Query 027054
Match_columns 229
No_of_seqs 118 out of 1172
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02698 Peptidase_C1A_Cathepsi 100.0 6.7E-48 1.4E-52 325.8 21.0 195 5-210 34-239 (239)
2 cd02620 Peptidase_C1A_Cathepsi 100.0 9E-48 2E-52 324.4 20.0 196 5-206 31-235 (236)
3 KOG1542 Cysteine proteinase Ca 100.0 2.6E-47 5.6E-52 325.8 14.0 175 10-208 189-370 (372)
4 cd02621 Peptidase_C1A_Cathepsi 100.0 2E-46 4.3E-51 317.5 18.3 190 6-210 33-243 (243)
5 cd02248 Peptidase_C1A Peptidas 100.0 1.3E-44 2.9E-49 298.9 18.2 179 4-205 26-208 (210)
6 PTZ00203 cathepsin L protease; 100.0 1.4E-44 3.1E-49 319.2 19.2 182 6-209 154-340 (348)
7 KOG1543 Cysteine proteinase Ca 100.0 3.5E-44 7.6E-49 314.5 17.2 181 6-209 138-323 (325)
8 PTZ00200 cysteine proteinase; 100.0 1.2E-43 2.5E-48 321.4 17.5 178 5-208 262-444 (448)
9 PTZ00364 dipeptidyl-peptidase 100.0 2.3E-43 5E-48 324.3 18.5 190 6-209 239-459 (548)
10 PTZ00049 cathepsin C-like prot 100.0 1.1E-42 2.3E-47 323.5 19.0 191 22-215 440-682 (693)
11 PTZ00021 falcipain-2; Provisio 100.0 2.1E-42 4.7E-47 314.6 17.4 178 5-208 293-487 (489)
12 PF00112 Peptidase_C1: Papain 100.0 4.1E-42 8.9E-47 284.6 13.8 184 4-208 28-219 (219)
13 PTZ00462 Serine-repeat antigen 100.0 1.9E-37 4.1E-42 296.0 18.3 210 5-220 559-792 (1004)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 5.2E-37 1.1E-41 254.4 16.2 178 3-199 22-216 (223)
15 KOG1544 Predicted cysteine pro 100.0 3.2E-37 6.8E-42 261.4 9.4 188 20-213 256-464 (470)
16 smart00645 Pept_C1 Papain fami 100.0 3.5E-36 7.6E-41 242.8 14.0 141 4-205 27-171 (174)
17 COG4870 Cysteine protease [Pos 99.8 4.6E-19 9.9E-24 153.8 8.2 179 3-199 124-318 (372)
18 cd00585 Peptidase_C1B Peptidas 99.7 6.8E-17 1.5E-21 146.3 7.7 75 119-194 303-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.0 2.3E-09 5E-14 97.5 8.9 96 115-215 300-417 (438)
20 COG3579 PepC Aminopeptidase C 97.3 7.6E-05 1.7E-09 65.1 1.3 40 154-193 361-401 (444)
21 PF13529 Peptidase_C39_2: Pept 96.1 0.033 7.1E-07 41.9 7.3 60 110-179 85-144 (144)
22 PF09778 Guanylate_cyc_2: Guan 93.6 0.24 5.2E-06 41.1 6.4 68 97-164 96-170 (212)
23 PF05543 Peptidase_C47: Stapho 93.1 0.42 9.2E-06 38.3 6.8 65 113-194 90-154 (175)
24 COG4990 Uncharacterized protei 91.7 0.43 9.4E-06 38.5 5.2 48 112-180 121-168 (195)
25 PF14399 Transpep_BrtH: NlpC/p 88.9 1.5 3.2E-05 38.1 6.8 54 114-175 78-131 (317)
26 KOG4128 Bleomycin hydrolases a 86.2 0.055 1.2E-06 47.6 -3.7 61 154-218 371-434 (457)
27 cd02549 Peptidase_C39A A sub-f 82.2 5.4 0.00012 29.8 6.3 45 117-179 70-114 (141)
28 PF01640 Peptidase_C10: Peptid 81.9 7.5 0.00016 31.6 7.3 53 114-190 140-192 (192)
29 PF12385 Peptidase_C70: Papain 79.3 5.8 0.00012 31.4 5.4 37 113-164 97-133 (166)
30 cd00044 CysPc Calpains, domain 77.0 7.6 0.00017 34.0 6.3 27 154-181 235-263 (315)
31 KOG4621 Uncharacterized conser 46.1 58 0.0013 25.0 5.0 62 113-177 58-131 (167)
32 smart00230 CysPc Calpain-like 37.0 1.1E+02 0.0024 26.8 6.3 27 154-181 227-255 (318)
33 cd00585 Peptidase_C1B Peptidas 28.5 30 0.00064 32.1 1.3 62 6-67 70-159 (437)
34 PF00648 Peptidase_C2: Calpain 24.8 2.1E+02 0.0045 24.5 5.8 28 154-181 213-243 (298)
35 PLN00115 pollen allergen group 22.3 53 0.0012 24.7 1.4 24 156-184 48-73 (118)
36 PF15528 Toxin_48: Putative to 21.7 45 0.00098 27.1 1.0 56 159-222 29-89 (189)
37 PTZ00312 inositol-1,4,5-tripho 21.2 53 0.0011 29.0 1.3 24 180-203 62-85 (356)
38 smart00276 GLECT Galectin. Gal 21.0 55 0.0012 24.4 1.3 13 173-185 51-64 (128)
No 1
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=6.7e-48 Score=325.78 Aligned_cols=195 Identities=32% Similarity=0.682 Sum_probs=153.6
Q ss_pred hchHHHHhcccc-ccC---CCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCCccCCCCCCCCCCCCCCC
Q 027054 5 RTNRDALSSSPY-VSL---QNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPA 80 (229)
Q Consensus 5 ~~~~~a~~s~~~-~~~---~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~e~~~PY~~~~~~~~~~c~~~ 80 (229)
-|++.+||+... +++ +.++||+|||+||+. ++||+||++..||+|++++|+++|++|||.... ..|.+.
T Consensus 34 fa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~~~a~~~~~~~Gl~~e~~yPY~~~~----~~C~~~ 106 (239)
T cd02698 34 HGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDPGGVYEYAHKHGIPDETCNPYQAKD----GECNPF 106 (239)
T ss_pred HHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCHHHHHHHHHHcCcCCCCeeCCcCCC----CCCcCC
Confidence 356666665442 222 468999999999996 689999999999999999999999999997642 123222
Q ss_pred CCCccccc--ccccccccccccceeEeeeEEeCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEE
Q 027054 81 YPTPKCVR--KCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAV 158 (229)
Q Consensus 81 ~~~~~~~~--~c~~~~~~~~~~~~~~i~~y~~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav 158 (229)
..+..|.. .|.... ....+.+..|....+.++||++|+++|||+++|.+.++|+.|++|||+..++...++|+|
T Consensus 107 ~~~~~c~~~~~c~~~~----~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV 182 (239)
T cd02698 107 NRCGTCNPFGECFAIK----NYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINHII 182 (239)
T ss_pred CCCCCcccCccccccc----ccceEEeeeceecCCHHHHHHHHHHcCCEEEEEEecccccccCCeEEccCCCCCcCCeEE
Confidence 22222321 333221 133466777772245688999999999999999998899999999998876666689999
Q ss_pred EEEEecccCCCceEEEEEcCCCCCCCCCCeEEEEeCC-----CccCcCcceeEEeec
Q 027054 159 KLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-----NECGIEEDVVAGLPS 210 (229)
Q Consensus 159 ~iVGyg~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~-----n~cgi~~~~~~~~p~ 210 (229)
+|||||++.++++|||||||||++||++|||||+|+. |+||||+.++++.|.
