BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027057
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1
SV=1
Length = 678
Score = 276 bits (705), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/216 (65%), Positives = 173/216 (80%), Gaps = 3/216 (1%)
Query: 11 QAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDA 70
+AFVSEYAV G DAG G+LLA+LAE FLIGLEKNSD+V MASYAPLFVN NDR W PDA
Sbjct: 460 KAFVSEYAVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDA 519
Query: 71 IVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRI 130
IVFNS+ LYGTPSYWVQ+FF ESSGATLL +TL N S+S+VASAISW++ N K ++RI
Sbjct: 520 IVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGN-STSLVASAISWKN--NGKDYIRI 576
Query: 131 KVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLEN 190
K VN +NS N++V V GL PN +++SGS KT LTS+N+ DENSF++P KVVP +LLE
Sbjct: 577 KAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEKVVPHESLLEL 636
Query: 191 AAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFSR 226
A +DM VV+ P+SF+SFDLL+ES ++M +DS S
Sbjct: 637 AEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSSH 672
>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2
SV=1
Length = 674
Score = 238 bits (606), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 161/220 (73%), Gaps = 8/220 (3%)
Query: 11 QAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDA 70
+AFVSEYAV+ DA NGNLLAAL E FL+GLEKNSD+V M SYAPLFVN NDR W PDA
Sbjct: 459 KAFVSEYAVNKADAKNGNLLAALGEAAFLLGLEKNSDIVEMVSYAPLFVNTNDRRWIPDA 518
Query: 71 IVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRI 130
IVFNS+ LYGTPSYWVQ FF ESSGATLLN+T L +SS+ ASAIS++ N K +++I
Sbjct: 519 IVFNSSHLYGTPSYWVQHFFTESSGATLLNST-LKGKTSSVEASAISFQ--TNGKDYIQI 575
Query: 131 KVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLE- 189
K VN SVNLKV+V GL K GS K LTS+++ DENSF+ PN +VP +LLE
Sbjct: 576 KAVNFGEQSVNLKVAVTGL---MAKFYGSKKKVLTSASVMDENSFSNPNMIVPQESLLEM 632
Query: 190 NAAKDMDVVISPYSFTSFDLLRESV-AMKMEGADSFSRSS 228
+D+ V+ P+SF+SFDLL ES +KM +DS+ ++S
Sbjct: 633 TEQEDLMFVLPPHSFSSFDLLTESENVIKMPISDSYKKTS 672
>sp|Q2U790|ABFA_ASPOR Probable alpha-N-arabinofuranosidase A OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=abfA PE=3 SV=2
Length = 629
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 13 FVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIV 72
F+ EY+ ++A + ++AE ++IG+E+NSDVV MA+YAPL N WTP+ I
Sbjct: 446 FIGEYSCQQDNAWP-FMQGSVAEAVYMIGIERNSDVVKMAAYAPLLQLVNSTQWTPNLIA 504
Query: 73 F--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRI 130
F N + + T SY+VQQ F + G T+ N T S + W S +A +
Sbjct: 505 FTQNPSTVIETTSYYVQQMFSVNRGDTIHNVT------SDSAFGPVYWVAS-SADDKYYV 557
Query: 131 KVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLEN 190
K+ N +++ + V++ G +G T L S+ K NS T+ TL+
Sbjct: 558 KLANYGADTQEITVTISG-------KTGGKLTVLADSDPKAFNSDTQ--------TLVTP 602
Query: 191 AAKDMDVVISPYSFT 205
+ DM ++FT
Sbjct: 603 SESDMKATNGKFTFT 617
>sp|Q0CTV2|ABFA_ASPTN Probable alpha-N-arabinofuranosidase A OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=abfA PE=3 SV=1
Length = 628
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Query: 28 NLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVF--NSAQLYGTPSYW 85
N+ ++AE F+IGLE+NSDVV MA+YAPL N WTPD I F N + + SY+
Sbjct: 459 NMQGSVAEAVFMIGLERNSDVVKMAAYAPLLQLVNSTQWTPDLISFTQNPNMVIDSTSYY 518
