Query 027050
Match_columns 229
No_of_seqs 129 out of 726
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 7.9E-56 2.7E-60 376.5 12.2 214 10-229 4-218 (218)
2 2gd5_A Charged multivesicular 100.0 5.8E-47 2E-51 314.2 5.1 177 7-187 2-178 (179)
3 3eab_G CHMP1B; spastin, MIT, E 98.8 7.5E-10 2.6E-14 72.7 2.0 49 163-229 2-50 (50)
4 3frt_A Charged multivesicular 98.7 1.7E-08 5.9E-13 85.4 6.7 152 20-178 7-168 (218)
5 3um3_B Charged multivesicular 98.1 6.4E-06 2.2E-10 61.8 6.4 70 119-188 2-77 (104)
6 2gd5_A Charged multivesicular 97.8 2.3E-05 7.9E-10 64.1 6.1 146 22-174 9-164 (179)
7 2xze_Q Charged multivesicular 97.0 0.00014 4.7E-09 45.0 0.5 16 214-229 25-40 (40)
8 2v6x_B DOA4-independent degrad 96.9 0.00026 9E-09 46.8 1.1 13 217-229 40-52 (54)
9 4abm_A Charged multivesicular 96.3 0.056 1.9E-06 38.2 10.3 33 63-95 44-77 (79)
10 3ggz_E Vacuolar protein-sortin 86.6 0.35 1.2E-05 27.5 1.8 15 215-229 15-29 (29)
11 3frr_A Uncharacterized protein 85.6 13 0.00045 30.2 19.9 125 7-138 3-136 (191)
12 3twe_A Alpha4H; unknown functi 83.3 0.67 2.3E-05 25.1 1.9 14 215-228 8-21 (27)
13 2luh_B Vacuolar protein-sortin 82.7 0.94 3.2E-05 30.1 2.8 33 120-152 1-33 (59)
14 3ggy_A Increased sodium tolera 75.4 31 0.0011 28.0 15.7 117 18-137 9-141 (193)
15 2hh7_A Hypothetical protein CS 70.3 27 0.00091 26.2 8.2 48 72-119 9-56 (119)
16 3aai_A Copper homeostasis oper 63.0 33 0.0011 24.5 7.2 48 72-119 13-61 (94)
17 4adz_A CSOR; transcription, co 61.3 42 0.0014 25.7 7.9 50 70-119 49-98 (136)
18 2lxm_B Charged multivesicular 59.3 3.9 0.00013 26.9 1.5 35 137-171 2-37 (57)
19 1gp8_A Protein (scaffolding pr 52.7 9.4 0.00032 23.0 2.2 26 45-70 12-37 (40)
20 3iv1_A Tumor susceptibility ge 52.5 51 0.0017 22.8 6.4 39 15-53 27-65 (78)
21 3mq9_A Bone marrow stromal ant 49.4 1.4E+02 0.0048 26.5 13.8 27 6-32 363-389 (471)
22 4dci_A Uncharacterized protein 48.6 93 0.0032 24.1 11.3 33 20-52 29-61 (150)
23 1yzm_A FYVE-finger-containing 44.8 58 0.002 20.7 6.3 39 42-80 10-48 (51)
24 2lw1_A ABC transporter ATP-bin 42.7 79 0.0027 21.9 6.4 31 22-52 17-47 (89)
25 2w6b_A RHO guanine nucleotide 40.4 72 0.0025 20.5 6.4 39 17-55 14-52 (56)
26 3q8t_A Beclin-1; autophagy, AT 36.4 1.1E+02 0.0039 21.6 12.8 80 15-98 6-88 (96)
27 1z0k_B FYVE-finger-containing 35.8 1E+02 0.0034 20.8 6.8 36 45-80 31-66 (69)
28 1t3j_A Mitofusin 1; coiled coi 35.7 1.2E+02 0.0041 21.7 6.8 34 15-48 42-75 (96)
29 2p22_A Suppressor protein STP2 35.6 90 0.0031 24.8 6.3 47 6-52 35-81 (174)
30 3um3_B Charged multivesicular 33.4 96 0.0033 22.5 5.7 49 135-186 14-64 (104)
31 3s4r_A Vimentin; alpha-helix, 32.6 1.3E+02 0.0044 21.2 7.5 50 38-87 27-76 (93)
32 2r6a_C DNAG primase, helicase 30.4 1.2E+02 0.0041 21.8 6.0 51 17-76 90-140 (143)
33 2v66_B Nuclear distribution pr 25.1 2E+02 0.0067 21.1 6.1 42 16-57 24-65 (111)
34 2yy0_A C-MYC-binding protein; 23.7 1.4E+02 0.0049 18.8 5.4 40 1-40 4-46 (53)
35 4g3b_A Alpha4F3D; alpha helix, 23.6 50 0.0017 17.5 1.9 14 215-228 8-21 (26)
36 3vkg_A Dynein heavy chain, cyt 21.5 9.8E+02 0.033 27.6 16.7 24 165-188 1990-2013(3245)
37 2dq0_A Seryl-tRNA synthetase; 21.4 4.5E+02 0.015 23.7 10.6 39 20-58 31-69 (455)