T Consensus 183 ~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~~~ 239 (239)
T cd02698 183 SVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWADPI 239 (239)
T ss_pred EEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEeeC
Confidence 9999994434899999999999999999999999999 999999999999884
No 2
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=9e-48 Score=324.41 Aligned_cols=196 Identities=50% Similarity=0.976 Sum_probs=152.1
Q ss_pred hchHHHHhcccc-ccC--CCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCCccCCCCCC-CCC---CCC
Q 027054 5 RTNRDALSSSPY-VSL--QNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTG-CSH---PGC 77 (229)
Q Consensus 5 ~~~~~a~~s~~~-~~~--~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~e~~~PY~~~~~-~~~---~~c 77 (229)
-|++.+||+... +++ +.++||+||||||+.. .+.||+||++..||+|++++|+++|++|||..... |.+ ..|
T Consensus 31 fa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~ 109 (236)
T cd02620 31 FSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPC 109 (236)
T ss_pred HHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHHHHHhcCCCcCCEecCcCCCCccCCCCCCCC
Confidence 356667777553 344 6799999999999972 36899999999999999999999999999976522 111 112
Q ss_pred CCCCCCcccccccccccc-cccccceeEeeeE-EeCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCC
Q 027054 78 EPAYPTPKCVRKCVKKNQ-LWRNSKHYSISAY-RINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGG 155 (229)
Q Consensus 78 ~~~~~~~~~~~~c~~~~~-~~~~~~~~~i~~y-~~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~ 155 (229)
. ....|...|..... .+.... +++..+ .+..++++||++|+++|||+++|.+.++|+.|++|||+..++...++
T Consensus 110 ~---~~~~~~~~C~~~~~~~~~~~~-~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~~~~~~~~~ 185 (236)
T cd02620 110 C---GTPYCTPKCQDGCEKTYEEDK-HKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTSGKQLGG 185 (236)
T ss_pred C---CCCCCCCCCCcCCccccceee-eeecceeeeCCHHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEeecCCCCcCC
Confidence 1 12233344543321 122222 334444 36667899999999999999999999999999999998766666679
Q ss_pred cEEEEEEecccCCCceEEEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeE
Q 027054 156 HAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 206 (229)
Q Consensus 156 Hav~iVGyg~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~ 206 (229)
|||+||||| ++++.+|||||||||++||++|||||+|+.|+|||+++++.
T Consensus 186 HaV~iVGyg-~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~ 235 (236)
T cd02620 186 HAVKIIGWG-VENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA 235 (236)
T ss_pred eEEEEEEEe-ccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence 999999999 66889999999999999999999999999999999999874
No 3
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-47 Score=325.76 Aligned_cols=175 Identities=31% Similarity=0.618 Sum_probs=152.3
Q ss_pred HHhc-cccccCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHH-HHHcCccCCCCccCCCCCCCCCCCCCCCCCCcccc
Q 027054 10 ALSS-SPYVSLQNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY-FVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCV 87 (229)
Q Consensus 10 a~~s-~~~~~~~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~-~~~~Gi~~e~~~PY~~~~~~~~~~c~~~~~~~~~~ 87 (229)
++|. +.+++|+.++|||||||||+. .++||+||.+..||+| ++..|+..|++|||.+.. .
T Consensus 189 ~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~----------------~ 250 (372)
T KOG1542|consen 189 AVEGAWAIATGKLVSLSEQELVDCDS--CDNGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKK----------------G 250 (372)
T ss_pred hhhhHHHhhcCcccccchhhhhcccC--cCCcCCCCChhHHHHHHHHhCCccccccCCccccC----------------C
Confidence 4454 456789999999999999997 7899999999999999 556789999999997761 1
Q ss_pred cccccccccccccceeEeeeEE-eCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEc---cCCCccCCcEEEEEEe
Q 027054 88 RKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKH---ITGDVMGGHAVKLIGW 163 (229)
Q Consensus 88 ~~c~~~~~~~~~~~~~~i~~y~-~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~---~~~~~~~~Hav~iVGy 163 (229)
..|...+. ...+.|..|. ++.|+++|.+.|.++|||+|+|++ ..+++|.+||..+ .|....++|+|+||||
T Consensus 251 ~~C~~~~~----~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa-~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGy 325 (372)
T KOG1542|consen 251 NQCHFDKS----KIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINA-KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGY 325 (372)
T ss_pred Cccccchh----hceEEEeccEecCCCHHHHHHHHHhcCCeEEEEch-HHHHHhcccccCCCcccCCccccCceEEEEee
Confidence 26665542 4578899998 899999999999999999999995 7899999999988 4666668999999999
Q ss_pred cccCC-CceEEEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeEEe
Q 027054 164 GTSDD-GEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGL 208 (229)
Q Consensus 164 g~~~~-~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~ 208 (229)
| ... .++|||||||||++||++||+||.||.|.|||++.++.+.
T Consensus 326 G-~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 326 G-SSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred c-CCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence 9 555 8999999999999999999999999999999999988654
No 4
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=2e-46 Score=317.46 Aligned_cols=190 Identities=37% Similarity=0.742 Sum_probs=145.3
Q ss_pred chHHHHhcccc-ccCC------CCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCCccCCCCCCCCCCCCC
Q 027054 6 TNRDALSSSPY-VSLQ------NLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCE 78 (229)
Q Consensus 6 ~~~~a~~s~~~-~~~~------~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~e~~~PY~~~~~~~~~~c~ 78 (229)
|++.++|+... ++++ .+.||+|||+||+. .+.||+||++..|++|++++|+++|++|||... .
T Consensus 33 a~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~---~----- 102 (243)
T cd02621 33 ASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFPFLVGKFAEDFGIVTEDYFPYTAD---D----- 102 (243)
T ss_pred HHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCHHHHHHHHHhcCcCCCceeCCCCC---C-----
Confidence 55566666443 2333 78999999999996 468999999999999999999999999999651 0
Q ss_pred CCCCCcccccccccccccccccceeEeeeEEeCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEcc-----CCC--
Q 027054 79 PAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI-----TGD-- 151 (229)
Q Consensus 79 ~~~~~~~~~~~c~~~~~~~~~~~~~~i~~y~~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~-----~~~-- 151 (229)
.+.|..... ....+.......+..+....++++||++|+++|||+++|++.++|++|++|||+.. |..
T Consensus 103 ----~~~C~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~ 177 (243)
T cd02621 103 ----DRPCKASPS-ECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDN 177 (243)
T ss_pred ----CCCCCCCcc-ccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEecccccccCCeEECcCCccccccccc
Confidence 112221110 00001111222333444345778999999999999999999999999999999875 211
Q ss_pred ------ccCCcEEEEEEecccC-CCceEEEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeEEeec
Q 027054 152 ------VMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPS 210 (229)
Q Consensus 152 ------~~~~Hav~iVGyg~~~-~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~p~ 210 (229)
..++|+|+|||||++. ++.+|||||||||++||++|||||+|+.|.|||++++++++|.
T Consensus 178 ~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~~~~ 243 (243)
T cd02621 178 DNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAYPI 243 (243)
T ss_pred ccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccceEeeccC
Confidence 2478999999999433 3889999999999999999999999999999999999999884
No 5
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1.3e-44 Score=298.92 Aligned_cols=179 Identities=33% Similarity=0.635 Sum_probs=149.8
Q ss_pred hhchHHHHhcccc-ccCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCCccCCCCCCCCCCCCCCCCC
Q 027054 4 TRTNRDALSSSPY-VSLQNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP 82 (229)
Q Consensus 4 ~~~~~~a~~s~~~-~~~~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~e~~~PY~~~~~~~~~~c~~~~~ 82 (229)
+-|++.+||+.+. +++..++||+|+|++|... .+.+|.||++..||+++++.|+++|++|||...
T Consensus 26 Afa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~------------- 91 (210)
T cd02248 26 AFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYVKNGGLASESDYPYTGK------------- 91 (210)
T ss_pred HhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHHHHCCcCccccCCccCC-------------
Confidence 4466777777553 4668899999999999972 368999999999999999999999999999653
Q ss_pred CcccccccccccccccccceeEeeeEE-eCC-cHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCC-CccCCcEEE
Q 027054 83 TPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-DVMGGHAVK 159 (229)
Q Consensus 83 ~~~~~~~c~~~~~~~~~~~~~~i~~y~-~~~-~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~-~~~~~Hav~ 159 (229)
. ..|..... .+.+++..|. +.. ++++||++|+++|||+++|.+.++|+.|++|||..+++ ...++|||+
T Consensus 92 ~----~~C~~~~~----~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~~~~Hav~ 163 (210)
T cd02248 92 D----GTCKYNSS----KVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVL 163 (210)
T ss_pred C----CCccCCCC----cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCCcCCEEEE
Confidence 1 12332221 3457788887 543 47899999999999999999999999999999988765 556899999
Q ss_pred EEEecccCCCceEEEEEcCCCCCCCCCCeEEEEeCCCccCcCccee
Q 027054 160 LIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 205 (229)
Q Consensus 160 iVGyg~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~ 205 (229)
||||| ++.+.+|||||||||++||++|||||+++.|.|||++++.
T Consensus 164 iVGy~-~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~ 208 (210)
T cd02248 164 LVGYG-TENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYAS 208 (210)
T ss_pred EEEEe-ecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeee
Confidence 99999 6668999999999999999999999999999999997765
No 6
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=1.4e-44 Score=319.20 Aligned_cols=182 Identities=26% Similarity=0.528 Sum_probs=144.6
Q ss_pred chHHHHhccc-cccCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHc---CccCCCCccCCCCCCCCCCCCCCCC
Q 027054 6 TNRDALSSSP-YVSLQNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH---GVVTEECDPYFDSTGCSHPGCEPAY 81 (229)
Q Consensus 6 ~~~~a~~s~~-~~~~~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~---Gi~~e~~~PY~~~~~~~~~~c~~~~ 81 (229)
|+..++|+.. +++++.++||+|||+||+. .+.||+||++..||+|++++ |+.+|++|||.+...