Query: 86 VQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVS 145
VQQ F + G T+ T S + W S + S+ +K+ N +++ + VS
Sbjct: 519 VQQMFSVNRGDTIKEVT------SDSAFGPVYWVASSSGSSYY-VKLANYGADTQEVSVS 571
Query: 146 VDGL 149
+ G+
Sbjct: 572 IPGM 575
>sp|B8NKA3|ABFA_ASPFN Probable alpha-N-arabinofuranosidase A OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=abfA PE=3 SV=2
Length = 629
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 13 FVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIV 72
F+ EY+ ++A + ++AE ++IG+E+NSDVV MA+YAPL N WTP+ I
Sbjct: 446 FIGEYSCQQDNAWP-FMQGSVAEAVYMIGIERNSDVVKMAAYAPLLQLVNSTQWTPNLIA 504
Query: 73 F--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRI 130
F N + + T SY+VQQ F + G T+ N T S + W S +A +
Sbjct: 505 FTQNPSTVIETTSYYVQQMFSVNRGDTIHNVT------SDSAFGPVYWVAS-SADDKYYV 557
Query: 131 KVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLEN 190
K+ N +++ + V++ G +G T L S+ K NS T+ TL+
Sbjct: 558 KLANYGADTQEITVTISG-------KTGGKLTVLADSDPKAFNSDTQ--------TLVTP 602
Query: 191 AAKDMDVVISPYSFT 205
+ D+ ++FT
Sbjct: 603 SESDVKATNGKFTFT 617
>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1
SV=1
Length = 628
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 28 NLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNS--AQLYGTPSYW 85
N+ ++AE F+IG E+NSDVV MA+YAPL N WTPD I + ++ + SY+
Sbjct: 459 NMKGSVAEAVFMIGFERNSDVVKMAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYY 518
Query: 86 VQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVS 145
VQ+ F + G T+ T S S + W S S+ +K+ N S + +L VS
Sbjct: 519 VQEMFSRNRGDTIKEVT----SDSDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVS 571
Query: 146 VDG 148
+ G
Sbjct: 572 IPG 574
>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1
Length = 628
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 28 NLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNS--AQLYGTPSYW 85
N+ ++AE F+IG E+NSDVV MA+YAPL N WTPD I + ++ + SY+
Sbjct: 459 NMKGSVAEAVFMIGFERNSDVVKMAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYY 518
Query: 86 VQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVS 145
VQ+ F + G T+ T S S + W S S+ +K+ N S + +L VS
Sbjct: 519 VQEMFSRNRGDTIKEVT----SDSDF--GPLYWVASSAGDSYY-MKLANYGSETQDLTVS 571
Query: 146 VDG 148
+ G
Sbjct: 572 IPG 574
>sp|Q96X54|ABFA_ASPAW Probable alpha-N-arabinofuranosidase A OS=Aspergillus awamori
GN=abfA PE=1 SV=1
Length = 628
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 28 NLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSA--QLYGTPSYW 85
N+ +++E F+IG E+NSDVV MA+YAPL N WTPD I + + ++ + SY+
Sbjct: 459 NMKGSVSEAVFMIGFERNSDVVKMAAYAPLLQLVNSTQWTPDLIGYTQSPDDIFLSTSYY 518
Query: 86 VQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVS 145
VQ+ F + G T+ T S S + W S S+ +K+ N S + +L VS
Sbjct: 519 VQEMFSRNRGDTIKEVT----SDSDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVS 571
Query: 146 VDG 148
+ G
Sbjct: 572 IPG 574
>sp|Q8NK90|ABFA_ASPKW Alpha-N-arabinofuranosidase A OS=Aspergillus kawachii (strain NBRC
4308) GN=abfA PE=1 SV=2
Length = 628
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 28 NLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSA--QLYGTPSYW 85
N+ +++E F+IG E+NSDVV MA+YAPL N WTPD I + + ++ + SY+
Sbjct: 459 NMKGSVSEAVFMIGFERNSDVVKMAAYAPLLQLVNSTQWTPDLIGYTQSPDDIFLSTSYY 518
