BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027051
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
Length = 276
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 7 GVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE----FKLEFFFGPNPY 62
+P FWL A++NN+ ++ I DEE L YL DI+ + E F L F F PNP+
Sbjct: 76 NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPF 135
Query: 63 FKNYVLAKKFIM-----IDEVKLIFDEAIGSKIKWYPEKCL-------------TRECST 104
F N VL K + M +E L+ EA + I WY K + +RE T
Sbjct: 136 FSNSVLTKTYHMKCVDCDNEPVLLHTEA--TVIDWYDNKNILKKNVVKKQHNKNSREVKT 193
Query: 105 RXXXXXXXXXXXXXXXXXYDESIDVKLLHQ---------LEHDYKIGVTIKKEIVCHAIS 155
S +K L + +E DY++ +TIK+ I+ +A+
Sbjct: 194 VQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVD 253
Query: 156 WFCG 159
+F G
Sbjct: 254 YFLG 257
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly
Protein (Nap)
Length = 359
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 7 GVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE----FKLEFFFGPNPY 62
+P FWL A++NN+ ++ I DEE L YL DI+ + E F L F+F NP+
Sbjct: 110 NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPF 169
Query: 63 FKNYVLAKKFIM-----IDEVKLIFDEAIGSKIKWYPEKCL-------------TRECST 104
F N VL K + M +E L+ EA + I WY K + +RE T
Sbjct: 170 FSNSVLTKTYHMKCVDCDNEPVLLHTEA--TVIDWYDNKNILKKNVVKKQHNKNSREVKT 227
Query: 105 RXXXXXXXXXXXXXXXXXYDESIDVKLLHQ---------LEHDYKIGVTIKKEIVCHAIS 155
S +K L + +E DY++ +TIK+ I+ +A+
Sbjct: 228 VQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVD 287
Query: 156 WFCG 159
++ G
Sbjct: 288 YYLG 291
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum
pdb|3GYW|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum At 2.4 A Resolution
Length = 249
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 7 GVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE----FKLEFFFGPNPY 62
+P FWL A++NN+ ++ I DEE L YL DI+ + E F L F+F NP+
Sbjct: 66 NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPF 125
Query: 63 FKNYVLAKKFIM-----IDEVKLIFDEAIGSKIKWYPEKCL-------------TRECST 104
F N VL K + M +E L+ EA + I WY K + +RE T
Sbjct: 126 FSNSVLTKTYHMKCVDCDNEPVLLHTEA--TVIDWYDNKNILKKNVVKKQHNKNSREVKT 183
Query: 105 RXXXXXXXXXXXXXXXXXYDESIDVKLLHQ---------LEHDYKIGVTIKKEIVCHAIS 155
S +K L + +E DY++ +TIK+ I+ +A+
Sbjct: 184 VQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVD 243
Query: 156 WFCG 159
++ G
Sbjct: 244 YYLG 247
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
Length = 292
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 26/182 (14%)
Query: 6 KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC-PEFKLEFFF--GPNPY 62
KG+P+FWLTA++N ++ IT D E L+YL DI L P FKL F F NP+
Sbjct: 110 KGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPF 169
Query: 63 FKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWYP---------EKCLTRECSTRXXXX 109
F N +L K + E+ I+D A G +I W E R +T+
Sbjct: 170 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRT 229
Query: 110 XXXXXXXXXXXXXYD----------ESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCG 159
+D E ++ L +L DY IG +K +++ A+ WF G
Sbjct: 230 IEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTG 289
Query: 160 DA 161
A
Sbjct: 290 AA 291
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 6 KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC-PEFKLEFFF--GPNPY 62
KG+P+FWLTA++N ++ IT D E L+YL DI L P FKL F F NP+
Sbjct: 183 KGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPF 242
Query: 63 FKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWYP---------EKCLTRECSTRXXXX 109
F N +L K + E+ I+D A G +I W E R +T+
Sbjct: 243 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRT 302
Query: 110 XXXXXXXXXXXXXYDES----------IDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCG 159
+D ++ L +L DY IG +K +++ A+ WF G
Sbjct: 303 IEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTG 362
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
Length = 225
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 8 VPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE-FKLEFFFGPNPYFKNY 66
+PNFW+T N+ ++ + + DEEA+ YL ++ + ++++F+F NPYF+N
Sbjct: 78 IPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137
Query: 67 VLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECS 103
VL+K+F M + + ++IKW K +T+ S
Sbjct: 138 VLSKEFHMNESGDP---SSKSTEIKWKSGKDMTKRSS 171
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 152 HAISWFCGDATCGRRTKRKIEYDN-------PAAGNLVQKIESLRKIEIELNKL----EA 200
+ + + CG G T+R E + P GN+V+ + +RK+ ++ K+ E
Sbjct: 121 YTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSED 180
Query: 201 EFLEKRRKEEANYVKLCQ 218
E + + + A Y L Q
Sbjct: 181 ELMTEAKNLGAPYELLLQ 198
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 152 HAISWFCGDATCGRRTKRKIEYDN-------PAAGNLVQKIESLRKIEIELNKL----EA 200
+ + + CG G T+R E + P GN+V+ + +RK+ ++ K+ E
Sbjct: 124 YTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSED 183
Query: 201 EFLEKRRKEEANYVKLCQ 218
E + + + A Y L Q
Sbjct: 184 ELMTEAKNLGAPYELLLQ 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,254,927
Number of Sequences: 62578
Number of extensions: 220340
Number of successful extensions: 646
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 17
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)