38 2aze_B Transcription factor E2 20.5 1.2E+02 0.0042 21.9 4.2 23 30-52 9-31 (106)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-56 Score=376.50 Aligned_cols=214 Identities=42% Similarity=0.657 Sum_probs=140.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 10 PKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSI 89 (229)
Q Consensus 10 ~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv 89 (229)
+++||+|++|+|++.||++.|+|||++++|+++|++++.+||++||+||+++|||||++|||+|+++.+||+++++|++|
T Consensus 4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV 83 (218)
T 3frt_A 4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV 83 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHH
Q 027050 90 SMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDK 169 (229)
Q Consensus 90 ~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~q 169 (229)
+++|++++++.+++++|++++++|+.||++||+|+|+.||++|++||+++|+++|||+|+|+++++++++++++|++|++
T Consensus 84 ~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~k 163 (218)
T 3frt_A 84 LMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR 163 (218)
T ss_dssp HHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HHHHhcchhhhhCchhhhhhhhhhhhhhhhhhhhhhhhh-ccCCChhhHHHHHHHHHhhhC
Q 027050 170 VLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVA-EGIDDEKELEEIRARLAKVRS 229 (229)
Q Consensus 170 vldEig~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ddl~~RL~aLr~ 229 (229)
||+|||.+- |+.+|.+.....|.+. ++...+.. +++++++++++|++||++|||
T Consensus 164 VldEi~~~~---l~~~p~~~~~~~~~~~---~~~~~~~~~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 164 ILFEITAGA---LGKAPSKVTDALPEPE---PPGAMAASEDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp HHHTC--------------------------------------------------------
T ss_pred HHHHHhHhH---hhcCCCCCCCCCCCcc---ccccccccccchhhHHHHHHHHHHHHHhcC
Confidence 999999654 5555432111122211 00001111 123345678999999999997
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=5.8e-47 Score=314.23 Aligned_cols=177 Identities=45% Similarity=0.726 Sum_probs=141.6
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 7 MIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQM 86 (229)
Q Consensus 7 ~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l 86 (229)
+|+ +|||+|++|+|++.|++++|+|||++.+|+++|++++.+||+++++|+.++||+||+++||.|+++.+|++++++|
T Consensus 2 ~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l 80 (179)
T 2gd5_A 2 AMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHM 80 (179)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHH
Q 027050 87 NSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEE 166 (229)
Q Consensus 87 ~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~ 166 (229)
++|+++|+++.++..++++|+.++++|+.+|++||+|+|+++|++|++|++++|+++|||+|+|++++++++++++++++
T Consensus 81 ~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~ 160 (179)
T 2gd5_A 81 NSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME 160 (179)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHhcchhhhhCchhhh
Q 027050 167 VDKVLTAIAGETAAQLPEAVR 187 (229)
Q Consensus 167 v~qvldEig~~~~~~l~~~p~ 187 (229)
|++||+|+|+ ++||.+|.