T Consensus 154 a~~~aiEs~~~i~~~~~~~LSeQqLvdC~~--~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~---------- 221 (348)
T PTZ00203 154 SAVGNIESQWAVAGHKLVRLSEQQLVSCDH--VDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNG---------- 221 (348)
T ss_pred hhHHHHHHHHHHhcCCCccCCHHHHHhccC--CCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCC----------
Confidence 4455666643 4567889999999999997 46899999999999999864 588999999976521
Q ss_pred CCcccccccccccccccccceeEeeeEE-eCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEE
Q 027054 82 PTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKL 160 (229)
Q Consensus 82 ~~~~~~~~c~~~~~~~~~~~~~~i~~y~-~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~i 160 (229)
..+ .|..... ......+..|. +..+++.||++|+++|||+++|.+. +|++|++|||+. |.....+|+|+|
T Consensus 222 ~~~----~C~~~~~---~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a~-~f~~Y~~GIy~~-c~~~~~nHaVli 292 (348)
T PTZ00203 222 DVP----ECSNSSE---LAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDAS-SFMSYHSGVLTS-CIGEQLNHGVLL 292 (348)
T ss_pred CCC----cCCCCcc---cccceEecceeecCcCHHHHHHHHHhCCCEEEEEEhh-hhcCccCceeec-cCCCCCCeEEEE
Confidence 011 2322110 01234566777 6667889999999999999999984 899999999985 433346999999
Q ss_pred EEecccCCCceEEEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeEEee
Q 027054 161 IGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 209 (229)
Q Consensus 161 VGyg~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~p 209 (229)
|||| .+++++|||||||||++||++|||||.|+.|.|||+.+++.+..
T Consensus 293 VGYG-~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~~~ 340 (348)
T PTZ00203 293 VGYN-MTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVHV 340 (348)
T ss_pred EEEe-cCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEEec
Confidence 9999 67789999999999999999999999999999999999887743
No 7
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-44 Score=314.48 Aligned_cols=181 Identities=43% Similarity=0.840 Sum_probs=153.2
Q ss_pred chHHHHhccc-cccC-CCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccC-CCCccCCCCCCCCCCCCCCCCC
Q 027054 6 TNRDALSSSP-YVSL-QNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVT-EECDPYFDSTGCSHPGCEPAYP 82 (229)
Q Consensus 6 ~~~~a~~s~~-~~~~-~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~-e~~~PY~~~~~~~~~~c~~~~~ 82 (229)
|+..|||.+. ++++ ..+.||+|+|+||... .++||+||++..|++|++++|+++ ++.|||....
T Consensus 138 aa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~~G~~t~~~~Ypy~~~~------------ 204 (325)
T KOG1543|consen 138 AATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKKNGGVTECENYPYIGKD------------ 204 (325)
T ss_pred HHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHHhCCCCCCcCCCCcCCC------------
Confidence 5667777765 5567 8999999999999985 688999999999999999999888 9999996651
Q ss_pred CcccccccccccccccccceeEeeeEE-eCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCc-cCCcEEEE
Q 027054 83 TPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDV-MGGHAVKL 160 (229)
Q Consensus 83 ~~~~~~~c~~~~~~~~~~~~~~i~~y~-~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~-~~~Hav~i 160 (229)
..|..... ...+.+.++. ++.++++|+.+|+.+|||.|+|.+.++|+.|++|||..+++.. ..+|+|+|
T Consensus 205 -----~~C~~~~~----~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~~~~~~~~~~Hav~i 275 (325)
T KOG1543|consen 205 -----GTCKSNKK----DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAEEKGDDKEGDHAVLI 275 (325)
T ss_pred -----CCccCCCc----cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCceEeCCCCCCCCCCceEEE
Confidence 14443332 2234444444 7778999999999999999999999999999999999997775 48999999
Q ss_pred EEecccCCCceEEEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeEEee
Q 027054 161 IGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 209 (229)
Q Consensus 161 VGyg~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~p 209 (229)
||||+ .++.+|||||||||++||++|||||.|+.+.|+|+..++++.|
T Consensus 276 VGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 276 VGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPI 323 (325)
T ss_pred EEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCC
Confidence 99995 7788999999999999999999999999999999999886433
No 8
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.2e-43 Score=321.45 Aligned_cols=178 Identities=29% Similarity=0.574 Sum_probs=143.0
Q ss_pred hchHHHHhcccc-ccCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCCccCCCCCCCCCCCCCCCCCC
Q 027054 5 RTNRDALSSSPY-VSLQNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPT 83 (229)
Q Consensus 5 ~~~~~a~~s~~~-~~~~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~e~~~PY~~~~~~~~~~c~~~~~~ 83 (229)
-|++.++|+... +++..++||+|||+||+. .+.||+||++..||+|++++|+++|++|||.+. .
T Consensus 262 Fat~~aiEs~~~i~~~~~~~LSeQqLvDC~~--~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~-------------~ 326 (448)
T PTZ00200 262 FSSVGSVESLYKIYRDKSVDLSEQELVNCDT--KSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAK-------------D 326 (448)
T ss_pred HhHHHHHHHHHHHhcCCCeecCHHHHhhccC--ccCCCCCCcHHHHHHHHhhcCccccccCCCCCC-------------C
Confidence 356667777554 367889999999999996 478999999999999999999999999999765 1
Q ss_pred cccccccccccccccccceeEeeeEEeCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEEEe
Q 027054 84 PKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGW 163 (229)
Q Consensus 84 ~~~~~~c~~~~~~~~~~~~~~i~~y~~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGy 163 (229)
..|.... ...+.+..|.+..+.+.++++| ..|||+|+|.+.++|+.|++|||+..|+.. .+|||+||||
T Consensus 327 ----~~C~~~~-----~~~~~i~~y~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~~-~nHaV~lVGy 395 (448)
T PTZ00200 327 ----GKCVVSS-----TKKVYIDSYLVAKGKDVLNKSL-VISPTVVYIAVSRELLKYKSGVYNGECGKS-LNHAVLLVGE 395 (448)
T ss_pred ----CCCcCCC-----CCeeEecceEecCHHHHHHHHH-hcCCEEEEeecccccccCCCCccccccCCC-CcEEEEEEEe
Confidence 2333222 1234577777444445555555 789999999998899999999998766544 6999999999
Q ss_pred ccc-CCCceEEEEEcCCCCCCCCCCeEEEEeC---CCccCcCcceeEEe
Q 027054 164 GTS-DDGEDYWILANQWNRSWGADGYFKIKRG---SNECGIEEDVVAGL 208 (229)
Q Consensus 164 g~~-~~~~~ywivkNSWG~~WG~~Gy~~i~~~---~n~cgi~~~~~~~~ 208 (229)
|.+ +++.+|||||||||++||++|||||+|+ .|.|||++.+.+++
T Consensus 396 G~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~ 444 (448)
T PTZ00200 396 GYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPV 444 (448)
T ss_pred cccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeE
Confidence 953 4678999999999999999999999995 58999999987543
No 9
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=2.3e-43 Score=324.27 Aligned_cols=190 Identities=29% Similarity=0.564 Sum_probs=146.4
Q ss_pred chHHHHhccc-ccc------CCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCCc--cCCCCCCCCCCC
Q 027054 6 TNRDALSSSP-YVS------LQNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECD--PYFDSTGCSHPG 76 (229)
Q Consensus 6 ~~~~a~~s~~-~~~------~~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~e~~~--PY~~~~~~~~~~ 76 (229)
|+..|||+.. +++ ++.+.||+|+|+||+. .++||+||++..|++|++++|+++|++| ||.+....
T Consensus 239 Aav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~GCdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~---- 312 (548)
T PTZ00364 239 AALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGV---- 312 (548)
T ss_pred HHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCCCCCCcHHHHHHHHHhCCcccccccCCCCCCCCCC----
Confidence 4455566543 222 4578999999999996 4789999999999999999999999999 99654210
Q ss_pred CCCCCCCcccccccccccccccccceeEeeeEE-eCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEcc-------
Q 027054 77 CEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI------- 148 (229)
Q Consensus 77 c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~y~-~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~------- 148 (229)
.+.|...+. ...+.......+.+|. +..++++||++|+++|||+++|.+..+|+.|++|||...
