Consensus 77 ~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dE---- 151 (209)
T KOG2910|consen 77 NQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDE---- 151 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccH----
Confidence 8899888876655 44558999999999999999999999999999999999999999999999998873 233
Q ss_pred HHHHHHHHHHHHHhcchhhhhCchhhhh
Q 027050 161 EEIEEEVDKVLTAIAGETAAQLPEAVRK 188 (229)
Q Consensus 161 ee~d~~v~qvldEig~~~~~~l~~~p~~ 188 (229)
++..++++.+..|.-.+ .++|.+|+.
T Consensus 152 ddi~~EldaLese~~~e--~e~PevPs~ 177 (209)
T KOG2910|consen 152 DDILAELDALESELEVE--AELPEVPST 177 (209)
T ss_pred HHHHHHHHHHHHHhhhh--hhcCCCCCC
Confidence 34444444444444332 567888765
No 11
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.6e-08 Score=82.20 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=126.8
Q ss_pred hhhhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHH---
Q 027050 5 MNMIKPKP--NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND-LSSAKSLAQELVRSRKTVNR--- 78 (229)
Q Consensus 5 ~~~f~~~~--~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~-~~~akilAk~lvr~rk~~~~--- 78 (229)
.++||+++ .|--.|.++...+.+..-.|+.-|.+|+.+=-+++.+|++. .-|. ..+.|--|-.+++.||.+++
T Consensus 2 nRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d 80 (218)
T KOG1655|consen 2 NRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKD 80 (218)
T ss_pred cccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 57898643 44556999999999999999999999999999999999885 4454 44566667777777766644
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCcc
Q 027050 79 -LYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSE 157 (229)
Q Consensus 79 -l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~ 157 (229)
|+.-.-.|+.+.+-.++...+..++.+|+.+++.|+..-+.+++.+|...=+++.-=++..+.++|.++...+.-.
T Consensus 81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe--- 157 (218)
T KOG1655|consen 81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD--- 157 (218)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---
Confidence 3333333666666677777888899999999999999999999999999988998889999999999988765431
Q ss_pred chHHHHHHHHHHHHHHh
Q 027050 158 DIEEEIEEEVDKVLTAI 174 (229)
Q Consensus 158 ~~eee~d~~v~qvldEi 174 (229)
.+|++.+++++-..+|.
T Consensus 158 ide~dL~aELdaL~~E~ 174 (218)
T KOG1655|consen 158 IDEADLDAELDALGQEL 174 (218)
T ss_pred cCHHHHHHHHHHHHhHh
Confidence 23334455555554443
No 12
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.3e-07 Score=76.50 Aligned_cols=159 Identities=18% Similarity=0.271 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 027050 21 WQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE--LVRSRKTVNRLYENKAQ---MNSISMHLGE 95 (229)
Q Consensus 21 ~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~--lvr~rk~~~~l~~~~a~---l~sv~~ql~t 95 (229)
....||.+.|.|++-++.|+|+..+++.+-|+. +...|-.||+ .--.|-..+.|.+++-+ +.....||+.
T Consensus 10 p~e~Lr~nqRal~~a~ReleRer~~le~qeKkl-----vaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqa 84 (224)
T KOG3230|consen 10 PAELLRENQRALNKATRELERERQKLELQEKKL-----VAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQA 84 (224)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999887 4556777776 44555566777777766 4556677877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH-----HHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHH
Q 027050 96 SVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM-----QEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKV 170 (229)
Q Consensus 96 a~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M-----~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qv 170 (229)
...-.+...+-...+.+|+.+.+. +..+++.| +.+.+||++-..+-+|-.+.|++++|+.-.+++.+++.+.+
T Consensus 85 VSl~iQtlkss~sma~aMkGaTka--m~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~l 162 (224)
T KOG3230|consen 85 VSLRIQTLKSSTSMAQAMKGATKA--MAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDL 162 (224)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH--HHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 765555555555555559999888 44666665 89999999999999999999999999876688899999999
Q ss_pred HHHhcchhhhhCchhh
Q 027050 171 LTAIAGETAAQLPEAV 186 (229)
Q Consensus 171 ldEig~~~~~~l~~~p 186 (229)
++.+..+++-.|.+--
T Consensus 163 vnqVLDEiGvdl~~qL 178 (224)
T KOG3230|consen 163 VNQVLDEIGVDLASQL 178 (224)
T ss_pred HHHHHHHHcccHHHHh
Confidence 9999888887776643
No 13
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.9e-07 Score=86.10 Aligned_cols=134 Identities=12% Similarity=0.133 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 19 RDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVA 98 (229)
Q Consensus 19 r~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~ 98 (229)
--..-.|.++.-.|.|++..|+.+=++...+.+.+.|.|...-|..|++..-+.=|-..+.....-+|.+|-.++.++.+
T Consensus 232 D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~ 311 (439)
T KOG2911|consen 232 DGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQT 311 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33567888999999999999999999999999999999998877777777777777778888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhh
Q 027050 99 IARTVGHLNKSAEVMKLVNN-LMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDT 152 (229)
Q Consensus 99 ~~~~~~am~~s~~~M~~~n~-~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~ 152 (229)
+.-+..+++.++.+|+.++. ...++++..+|+++..-++....+++.|....-.
T Consensus 312 nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~ 366 (439)
T KOG2911|consen 312 NKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVN 366 (439)
T ss_pred cHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCC
Confidence 99999999999999999999 5578889999999999999999999888876644
No 14
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0089 Score=50.69 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSIS 90 (229)
Q Consensus 11 ~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~ 90 (229)
+.+|.--+++..|.+++-+|.=-|++.+.=+.=+..+.+.++++|+--..+=+.-++-| -|.+-+..+.-.+|-.=.
T Consensus 5 ~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iL---AKEiv~srk~v~Rly~sK 81 (227)
T KOG3229|consen 5 GKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRIL---AKEIVQSRKAVKRLYESK 81 (227)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH---HHHHHHHHHHHHHHHHhH
Confidence 45677779999999999998877777777777777777777776653333222222222 233333344444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH--H---HHHHHHhhhchHHHHHhhHhhhccCccchHHHHHH
Q 027050 91 MHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM--Q---EFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEE 165 (229)
Q Consensus 91 ~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M--~---ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~ 165 (229)
.||.+......=.=+|-.++..|......|. .++..| + .--++|.+==+...+|++++|+.++..++.++.++
T Consensus 82 AqlnSv~M~l~eqla~~r~~G~lqkStevMk--~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeE 159 (227)
T KOG3229|consen 82 AQLNSVSMQLKEQLATLRVAGSLQKSTEVMK--AVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEE 159 (227)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhHHhHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 6666554333333344444444555444432 233332 2 23344444456677888999999999888888999
Q ss_pred HHHHHHHHhcchh-hhhCchhhhh
Q 027050 166 EVDKVLTAIAGET-AAQLPEAVRK 188 (229)
Q Consensus 166 ~v~qvldEig~~~-~~~l~~~p~~ 188 (229)
.++.-+|.|.-.+ +..++.+|..
T Consensus 160 e~deEVdkIL~~it~~~~~~~p~a 183 (227)
T KOG3229|consen 160 EADEEVDKILTEITGEKAGEAPLA 183 (227)
T ss_pred HHHHHHHHHHHHHhccccccCCcc
Confidence 9999999998754 5677888865
No 15
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.004 Score=51.11 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 24 KLRQECRNIERQIRDIQREEKNVQKAIKDA---AKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIA 100 (229)
Q Consensus 24 ~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a---akkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~ 100 (229)
.+|.+-|+|-.--+.+++...+++.+-|+. +|+.-...-.-. +--.-||.-.|-.-+++--+++.++++..+.+
T Consensus 12 ~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndA---cr~LAKQLV~lRkQKtrt~a~s~ki~s~~~Qn 88 (208)
T KOG3231|consen 12 VIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDA---CRVLAKQLVHLRKQKTRTFAVSSKITSMSTQN 88 (208)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH---HHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHH
Confidence 334444455555555666666666655544 222111111111 22223555556666777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHH-----HHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHHHHhc
Q 027050 101 RTVGHLNKSAEVMKLVNNLMKAPEVAATM-----QEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVLTAIA 175 (229)
Q Consensus 101 ~~~~am~~s~~~M~~~n~~m~~~~l~~~M-----~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvldEig 175 (229)
++++++.+.+.+|+.--+-| ..+.+.| -+--++|....+.-||-++++++.+|+--+....+++-+.|++.+.