T Consensus 161 v~kVl~E~~~---~~l~~~P~ 178 (179)
T 2gd5_A 161 IDRILFEITA---GALGKAPS 178 (179)
T ss_dssp HHHTTCCC-------------
T ss_pred HHHHHHHhhH---hhcccCCC
Confidence 9999999996 46787774
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=98.85 E-value=7.5e-10 Score=72.67 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcchhhhhCchhhhhhhhhhhhhhhhhhhhhhhhhccCCChhhHHHHHHHHHhhhC
Q 027050 163 IEEEVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEEIRARLAKVRS 229 (229)
Q Consensus 163 ~d~~v~qvldEig~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddl~~RL~aLr~ 229 (229)
+|++++||+||+|++++..||.+|.+ +++ . + + . ..+.|+|.+||++||+
T Consensus 2 Vd~Lm~qVaDE~Glel~~~L~~~~~~-~~~--~-----~----~-~-----~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 2 VDMLLQEMADEAGLDLNMELPQGQTG-SVG--T-----S----V-A-----SAEQDELSQRLARLRD 50 (50)
T ss_dssp CCHHHHHHHHHTTCC---------CH-HHH--H-----H----H-H-----HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCchHHhhccccccc-ccC--C-----C----C-C-----cccHHHHHHHHHHHhC
Confidence 57899999999999999999998865 111 0 0 1 1 1234899999999996
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=98.72 E-value=1.7e-08 Score=85.39 Aligned_cols=152 Identities=14% Similarity=0.203 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 027050 20 DWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE--LVRSRKTVNRLY---ENKAQMNSISMHLG 94 (229)
Q Consensus 20 ~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~--lvr~rk~~~~l~---~~~a~l~sv~~ql~ 94 (229)
..+..+|...|.|-+.++.|+|+-.+++.+-|+. ....|..||. .--.|-+...|. +...+|....+||+
T Consensus 7 ~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~-----~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~ 81 (218)
T 3frt_A 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKV-----KRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888899999999999999998887765 2334444443 222344444444 55566888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH--HHHHH---HHhhhchHHHHHhhHhhhccCccchHHHHHHHHHH
Q 027050 95 ESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM--QEFSK---EMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDK 169 (229)
Q Consensus 95 ta~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M--~ef~~---e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~q 169 (229)
+...-.....++.+++.+|+.+.+.| ..+...| ++++. +|++--+.-+++++.|++++|+.+..++.+++++.
T Consensus 82 sV~~rlqt~~s~~~v~~sM~~st~~M--~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~ 159 (218)
T 3frt_A 82 SVLMGMKNQLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEM 159 (218)
T ss_dssp HHHHHHHHHHHCC----CCCCCHHHH--HHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHH
Confidence 99888888888888888899888884 3777666 55554 45555555567888999999876666667789999
Q ss_pred HHHHhcchh
Q 027050 170 VLTAIAGET 178 (229)
Q Consensus 170 vldEig~~~ 178 (229)
+++.+.-++
T Consensus 160 ~v~kVldEi 168 (218)
T 3frt_A 160 EIDRILFEI 168 (218)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 999986665
No 5
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=98.08 E-value=6.4e-06 Score=61.82 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=56.0
Q ss_pred hCChHHHHHHHHHHHHHHhhhchHHHHHhhHhh--hccCccchHHHHHHHHHHHHHHhcchhh----hhCchhhhh
Q 027050 119 LMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD--TALDSEDIEEEIEEEVDKVLTAIAGETA----AQLPEAVRK 188 (229)
Q Consensus 119 ~m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d--~~~d~~~~eee~d~~v~qvldEig~~~~----~~l~~~p~~ 188 (229)
.|++.+|.++|+++..+++..+.|+++++.+++ +.+|+++++.|.+++.+..+++--++++ ..||++|..
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~ 77 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSI 77 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Confidence 589999999999999999999999999999873 4567777777888888877777444333 358888875
No 6
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.84 E-value=2.3e-05 Score=64.09 Aligned_cols=146 Identities=14% Similarity=0.228 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 027050 22 QRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQE--LVRSRKTVNRL---YENKAQMNSISMHLGES 96 (229)
Q Consensus 22 ~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~--lvr~rk~~~~l---~~~~a~l~sv~~ql~ta 96 (229)
+-.|+...|.|.+.++.|+++-.+++.+-|+.. ...|..|+. .-..|-....+ -+...+|.....+|++.