T Consensus 313 ------~~~Ck~~~~--~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~ 384 (548)
T PTZ00364 313 ------ERACKTRRP--SRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDD 384 (548)
T ss_pred ------CCCCCCCcc--cceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeecccccc
Confidence 112222111 1111112234455555 456778999999999999999999989999999987521
Q ss_pred --CC----------CccCCcEEEEEEecccCCCceEEEEEcCCCC--CCCCCCeEEEEeCCCccCcCcceeEEee
Q 027054 149 --TG----------DVMGGHAVKLIGWGTSDDGEDYWILANQWNR--SWGADGYFKIKRGSNECGIEEDVVAGLP 209 (229)
Q Consensus 149 --~~----------~~~~~Hav~iVGyg~~~~~~~ywivkNSWG~--~WG~~Gy~~i~~~~n~cgi~~~~~~~~p 209 (229)
++ ....+|||+|||||+++++.+|||||||||+ +||++|||||.||.|+||||++++.+.|
T Consensus 385 ~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~ 459 (548)
T PTZ00364 385 YSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW 459 (548)
T ss_pred ccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence 11 1246899999999965678899999999999 9999999999999999999999999998
No 10
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=323.53 Aligned_cols=191 Identities=30% Similarity=0.560 Sum_probs=142.1
Q ss_pred CCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCCccCCCC-CCCCCCCCCCCCC---------------Ccc
Q 027054 22 LSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDS-TGCSHPGCEPAYP---------------TPK 85 (229)
Q Consensus 22 ~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~e~~~PY~~~-~~~~~~~c~~~~~---------------~~~ 85 (229)
..||+|+||||+. .+.||+||++..|++|+++.|+++|++|||.+. ..|....+..... .+.
T Consensus 440 ~~LS~QqLLDCs~--~nqGC~GG~~~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 517 (693)
T PTZ00049 440 DLLSIQTVLSCSF--YDQGCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSE 517 (693)
T ss_pred cCcCHHHhcccCC--CCCCcCCCcHHHHHHHHHHCCCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccc
Confidence 4899999999997 478999999999999999999999999999765 3353221100000 011
Q ss_pred cccccccc---cccccccceeEeeeEE-e--------CCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEcc-----
Q 027054 86 CVRKCVKK---NQLWRNSKHYSISAYR-I--------NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI----- 148 (229)
Q Consensus 86 ~~~~c~~~---~~~~~~~~~~~i~~y~-~--------~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~----- 148 (229)
|...|... ....+ ...+.+..|. + ..+++.||++|+.+|||+|+|.+.++|++|++|||+..
T Consensus 518 ~~~~~~~~~~~~~~~~-~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~ 596 (693)
T PTZ00049 518 TQSDMHADFEAPISSE-PARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHA 596 (693)
T ss_pred cccccccccccccccc-ccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccc
Confidence 11111110 00011 1223334444 3 24678999999999999999999889999999999853
Q ss_pred --CCC--------------ccCCcEEEEEEecccC-CCc--eEEEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeEEee
Q 027054 149 --TGD--------------VMGGHAVKLIGWGTSD-DGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 209 (229)
Q Consensus 149 --~~~--------------~~~~Hav~iVGyg~~~-~~~--~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~p 209 (229)
|.. ...+|||+|||||.++ ++. +|||||||||++||++|||||.|+.|.|||+++++++.|
T Consensus 597 ~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~p 676 (693)
T PTZ00049 597 RRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEP 676 (693)
T ss_pred cccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEee
Confidence 211 1358999999999432 453 799999999999999999999999999999999999999
Q ss_pred cCCchh
Q 027054 210 SSKNLV 215 (229)
Q Consensus 210 ~~~~~~ 215 (229)
.+++=.
T Consensus 677 d~~rg~ 682 (693)
T PTZ00049 677 DFSRGA 682 (693)
T ss_pred eccccH
Confidence 998765
No 11
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=2.1e-42 Score=314.56 Aligned_cols=178 Identities=29% Similarity=0.575 Sum_probs=142.7
Q ss_pred hchHHHHhccc-cccCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHc-CccCCCCccCCCCCCCCCCCCCCCCC
Q 027054 5 RTNRDALSSSP-YVSLQNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYP 82 (229)
Q Consensus 5 ~~~~~a~~s~~-~~~~~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~-Gi~~e~~~PY~~~~~~~~~~c~~~~~ 82 (229)
-|+..|||+.. +++++.++||+|||+||+. .+.||+||++..||+|+.+. |+++|++|||.+..
T Consensus 293 FAa~~alEs~~~I~~g~~v~LSeQqLVDCs~--~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~------------ 358 (489)
T PTZ00021 293 FSTVGVVESQYAIRKNELVSLSEQELVDCSF--KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDT------------ 358 (489)
T ss_pred HHHHHHHHHHHHHHcCCCcccCHHHHhhhcc--CCCCCCCcchHhhhhhhhhccccCcccccCccCCC------------
Confidence 35667777754 5577899999999999996 47899999999999999765 89999999996541
Q ss_pred CcccccccccccccccccceeEeeeEE-eCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEE
Q 027054 83 TPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLI 161 (229)
Q Consensus 83 ~~~~~~~c~~~~~~~~~~~~~~i~~y~-~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iV 161 (229)
.+ .|..... ...+++..|. ++ .++||++|+.+|||+|+|.+..+|++|++|||+..|+.. .+|||+||
T Consensus 359 ~~----~C~~~~~----~~~~~i~~y~~i~--~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~C~~~-~nHAVlIV 427 (489)
T PTZ00021 359 PE----LCNIDRC----KEKYKIKSYVSIP--EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGECGEE-PNHAVILV 427 (489)
T ss_pred CC----ccccccc----cccceeeeEEEec--HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCCCCCCc-cceEEEEE
Confidence 11 2321110 1235667776 54 368999999999999999998899999999998766543 69999999
Q ss_pred EecccCC----------CceEEEEEcCCCCCCCCCCeEEEEeCC----CccCcCcceeEEe
Q 027054 162 GWGTSDD----------GEDYWILANQWNRSWGADGYFKIKRGS----NECGIEEDVVAGL 208 (229)
Q Consensus 162 Gyg~~~~----------~~~ywivkNSWG~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~ 208 (229)
|||+ ++ +.+|||||||||++||++|||||+|+. |+|||.+.+++++
T Consensus 428 GYG~-e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~ 487 (489)
T PTZ00021 428 GYGM-EEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPL 487 (489)
T ss_pred EecC-cCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEe
Confidence 9994 32 247999999999999999999999986 5999999988543
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=4.1e-42 Score=284.61 Aligned_cols=184 Identities=38% Similarity=0.722 Sum_probs=148.3
Q ss_pred hhchHHHHhccccc-c-CCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHH-cCccCCCCccCCCCCCCCCCCCCCC
Q 027054 4 TRTNRDALSSSPYV-S-LQNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVH-HGVVTEECDPYFDSTGCSHPGCEPA 80 (229)
Q Consensus 4 ~~~~~~a~~s~~~~-~-~~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~-~Gi~~e~~~PY~~~~~~~~~~c~~~ 80 (229)
+.|++.++|+.+.+ . ...++||+|+|++|.. ..+.+|+||++..||+++++ +|+++|++|||....