T Consensus 89 K~M~s~~km~~AMgTTaKTM--~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVL 166 (208)
T KOG3231|consen 89 KVMNSQMKMAGAMGTTAKTM--QAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVL 166 (208)
T ss_pred HHHHHHHHHHHHhchHHHHH--HHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHH
Confidence 88888888888787665543 2343333 2334678888888888888888877764444445667777888777
Q ss_pred chhhhhCch
Q 027050 176 GETAAQLPE 184 (229)
Q Consensus 176 ~~~~~~l~~ 184 (229)
.+++-.+.+
T Consensus 167 DEIGIEisg 175 (208)
T KOG3231|consen 167 DEIGIEISG 175 (208)
T ss_pred HHhhhhhcc
Confidence 776666554
No 16
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.51 E-value=0.00051 Score=55.73 Aligned_cols=147 Identities=16% Similarity=0.232 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 28 ECRNIERQIRDIQREEKNVQKAIKDA---AKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVG 104 (229)
Q Consensus 28 ~~R~LdRe~~~le~~ekkl~~~Ik~a---akkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~ 104 (229)
+++.|...+..|++..+++..+|++. +++--...-+..|+.+++.++...+ ...++.....+|++.........
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k---~~~~~~~~~~~l~~~~~~ie~a~ 78 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEK---QLEKLLNQLSNLESVLLQIETAQ 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999998875 3333334456777777777766544 34455566667777777777777
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHH--HHHHHHhhhchHHHHHhh--HhhhccCccch--HHHHHHHHHHHHHHhcchh
Q 027050 105 HLNKSAEVMKLVNNLMKAPEVAATMQ--EFSKEMTKAGVIEEFVND--AVDTALDSEDI--EEEIEEEVDKVLTAIAGET 178 (229)
Q Consensus 105 am~~s~~~M~~~n~~m~~~~l~~~M~--ef~~e~~~~~~~~e~m~d--~~d~~~d~~~~--eee~d~~v~qvldEig~~~ 178 (229)
....+..+|+..++. +.++.+.|. ++..-+ +-+.+.+++ -+.+.+.+... .+..+++++..|+++..+.
T Consensus 79 ~~~~v~~al~~~~~~--Lk~~~~~i~~~~v~~~~---d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~ 153 (171)
T PF03357_consen 79 SNQQVVKALKQSSKA--LKKINKQINLDKVEKLM---DDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEI 153 (171)
T ss_dssp HHHHHSSS----SHH--HHHHHHSTTSCCHHHHH---HHHHHHHHHHTS----------------TTSTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 777777778777776 334444332 111111 111222111 12223332221 4566777888888876665
Q ss_pred hhhC
Q 027050 179 AAQL 182 (229)
Q Consensus 179 ~~~l 182 (229)
....
T Consensus 154 ~~~~ 157 (171)
T PF03357_consen 154 EEEE 157 (171)
T ss_dssp CTTS
T ss_pred hhhh
Confidence 5543
No 17
>PRK10698 phage shock protein PspA; Provisional
Probab=97.38 E-value=0.067 Score=46.13 Aligned_cols=129 Identities=15% Similarity=0.216 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-------HHHH
Q 027050 10 PKPNPQQLLRDWQRKLRQE--------------CRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKS-------LAQE 68 (229)
Q Consensus 10 ~~~~~ke~lr~~~~~Lr~~--------------~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~aki-------lAk~ 68 (229)
+--||...++...+.++.. .+.++|++..++..-.+...+-..|..+|+-+-||- |+..
T Consensus 21 kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~ 100 (222)
T PRK10698 21 KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDL 100 (222)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3458886766666665543 456777777777777777788888899999888887 7777
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhh
Q 027050 69 LVRSRKTVNRLY----ENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTK 138 (229)
Q Consensus 69 lvr~rk~~~~l~----~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~ 138 (229)
+...+.+..... .++.++..+..+|+.+.+-..+..+=..++.+...+|..+.--.....|..|.+=-++
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~k 174 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERR 174 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 777776665433 4566667777777777777777777677777777777776655556666665554333
No 18
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.32 E-value=0.088 Score=45.17 Aligned_cols=147 Identities=10% Similarity=0.115 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 25 LRQECRNIERQIRDIQREEKNVQKAIKDA---AKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIAR 101 (229)
Q Consensus 25 Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a---akkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~ 101 (229)
++.++..|+.....|++..+++..++..+ ++++...+-...-+.+++.=+.+..|.....++.+....|+.+..+..
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666554333 222221111112333444444555555555566666666666666665
Q ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHH------hhHhhhccC--ccchHHHHHHHHHHHHHH
Q 027050 102 TVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFV------NDAVDTALD--SEDIEEEIEEEVDKVLTA 173 (229)
Q Consensus 102 ~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m------~d~~d~~~d--~~~~eee~d~~v~qvldE 173 (229)
....-..+..+|+..++. +..+.+-| .+.+-=..++-+.|+| +++|...++ ++.+|+|.+++++....|
T Consensus 96 ~a~~~~~vv~amk~g~ka--LK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e 172 (211)
T PTZ00464 96 SVKDTKVQVDAMKQAAKT--LKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFD 172 (211)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 555556666667777766 33444443 2332223333333333 334444442 233555666666666666
Q ss_pred h
Q 027050 174 I 174 (229)
Q Consensus 174 i 174 (229)
+
T Consensus 173 ~ 173 (211)
T PTZ00464 173 M 173 (211)
T ss_pred H
Confidence 4
No 19
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=97.24 E-value=0.019 Score=48.97 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 39 IQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVN--RLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLV 116 (229)
Q Consensus 39 le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~--~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~ 116 (229)
+++.-++....+|...++|.....++-.+.-.+.|.... ++...+++|+.+.++|++..++.....+|..+ -+.+
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v---~~~~ 81 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQV---SGDM 81 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccH
Confidence 778888999999999999988777766666677776666 88899999999999999988777776666665 2233
Q ss_pred HhhCChHHHHHHHHHHHHHHhhhchHHHHHh---hHhhhccCccc--hHHHHHHHHHHHHHHhcchhhhhCch
Q 027050 117 NNLMKAPEVAATMQEFSKEMTKAGVIEEFVN---DAVDTALDSED--IEEEIEEEVDKVLTAIAGETAAQLPE 184 (229)
Q Consensus 117 n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~---d~~d~~~d~~~--~eee~d~~v~qvldEig~~~~~~l~~ 184 (229)
.+..-+-.=-..+..+.+.++.+...-|.+. +++...++... +..+..+.++..+..+.-+++-.|..
T Consensus 82 ~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~ 154 (204)
T COG5491 82 AKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDE 154 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhh
Confidence 3221111101234567778888887777887 56655555544 35566777777777776666655543
No 20
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=97.23 E-value=0.019 Score=48.50 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=95.9
Q ss_pred hhhhCCC-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------HH
Q 027050 5 MNMIKPK-PNP--QQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELV---------RS 72 (229)
Q Consensus 5 ~~~f~~~-~~~--ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lv---------r~ 72 (229)
..|||++ +.| .+.-....-...+++-.|-.++..|++.++.|..+|.+. ...|+.++ +.
T Consensus 2 ~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e---------~~~Ak~~~~~~kk~~Al~~ 72 (191)
T PTZ00446 2 RFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQL---------EIEAKQKVEQNQMSNAKIL 72 (191)
T ss_pred ccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHcccHHHHHHH
Confidence 3489863 344 444444445588888899999999999999999999664 22344333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHH------HH
Q 027050 73 RKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEE------FV 146 (229)
Q Consensus 73 rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e------~m 146 (229)
=+.++.|.....++.+-...|+.+..+......-..+..+|+..|+. +..+.+-| .+.+-=..++-+.| =|
T Consensus 73 LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~a--LK~~~k~~-~idkVd~lmDei~E~~e~~~EI 149 (191)
T PTZ00446 73 LKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANT--HKKLNNEI-NTQKVEKIIDTIQENKDIQEEI 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666677777777777777777777888888887 44555544 12222222333333 34
Q ss_pred hhHhhhccCccchHHHHHHHHHHHHH
Q 027050 147 NDAVDTALDSEDIEEEIEEEVDKVLT 172 (229)
Q Consensus 147 ~d~~d~~~d~~~~eee~d~~v~qvld 172 (229)
++++...+.++.+|+|.+++++..-.