Query: 86 VQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVS 145
VQ+ F + G T+ T S S + W S S+ +K+ N S + +L VS
Sbjct: 519 VQEMFSRNRGDTIKEVT----SDSDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVS 571
Query: 146 VDG 148
+ G
Sbjct: 572 IPG 574
>sp|P82593|ABF1_STRCX Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1
Length = 825
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 11 QAFVSEYAVHGNDAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDA 70
+ F+ EYA GN NG L+E F+ GLE+N+DVV +ASYAPL N + W PD
Sbjct: 462 KVFLGEYASQGNAWKNG-----LSEAAFMTGLERNADVVKLASYAPLLANEDYVQWRPDL 516
Query: 71 IVFNSAQLYGTPSYWVQQFFRESSGATLL--NATLLTNSSSSIVAS 114
+ FN+ + + +Y VQ+ F + G ++ AT + S I +
Sbjct: 517 VWFNNRASWNSANYEVQKLFMNNVGDRVVPSKATTTPDVSGPITGA 562
>sp|Q5BA89|ABFA_EMENI Probable alpha-N-arabinofuranosidase A OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=abfA PE=3 SV=1
Length = 565
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 44/221 (19%)
Query: 11 QAFVSEYAVHGNDAGNGN----LLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWW 66
+ V EY + +G + + AE +IGLE+NSDVV MA+YAPL + W
Sbjct: 352 RVLVGEYGCRNDSNPDGVFWSFMQGSCAEAVHMIGLERNSDVVMMAAYAPLLQHFGYTQW 411
Query: 67 ---TPDAIVF-----------NSAQLYG----------TPSYWVQQFFRESSGATLLNAT 102
TP A + L+G + SY+V + F + G+T+
Sbjct: 412 SVCTPSASLAYLGIHPADRGEEQPTLFGFESRPNSLTLSTSYYVNRMFSTNQGSTVHKV- 470
Query: 103 LLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKT 162
S+ + W + N ++ ++K+ N + + + + V G+G +++
Sbjct: 471 -----HSTAGFGPLYWVATSNETAY-QVKLANYGAANQTVNIRVPGVGRGVLEM------ 518
Query: 163 QLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYS 203
S KD ++ K+VP + + V + P+
Sbjct: 519 ---ISGPKDASNLPGDIKIVPVSRNIRAGKEGYTVHMPPWG 556
>sp|Q59219|ABF2_BACOV Alpha-N-arabinofuranosidase 2 OS=Bacteroides ovatus GN=asdII PE=3
SV=1
Length = 514
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 71 IVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSS---SIVASAISWEDSENAKSF 127
I+ ++ TP+Y+V + ++ AT L L S + +S S+N
Sbjct: 375 ILTKDKEMVLTPTYYVFKMYKVHQDATYLPIDLTCEKMSVRDNRTVPMVSATASKNKDGV 434
Query: 128 LRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPS 184
+ I + N+ ++ +++++ LG K + LT+S L D NSF +PN V P+
Sbjct: 435 IHISLSNVDADEAQ-EITIN-LG--DTKAKKAIGEILTASKLTDYNSFEKPNIVKPA 487
>sp|C5DL76|AIM3_LACTC Altered inheritance of mitochondria protein 3 OS=Lachancea
thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL
Y-8284) GN=AIM3 PE=3 SV=1
Length = 842
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 88 QFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNL 135
Q F E +G + + L + +S+ SW+DSE K LRIK+ N+
Sbjct: 345 QPFPEENGVSDVQE--LKSPTSATTVKPYSWKDSEELKESLRIKIQNV 390
>sp|Q6GKT9|GYRA_STAAR DNA gyrase subunit A OS=Staphylococcus aureus (strain MRSA252)
GN=gyrA PE=3 SV=1
Length = 886
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N I+++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEIISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|P15753|GSPN_KLEPN Type II secretion system protein N OS=Klebsiella pneumoniae GN=pulN
PE=3 SV=1
Length = 252
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 97 TLLNATLLTNSSSSIVASAISWEDS--ENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSI 154
TL A+ N I ASA+ W+D+ + L + VN + + L +S
Sbjct: 131 TLPEASFNANGCRRIAASAVQWQDAALSSPAGLLELAQVNGKLSCTPAGALAVALTQDSH 190