T Consensus 9 ~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~-----~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v 83 (179)
T 2gd5_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVK-----RSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV 83 (179)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999998887752 223333332 11222233333 34566677888889998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH-----HHHHHHHhhhchHHHHHhhHhhhccCccchHHHHHHHHHHHH
Q 027050 97 VAIARTVGHLNKSAEVMKLVNNLMKAPEVAATM-----QEFSKEMTKAGVIEEFVNDAVDTALDSEDIEEEIEEEVDKVL 171 (229)
Q Consensus 97 ~~~~~~~~am~~s~~~M~~~n~~m~~~~l~~~M-----~ef~~e~~~~~~~~e~m~d~~d~~~d~~~~eee~d~~v~qvl 171 (229)
....+...++..++.+|+.+++.| ..+.+.| ..+-.+|++.-..-++++++|++.+++..++++.+++++..+
T Consensus 84 ~~~lqt~~~~~~v~~am~~~~~~M--~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v 161 (179)
T 2gd5_A 84 LMGMKNQLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEI 161 (179)
T ss_dssp HHHHHHHHHHHHHTSSCCCCSHHH--HTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHH
Confidence 888888888888877787777763 3455444 445555555555556668899999887655566777888888
Q ss_pred HHh
Q 027050 172 TAI 174 (229)
Q Consensus 172 dEi 174 (229)
+.+
T Consensus 162 ~kV 164 (179)
T 2gd5_A 162 DRI 164 (179)
T ss_dssp HHT
T ss_pred HHH
Confidence 776
No 7
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=97.01 E-value=0.00014 Score=45.02 Aligned_cols=16 Identities=50% Similarity=0.779 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHhhhC
Q 027050 214 EKELEEIRARLAKVRS 229 (229)
Q Consensus 214 ~~~~ddl~~RL~aLr~ 229 (229)
++++..||.||+||||
T Consensus 25 Eedi~~MqsRLaALRS 40 (40)
T 2xze_Q 25 EEALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4567889999999997
No 8
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.00026 Score=46.78 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhC
Q 027050 217 LEEIRARLAKVRS 229 (229)
Q Consensus 217 ~ddl~~RL~aLr~ 229 (229)
.||||+||++||.
T Consensus 40 ddDLQARLdsLRR 52 (54)
T 2v6x_B 40 DDDLQARLNTLKK 52 (54)
T ss_dssp CHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhcc
Confidence 4899999999994
No 9
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=96.33 E-value=0.056 Score=38.23 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 027050 63 KSLAQELVRSRKTVNR-LYENKAQMNSISMHLGE 95 (229)
Q Consensus 63 kilAk~lvr~rk~~~~-l~~~~a~l~sv~~ql~t 95 (229)
|.-|..+++.+|..+. +.++.+++.+++.++.+
T Consensus 44 K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 44 KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999877 66999999999988765
No 10
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=86.62 E-value=0.35 Score=27.46 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHhhhC
Q 027050 215 KELEEIRARLAKVRS 229 (229)
Q Consensus 215 ~~~ddl~~RL~aLr~ 229 (229)
+..|.|-+||.|||.
T Consensus 15 ekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 15 EKEDKLAQRLRALRG 29 (29)
T ss_pred hhhHHHHHHHHHHcC
Confidence 344899999999994
No 11
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=85.58 E-value=13 Score=30.16 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=89.2
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 7 MIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQM 86 (229)
Q Consensus 7 ~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l 86 (229)
+||++.++ -+.+..|+-.+..|.=..+|-...-++...+|-+..+.|..+.||+-+.++|+--+...=|.-+.-..
T Consensus 3 mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyC 78 (191)
T 3frr_A 3 MLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYC 78 (191)
T ss_dssp -CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57766553 35566666666666666777777888899999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh-CChHHHHHHH----HHHHHHHhh
Q 027050 87 NSISMHLGESVAIA----RTVGHLNKSAEVMKLVNNL-MKAPEVAATM----QEFSKEMTK 138 (229)
Q Consensus 87 ~sv~~ql~ta~~~~----~~~~am~~s~~~M~~~n~~-m~~~~l~~~M----~ef~~e~~~ 138 (229)
+-+..++....... .+..++.+. +=...+. -++|++..+= ..|-++|..
T Consensus 79 elL~~R~~li~~~k~cp~~l~EAvssl---IyAa~R~~~elpEL~~ir~~l~~KyGkeF~~ 136 (191)
T 3frr_A 79 DLLLARFGLIQSMKELDSGLAESVSTL---IWAAPRLQSEVAELKIVADQLCAKYSKEYGK 136 (191)
T ss_dssp HHHHHTHHHHHSCSSCCGGGHHHHHHH---HHHHHHHTTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHH---HHhhhcccccChHHHHHHHHHHHHhCHHHHH
Confidence 88877766554332 333344333 6666665 6888886543 455555543
No 12
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=83.32 E-value=0.67 Score=25.11 Aligned_cols=14 Identities=57% Similarity=0.933 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHhhh
Q 027050 215 KELEEIRARLAKVR 228 (229)
Q Consensus 215 ~~~ddl~~RL~aLr 228 (229)
.+++|||+||..||
T Consensus 8 keledlqerlrklr 21 (27)
T 3twe_A 8 KELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999987
No 13
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=82.70 E-value=0.94 Score=30.05 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHHHhhhchHHHHHhhHhhh
Q 027050 120 MKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDT 152 (229)
Q Consensus 120 m~~~~l~~~M~ef~~e~~~~~~~~e~m~d~~d~ 152 (229)
+|+.+|..++.++.--++..+.++|.++.+.+.