T Consensus 150 seaLs~~~~~~~DEdELe~ELe~Le~ 175 (191)
T PTZ00446 150 NQALSFNLLNNVDDDEIDKELDLLKE 175 (191)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 45565443233466677777765544
No 21
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.50 E-value=0.46 Score=40.69 Aligned_cols=129 Identities=12% Similarity=0.193 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-------
Q 027050 10 PKPNPQQLLRDWQRKLRQEC--------------RNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE------- 68 (229)
Q Consensus 10 ~~~~~ke~lr~~~~~Lr~~~--------------R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~------- 68 (229)
+--||...++...+.++..+ +.++|++..++..-.+...+.+.|.++|+-+-||-.+..
T Consensus 21 k~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~ 100 (219)
T TIGR02977 21 KAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQEL 100 (219)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34588867666666655444 445666666666666777777888889997765544222
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhh
Q 027050 69 LVRSRKTVN----RLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTK 138 (229)
Q Consensus 69 lvr~rk~~~----~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~ 138 (229)
+-+...++. ....++.+|..+..+++.+.+......+=..++.+...+|..+.--.+...+..|++=-++
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 222222222 1224444455555556666555554444444555565666655433445555555554444
No 22
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1.3 Score=37.74 Aligned_cols=133 Identities=14% Similarity=0.208 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 35 QIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE----LVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSA 110 (229)
Q Consensus 35 e~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~----lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~ 110 (229)
-..-|.+.+.-|+.+|-...+. .||.|+.- ++..=|-+++|.+--++|+++.+.|.-+..+..-.+.-.-+-
T Consensus 29 teemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl 104 (221)
T KOG1656|consen 29 TEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVL 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHH
Confidence 4456666666677777654332 25666433 566667778888999999999999999988888887777787
Q ss_pred HHHHHHHhhCChHHHHHHH-----HHHHHHHhhhchHHHHHhhHhhhccCc--cchHHHHHHHHHHHHHH
Q 027050 111 EVMKLVNNLMKAPEVAATM-----QEFSKEMTKAGVIEEFVNDAVDTALDS--EDIEEEIEEEVDKVLTA 173 (229)
Q Consensus 111 ~~M~~~n~~m~~~~l~~~M-----~ef~~e~~~~~~~~e~m~d~~d~~~d~--~~~eee~d~~v~qvldE 173 (229)
.+|+..-+.|+ .+.+.| +++-.+....-.+.+-|++++..-+.- +-+|+|..++++..-.|
T Consensus 105 ~~m~~~A~AmK--~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqe 172 (221)
T KOG1656|consen 105 DAMGSAAKAMK--AAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQE 172 (221)
T ss_pred HHHHHHHHHHH--HHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHH
Confidence 88888888754 555554 333333333344445567778777652 23444555555444433
No 23
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.39 E-value=1.5 Score=37.31 Aligned_cols=139 Identities=16% Similarity=0.231 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 027050 10 PKPNPQQLLRDWQRKLRQECR--------------NIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKT 75 (229)
Q Consensus 10 ~~~~~ke~lr~~~~~Lr~~~R--------------~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~ 75 (229)
+--||...+....+.+...+. .|++++..++..-.+...+...|.++|+-+.||-++........+
T Consensus 20 ~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~ 99 (221)
T PF04012_consen 20 KAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQ 99 (221)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345787776666555555444 445555566666666677777788899988888777766555544
Q ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCChHHHHHHHHHHHHHHhhhch
Q 027050 76 VNRLYE-----------NKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNN---LMKAPEVAATMQEFSKEMTKAGV 141 (229)
Q Consensus 76 ~~~l~~-----------~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~---~m~~~~l~~~M~ef~~e~~~~~~ 141 (229)
+..|.. ++.+|..+..++.....-..+..+-..++++-..+|. .+++......+..++.....+.-
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea 179 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEA 179 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHH
Confidence 444332 2333344444444443333333333333333333333 33444444444555555554444
Q ss_pred HHHHHhh
Q 027050 142 IEEFVND 148 (229)
Q Consensus 142 ~~e~m~d 148 (229)
..+.+.+
T Consensus 180 ~a~a~~e 186 (221)
T PF04012_consen 180 RAEASAE 186 (221)
T ss_pred HHHHHHH
Confidence 4444443
No 24
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=2 Score=36.38 Aligned_cols=96 Identities=13% Similarity=0.198 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 25 LRQECRNIERQIRDIQREEKNVQKAIKDA---AKRNDLSSAKSLAQ-ELVRSRKTVNRLYENKAQMNSISMHLGESVAIA 100 (229)
Q Consensus 25 Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a---akkg~~~~akilAk-~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~ 100 (229)
|+-.+-.++.-...++..=.+|..++.+. +++=....++..-| .++|+=|+++-|...+-+|.+-+..+..++-+.
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 44445555555555555555565555433 33333334444433 366666777777777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 027050 101 RTVGHLNKSAEVMKLVNNLM 120 (229)
Q Consensus 101 ~~~~am~~s~~~M~~~n~~m 120 (229)
+..+-...+..+|+.-|+.|
T Consensus 97 e~LKdtq~Tv~AmK~~~k~m 116 (218)
T KOG1655|consen 97 ESLKDTQATVAAMKDTNKEM 116 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 65555555666777777664
No 25
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.46 E-value=11 Score=32.65 Aligned_cols=130 Identities=13% Similarity=0.165 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027050 11 KPNPQQLLRDWQRKL--------------RQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76 (229)
Q Consensus 11 ~~~~ke~lr~~~~~L--------------r~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~ 76 (229)
--||+..|....+.. --..+.++|++..+...-.+++.+-..|..+|+-+-|+-.+...-..-+..
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~ 101 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA 101 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 458886654443333 334567788888888888888889999999999665554333322211111
Q ss_pred -----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchH
Q 027050 77 -----------NRLYENKAQMNSISMHL---GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVI 142 (229)
Q Consensus 77 -----------~~l~~~~a~l~sv~~ql---~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~ 142 (229)
....+++.++..+..++ .+...+.....+..++...|..+...++. ...|..|.+--++.+..
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kiee~ 178 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIEER 178 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHHHH
Confidence 11223333444444443 33345555556666666667777666665 66677776665554433
Q ss_pred H
Q 027050 143 E 143 (229)
Q Consensus 143 ~ 143 (229)
+
T Consensus 179 e 179 (225)
T COG1842 179 E 179 (225)
T ss_pred H
Confidence 3
No 26
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=16 Score=34.53 Aligned_cols=93 Identities=11% Similarity=0.167 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 027050 23 RKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND---LSSAKSLAQELVRSRKTVNR-LYENKAQMNSISMHLGESVA 98 (229)
Q Consensus 23 ~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~---~~~akilAk~lvr~rk~~~~-l~~~~a~l~sv~~ql~ta~~ 98 (229)
..+.-.+-+|-+-+.+|.++=..|.++|++.-++-. ...-|-.|...+|.|+-.++ +.+.-+.++ +|++..+
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~----~l~~vl~ 304 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLN----NLETVLS 304 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHH
Confidence 344455666666667777777777777766644432 12235566666666665544 334444433 3444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027050 99 IARTVGHLNKSAEVMKLVNNL 119 (229)
Q Consensus 99 ~~~~~~am~~s~~~M~~~n~~ 119 (229)
+...+..-+-+-.+++.-+..
T Consensus 305 ~Id~s~~nkvvl~AyksGs~a 325 (439)
T KOG2911|consen 305 QIDNSQTNKVVLQAYKSGSEA 325 (439)
T ss_pred HHHhhcccHHHHHHHHHhHHH
Confidence 444444444444456666555
No 27
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=89.79 E-value=9.9 Score=31.15 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=29.4
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 4 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 4 ~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
+.+||+++| ....+.+=+..+.......+......+......+.++.++
T Consensus 35 lL~~fl~kp-I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a 83 (174)
T PRK07352 35 LLYYFGRGF-LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQA 83 (174)
T ss_pred HHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677666 4555666666666666666666555555555555555554
No 28
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=86.71 E-value=18 Score=30.60 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HH-HHHHHHH----HHHHHHH---HHHHHHHHHH
Q 027050 32 IERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV-NR-LYENKAQ----MNSISMH---LGESVAIART 102 (229)
Q Consensus 32 LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~-~~-l~~~~a~----l~sv~~q---l~ta~~~~~~ 102 (229)
-||-|-.|..+.-++.+=.|+..+. ...=|-+|++|+|-..-- .. +++-+-. |..+..+ |+.+.+....