Query: 155 KLSGSTKTQLTSSNLKDENSFTEPNKVVPS-LTLL--ENAAKDMDVVISPYSF 204
+LS + + LT N +P + P+ LTLL +N KD I P+ +
Sbjct: 191 QLSLTGQGVLTPDGRYTFNGTLQPRQAAPALLTLLVAQNGRKDEQGRI-PWRW 242
>sp|P20831|GYRA_STAAU DNA gyrase subunit A OS=Staphylococcus aureus GN=gyrA PE=1 SV=3
Length = 889
Score = 31.6 bits (70), Expect = 5.2, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|Q932M0|GYRA_STAAM DNA gyrase subunit A OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrA PE=1 SV=1
Length = 889
Score = 31.6 bits (70), Expect = 5.2, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|Q99XG5|GYRA_STAAN DNA gyrase subunit A OS=Staphylococcus aureus (strain N315) GN=gyrA
PE=1 SV=1
Length = 889
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|Q2FKQ0|GYRA_STAA3 DNA gyrase subunit A OS=Staphylococcus aureus (strain USA300)
GN=gyrA PE=3 SV=1
Length = 887
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|Q5HJZ0|GYRA_STAAC DNA gyrase subunit A OS=Staphylococcus aureus (strain COL) GN=gyrA
PE=3 SV=1
Length = 887
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|Q8NKW8|GYRA_STAAW DNA gyrase subunit A OS=Staphylococcus aureus (strain MW2) GN=gyrA
PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|Q6GD84|GYRA_STAAS DNA gyrase subunit A OS=Staphylococcus aureus (strain MSSA476)
GN=gyrA PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|Q2G2Q0|GYRA_STAA8 DNA gyrase subunit A OS=Staphylococcus aureus (strain NCTC 8325)
GN=gyrA PE=1 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 67 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 124
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 125 KSFL 128
+FL
Sbjct: 612 DNFL 615
>sp|Q97LQ9|THIE_CLOAB Thiamine-phosphate synthase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=thiE PE=3 SV=1
Length = 211
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 77 QLYGTPSYWVQQFFR-ESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNL 135
++ G ++ +++ E +GAT L + N+S+ A A+S E+ +N K+ ++I VV +
Sbjct: 104 KIIGVSAHSIEEALEAERNGATYLGVGAIYNTSTKGDAQAVSLEELKNIKNSVKIPVVGI 163
Query: 136 ------RSNSVNLKVSVDGL 149
+N V ++ VDG+
Sbjct: 164 GGINEENANKV-IETGVDGI 182
>sp|F0XS04|DAPB_GROCL Probable dipeptidyl-aminopeptidase B OS=Grosmannia clavigera
(strain kw1407 / UAMH 11150) GN=DAPB PE=3 SV=1
Length = 975
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 65 WWTPDA--IVFNSAQLYGTPSYWVQQFFRESSGA 96
WW+PD I F G P Y VQ F SGA
Sbjct: 383 WWSPDGRYIAFLRTNETGVPEYPVQYFLHRPSGA 416
>sp|O70514|FGFP1_MOUSE Fibroblast growth factor-binding protein 1 OS=Mus musculus
GN=Fgfbp1 PE=1 SV=1
Length = 251
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 121 SENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNL--KDENSF--- 175
NAKS L+ +V R NLK+ + PN+ G+TK + + + ++ N
Sbjct: 133 CRNAKSVLKTRVCRKRFPESNLKL----VNPNA---RGNTKPRKEKAEVSAREHNKVQEA 185
Query: 176 --TEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLL 210
TEPN+V +TL A + M + P D+L
Sbjct: 186 VSTEPNRVKEDITLNPAATQTM-AIRDPECLEDPDVL 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,391,475
Number of Sequences: 539616
Number of extensions: 2866221
Number of successful extensions: 6389
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6348
Number of HSP's gapped (non-prelim): 52
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)