T Consensus 28 afa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~~~~~~~Gi~~e~~~pY~~~~---------- 96 (219)
T PF00112_consen 28 AFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALKYIKNNNGIVTEEDYPYNGNE---------- 96 (219)
T ss_dssp HHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHHHHHHHTSBEBTTTS--SSSS----------
T ss_pred cchhccceecccccccccccccccccccccccc-ccccccccCcccccceeecccCcccccccccccccc----------
Confidence 45666777776655 3 5889999999999997 44679999999999999999 999999999996541
Q ss_pred CCCcccccccccccccccccceeEeeeEE-eC-CcHHHHHHHHHhCCCEEEEEEecC-cccccCCceEEccC-CCccCCc
Q 027054 81 YPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEVSFTVYE-DFAHYKSGVYKHIT-GDVMGGH 156 (229)
Q Consensus 81 ~~~~~~~~~c~~~~~~~~~~~~~~i~~y~-~~-~~~~~ik~~L~~~gPV~v~~~~~~-~f~~y~~Giy~~~~-~~~~~~H 156 (229)
. ..|...... ...+++..|. +. .++++||++|+++|||+++|.+.+ +|..|++|||..+. ....++|
T Consensus 97 --~----~~c~~~~~~---~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~~H 167 (219)
T PF00112_consen 97 --N----PTCKSKKSN---SYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESGGH 167 (219)
T ss_dssp --S----CSSCHSGGG---EEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSEEE
T ss_pred --c----ccccccccc---cccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeeccccccccccc
Confidence 0 234433210 1146777777 43 468999999999999999999988 69999999999874 3456899
Q ss_pred EEEEEEecccCCCceEEEEEcCCCCCCCCCCeEEEEeCCC-ccCcCcceeEEe
Q 027054 157 AVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSN-ECGIEEDVVAGL 208 (229)
Q Consensus 157 av~iVGyg~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n-~cgi~~~~~~~~ 208 (229)
+|+||||| ++.+++|||||||||++||++|||||+|+.+ +|||++.+++++
T Consensus 168 av~iVGy~-~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 168 AVLIVGYD-DENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp EEEEEEEE-EETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred cccccccc-cccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 99999999 6668999999999999999999999999987 999999999753
No 13
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=296.02 Aligned_cols=210 Identities=20% Similarity=0.350 Sum_probs=148.2
Q ss_pred hchHHHHhccccc-cCCCCCCCHHHHhhcCCCCCCCCCCCCC-hHHHHHHHHHcC-ccCCCCccCCCCCCCCCCCCCCCC
Q 027054 5 RTNRDALSSSPYV-SLQNLSLSVNDLLACCGFLCGDGCDGGY-PISAWRYFVHHG-VVTEECDPYFDSTGCSHPGCEPAY 81 (229)
Q Consensus 5 ~~~~~a~~s~~~~-~~~~~~lS~Q~l~dC~~~~~~~gC~Gg~-~~~Al~~~~~~G-i~~e~~~PY~~~~~~~~~~c~~~~ 81 (229)
-|++.++|+.... ++..+.||+|+|+||+....+.||.||+ +..+++|++++| +++|++|||.... ....|....
T Consensus 559 FASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPYt~k~--~~g~Cp~~~ 636 (1004)
T PTZ00462 559 FASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLYNYTK--VGEDCPDEE 636 (1004)
T ss_pred HHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCCccCC--CCCCCCCCc
Confidence 4677788886644 5578999999999999744568999997 556779998875 7889999996420 011222110
Q ss_pred CCccccccccccccc--c--cccceeEeeeEE-eCC-----c----HHHHHHHHHhCCCEEEEEEecCcccccC-CceEE
Q 027054 82 PTPKCVRKCVKKNQL--W--RNSKHYSISAYR-INS-----D----PEDIMAEIYKNGPVEVSFTVYEDFAHYK-SGVYK 146 (229)
Q Consensus 82 ~~~~~~~~c~~~~~~--~--~~~~~~~i~~y~-~~~-----~----~~~ik~~L~~~gPV~v~~~~~~~f~~y~-~Giy~ 146 (229)
.. ...|...... + .......+.+|. +.. + ++.||++|+++|||+|+|.+. +|+.|. +|||.
T Consensus 637 ~~---w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs-df~~Y~~sGIyv 712 (1004)
T PTZ00462 637 DH---WMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE-NVLGYEFNGKKV 712 (1004)
T ss_pred cc---ccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee-hHHhhhcCCccc
Confidence 00 0000000000 0 001122334444 221 1 468999999999999999985 688885 89765
Q ss_pred cc-CCCccCCcEEEEEEecccC----CCceEEEEEcCCCCCCCCCCeEEEEe-CCCccCcCcceeEEeecCCchhhhccc
Q 027054 147 HI-TGDVMGGHAVKLIGWGTSD----DGEDYWILANQWNRSWGADGYFKIKR-GSNECGIEEDVVAGLPSSKNLVKEITS 220 (229)
Q Consensus 147 ~~-~~~~~~~Hav~iVGyg~~~----~~~~ywivkNSWG~~WG~~Gy~~i~~-~~n~cgi~~~~~~~~p~~~~~~~~~~~ 220 (229)
.. |+....+|||+|||||++. ++..|||||||||++||++|||||.| +.+.|||.....+++..+..|..+.+.
T Consensus 713 ~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~fn~d~~~~~~~~ 792 (1004)
T PTZ00462 713 QNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIFNIDLPKNKKSP 792 (1004)
T ss_pred cCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeEeeccccccCCc
Confidence 43 5545578999999999531 25789999999999999999999998 789999999999999999999876644
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=5.2e-37 Score=254.44 Aligned_cols=178 Identities=29% Similarity=0.490 Sum_probs=138.1
Q ss_pred hhhchHHHHhccccc-cC--CCCCCCHHHHhhcCCCCC---CCCCCCCChHHHHH-HHHHcCccCCCCccCCCCCCCCCC
Q 027054 3 VTRTNRDALSSSPYV-SL--QNLSLSVNDLLACCGFLC---GDGCDGGYPISAWR-YFVHHGVVTEECDPYFDSTGCSHP 75 (229)
Q Consensus 3 v~~~~~~a~~s~~~~-~~--~~~~lS~Q~l~dC~~~~~---~~gC~Gg~~~~Al~-~~~~~Gi~~e~~~PY~~~~~~~~~ 75 (229)
.+-|++.++|+.+.. +. +.++||+|+|++|..... ..+|.||++..++. +++++|+++|++|||.....
T Consensus 22 wafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~~~~Gi~~e~~~Py~~~~~---- 97 (223)
T cd02619 22 WAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALKGIPPEEDYPYGAESD---- 97 (223)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHcCCCccccCCCCCCCC----
Confidence 355777888887654 33 789999999999997322 37999999999998 89999999999999965411
Q ss_pred CCCCCCCCcccccccccccccccccceeEeeeEE-eC-CcHHHHHHHHHhCCCEEEEEEecCcccccCCceEE------c
Q 027054 76 GCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYK------H 147 (229)
Q Consensus 76 ~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~y~-~~-~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~------~ 147 (229)
.|...|.. ......+++..|. +. .++++||++|+++|||+++|.+..+|..|++|++. .
T Consensus 98 ---------~~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (223)
T cd02619 98 ---------GEEPKSEA----ALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLL 164 (223)
T ss_pred ---------CCCCCCcc----chhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccc
Confidence 11111100 1113456777887 43 45789999999999999999999999999999862 2
Q ss_pred cCCCccCCcEEEEEEecccCC--CceEEEEEcCCCCCCCCCCeEEEEeCCCccC
Q 027054 148 ITGDVMGGHAVKLIGWGTSDD--GEDYWILANQWNRSWGADGYFKIKRGSNECG 199 (229)
Q Consensus 148 ~~~~~~~~Hav~iVGyg~~~~--~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cg 199 (229)
.++...++|||+||||| ++. +++|||||||||++||++||+||+++ +.+.
T Consensus 165 ~~~~~~~~Hav~ivGy~-~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~-~~~~ 216 (223)
T cd02619 165 YEDGDLGGHAVVIVGYD-DNYVEGKGAFIVKNSWGTDWGDNGYGRISYE-DVYE 216 (223)
T ss_pred cCCCccCCeEEEEEeec-CCCCCCCCEEEEEeCCCCccccCCEEEEehh-hhhh
Confidence 23445589999999999 554 78999999999999999999999998 3443
No 15
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=3.2e-37 Score=261.44 Aligned_cols=188 Identities=37% Similarity=0.702 Sum_probs=155.3
Q ss_pred CCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCccCCCCccCCCCCCCCCCCCCCCCC---------Cccccccc
Q 027054 20 QNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP---------TPKCVRKC 90 (229)
Q Consensus 20 ~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~Gi~~e~~~PY~~~~~~~~~~c~~~~~---------~~~~~~~c 90 (229)
.+..||+|+|++|.. ...+||+||.+..|+-||+..|++...||||.....-.++.|..... +..|+..-
T Consensus 256 ~t~~LSpQnLlSC~~-h~q~GC~gG~lDRAWWYlRKrGvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~ 334 (470)
T KOG1544|consen 256 MTPVLSPQNLLSCDT-HQQQGCRGGRLDRAWWYLRKRGVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSY 334 (470)
T ss_pred cccccChHHhcchhh-hhhccCccCcccchheeeecccccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcc
Confidence 668899999999998 56799999999999999999999999999998887777777776554 11233222
Q ss_pred ccccccccccceeEeeeEEeCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCC--------ccCCcEEEEEE
Q 027054 91 VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGD--------VMGGHAVKLIG 162 (229)
Q Consensus 91 ~~~~~~~~~~~~~~i~~y~~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~--------~~~~Hav~iVG 162 (229)
.+.+ ..+...+.|.+.+++++||.+|+++|||.+.|.|.++|+.|++|||+..... ..+.|+|-|.|
T Consensus 335 ~~Sn-----~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tG 409 (470)
T KOG1544|consen 335 VNSN-----DIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITG 409 (470)
T ss_pred cccC-----ceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccceEEEee
Confidence 2221 2234456788889999999999999999999999999999999999865321 34789999999
Q ss_pred ecccC--C--CceEEEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeEEeecCCc
Q 027054 163 WGTSD--D--GEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKN 213 (229)
Q Consensus 163 yg~~~--~--~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~p~~~~ 213 (229)
||++. + ..+||+..||||+.||++|||||-||.|.|.||+.+++|+-.+++
T Consensus 410 WG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgAWGr~~m 464 (470)
T KOG1544|consen 410 WGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGAWGRVGM 464 (470)
T ss_pred cccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhhhhcccc
Confidence 99533 2 358999999999999999999999999999999999999886654
No 16
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=3.5e-36 Score=242.80 Aligned_cols=141 Identities=41% Similarity=0.833 Sum_probs=116.7
Q ss_pred hhchHHHHhcccc-ccCCCCCCCHHHHhhcCCCCCCCCCCCCChHHHHHHHHHc-CccCCCCccCCCCCCCCCCCCCCCC
Q 027054 4 TRTNRDALSSSPY-VSLQNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAY 81 (229)
Q Consensus 4 ~~~~~~a~~s~~~-~~~~~~~lS~Q~l~dC~~~~~~~gC~Gg~~~~Al~~~~~~-Gi~~e~~~PY~~~~~~~~~~c~~~~ 81 (229)
+-|++.++|+... ++++.++||+|+|++|... .+.||+||++..||+|++++ |+++|++|||.