T Consensus 14 ~DrAIL~lK~QRdkl~qyqkR~e~~--le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEf 91 (209)
T KOG2910|consen 14 QDRAILSLKTQRDKLKQYQKRLEKQ--LEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEF 91 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444444433222 344588999999864332 22 2222222 3334444 3444555555
Q ss_pred HHHHHHHHHHHHHHHhhCChHHHHHH
Q 027050 103 VGHLNKSAEVMKLVNNLMKAPEVAAT 128 (229)
Q Consensus 103 ~~am~~s~~~M~~~n~~m~~~~l~~~ 128 (229)
+.--+.+...++.-|.. +.+++..
T Consensus 92 t~vqk~V~~gLk~GN~~--lkkl~~~ 115 (209)
T KOG2910|consen 92 TQVQKKVMEGLKQGNEA--LKKLQQE 115 (209)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 55555666666666665 3344443
No 29
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.84 E-value=14 Score=27.46 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027050 71 RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNL 119 (229)
Q Consensus 71 r~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~ 119 (229)
.+++..+||-+...|+.+|..-|+.-.-...+...+..+..++..++..
T Consensus 7 ~kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~ 55 (89)
T COG1937 7 EKKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE 55 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778899999999999999988888888888887776666666544
No 30
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=83.80 E-value=22 Score=29.06 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 027050 23 RKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIA-- 100 (229)
Q Consensus 23 ~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~-- 100 (229)
..|+-.+..|.-..++....-++...+|-...+.|+.+.||+-+.++++-.+...=|.-.....+-+..++.......
T Consensus 2 ~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~ 81 (165)
T PF03398_consen 2 TQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKEC 81 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 456667777777788888888999999999999999999999999999999999999988888888888876654433
Q ss_pred --HHHHHHHHHHHHHHHHHhhCChHHHHHH
Q 027050 101 --RTVGHLNKSAEVMKLVNNLMKAPEVAAT 128 (229)
Q Consensus 101 --~~~~am~~s~~~M~~~n~~m~~~~l~~~ 128 (229)
.+-.++.+. +=.....-++|++..+
T Consensus 82 p~~l~eAi~si---iyAa~r~~elpEL~~v 108 (165)
T PF03398_consen 82 PPELKEAISSI---IYAAPRCGELPELQEV 108 (165)
T ss_dssp SCCHHHHHHHH---HHHHHHHTTTCCHHHH
T ss_pred CHHHHHHHHHH---HHHhhhccCChhHHHH
Confidence 233344443 5555555577776543
No 31
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=82.74 E-value=29 Score=29.46 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=28.4
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 4 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 4 ~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
+.++|+++| ....+.+=+..+.....+.+......+......+.++.++
T Consensus 64 lL~k~l~kP-i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A 112 (205)
T PRK06231 64 LGIFLFWKP-TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566566 4555666666666666666665555555555555555444
No 32
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=82.19 E-value=23 Score=27.92 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=30.5
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 4 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 4 ~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
+.++|+++| ....+.+=...+.....+.+......+......+..+.++
T Consensus 11 il~~~~~~p-i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A 59 (147)
T TIGR01144 11 FCMKYVWPP-LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEA 59 (147)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566566 4566666666777766666666666666666666665554
No 33
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=81.58 E-value=49 Score=31.42 Aligned_cols=133 Identities=15% Similarity=0.229 Sum_probs=70.9
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND-------LSSAKSLAQELVRSRKTVN 77 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~-------~~~akilAk~lvr~rk~~~ 77 (229)
.++|+++| ....+.+=+..+.....+.+.-..+++....+.+..+.++-+... ..+.++...-+-..++...
T Consensus 18 L~kfl~~P-i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~ 96 (445)
T PRK13428 18 VWRFVVPP-VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAE 96 (445)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566 456676667777777777776666666666665555555433321 2223333333444555555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH-HHHHHHHHHHHhhhch
Q 027050 78 RLY-ENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEV-AATMQEFSKEMTKAGV 141 (229)
Q Consensus 78 ~l~-~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l-~~~M~ef~~e~~~~~~ 141 (229)
++. ..+.++..-..+........-..-++..+.++++ +.++-+.. .+++++|=.++..+.-
T Consensus 97 ~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~---~~l~d~~~~~~lId~~i~~l~~~~~ 159 (445)
T PRK13428 97 RIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVR---NHVADPAQQSATVDRFLDELDAMAP 159 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHhhccCC
Confidence 533 5555555554444444444444455555544443 33422233 5777777777766433
No 34
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=79.27 E-value=34 Score=28.21 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=31.7
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.++|+++| ....+.+=+..+.....+.++.....+......+.++..+
T Consensus 41 L~~fl~kP-I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A 88 (184)
T CHL00019 41 LIYFGKGV-LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQA 88 (184)
T ss_pred HHHHhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666 4566766677777777777766666666666666666554
No 35
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=77.51 E-value=34 Score=27.15 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=31.8
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAA 54 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aa 54 (229)
.++|+++| ....+.+=...+.......+......+......+.++..+-
T Consensus 21 l~~~~~~p-i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~ 69 (156)
T PRK05759 21 IMKFVWPP-IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEAR 69 (156)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565566 45666666677777777766666666666666666666553
No 36
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=77.40 E-value=36 Score=27.42 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=31.6
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.++|.++| ....+.+=...+.......+......+......+..+.++
T Consensus 25 L~~fl~kp-i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A 72 (164)
T PRK14473 25 LRTFLYRP-VLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKA 72 (164)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565566 4566766677777777777766666666666666666655
No 37
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=77.06 E-value=39 Score=27.60 Aligned_cols=48 Identities=6% Similarity=0.038 Sum_probs=23.7
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.++|+++| ....+.+=+..+.....+.+......+......+.++..+
T Consensus 33 L~~~~~kp-i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a 80 (173)
T PRK13460 33 LKKFAWDV-ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSA 80 (173)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454455 3444555555555555555555444444444444444443
No 38
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=76.18 E-value=41 Score=27.46 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=28.6
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.++|.++| ....+.+=+..+.......+......+......+.++..+
T Consensus 35 L~~~l~kp-i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a 82 (175)
T PRK14472 35 LKKIAWGP-ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKA 82 (175)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 4555666666666666666666666665555555555544
No 39
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=75.28 E-value=56 Score=28.56 Aligned_cols=134 Identities=10% Similarity=0.125 Sum_probs=67.6
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN-------DLSSAKSLAQELVRSRKTVN 77 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg-------~~~~akilAk~lvr~rk~~~ 77 (229)
.+.|.++| ....+.+=+..+.....+-+.-....+......+.++..+-++. ..++.+...+-+-..|....
