BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027057
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GR9|A Chain A, Crystal Structure Of Cold H188k S187n
pdb|3GR9|B Chain B, Crystal Structure Of Cold H188k S187n
pdb|3GR9|C Chain C, Crystal Structure Of Cold H188k S187n
pdb|3GR9|D Chain D, Crystal Structure Of Cold H188k S187n
pdb|3GR9|E Chain E, Crystal Structure Of Cold H188k S187n
pdb|3GR9|F Chain F, Crystal Structure Of Cold H188k S187n
pdb|3GR9|G Chain G, Crystal Structure Of Cold H188k S187n
pdb|3GR9|H Chain H, Crystal Structure Of Cold H188k S187n
Length = 390
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 128 LRIKVVNLRSNSVNLKVSVDGLGPNSIK--LSGSTKTQLTSSNLKDENSFTEPNKVVPS- 184
LR+K V++ N++N+ + S+K ++ STK LT + L + N+F E NK++
Sbjct: 102 LRVKFVDIDINTLNIDIE-------SLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGR 154
Query: 185 -LTLLENAAKDMDVVISPYSFTSFDLL 210
+ LLE+ + M + +F L+
Sbjct: 155 DIILLEDNCESMGATFNNKCAGTFGLM 181
>pdb|3B8X|A Chain A, Crystal Structure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188n
Mutant With Bound Gdp-Perosamine
pdb|3B8X|B Chain B, Crystal Structure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188n
Mutant With Bound Gdp-Perosamine
Length = 390
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 128 LRIKVVNLRSNSVNLKVSVDGLGPNSIK--LSGSTKTQLTSSNLKDENSFTEPNKVVPS- 184
LR+K V++ N++N+ + S+K ++ STK LT + L + N+F E NK++
Sbjct: 102 LRVKFVDIDINTLNIDIE-------SLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGR 154
Query: 185 -LTLLENAAKDMDVVISPYSFTSFDLL 210
+ LLE+ + M + +F L+
Sbjct: 155 DIILLEDNCESMGATFNNKCAGTFGLM 181
>pdb|2GMS|A Chain A, E Coli Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase With
Bound Hydrated Plp
pdb|2GMS|B Chain B, E Coli Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase With
Bound Hydrated Plp
pdb|2GMU|A Chain A, Crystal Structure Of E Coli
Gdp-4-Keto-6-Deoxy-D-Mannose-3- Dehydratase Complexed
With Plp-Glutamate Ketimine Intermediate
pdb|2GMU|B Chain B, Crystal Structure Of E Coli
Gdp-4-Keto-6-Deoxy-D-Mannose-3- Dehydratase Complexed
With Plp-Glutamate Ketimine Intermediate
Length = 390
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 128 LRIKVVNLRSNSVNLKVSVDGLGPNSIK--LSGSTKTQLTSSNLKDENSFTEPNKVVPS- 184
LR+K V++ N++N+ + S+K ++ STK LT + L + N+F E NK++
Sbjct: 102 LRVKFVDIDINTLNIDIE-------SLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGR 154
Query: 185 -LTLLENAAKDMDVVISPYSFTSFDLL 210
+ LLE+ + M + +F L+
Sbjct: 155 DIILLEDNCESMGATFNNKCAGTFGLM 181
>pdb|2R0T|A Chain A, Crystal Sructure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase With A Trapped
Plp-Glutamate Geminal Diamine
pdb|2R0T|B Chain B, Crystal Sructure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase With A Trapped
Plp-Glutamate Geminal Diamine
Length = 390
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 128 LRIKVVNLRSNSVNLKVSVDGLGPNSIK--LSGSTKTQLTSSNLKDENSFTEPNKVVPS- 184
LR+K V++ N++N+ + S+K ++ STK LT + L + N+F E NK++
Sbjct: 102 LRVKFVDIDINTLNIDIE-------SLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGR 154
Query: 185 -LTLLENAAKDMDVVISPYSFTSFDLL 210
+ LLE+ + M + +F L+
Sbjct: 155 DIILLEDNCESMGATFNNKCAGTFGLM 181
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 132 VVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDEN 173
++ LR N VNL GP +K+SG T +L+ L+ +N
Sbjct: 397 LLKLRPNGVNLN------GPPKLKMSGLTYLRLSDDLLQTDN 432
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 26.9 bits (58), Expect = 8.9, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 128 LRIKVVN---LRSNSVNLKVSVDGLG-PNSIKLSGSTKTQLTSS--NLKDENSFTEPNKV 181
LR+KV++ L V + V VD G P + T+T +S + DE F P V
Sbjct: 729 LRVKVISGQFLSDRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVV 788
Query: 182 VPSLTLLENAA 192
+P+L L AA
Sbjct: 789 LPTLASLRIAA 799
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,750,965
Number of Sequences: 62578
Number of extensions: 141306
Number of successful extensions: 337
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 9
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)