T Consensus 27 Afa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~~~~~~Gi~~e~~~PY~-------------- 91 (174)
T smart00645 27 AFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEYIKKNGGLETESCYPYT-------------- 91 (174)
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHHHHHcCCcccccccCcc--------------
Confidence 3466777777554 4567899999999999973 35699999999999999998 99999999991
Q ss_pred CCcccccccccccccccccceeEeeeEEeCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEcc-CCCccCCcEEEE
Q 027054 82 PTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI-TGDVMGGHAVKL 160 (229)
Q Consensus 82 ~~~~~~~~c~~~~~~~~~~~~~~i~~y~~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~-~~~~~~~Hav~i 160 (229)
. ++.+.+. +|+.|++|||+.. +.....+|+|+|
T Consensus 92 ------------------~---------------------------~~~~~~~-~f~~Y~~Gi~~~~~~~~~~~~Hav~i 125 (174)
T smart00645 92 ------------------G---------------------------SVAIDAS-DFQFYKSGIYDHPGCGSGTLDHAVLI 125 (174)
T ss_pred ------------------c---------------------------EEEEEcc-cccCCcCeEECCCCCCCCcccEEEEE
Confidence 0 4555554 6999999999875 444446999999
Q ss_pred EEecccCCCceEEEEEcCCCCCCCCCCeEEEEeCC-CccCcCccee
Q 027054 161 IGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-NECGIEEDVV 205 (229)
Q Consensus 161 VGyg~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~-n~cgi~~~~~ 205 (229)
||||.+.++++|||||||||++||++|||||.++. |.|+|+....
T Consensus 126 vGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 126 VGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred EEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence 99994338889999999999999999999999998 9999977653
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.6e-19 Score=153.82 Aligned_cols=179 Identities=25% Similarity=0.279 Sum_probs=104.0
Q ss_pred hhhchHHHHhccccccCCCCCCCHHHHhhcCCCCCCCCCC-----CCChHHHHHHHHHc-CccCCCCccCCCCCCCCCCC
Q 027054 3 VTRTNRDALSSSPYVSLQNLSLSVNDLLACCGFLCGDGCD-----GGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPG 76 (229)
Q Consensus 3 v~~~~~~a~~s~~~~~~~~~~lS~Q~l~dC~~~~~~~gC~-----Gg~~~~Al~~~~~~-Gi~~e~~~PY~~~~~~~~~~ 76 (229)
++.++..+||+.+.... .-++|+..+..-.......+|. ||....+.-|+.+. |.+.|..-||..... .
T Consensus 124 waf~t~~sles~l~~~~-~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~a~l~e~sgpv~et~d~y~~~s~----~ 198 (372)
T COG4870 124 WAFATTRSLESYLNPES-AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSAAYLTEWSGPVYETDDPYSENSY----F 198 (372)
T ss_pred Eeeeehhhhhheecccc-cccccccchhhhcCCCccccCCCccccCCccccccccccccCCcchhhcCccccccc----c
Confidence 46788889999887766 5667766665544422233442 56665555566554 788888888854310 0
Q ss_pred CCCCCCCcccccccccccccccccceeEeeeEEeCCcHHHHHHHHHhCCCEEEEEEec-CcccccCCceEEccCCCccCC
Q 027054 77 CEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY-EDFAHYKSGVYKHITGDVMGG 155 (229)
Q Consensus 77 c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~y~~~~~~~~ik~~L~~~gPV~v~~~~~-~~f~~y~~Giy~~~~~~~~~~ 155 (229)
|+...+..+-.+.|. +...... .-+.-.||+++..+|-+...|.+. ..+.....+.+..... ...+
T Consensus 199 ~~~~~p~~k~~~~~~-----------~i~~~~~-~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~~~~~~~~s~-~~~g 265 (372)
T COG4870 199 SPTNLPVTKHVQEAQ-----------IIPSRKK-YLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSG-ENWG 265 (372)
T ss_pred CCcCCchhhccccce-----------ecccchh-hhcccchHHHHhhhccccceeEEecccccccccCCCCCCcc-cccc
Confidence 111000000000000 0101111 112235888888888888666642 1222222233333332 4579
Q ss_pred cEEEEEEecccC---------CCceEEEEEcCCCCCCCCCCeEEEEeCCCccC
Q 027054 156 HAVKLIGWGTSD---------DGEDYWILANQWNRSWGADGYFKIKRGSNECG 199 (229)
Q Consensus 156 Hav~iVGyg~~~---------~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cg 199 (229)
|||+|||||+.. .+.++||||||||++||++|||||+|..-..|
T Consensus 266 HAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~g 318 (372)
T COG4870 266 HAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNG 318 (372)
T ss_pred ceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecccc
Confidence 999999999522 35679999999999999999999999643333
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.68 E-value=6.8e-17 Score=146.28 Aligned_cols=75 Identities=29% Similarity=0.527 Sum_probs=63.3
Q ss_pred HHHHhCCCEEEEEEecCcccccCCceEEcc---------------------CCCccCCcEEEEEEecccCCCc-eEEEEE
Q 027054 119 AEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------------------TGDVMGGHAVKLIGWGTSDDGE-DYWILA 176 (229)
Q Consensus 119 ~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~---------------------~~~~~~~Hav~iVGyg~~~~~~-~ywivk 176 (229)
++|..++||.++..+. .|+.|++||++.. ++....+|||+|||||.+++|+ .||+||
T Consensus 303 ~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~g~p~yw~Vk 381 (437)
T cd00585 303 AQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDEDGKPVKWKVE 381 (437)
T ss_pred HHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCCCCcceEEEE
Confidence 6777899999999996 5779999999653 2233458999999999666676 699999
Q ss_pred cCCCCCCCCCCeEEEEeC
Q 027054 177 NQWNRSWGADGYFKIKRG 194 (229)
Q Consensus 177 NSWG~~WG~~Gy~~i~~~ 194 (229)
||||+.||++||++|+++
T Consensus 382 NSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 382 NSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred cccCCCCCCCcceehhHH
Confidence 999999999999999975
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.97 E-value=2.3e-09 Score=97.54 Aligned_cols=96 Identities=23% Similarity=0.336 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCCEEEEEEecCcccccCCceEEccC---------------------CCccCCcEEEEEEecccCCCc-eE
Q 027054 115 EDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHIT---------------------GDVMGGHAVKLIGWGTSDDGE-DY 172 (229)
Q Consensus 115 ~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~---------------------~~~~~~Hav~iVGyg~~~~~~-~y 172 (229)
+.+...|..+.||-.+-.|.+. ..-+.||.+... .+...+|||+|||.+.+++|+ .+
T Consensus 300 ~~~i~~Lk~G~~VwfgcDV~k~-~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~ 378 (438)
T PF03051_consen 300 DAAIKSLKAGYPVWFGCDVGKF-FDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVR 378 (438)
T ss_dssp HHHHHHHHTT--EEEEEETTTT-EETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEE
T ss_pred HHHHHHHHcCCcEEEeccCCcc-ccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeE
Confidence 3556667779999999999764 455778764321 112347999999999777876 59
Q ss_pred EEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeEEeecCCchh
Q 027054 173 WILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLV 215 (229)
Q Consensus 173 wivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~p~~~~~~ 215 (229)
|+|+||||++.|.+|||.++-. =++.+.+.++...+-.+
T Consensus 379 wkVeNSWG~~~g~kGy~~msd~----wf~e~v~~vvV~K~~lp 417 (438)
T PF03051_consen 379 WKVENSWGTDNGDKGYFYMSDD----WFDEYVYQVVVHKKYLP 417 (438)
T ss_dssp EEEE-SBTTTSTBTTEEEEEHH----HHHHHEEEEEEEGGGS-
T ss_pred EEEEcCCCCCCCCCcEEEECHH----HHHhhhheEEechhhCC
Confidence 9999999999999999999864 34444444444444433
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=97.34 E-value=7.6e-05 Score=65.12 Aligned_cols=40 Identities=30% Similarity=0.611 Sum_probs=34.6
Q ss_pred CCcEEEEEEecccCCCc-eEEEEEcCCCCCCCCCCeEEEEe
Q 027054 154 GGHAVKLIGWGTSDDGE-DYWILANQWNRSWGADGYFKIKR 193 (229)
Q Consensus 154 ~~Hav~iVGyg~~~~~~-~ywivkNSWG~~WG~~Gy~~i~~ 193 (229)
-.|||+|.|.+-+++|. --|.|.||||.+=|.+|||-++-
T Consensus 361 mTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 361 MTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred HHHHHHhhccccccCCCceeeEeecccccccCCCceEeehH
Confidence 46999999999766654 47999999999999999998763
No 21
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.05 E-value=0.033 Score=41.89 Aligned_cols=60 Identities=28% Similarity=0.431 Sum_probs=34.5
Q ss_pred eCCcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEEEecccCCCceEEEEEcCC
Q 027054 110 INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 179 (229)