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~ 33 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNS 33 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 467888899999999999999999999988653
No 14
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=75.39 E-value=31 Score=27.97 Aligned_cols=117 Identities=9% Similarity=0.008 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 18 LRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESV 97 (229)
Q Consensus 18 lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql~ta~ 97 (229)
.-+.+..|+-.+..|.=..++-...-++...+|-+..+.|..+.||+-+.++|+--+.+.=|.-+.-..+-+..++....
T Consensus 9 ~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~ 88 (193)
T 3ggy_A 9 TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVIN 88 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777778888888889999999999999999999999999999999888877777777777765443
Q ss_pred HH--------H----HHHHHHHHHHHHHHHHHhhCChHHHHHH----HHHHHHHHh
Q 027050 98 AI--------A----RTVGHLNKSAEVMKLVNNLMKAPEVAAT----MQEFSKEMT 137 (229)
Q Consensus 98 ~~--------~----~~~~am~~s~~~M~~~n~~m~~~~l~~~----M~ef~~e~~ 137 (229)
.+ . .+..++.+. +=......++|++..+ +..|-++|.
T Consensus 89 ~~~~e~~~~~k~cp~~l~EAvssl---IyAa~R~~elpEL~~ir~~l~~KyGkeF~ 141 (193)
T 3ggy_A 89 DISTEEQLVKEHMDDGINEAIRSL---IYAILFVDEVKELSQLKDLMAWKINVEFV 141 (193)
T ss_dssp TCCSHHHHHHHSSSSSHHHHHHHH---HHHGGGCTTCTTHHHHHHHHHHHTCHHHH
T ss_pred hhcccccccccCCCHHHHHHHHHH---HHhcccCCCChHHHHHHHHHHHHhCHHHH
Confidence 31 1 333344443 5566665688888643 344445553
No 15
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=70.26 E-value=27 Score=26.23 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027050 72 SRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNL 119 (229)
Q Consensus 72 ~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~ 119 (229)
.++...||-+...|+.+|..-++.=.....+...+..+..++..++..
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~ 56 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRV 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999888778888888887777777766654
No 16
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=63.02 E-value=33 Score=24.51 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 027050 72 SRKTVNRLYENKAQMNSISMHLGESV-AIARTVGHLNKSAEVMKLVNNL 119 (229)
Q Consensus 72 ~rk~~~~l~~~~a~l~sv~~ql~ta~-~~~~~~~am~~s~~~M~~~n~~ 119 (229)
.++...||-+...|+.+|..-++.=. ....+...+..+..++..++..
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~ 61 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEM 61 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999998888777 7778887777777777766654
No 17
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=61.27 E-value=42 Score=25.75 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027050 70 VRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNL 119 (229)
Q Consensus 70 vr~rk~~~~l~~~~a~l~sv~~ql~ta~~~~~~~~am~~s~~~M~~~n~~ 119 (229)
-.+++...||-+...|+.+|..-|+.=.....+...+..+..++..++..
T Consensus 49 ~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ 98 (136)
T 4adz_A 49 KQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQ 98 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778899999999999988887777777777777776667666654
No 18
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=59.34 E-value=3.9 Score=26.88 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=10.5
Q ss_pred hhhchHHHHHhhHhhh-ccCccchHHHHHHHHHHHH
Q 027050 137 TKAGVIEEFVNDAVDT-ALDSEDIEEEIEEEVDKVL 171 (229)
Q Consensus 137 ~~~~~~~e~m~d~~d~-~~d~~~~eee~d~~v~qvl 171 (229)
+..+.|++.++.+++. .+|+++++.|.+++-+..+
T Consensus 2 e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~ 37 (57)
T 2lxm_B 2 EDANEINEALSRSYGTPELDEDDLEAELDALGDELL 37 (57)
T ss_dssp --------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3456677888776542 2555555555555554443
No 19
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=52.66 E-value=9.4 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027050 45 NVQKAIKDAAKRNDLSSAKSLAQELV 70 (229)
Q Consensus 45 kl~~~Ik~aakkg~~~~akilAk~lv 70 (229)
.++++|--|+.+||.++++.|-.+|-
T Consensus 12 aiEQqiyvA~seGd~etv~~Le~QL~ 37 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRKLKAKLK 37 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45688999999999999999987763
No 20
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=52.49 E-value=51 Score=22.85 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 15 QQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 15 ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
-+.++.....|+.-...|+.-+.+|++++..+...|-..