T Consensus 22 L~~fl~kP-i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~ 100 (250)
T PRK14474 22 LRRFLYKP-IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVA 100 (250)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565566 44556666666666666666655555555555555554443221 12223333333444555554
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchH
Q 027050 78 RLY-ENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVI 142 (229)
Q Consensus 78 ~l~-~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~ 142 (229)
++. ..+..+..=..+.-......-..-++.-+.++++ +.+|...-.++++.|-.++..++--
T Consensus 101 ~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~---~~~d~~~~~~lid~~i~~l~~l~~~ 163 (250)
T PRK14474 101 TARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALA---DLANATLEQQIVGIFIARLEHLSEA 163 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHhcccCHH
Confidence 433 3333333333222222222333344444544444 4556666678888888888776433
No 40
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.13 E-value=48 Score=27.75 Aligned_cols=116 Identities=13% Similarity=0.147 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhH
Q 027050 70 VRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDA 149 (229)
Q Consensus 70 vr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~ 149 (229)
++.=+...|+-...+++.+-...-.--.+|..++.+|..+ |+.||-..=-.-+.+.=.+|+-=--..+..+.+|.++
T Consensus 66 ~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~a---lktmNLekis~~MDkFE~qFedldvqt~~me~~m~~s 142 (203)
T KOG3232|consen 66 VNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSA---LKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGS 142 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCc
Confidence 3333445566666666666555445556777777777777 6666543322223344445555555556667777665
Q ss_pred hhhccCccchHHHHHHHHHHHHHHhcchhhhhC-chhhhh
Q 027050 150 VDTALDSEDIEEEIEEEVDKVLTAIAGETAAQL-PEAVRK 188 (229)
Q Consensus 150 ~d~~~d~~~~eee~d~~v~qvldEig~~~~~~l-~~~p~~ 188 (229)
..-.+..++.+.-....-+.-=-|+..++.... |.+|.+
T Consensus 143 t~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~~~ 182 (203)
T KOG3232|consen 143 TALSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAISVK 182 (203)
T ss_pred ccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcCCC
Confidence 433344444445555555555555655555554 555544
No 41
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=73.80 E-value=59 Score=28.15 Aligned_cols=131 Identities=8% Similarity=0.163 Sum_probs=66.0
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN-------DLSSAKSLAQELVRSRKTVN 77 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg-------~~~~akilAk~lvr~rk~~~ 77 (229)
.++|+++| ....+.+=+..+.......++.....+......+.++..+-+.. ...+.+....-+-..|....
T Consensus 22 L~kfl~kP-i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~ 100 (246)
T TIGR03321 22 LKRFLYRP-ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEAD 100 (246)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566 44556666666666666666666666655555555555542221 11222223333444445554
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhh
Q 027050 78 RLY-ENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKA 139 (229)
Q Consensus 78 ~l~-~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~ 139 (229)
++. ..+..+..=..+.-......-+.-++..+.++++ +.+|...=...+++|-.++..+
T Consensus 101 ~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~---~~~d~~~~~~lid~~i~~l~~l 160 (246)
T TIGR03321 101 EIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLT---DLADTDLEERMVDVFVQRLRTL 160 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHHHhhcC
Confidence 433 3444433333222222333333444555544443 4556666667778887777666
No 42
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=73.25 E-value=46 Score=26.65 Aligned_cols=48 Identities=6% Similarity=0.153 Sum_probs=30.8
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.++|.++| ....+.+=+..+.....+-+......+......+.++..+
T Consensus 22 L~~f~~kp-i~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a 69 (159)
T PRK13461 22 LKHFFFDK-IKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNA 69 (159)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566566 4566666667777777666666666666666666666554
No 43
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=72.95 E-value=52 Score=27.10 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=33.3
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.++|+++|.....+.+=+..+.....+-++.....+......+.++.++
T Consensus 43 L~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A 91 (184)
T PRK13455 43 LVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREV 91 (184)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556444433677777777888877777777777777666666666554
No 44
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=72.94 E-value=36 Score=25.24 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027050 72 SRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNL 119 (229)
Q Consensus 72 ~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~ 119 (229)
.++...||.+...|+.+|..-++.-.....+...+..+-.++..+...
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~ 55 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMRE 55 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455668899999999999988887777777777777665556555544
No 45
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.45 E-value=64 Score=27.92 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 13 NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAI 50 (229)
Q Consensus 13 ~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~I 50 (229)
+.-+.+.+....|...+|+.+.+..++.+.=.++...-
T Consensus 17 ~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~ 54 (225)
T COG1842 17 ELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQ 54 (225)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999988887766554444433
No 46
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=71.06 E-value=11 Score=24.50 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 13 NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKA 49 (229)
Q Consensus 13 ~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~ 49 (229)
..|+.|.+.-..+-..+-.||.+|..|+.....|..+
T Consensus 5 EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 5 EAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999777666543
No 47
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=70.36 E-value=38 Score=24.53 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027050 72 SRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNL 119 (229)
Q Consensus 72 ~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~ 119 (229)
.++...||.+...|+.+|..=++.=.....+...+..+-.++..++..
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~ 51 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455668899999999999988888778888888888887777777765
No 48
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=69.74 E-value=60 Score=26.53 Aligned_cols=48 Identities=13% Similarity=0.292 Sum_probs=27.9
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.+.|+++| ....+.+=+..+.......+......+......+.++..+
T Consensus 35 L~~~l~~p-i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a 82 (173)
T PRK13453 35 LKKFAWGP-LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKET 82 (173)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454455 4455666666666666666666666665555555555544
No 49
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=67.35 E-value=64 Score=25.94 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=29.4
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.++|.++| ....+.+=...+.....+-++.....+......+..+..+
T Consensus 25 l~~~l~~p-i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A 72 (164)
T PRK14471 25 LAKFAWKP-ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEA 72 (164)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566 4566666666777766666666666666666666666544
No 50
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=64.80 E-value=47 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.432 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 21 WQRKLRQECRNIERQIRDIQREEKNVQKAIK 51 (229)
Q Consensus 21 ~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik 51 (229)
....|...+..+|++...|+.+.+++..+++
T Consensus 21 l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 21 LLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888899999999999999999888864
No 51
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=63.30 E-value=64 Score=24.48 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=19.0
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.+.|.++| ....+.+-...++....+.+......+.........+..+
T Consensus 16 l~~~~~~p-i~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a 63 (132)
T PF00430_consen 16 LNKFLYKP-IKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEA 63 (132)
T ss_dssp HHHHTHHH-HHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 2233333334444444444444444444444444444443
No 52
>PRK11352 regulator protein FrmR; Provisional
Probab=61.30 E-value=64 Score=23.85 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027050 72 SRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNL 119 (229)
Q Consensus 72 ~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~ 119 (229)
.++...||.+...|+.+|..-++.-.....+...+..+..++..+...
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~~ 55 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAE 55 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455668899999999999999988777777777777776666655543
No 53
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=57.10 E-value=1.7e+02 Score=27.29 Aligned_cols=134 Identities=13% Similarity=0.256 Sum_probs=82.4
Q ss_pred hhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH---HHHhCCHH
Q 027050 2 EKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEK------------------NVQKAIKD---AAKRNDLS 60 (229)
Q Consensus 2 ~~~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ek------------------kl~~~Ik~---aakkg~~~ 60 (229)
+++..+|- .+..-..+-+....++..+++||.+|...-+... .|..+|.. -|.+. -.
T Consensus 8 ~~in~lfp-~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~s-E~ 85 (383)
T PF04100_consen 8 DYINELFP-DEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEES-EQ 85 (383)
T ss_pred HHHHHhCC-ChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34566664 3333345677788888888888888887766554 12222221 11111 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHH
Q 027050 61 SAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGES---------VAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQE 131 (229)
Q Consensus 61 ~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta---------~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~e 131 (229)
..+-+.+++-+.-..+++|..+-+.|.-+.+=+... ..-.++...+..+...+...+...++|+|...-..
T Consensus 86 ~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~ 165 (383)
T PF04100_consen 86 MVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKR 165 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHH
Confidence 356667777777778888877777776666543222 12235666666777778888888888988776666
Q ss_pred HHHHHh
Q 027050 132 FSKEMT 137 (229)
Q Consensus 132 f~~e~~ 137 (229)
+..=..