Q Consensus 110 ~~~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~~~~ywivkNSW 179 (229)
...+.+.|+++|.++.||++.+...-.-. ....+. ...++|.|+|+||+ + .. +++|..+|
T Consensus 85 ~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~--~~~~~~----~~~~~H~vvi~Gy~-~--~~-~~~v~DP~ 144 (144)
T PF13529_consen 85 SDASFDDIKQEIDAGRPVIVSVNSGWRPP--NGDGYD----GTYGGHYVVIIGYD-E--DG-YVYVNDPW 144 (144)
T ss_dssp TTS-HHHHHHHHHTT--EEEEEETTSS----TTEEEE----E-TTEEEEEEEEE--S--SE--EEEE-TT
T ss_pred cCCcHHHHHHHHHCCCcEEEEEEcccccC--CCCCcC----CCcCCEEEEEEEEe-C--CC-EEEEeCCC
Confidence 45567899999999999999997421100 111111 12258999999999 3 23 78887776
No 22
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=93.62 E-value=0.24 Score=41.10 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=38.1
Q ss_pred ccccceeEeeeEEeCCcHHHHHHHHHhCCCEEEEEEecCc---cccc-CC-ceEEccC--CCccCCcEEEEEEec
Q 027054 97 WRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYED---FAHY-KS-GVYKHIT--GDVMGGHAVKLIGWG 164 (229)
Q Consensus 97 ~~~~~~~~i~~y~~~~~~~~ik~~L~~~gPV~v~~~~~~~---f~~y-~~-Giy~~~~--~~~~~~Hav~iVGyg 164 (229)
|..++...+.--...-..++|..+|.++||+++-++...= .-.+ .. ....... .....+|-|+|+||+
T Consensus 96 F~~A~~~gi~V~~rsvs~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd 170 (212)
T PF09778_consen 96 FQKAKAAGINVEKRSVSIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYD 170 (212)
T ss_pred HHHHHHcCCceEEeeccHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeec
Confidence 3334333343333344668999999999988888875310 0001 00 0111111 234468999999999
No 23
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=93.14 E-value=0.42 Score=38.32 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=43.0
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEEEecccCCCceEEEEEcCCCCCCCCCCeEEEE
Q 027054 113 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIK 192 (229)
Q Consensus 113 ~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~~~~ywivkNSWG~~WG~~Gy~~i~ 192 (229)
+.+++++.+-++.|+.+.....++ ......+||++||||-...+|.++.++-|=|= ++++-++
T Consensus 90 s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvGya~~~~g~~~y~~WNPW~-----~~~~~~s 152 (175)
T PF05543_consen 90 SFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVGYAKPNNGQKTYYFWNPWW-----NDVMIQS 152 (175)
T ss_dssp -HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEEEEEETTSEEEEEEE-TT------SS-EEEE
T ss_pred CHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEeeeecCCCCeEEEEeCCcc-----CCcEEEe
Confidence 568899999999999887764221 12233589999999995567799999999884 4555555
Q ss_pred eC
Q 027054 193 RG 194 (229)
Q Consensus 193 ~~ 194 (229)
..
T Consensus 153 a~ 154 (175)
T PF05543_consen 153 AK 154 (175)
T ss_dssp TT
T ss_pred cC
Confidence 44
No 24
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.65 E-value=0.43 Score=38.45 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEEEecccCCCceEEEEEcCCC
Q 027054 112 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWN 180 (229)
Q Consensus 112 ~~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~~~~ywivkNSWG 180 (229)
.++..||..|.+++||.+-... |.. ..-|+|+|.||| +.++..-+.||
T Consensus 121 ksl~~ik~ql~kg~PV~iw~T~---~~~-------------~s~H~v~itgyD-----k~n~yynDpyG 168 (195)
T COG4990 121 KSLSDIKGQLLKGRPVVIWVTN---FHS-------------YSIHSVLITGYD-----KYNIYYNDPYG 168 (195)
T ss_pred CcHHHHHHHHhcCCcEEEEEec---ccc-------------cceeeeEeeccc-----ccceEeccccc
Confidence 5688999999999999876654 332 236999999999 77788888885
No 25
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=88.88 E-value=1.5 Score=38.11 Aligned_cols=54 Identities=17% Similarity=0.410 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEEEecccCCCceEEEE
Q 027054 114 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWIL 175 (229)
Q Consensus 114 ~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~~~~ywiv 175 (229)
.+.|++.|.++.||.+.+..+ +.-|...-| ......|.|+|+||+ ++ +..+.++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~--~lpy~~~~~----~~~~~~H~i~v~G~d-~~-~~~~~v~ 131 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY--YLPYRPNYY----KKHHADHYIVVYGYD-EE-EDVFYVS 131 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc--cCCCCcccc----ccccCCcEEEEEEEe-CC-CCEEEEE
Confidence 568999998888999997652 222221111 233358999999999 32 3445555
No 26
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=86.22 E-value=0.055 Score=47.56 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=41.6
Q ss_pred CCcEEEEEEecc-cC--CCceEEEEEcCCCCCCCCCCeEEEEeCCCccCcCcceeEEeecCCchhhhc
Q 027054 154 GGHAVKLIGWGT-SD--DGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 218 (229)
Q Consensus 154 ~~Hav~iVGyg~-~~--~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~p~~~~~~~~~ 218 (229)
-.||+++.|-+. ++ .+-.-|.|.||||++-|.+|+.++... -.+.++...+...+..+.++
T Consensus 371 mthAml~T~v~~kd~~~g~~~~~rVenswgkd~gkkg~~~mt~e----wf~EY~feiVVd~k~vP~ev 434 (457)
T KOG4128|consen 371 MTHAMLLTSVGLKDPATGGLNEHRVENSWGKDLGKKGVNKMTAE----WFREYAFEIVVDEKFVPSEV 434 (457)
T ss_pred HHHHHHhhhccccCcccCCchhhhhhchhhhhccccchhhhhHH----HHHhhheeEEeecccCcHHH
Confidence 369999999882 21 234569999999999999999777543 34445555555555544443
No 27
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=82.24 E-value=5.4 Score=29.83 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=30.4
Q ss_pred HHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEEEecccCCCceEEEEEcCC
Q 027054 117 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 179 (229)
Q Consensus 117 ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~~~~ywivkNSW 179 (229)
+++.|.+..||++.+... + .....+|.|+|+||+ . .. ..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--~------------~~~~~gH~vVv~g~~-~--~~-~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--V------------SITPSGHAMVVIGYD-R--KG-NVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--c------------ccCCCCeEEEEEEEc-C--CC-CEEEECCC
Confidence 888898999999988751 0 111247999999998 2 22 24455554
No 28
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=81.88 E-value=7.5 Score=31.59 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEEEecccCCCceEEEEEcCCCCCCCCCCeEE
Q 027054 114 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFK 190 (229)
Q Consensus 114 ~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg~~~~~~~ywivkNSWG~~WG~~Gy~~ 190 (229)
.+.|+..|.++.||...-..... +||.+|-||. ...|+-+-=.||-. .+|||+
T Consensus 140 ~~~i~~el~~~rPV~~~g~~~~~------------------GHawViDGy~----~~~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGNSKSG------------------GHAWVIDGYD----SDGYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHHTT--EEEEEEETTE------------------EEEEEEEEEE----SSSEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCCC------------------CeEEEEcCcc----CCCeEEEeeCccCC--CCCccC
Confidence 35789999999999766443111 7999999997 24577765555533 678875
No 29
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=79.26 E-value=5.8 Score=31.44 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=28.0
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCcccccCCceEEccCCCccCCcEEEEEEec
Q 027054 113 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWG 164 (229)
Q Consensus 113 ~~~~ik~~L~~~gPV~v~~~~~~~f~~y~~Giy~~~~~~~~~~Hav~iVGyg 164 (229)
+.+.++..|.++||+-++.... ++....|+++|.|-+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P---------------~~~~~~H~~ViTGI~ 133 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP---------------GDSWVAHASVITGID 133 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CCcceeeEEEEEeec
Confidence 4588999999999999985542 122235999999988
No 30
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=77.01 E-value=7.6 Score=33.99 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.3
Q ss_pred CCcEEEEEEecccCC--CceEEEEEcCCCC
Q 027054 154 GGHAVKLIGWGTSDD--GEDYWILANQWNR 181 (229)
Q Consensus 154 ~~Hav~iVGyg~~~~--~~~ywivkNSWG~ 181 (229)
.+||-.|++.- +.+ +.+...+||-||.