T Consensus 27 l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 27 LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788888999999999999999999999998888654
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.37 E-value=1.4e+02 Score=26.47 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=18.6
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 027050 6 NMIKPKPNPQQLLRDWQRKLRQECRNI 32 (229)
Q Consensus 6 ~~f~~~~~~ke~lr~~~~~Lr~~~R~L 32 (229)
.++.++.||++.+.+....++....++
T Consensus 363 ~vl~G~~t~eeal~~~~~~i~~~l~~~ 389 (471)
T 3mq9_A 363 NAASGRQTVDEALKDAQTRITAARDGL 389 (471)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 344446789999888887777655443
No 22
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=48.63 E-value=93 Score=24.15 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 20 DWQRKLRQECRNIERQIRDIQREEKNVQKAIKD 52 (229)
Q Consensus 20 ~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~ 52 (229)
+....|...+..+|+++..|+.+.+++..++++
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~ 61 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQTVVDQVRR 61 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888999999999999999999888853
No 23
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=44.76 E-value=58 Score=20.70 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Q 027050 42 EEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLY 80 (229)
Q Consensus 42 ~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~ 80 (229)
+..-++.-|+.|.+.|..+.+.+|..+|-.....+.++.
T Consensus 10 Q~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 10 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 344566789999999999999999999988888877664
No 24
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.67 E-value=79 Score=21.88 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 22 QRKLRQECRNIERQIRDIQREEKNVQKAIKD 52 (229)
Q Consensus 22 ~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~ 52 (229)
-+..++....|+..|.+|+.+-..+..++-.
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456677778888888888888888877743
No 25
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.40 E-value=72 Score=20.54 Aligned_cols=39 Identities=26% Similarity=0.512 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAK 55 (229)
Q Consensus 17 ~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aak 55 (229)
++++....|++..+.|.+-...=++-.+.|+.-+++.++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555556555555555544445555556666666554
No 26
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.38 E-value=1.1e+02 Score=21.62 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHH
Q 027050 15 QQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLA--QELVRSRKTV-NRLYENKAQMNSISM 91 (229)
Q Consensus 15 ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilA--k~lvr~rk~~-~~l~~~~a~l~sv~~ 91 (229)
.+.+..-...|......|-.++..+++++..+..+|..+-.. +.+.-. ....+-++.. .++..+.-.+.||..
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E----~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~ 81 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAE----AERLDQEEAQYQREYSEFKRQQLELDDELKSVEN 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888999999999999999999999998765221 111111 1233333333 446677777888888
Q ss_pred HHHHHHH
Q 027050 92 HLGESVA 98 (229)
Q Consensus 92 ql~ta~~ 98 (229)
|+..+..
T Consensus 82 q~~~~~~ 88 (96)
T 3q8t_A 82 QMRYAQM 88 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 27
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=35.85 E-value=1e+02 Score=20.84 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Q 027050 45 NVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLY 80 (229)
Q Consensus 45 kl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~ 80 (229)
.++.-|+.|.+.+..+.+.+|..+|-....++.++.
T Consensus 31 ~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 31 NITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 345778888999999999999999988888776653
No 28
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.74 E-value=1.2e+02 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 15 QQLLRDWQRKLRQECRNIERQIRDIQREEKNVQK 48 (229)
Q Consensus 15 ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~ 48 (229)
..++......|..++++|+++|..||......+.
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456667777777777777777777755544443
No 29
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=35.62 E-value=90 Score=24.84 Aligned_cols=47 Identities=6% Similarity=0.151 Sum_probs=32.4
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 6 NMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKD 52 (229)
Q Consensus 6 ~~f~~~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~ 52 (229)
.||......+..++.....|++..+.|++.+..|+++...+...|..