T Consensus 166 i~~l~~ 171 (383)
T PF04100_consen 166 IDQLQN 171 (383)
T ss_pred HHHHHH
Confidence 655433
No 54
>PRK09720 cybC cytochrome b562; Provisional
Probab=54.55 E-value=31 Score=26.16 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHH
Q 027050 45 NVQKAIKD---AAKRNDLSSAKSLAQELVRSRKTVNRL 79 (229)
Q Consensus 45 kl~~~Ik~---aakkg~~~~akilAk~lvr~rk~~~~l 79 (229)
.|..+|.+ .+..|..+.||..|+++..+|++.=+-
T Consensus 61 ~lI~qID~A~~La~~GkL~eAK~~a~~l~~~Rn~yHkk 98 (100)
T PRK09720 61 ILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNSYHKK 98 (100)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35555554 477899999999999999999987543
No 55
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=52.99 E-value=2e+02 Score=27.11 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 21 WQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN-DLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGE 95 (229)
Q Consensus 21 ~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg-~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~t 95 (229)
....|....|+|..++..|..+.+++-.+|++..+.+ +.+..+. +.+.-..++..+..++..+..++..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~------~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIA------EVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888899999999999999998866555 3332222 2233334455555555555555543
No 56
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=50.87 E-value=1.2e+02 Score=23.58 Aligned_cols=48 Identities=13% Similarity=0.292 Sum_probs=28.4
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.++|.++| ....+.+=+..+.....+.+......+......+.++..+
T Consensus 22 l~~~l~~p-i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a 69 (140)
T PRK07353 22 LNALFYKP-VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASA 69 (140)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444466 4566666666666666666666666665555555555554
No 57
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=50.84 E-value=1.3e+02 Score=24.29 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 15 QQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 15 ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
...+.+=+..+.....+-++-....+......+.++..+
T Consensus 36 ~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A 74 (167)
T PRK14475 36 AGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEA 74 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777776666666666666666666554
No 58
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=49.81 E-value=2e+02 Score=26.08 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=6.2
Q ss_pred HHHHHHHHhh
Q 027050 218 EEIRARLAKV 227 (229)
Q Consensus 218 ddl~~RL~aL 227 (229)
++|..||...
T Consensus 323 ~~lk~~l~~~ 332 (333)
T PF05816_consen 323 EELKQRLIRM 332 (333)
T ss_pred HHHHHHHHhc
Confidence 6666776543
No 59
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.27 E-value=1.4e+02 Score=23.94 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=25.0
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 7 MIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 7 ~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
.|.++| ....+.+=+..+.....+-++.....+......+.++.++
T Consensus 41 k~l~~P-i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A 86 (156)
T CHL00118 41 IILYKP-LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKA 86 (156)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355 4455555555666655555555555555555555555544
No 60
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.33 E-value=51 Score=25.54 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Q 027050 18 LRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDL 59 (229)
Q Consensus 18 lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~ 59 (229)
+.+-..-|...+..|+++...++..=+.++.+|+.+...|..
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444455566666666666666666666666777766666543
No 61
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.55 E-value=1.2e+02 Score=22.48 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 21 WQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN-DLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGE 95 (229)
Q Consensus 21 ~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg-~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~t 95 (229)
....|....|.+..++..+..+.+.+-.+|.++.+.| +.+..+. +.+.-...+..+..++..+..++..
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~------e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKA------EVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888899999999999999999998887 3333222 2233334445555556666555544
No 62
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=43.71 E-value=43 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=24.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 027050 50 IKDAAKRNDLSSAKSLAQELVRSRKTVNR 78 (229)
Q Consensus 50 Ik~aakkg~~~~akilAk~lvr~rk~~~~ 78 (229)
+.+.|..|+.+.||..|+.+..+|+.+-+
T Consensus 69 a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 69 ADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 45568889999999999999999998643
No 63
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=43.14 E-value=1.3e+02 Score=22.09 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 027050 23 RKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVN-RLYENKAQMNSISM 91 (229)
Q Consensus 23 ~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~-~l~~~~a~l~sv~~ 91 (229)
..|+.++..++..+.+++...+.++++.|...++ -|+..+ +|+.--+-|.||--
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~---------------eRK~RtHRLi~rGa~lEsi~~ 58 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKK---------------ERKERTHRLIERGAILESIFP 58 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhHHHHHHhh
Confidence 3456666667777777777788888888776551 244443 46666666666653
No 64
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.32 E-value=1.1e+02 Score=20.93 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 027050 23 RKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQ 67 (229)
Q Consensus 23 ~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk 67 (229)
..++.++.+|++++.++..+-..++.+|+.. +++.+...-+|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l--~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL--KNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Confidence 4556667777788888888888888888654 235555555554
No 65
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=41.54 E-value=1.9e+02 Score=23.46 Aligned_cols=47 Identities=13% Similarity=0.352 Sum_probs=30.5
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 6 NMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 6 ~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
+.|.++| ....+.+=...+.......+......+......+..+.++
T Consensus 40 ~~fl~kP-i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A 86 (167)
T PRK08475 40 WYFAAKP-LKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEA 86 (167)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454455 4566666677777777777777777776666666666655
No 66
>PHA03188 UL14 tegument protein; Provisional
Probab=39.23 E-value=2.4e+02 Score=23.90 Aligned_cols=104 Identities=11% Similarity=0.099 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhCC----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 41 REEKNVQKAIKDAAKRND----LSS--AKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK 114 (229)
Q Consensus 41 ~~ekkl~~~Ik~aakkg~----~~~--akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~ 114 (229)
..|.-.+..--.....|- ..- +=.-||++ .....+.+++.++|.+|..++.....-..-.-+.+.. +.
T Consensus 23 ~Re~iyK~RTLdLir~GVd~~dP~FV~AFTsAK~A---~~dl~rqLrs~aRve~veQK~r~Iq~rVeeQ~a~r~i---L~ 96 (199)
T PHA03188 23 HRAGLFKERTLDLIRGGASTQDPAFVHAFTAAKDA---CADLNNNIRSAARIAAVEQKIADIQEKVEEQTSIQKI---LN 96 (199)
T ss_pred HHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344444455555566652 211 22335554 3334455566677777766655443333333333333 54
Q ss_pred HHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhcc
Q 027050 115 LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTAL 154 (229)
Q Consensus 115 ~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~ 154 (229)
.==+.++ |.+.. .|...=+..-..++.++|+++...
T Consensus 97 ~nRRfL~-PdFid---~lD~~ED~l~d~Ed~L~da~~~~~ 132 (199)
T PHA03188 97 ANRRYIA-PDFIE---GLDKIEDDNCDGIDKLEDAVGGDI 132 (199)
T ss_pred HhhhhcC-hHHHH---HHHHHHHHHHhhHHHHHhhhcCCC
Confidence 4444444 33333 333333344444555666664443
No 67
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.93 E-value=3.4e+02 Score=26.27 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 18 LRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAK 55 (229)
Q Consensus 18 lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aak 55 (229)
.++..|.|=-+.|++.+++..+..+-+.++.+.+..-+
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777888888888888777776544
No 68
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.64 E-value=1.4e+02 Score=23.36 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 13 NPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAA 54 (229)
Q Consensus 13 ~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aa 54 (229)
...+.|.+-...|...+..|+|+..+++.+=++++..|.++.
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445556666666666666666666666666666665543
No 69
>PHA02047 phage lambda Rz1-like protein
Probab=37.40 E-value=1.8e+02 Score=21.96 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 027050 16 QLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND 58 (229)
Q Consensus 16 e~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~ 58 (229)
+.+......++.....+.++..+++....+-.++|+.+.+++.
T Consensus 37 ~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 37 KRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455556677788888999999999999999999999999764
No 70
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.26 E-value=3.2e+02 Score=24.79 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 18 LRDWQRKLRQECRNIERQIRDIQREEKNVQKAIK 51 (229)
Q Consensus 18 lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik 51 (229)
++.....++..+....+.|..++++=..++..|+
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777778888877777777775
No 71
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.38 E-value=1.2e+02 Score=22.45 Aligned_cols=39 Identities=8% Similarity=0.337 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHH
Q 027050 26 RQECRNIERQIRDIQREEKNVQKAIKDA-AKRNDLSSAKS 64 (229)
Q Consensus 26 r~~~R~LdRe~~~le~~ekkl~~~Ik~a-akkg~~~~aki 64 (229)
+++...|..+...+..+....++++|.+ .++.|.+..+.