T Consensus 235 ~~HaY~Vl~~~-~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVR-EVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEE-EEccCceEEEEecCCccC
Confidence 58999999998 444 7899999999994
No 31
>KOG4621 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.07 E-value=58 Score=24.97 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=36.8
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCcc----cc--cCCceEEccC------CCccCCcEEEEEEecccCCCceEEEEEc
Q 027054 113 DPEDIMAEIYKNGPVEVSFTVYEDF----AH--YKSGVYKHIT------GDVMGGHAVKLIGWGTSDDGEDYWILAN 177 (229)
Q Consensus 113 ~~~~ik~~L~~~gPV~v~~~~~~~f----~~--y~~Giy~~~~------~~~~~~Hav~iVGyg~~~~~~~ywivkN 177 (229)
.+.+|..+|+++--|++.+.-...+ -. .+++.+.+.. ..-..+|-|+|-||+ ...+-+.++|
T Consensus 58 Si~dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd---~a~~c~~~nd 131 (167)
T KOG4621|consen 58 SIHDIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYD---AARDCFEIND 131 (167)
T ss_pred eHHHHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhccCCCCccccccCCcccccEEEEeccc---cccCeEEEcC
Confidence 4578999998876777766532221 11 1233333221 123468999999999 4445555555
No 32
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=37.02 E-value=1.1e+02 Score=26.77 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=21.5
Q ss_pred CCcEEEEEEecccCCCce--EEEEEcCCCC
Q 027054 154 GGHAVKLIGWGTSDDGED--YWILANQWNR 181 (229)
Q Consensus 154 ~~Hav~iVGyg~~~~~~~--ywivkNSWG~ 181 (229)
.+||-.|++.. ..++.+ -..+||-||.
T Consensus 227 ~~HaYsVl~v~-~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVR-EVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEE-EEecCCeEEEEEECCCCC
Confidence 58999999988 444445 8999999993
No 33
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=28.50 E-value=30 Score=32.05 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=44.3
Q ss_pred chHHHHhcccc--ccCCCCCCCHHHHhhcCC------------------C--------CCCCCCCCCChHHHHHHHHHcC
Q 027054 6 TNRDALSSSPY--VSLQNLSLSVNDLLACCG------------------F--------LCGDGCDGGYPISAWRYFVHHG 57 (229)
Q Consensus 6 ~~~~a~~s~~~--~~~~~~~lS~Q~l~dC~~------------------~--------~~~~gC~Gg~~~~Al~~~~~~G 57 (229)
|+...+++-.. ...+.+.||+.+|+--+. . ....-.+||.-..++..++.+|
T Consensus 70 A~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~DGGqw~m~~~li~KYG 149 (437)
T cd00585 70 AALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQNDGGQWDMLVNLIEKYG 149 (437)
T ss_pred HCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCCCCchHHHHHHHHHcC
Confidence 45555665333 345789999988877211 0 0234568999999999999999
Q ss_pred ccCCCCccCC
Q 027054 58 VVTEECDPYF 67 (229)
Q Consensus 58 i~~e~~~PY~ 67 (229)
++..+.||-.
T Consensus 150 vVPk~~~pet 159 (437)
T cd00585 150 LVPKSVMPES 159 (437)
T ss_pred CCcccccCCC
Confidence 9999999963
No 34
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=24.80 E-value=2.1e+02 Score=24.54 Aligned_cols=28 Identities=25% Similarity=0.480 Sum_probs=19.3
Q ss_pred CCcEEEEEEecccC---CCceEEEEEcCCCC
Q 027054 154 GGHAVKLIGWGTSD---DGEDYWILANQWNR 181 (229)
Q Consensus 154 ~~Hav~iVGyg~~~---~~~~ywivkNSWG~ 181 (229)
.+||-.|++..... +......+||-||.
T Consensus 213 ~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 213 PGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp TTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred cceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 58999999988321 12567889999994
No 35
>PLN00115 pollen allergen group 3; Provisional
Probab=22.35 E-value=53 Score=24.67 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=17.4
Q ss_pred cEEEEEEecccCCCceEEE--EEcCCCCCCC
Q 027054 156 HAVKLIGWGTSDDGEDYWI--LANQWNRSWG 184 (229)
Q Consensus 156 Hav~iVGyg~~~~~~~ywi--vkNSWG~~WG 184 (229)
++|.|=+-| ..-|+ ++.|||..|-
T Consensus 48 ~~V~Ik~~g-----~~~W~~~M~rswGavW~ 73 (118)
T PLN00115 48 SEVEIKEKG-----AKDWVDDLKESSTNTWT 73 (118)
T ss_pred EEEEEeecC-----CCcccCccccCccceeE
Confidence 555554433 45698 9999999996
No 36
>PF15528 Toxin_48: Putative toxin 48
Probab=21.67 E-value=45 Score=27.14 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=34.9
Q ss_pred EEEEecccCCCceEEEEEcCCCCCC----CCCCeEEEEe-CCCccCcCcceeEEeecCCchhhhccccc
Q 027054 159 KLIGWGTSDDGEDYWILANQWNRSW----GADGYFKIKR-GSNECGIEEDVVAGLPSSKNLVKEITSAD 222 (229)
Q Consensus 159 ~iVGyg~~~~~~~ywivkNSWG~~W----G~~Gy~~i~~-~~n~cgi~~~~~~~~p~~~~~~~~~~~~~ 222 (229)
.-+||| +..|+.+++||..| +.=||+...+ +. +-.++.++.+-....-...+.--|
T Consensus 29 ~~~G~g-----k~~~~~~~~~~~g~~~~~~~~gy~~~~y~~~---~~tsQ~tG~i~~~~g~f~l~~END 89 (189)
T PF15528_consen 29 NYFGWG-----KSAWEQRKGWGAGFSKRFGQTGYSYSTYMDN---GKTSQRTGSIGFQFGDFSLRYEND 89 (189)
T ss_pred cccccC-----ccchhhhhhhcccccccCCceeEEEEEEecc---ccceeeeeEEEEecCcEEEEEeec
Confidence 446888 88999999999999 8888885544 21 333444444444443333333333
No 37
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=21.23 E-value=53 Score=28.96 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=18.4
Q ss_pred CCCCCCCCeEEEEeCCCccCcCcc
Q 027054 180 NRSWGADGYFKIKRGSNECGIEED 203 (229)
Q Consensus 180 G~~WG~~Gy~~i~~~~n~cgi~~~ 203 (229)
+..|+.+||++++...+.|.++.-
T Consensus 62 e~kwSRKGfmrtrw~i~~t~fdfV 85 (356)
T PTZ00312 62 GAGRSRKGFLLLSLRLGTVVVNVL 85 (356)
T ss_pred CCCccccceEEEEEEECCEEEEEE
Confidence 458999999999997666665443
No 38
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=20.97 E-value=55 Score=24.44 Aligned_cols=13 Identities=46% Similarity=0.775 Sum_probs=10.6
Q ss_pred EEEEcCC-CCCCCC
Q 027054 173 WILANQW-NRSWGA 185 (229)
Q Consensus 173 wivkNSW-G~~WG~ 185 (229)
-||+||+ +..||.
T Consensus 51 ~iV~Ns~~~g~Wg~ 64 (128)
T smart00276 51 KIVCNSKLNGSWGS 64 (128)
T ss_pred EEEEeCccCCccch
Confidence 5899998 668994
Done!