T Consensus 35 ~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~ 81 (174)
T 2p22_A 35 KILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDV 81 (174)
T ss_dssp HTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666677777777777777777777777777666666544
No 30
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=33.41 E-value=96 Score=22.51 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=26.9
Q ss_pred HHhhhchHHHHHhhHhhhccC--ccchHHHHHHHHHHHHHHhcchhhhhCchhh
Q 027050 135 EMTKAGVIEEFVNDAVDTALD--SEDIEEEIEEEVDKVLTAIAGETAAQLPEAV 186 (229)
Q Consensus 135 e~~~~~~~~e~m~d~~d~~~d--~~~~eee~d~~v~qvldEig~~~~~~l~~~p 186 (229)
++...-...+=|+++|...++ +..++++.+++++..-.+. +..+++.++
T Consensus 14 ei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~---l~~~~l~~~ 64 (104)
T 3um3_B 14 DIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEE---LDKNLLEIS 64 (104)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH---HHHHhhccC
Confidence 333333344455667776663 2335667777777666553 445555443
No 31
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.57 E-value=1.3e+02 Score=21.16 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 38 DIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMN 87 (229)
Q Consensus 38 ~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~~~~a~l~ 87 (229)
.||.+-+.|+.+|...-.++.....-+|-..+-..|+++..+..-+++|.
T Consensus 27 ~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 27 FLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444333333334566777777777777776666643
No 32
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=30.35 E-value=1.2e+02 Score=21.81 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 027050 17 LLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTV 76 (229)
Q Consensus 17 ~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~~~~akilAk~lvr~rk~~ 76 (229)
-+....+.++.. .+.++-.++..+|..+...|+.+.+.-++.++++.+++.
T Consensus 90 ~i~~y~~~v~~~---------~~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 90 ELEDYIRHVLNR---------PKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHTH---------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 356665555531 223334445588888888999998888888888887654
No 33
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.11 E-value=2e+02 Score=21.14 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 027050 16 QLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN 57 (229)
Q Consensus 16 e~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg 57 (229)
+.+...+..-..++-.|++++.+|......+...|++.-.+|
T Consensus 24 ~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 24 EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444555566666666666666666666654444
No 34
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.65 E-value=1.4e+02 Score=18.76 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=16.7
Q ss_pred ChhhhhhhCC-CCCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 1 MEKVMNMIKP-KPNPQ--QLLRDWQRKLRQECRNIERQIRDIQ 40 (229)
Q Consensus 1 M~~~~~~f~~-~~~~k--e~lr~~~~~Lr~~~R~LdRe~~~le 40 (229)
++||....|. +|++- |.|+.-...|+..+-.|..++..+.
T Consensus 4 lefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 4 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577665652 34433 5577666667766555555555444
No 35
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=23.56 E-value=50 Score=17.52 Aligned_cols=14 Identities=57% Similarity=0.800 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHhhh
Q 027050 215 KELEEIRARLAKVR 228 (229)
Q Consensus 215 ~~~ddl~~RL~aLr 228 (229)
.+++|.|+||...|
T Consensus 8 keled~qerlrk~r 21 (26)
T 4g3b_A 8 KELEDXQERLRKXR 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35688889987654
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.47 E-value=9.8e+02 Score=27.60 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcchhhhhCchhhhh
Q 027050 165 EEVDKVLTAIAGETAAQLPEAVRK 188 (229)
Q Consensus 165 ~~v~qvldEig~~~~~~l~~~p~~ 188 (229)
+++...-++.--++..-.|..|.-
T Consensus 1990 ~ei~~~k~~~e~dL~~A~Pa~Pkr 2013 (3245)
T 3vkg_A 1990 KEIAVQKVKAYADLEKAEPTGPLR 2013 (3245)
T ss_dssp HHHHHHHHHHHHCC-------CHH
T ss_pred HHHHHHHHHHHHHHhhcCCCChHH
Confidence 444444455545566666776664
No 37
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.39 E-value=4.5e+02 Score=23.66 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 027050 20 DWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRND 58 (229)
Q Consensus 20 ~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg~ 58 (229)
+....|...-|.+..++..|..+.+.+-.+|.++.+.|.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~ 69 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE 69 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334456666777888888888888888899988666553
No 38
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.48 E-value=1.2e+02 Score=21.89 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027050 30 RNIERQIRDIQREEKNVQKAIKD 52 (229)
Q Consensus 30 R~LdRe~~~le~~ekkl~~~Ik~ 52 (229)
+.|..++..|+.+|+.|...|+.
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~ 31 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNI 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544
Done!