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~ 68 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRR 68 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 3335556666666666666666777755 33344444433
No 72
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=34.81 E-value=1e+02 Score=23.10 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Q 027050 49 AIKDAAKRNDLSSAKSLAQELVRSRKTVNRLY 80 (229)
Q Consensus 49 ~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~ 80 (229)
.+..++..|+.+.||..++.+-.+|+..=+.+
T Consensus 71 ~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 71 KAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 45567889999999999999999998875543
No 73
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.18 E-value=4e+02 Score=25.03 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 19 RDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGE 95 (229)
Q Consensus 19 r~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~t 95 (229)
-+....|....|++..++..|..+.+++-.+|+...+.++-. +. .-+.+.+.-..++..+..++..+..++..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~-~~---~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDK-IE---EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888899999999999998865555310 11 11123334444555555666666555544
No 74
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=34.15 E-value=1.9e+02 Score=25.37 Aligned_cols=49 Identities=10% Similarity=0.214 Sum_probs=40.8
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 5 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 5 ~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
--||..++...|.-|.....|++.+......+..|+...+.|..-|.++
T Consensus 14 QEw~~~p~~A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~ 62 (236)
T PF12269_consen 14 QEWQLSPCVAEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARA 62 (236)
T ss_pred HHhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577766667777888888999999999999999999999998888765
No 75
>PRK15058 cytochrome b562; Provisional
Probab=33.10 E-value=1e+02 Score=24.46 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 027050 51 KDAAKRNDLSSAKSLAQELVRSRKTVNR 78 (229)
Q Consensus 51 k~aakkg~~~~akilAk~lvr~rk~~~~ 78 (229)
...+..|+.+.||..++++..+|+++=+
T Consensus 98 ~~la~~GkL~eAK~~a~~l~~lR~eYHk 125 (128)
T PRK15058 98 LKLANEGKVKEAQAAAEQLKTTRNAYHK 125 (128)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3447889999999999999999998744
No 76
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.81 E-value=3.7e+02 Score=24.25 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 18 LRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKD 52 (229)
Q Consensus 18 lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~ 52 (229)
+.+-...|..+...+..++..++++...+.++|..
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555544
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.78 E-value=7.4e+02 Score=27.66 Aligned_cols=129 Identities=12% Similarity=0.216 Sum_probs=81.0
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCC--HHHHHHHHHHHH---
Q 027050 4 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAK--------RND--LSSAKSLAQELV--- 70 (229)
Q Consensus 4 ~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aak--------kg~--~~~akilAk~lv--- 70 (229)
...|+|-.+=+.+.|..+...+.....++..++..++.+-..++..++..-+ .|. ...|.-.|++++
T Consensus 426 ~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~ 505 (1486)
T PRK04863 426 AKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRL 505 (1486)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHh
Confidence 4567774443446688888888888877777777777776666666554433 243 333444555544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHhh
Q 027050 71 -RSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMK-APEVAATMQEFSKEMTK 138 (229)
Q Consensus 71 -r~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~-~~~l~~~M~ef~~e~~~ 138 (229)
..|....++...+.+|..++.+++.+.....+.....+. .+...+ ...+.....+.+.+.+.
T Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 569 (1486)
T PRK04863 506 REQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKR------LGKNLDDEDELEQLQEELEARLES 569 (1486)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677788888999999999888887777776555442 222332 55555555555444433
No 78
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.18 E-value=71 Score=17.71 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027050 23 RKLRQECRNIERQIRDIQ 40 (229)
Q Consensus 23 ~~Lr~~~R~LdRe~~~le 40 (229)
..+|..+++|+|++..|-
T Consensus 4 ~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 4 NRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356777888888877664
No 79
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.64 E-value=2.2e+02 Score=21.13 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 16 QLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 16 e~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
..+.+....|...+..|+.++..++.+-..++.+|++.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666677777777776666666666654
No 80
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=30.87 E-value=4.3e+02 Score=24.32 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=11.5
Q ss_pred hhhhhhCCCCCHH-HHHHH
Q 027050 3 KVMNMIKPKPNPQ-QLLRD 20 (229)
Q Consensus 3 ~~~~~f~~~~~~k-e~lr~ 20 (229)
.+|.||+++.++. ..+|.
T Consensus 270 ~i~kw~fp~~~~~~~~l~~ 288 (358)
T PF08405_consen 270 LIMKWFFPKKDPEPATLRN 288 (358)
T ss_pred HHHHHcCCCCccHHHHHHH
Confidence 4678888777766 34444
No 81
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=30.46 E-value=4.4e+02 Score=24.40 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHhhhchHHHHHhhH
Q 027050 121 KAPEVAATMQEFSKEMTKAGVIEEFVNDA 149 (229)
Q Consensus 121 ~~~~l~~~M~ef~~e~~~~~~~~e~m~d~ 149 (229)
.+-+|-+.+..+..|.-.|++.-.+++.+
T Consensus 329 Plv~IKqAl~kLk~EI~qMdvrIGVleh~ 357 (359)
T PF10498_consen 329 PLVKIKQALTKLKQEIKQMDVRIGVLEHT 357 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 35578888899999998888877776654
No 82
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.55 E-value=2.6e+02 Score=21.06 Aligned_cols=31 Identities=6% Similarity=0.177 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 23 RKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 23 ~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
+.++.++.++..+..+++.+...|..+|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777778888888888888888764
No 83
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.16 E-value=2.9e+02 Score=21.49 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 027050 16 QLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN 57 (229)
Q Consensus 16 e~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg 57 (229)
+.+....+.+.-+...+..++..++.....+..+|-++...+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666666666554443
No 84
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=27.80 E-value=1.9e+02 Score=22.63 Aligned_cols=38 Identities=13% Similarity=0.305 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 027050 28 ECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSL 65 (229)
Q Consensus 28 ~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akil 65 (229)
..+.++-++..|++.+..|+.+|+...+..+...+-.+
T Consensus 73 ~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~ 110 (120)
T PF04521_consen 73 QLSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVY 110 (120)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34667778889999999999999887665554443333
No 85
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=27.78 E-value=4e+02 Score=25.38 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 71 RSRKTVNRLYENKAQMNSISMHLGES 96 (229)
Q Consensus 71 r~rk~~~~l~~~~a~l~sv~~ql~ta 96 (229)
|.+++..+|..+-++|++....|+.+
T Consensus 435 rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 435 RYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777777776666666544
No 86
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=27.62 E-value=4.5e+02 Score=24.25 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 13 NPQQLLRDWQRKLRQECRNIERQIRDIQR 41 (229)
Q Consensus 13 ~~ke~lr~~~~~Lr~~~R~LdRe~~~le~ 41 (229)
||.+..+ ........|.|||+|++..+
T Consensus 300 d~~~~~~--~y~~~Q~QR~~ER~IR~~Kr 326 (361)
T PF06152_consen 300 DPEENYE--NYEATQKQRYLERQIRKWKR 326 (361)
T ss_pred Chhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence 5544333 34566777888888887764
No 87
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=26.99 E-value=5.4e+02 Score=24.24 Aligned_cols=48 Identities=10% Similarity=0.181 Sum_probs=35.1
Q ss_pred hhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 3 KVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 3 ~~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
++-++||+..+| +++.-+.-++-.-++||-+-+|.+.+..|...++-+
T Consensus 120 f~~Kif~r~~~s---iqe~~~kYQt~~~~id~I~~~l~k~kd~L~~dn~~L 167 (386)
T COG3853 120 FLTKIFGRSKSS---IQEIFSKYQTIGAQIDRIIESLSKGKDELTRDNKML 167 (386)
T ss_pred HHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHH
Confidence 456888864444 666667777788888888888888888887776543
No 88
>PRK07857 hypothetical protein; Provisional
Probab=26.53 E-value=2.6e+02 Score=21.35 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 027050 21 WQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND 58 (229)
Q Consensus 21 ~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~ 58 (229)
....+|.++-+||++|-+|=.+.-.+-.+|-+.-+.++
T Consensus 29 ~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g 66 (106)
T PRK07857 29 EIDELREEIDRLDAEILALVKRRTEVSQAIGKARMASG 66 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34568999999999999999999999999877654443
No 89
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=25.80 E-value=55 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=12.0
Q ss_pred ChhhhhhhCCCCCHHHHHHH
Q 027050 1 MEKVMNMIKPKPNPQQLLRD 20 (229)
Q Consensus 1 M~~~~~~f~~~~~~ke~lr~ 20 (229)
|++|..|||++++..+..++
T Consensus 1 M~l~~~f~~~k~~Sa~~AKe 20 (81)
T TIGR01215 1 MSLLEFFKSRKKNSAEVAKD 20 (81)
T ss_pred CchHHHhhcCCCCcHHHHHH
Confidence 77766666655455555544
No 90
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.50 E-value=6e+02 Score=24.27 Aligned_cols=70 Identities=26% Similarity=0.372 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 027050 21 WQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRS-RKTVNRLYENKAQMNSISMHLGE 95 (229)
Q Consensus 21 ~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~-rk~~~~l~~~~a~l~sv~~ql~t 95 (229)
-...|....|.+-++...|.++.+.+-++|.++.++|.. ++..++.- +.-..++......+..+...+++
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-----~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-----DAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345677777778888888888888888888766666553 33333333 33334455555566655555544
No 91
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=25.21 E-value=57 Score=23.83 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=13.2
Q ss_pred ChhhhhhhCCCCCHHHHHHH
Q 027050 1 MEKVMNMIKPKPNPQQLLRD 20 (229)
Q Consensus 1 M~~~~~~f~~~~~~ke~lr~ 20 (229)
|++|..+||+++...+..++
T Consensus 1 M~l~~~f~~~k~~Sa~vAKe 20 (84)
T PRK13989 1 MSILSFLLGEKKKTASVAKE 20 (84)
T ss_pred CchHHHhhcCCCCcHHHHHH
Confidence 77777777766655665555
No 92
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.10 E-value=3.1e+02 Score=20.83 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 14 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 14 ~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
+...++++...|......|+.++..++.....+...+..+
T Consensus 74 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 74 NRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667777777777777777777777766666543
No 93
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=24.33 E-value=3.6e+02 Score=21.35 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 15 QQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 15 ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
...+.+=...+.....+-++-....+......+.++.++
T Consensus 28 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A 66 (159)
T PRK09173 28 ARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEA 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677766666666666666666666666554
No 94
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=24.18 E-value=40 Score=25.16 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=8.6
Q ss_pred ChhhhhhhCCCC
Q 027050 1 MEKVMNMIKPKP 12 (229)
Q Consensus 1 M~~~~~~f~~~~ 12 (229)
|++|.+|||+++
T Consensus 1 M~~~s~LFGg~~ 12 (91)
T PF10115_consen 1 MSFFSRLFGGGK 12 (91)
T ss_pred CcHHHHhhCCCC
Confidence 777888887543
No 95
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.08 E-value=3.7e+02 Score=22.33 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 17 LLRDWQRKLRQECRNIERQIRDIQREEKNV 46 (229)
Q Consensus 17 ~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl 46 (229)
++......|..++++|+++|..++....+.
