Query 027050
Match_columns 229
No_of_seqs 129 out of 726
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 06:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027050.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027050hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 43.3 17 0.0013 24.7 4.8 33 48-80 73-105 (106)
2 d2csga1 b.82.2.12 (A:3-419) Hy 36.3 36 0.0026 28.7 6.7 47 11-57 9-55 (417)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 24.4 43 0.0032 22.2 4.3 33 19-51 71-103 (107)
4 d2azeb1 e.63.1.2 (B:201-301) T 22.8 63 0.0046 21.5 4.8 21 32-52 6-26 (101)
5 d1lrza1 a.2.7.4 (A:245-309) Me 14.3 1.3E+02 0.0096 18.2 7.9 30 71-100 31-60 (65)
6 d2d8da1 a.130.1.1 (A:3-82) Cho 14.0 1.4E+02 0.01 18.2 5.1 35 22-56 3-37 (80)
7 d1ecma_ a.130.1.1 (A:) Chorism 13.5 1.5E+02 0.011 18.4 5.7 36 22-57 3-38 (91)
8 d1ivsa1 a.2.7.3 (A:797-862) Va 13.2 1.3E+02 0.0098 17.7 6.9 60 32-93 2-62 (66)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 13.0 1.7E+02 0.013 18.8 6.5 36 18-53 63-98 (107)
10 d1x4ta1 a.2.15.1 (A:7-86) Pre- 12.3 1.7E+02 0.012 18.6 4.6 27 27-53 46-72 (80)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=43.31 E-value=17 Score=24.65 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Q 027050 48 KAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLY 80 (229)
Q Consensus 48 ~~Ik~aakkg~~~~akilAk~lvr~rk~~~~l~ 80 (229)
..|..++..|+.+.|+.++.++-..|+.+=+.|
T Consensus 73 d~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 73 DDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 457788999999999999999999998875443
No 2
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=36.28 E-value=36 Score=28.72 Aligned_cols=47 Identities=13% Similarity=0.267 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 027050 11 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN 57 (229)
Q Consensus 11 ~~~~ke~lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg 57 (229)
.+++...+++.|+.|+....++..--.+|+..=++...+|+...++|
T Consensus 9 p~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G 55 (417)
T d2csga1 9 PADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQG 55 (417)
T ss_dssp CSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45777889999999999999999999999988888889998877766
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.42 E-value=43 Score=22.19 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 19 RDWQRKLRQECRNIERQIRDIQREEKNVQKAIK 51 (229)
Q Consensus 19 r~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik 51 (229)
.+....|...+..|++++..++.+-..+..+|.
T Consensus 71 ~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.84 E-value=63 Score=21.54 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027050 32 IERQIRDIQREEKNVQKAIKD 52 (229)
Q Consensus 32 LdRe~~~le~~ekkl~~~Ik~ 52 (229)
|..++..|+.+|+.|...|+.
T Consensus 6 L~~El~~L~~~E~~LD~li~~ 26 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDHLMNI 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 5
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=14.34 E-value=1.3e+02 Score=18.22 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 71 RSRKTVNRLYENKAQMNSISMHLGESVAIA 100 (229)
Q Consensus 71 r~rk~~~~l~~~~a~l~sv~~ql~ta~~~~ 100 (229)
..+|...++..+..|+++...++..|....
T Consensus 31 ~skK~~nk~~el~~Q~~s~~~ki~Ea~~li 60 (65)
T d1lrza1 31 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 60 (65)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888899999999999988776554
No 6
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=13.99 E-value=1.4e+02 Score=18.23 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027050 22 QRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKR 56 (229)
Q Consensus 22 ~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakk 56 (229)
...||..+-.||+++-.|=.+--.+..+|-+..+.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~~ 37 (80)
T d2d8da1 3 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 37 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45788899999999999998888888887665443
No 7
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=13.54 E-value=1.5e+02 Score=18.45 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 027050 22 QRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRN 57 (229)
Q Consensus 22 ~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~aakkg 57 (229)
...||+.+-.||+++-.|=.+-..+-.+|-..-+.+
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~ 38 (91)
T d1ecma_ 3 LLALREKISALDEKLLALLAERRELAVEVGKAKLLS 38 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457899999999999999999999998887654443
No 8
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.18 E-value=1.3e+02 Score=17.69 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 32 IERQIRDIQREEKNVQKAIKDAAKR-NDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHL 93 (229)
Q Consensus 32 LdRe~~~le~~ekkl~~~Ik~aakk-g~~~~akilAk~lvr~rk~~~~l~~~~a~l~sv~~ql 93 (229)
++.++.+|+++-.++..+|...-++ +|..-..-.=.++|.. ...++..+..++..+..+|
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~--~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEA--EEARLKENLEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666776665443 4433322222223322 1233444444444444443
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.98 E-value=1.7e+02 Score=18.84 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 18 LRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 18 lr~~~~~Lr~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
..+....|....-.|+..+.+|++..+.+..++...
T Consensus 63 ~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888889999999999999998888765
No 10
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.34 E-value=1.7e+02 Score=18.59 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027050 27 QECRNIERQIRDIQREEKNVQKAIKDA 53 (229)
Q Consensus 27 ~~~R~LdRe~~~le~~ekkl~~~Ik~a 53 (229)
..+|+|.-+|++|-++..+=+..|+.+
T Consensus 46 ~~IRdLNDeINkL~reK~~WE~rI~eL 72 (80)
T d1x4ta1 46 FRIRDLNDEINKLLREKGHWEVRIKEL 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999764
Done!