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~ 146 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLEEIQSKS 146 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444433
No 96
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=23.26 E-value=1.7e+02 Score=22.85 Aligned_cols=27 Identities=33% Similarity=0.767 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 10 PKPNPQQLLRDWQRKLRQECRNIERQIRDIQ 40 (229)
Q Consensus 10 ~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le 40 (229)
.+.+|+..+++.+..++ .+|+.++++|
T Consensus 78 ~~~~~~~~l~~~~~~~~----~~e~Rl~~mE 104 (121)
T TIGR02978 78 AGQSPRQALREVKREFR----DLERRLRNME 104 (121)
T ss_pred cCCCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34566666655554444 4555555555
No 97
>PHA03190 UL14 tegument protein; Provisional
Probab=22.04 E-value=4.9e+02 Score=22.05 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhh
Q 027050 78 RLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD 151 (229)
Q Consensus 78 ~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d 151 (229)
..+++.++|.+|..++.....-..-.-+++.. +..==+.+++. ....|..+-+++-..++.++++..
T Consensus 59 ~~lrS~aRle~vrQk~~~Iq~rVE~Q~a~r~~---L~~nRRyL~Pd----F~d~ld~~eD~l~d~E~~L~~a~~ 125 (196)
T PHA03190 59 IAAQSDKRLSSVRCHIARIKAATEGQRALALE---LDGYRRYLRND----FLDTFAAEADAIADAEIDLECAEA 125 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhcChH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777776665544444433334433 55544555533 344566666666666666666553
No 98
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.00 E-value=1.6e+02 Score=19.66 Aligned_cols=19 Identities=21% Similarity=0.730 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027050 24 KLRQECRNIERQIRDIQRE 42 (229)
Q Consensus 24 ~Lr~~~R~LdRe~~~le~~ 42 (229)
.++.+.|.+.|++.+++++
T Consensus 45 ~~r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544
No 99
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=21.61 E-value=2.4e+02 Score=22.10 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=25.0
Q ss_pred hhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 3 KVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQRE 42 (229)
Q Consensus 3 ~~~~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ 42 (229)
.|+++|...| ..+.+|...+.|..+...|..+-++....
T Consensus 53 ~m~~LfP~~~-~~e~vr~~L~~L~~~~~~Lq~eC~~~~~~ 91 (123)
T PF12205_consen 53 EMAALFPKDP-RSETVRSSLRQLTSSAYRLQAECQKAQPE 91 (123)
T ss_dssp HHHHTS-SSB---HHHHHHHHHHHHHHHHHHHHHHS---S
T ss_pred HHHHhCCCcc-CChHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 3578897555 45788888888888887777776665544
No 100
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=21.58 E-value=9.6e+02 Score=25.26 Aligned_cols=104 Identities=14% Similarity=0.268 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 20 DWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAK--------RNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISM 91 (229)
Q Consensus 20 ~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aak--------kg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ 91 (229)
...|.|+.-.+..+++.+.|-.+..+...+|-..-- +.|.+++|. ...+...++-.+.+++.-...
T Consensus 365 ~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kn------eL~~a~ekld~mgthl~mad~ 438 (1265)
T KOG0976|consen 365 MDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKN------ELQEALEKLDLMGTHLSMADY 438 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHH------HHHHHHHHHHHHhHHHHHHHH
Confidence 345666666677777777777777777777654311 123344432 223444566677777777777
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 027050 92 HLGESVAIARTV-GHLNKSAEVMKLVNNLMKAPEVAATMQEFSK 134 (229)
Q Consensus 92 ql~ta~~~~~~~-~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~ 134 (229)
|+.+........ +++..+ +..+|.+ +..|+..|..+++
T Consensus 439 Q~s~fk~Lke~aegsrrra---IeQcnem--v~rir~l~~sle~ 477 (1265)
T KOG0976|consen 439 QLSNFKVLKEHAEGSRRRA---IEQCNEM--VDRIRALMDSLEK 477 (1265)
T ss_pred HHhhHHHHHHhhhhhHhhH---HHHHHHH--HHHHHHHhhChhh
Confidence 776665444333 344444 5566665 3355555544433
No 101
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=21.23 E-value=3e+02 Score=19.24 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 027050 23 RKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN 57 (229)
Q Consensus 23 ~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg 57 (229)
..+|..+..||+++-+|=.+--.+-.+|-+.-+.+
T Consensus 3 ~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~~ 37 (74)
T TIGR01808 3 DTLREEIDRLDAEILALVKRRAEISQAIGKARMAS 37 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35888999999999999999999988886654443
No 102
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=20.29 E-value=5e+02 Score=23.78 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027050 16 QLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVR 71 (229)
Q Consensus 16 e~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr 71 (229)
|+=..++..+.+-+++|-|--.+-+++++++...+.+.. ..+.+.||++|-.
T Consensus 31 e~GkrHke~V~Kritdi~rks~~kekeekKls~~la~mE----aaA~~syaedl~~ 82 (336)
T KOG0150|consen 31 ERGKRHKENVAKRITDIHRKSLKKEKEEKKLSKELAAME----AAASASYAEDLSY 82 (336)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHH----HHHHHHHHHhhhh
Confidence 445668899999999999999999999999988887653 2356888888443
No 103
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.23 E-value=5.1e+02 Score=21.53 Aligned_cols=61 Identities=15% Similarity=0.340 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 25 LRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLG 94 (229)
Q Consensus 25 Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ 94 (229)
++.....|..++..+...-..++..|..+ +.|..++ -.......++..++.++..+..++.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREES--------EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666667777765 4444333 2223334555666666666666665
No 104
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=20.19 E-value=4.7e+02 Score=21.12 Aligned_cols=58 Identities=12% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 30 RNIERQIRDIQREEKNVQKAIKDAAKRNDLSS-A-KSLAQELVRSRKTVNRLYENKAQMNSISMHLGES 96 (229)
Q Consensus 30 R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~-a-kilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta 96 (229)
..|..++..|..+...+...|+.|...||... | -..|| .++....++|.-+..+|.+|
T Consensus 14 ~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak---------~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 14 DHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRA---------DELARLDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHH---------HHHHHHHHHHHHHHHHHHhC
Confidence 34455666676666667788999999997432 2 22232 23344555666666666654
Done!