Query 027057
Match_columns 229
No_of_seqs 109 out of 765
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06964 Alpha-L-AF_C: Alpha-L 100.0 6.4E-50 1.4E-54 331.2 20.5 172 15-203 1-177 (177)
2 smart00813 Alpha-L-AF_C Alpha- 100.0 1.1E-45 2.4E-50 309.2 20.4 175 15-203 1-189 (189)
3 COG3534 AbfA Alpha-L-arabinofu 100.0 2.8E-38 6.2E-43 287.6 15.4 193 6-212 282-501 (501)
4 PF02055 Glyco_hydro_30: O-Gly 97.4 0.018 3.9E-07 55.2 18.0 132 11-149 331-474 (496)
5 PF02806 Alpha-amylase_C: Alph 91.6 1.7 3.6E-05 31.6 8.2 70 128-210 23-94 (95)
6 PF01229 Glyco_hydro_39: Glyco 91.5 6.6 0.00014 37.4 14.1 178 9-211 274-485 (486)
7 KOG2566 Beta-glucocerebrosidas 90.0 3.2 7E-05 38.8 9.9 128 6-139 350-488 (518)
8 COG5520 O-Glycosyl hydrolase [ 81.8 8.2 0.00018 35.8 8.1 106 85-213 327-432 (433)
9 PLN02808 alpha-galactosidase 80.2 8.2 0.00018 36.0 7.7 66 126-211 320-385 (386)
10 PLN02229 alpha-galactosidase 76.0 16 0.00035 34.6 8.4 68 126-212 353-420 (427)
11 PLN02692 alpha-galactosidase 74.1 16 0.00035 34.4 7.9 68 126-212 344-411 (412)
12 PF14509 GH97_C: Glycosyl-hydr 66.9 52 0.0011 24.8 10.2 76 127-211 28-103 (103)
13 TIGR02456 treS_nterm trehalose 66.8 17 0.00038 35.1 6.7 59 127-209 480-538 (539)
14 PF11614 FixG_C: IG-like fold 55.0 19 0.00041 27.2 3.8 25 126-150 33-57 (118)
15 PRK12568 glycogen branching en 51.3 78 0.0017 32.1 8.3 75 128-210 653-729 (730)
16 PF11941 DUF3459: Domain of un 41.7 1.2E+02 0.0026 21.2 7.3 17 127-143 43-59 (89)
17 PRK12313 glycogen branching en 41.6 1.5E+02 0.0033 29.3 8.7 22 191-212 609-630 (633)
18 PRK14706 glycogen branching en 37.5 1.9E+02 0.0041 28.9 8.6 74 128-212 547-624 (639)
19 TIGR02455 TreS_stutzeri trehal 36.1 1.6E+02 0.0036 29.6 7.7 63 127-212 622-684 (688)
20 PF06030 DUF916: Bacterial pro 34.5 2.1E+02 0.0046 22.0 7.9 25 126-150 29-53 (121)
21 PRK05402 glycogen branching en 34.0 1.8E+02 0.004 29.3 8.0 73 128-210 648-724 (726)
22 PLN02447 1,4-alpha-glucan-bran 30.7 2.1E+02 0.0045 29.3 7.7 25 188-212 709-733 (758)
23 PF08533 Glyco_hydro_42C: Beta 28.4 52 0.0011 21.7 2.1 17 128-144 13-29 (58)
24 PRK14705 glycogen branching en 28.4 2.5E+02 0.0054 30.4 8.1 74 128-210 1147-1223(1224)
25 PF11182 AlgF: Alginate O-acet 27.7 3.6E+02 0.0078 22.5 7.6 70 126-212 27-96 (181)
26 cd06469 p23_DYX1C1_like p23_li 27.6 1.7E+02 0.0037 19.8 4.8 26 176-201 43-68 (78)
27 PHA03131 dUTPase; Provisional 27.2 1.8E+02 0.0039 26.0 6.0 17 125-141 82-98 (286)
28 PF04113 Gpi16: Gpi16 subunit, 26.4 5.7E+02 0.012 25.2 9.7 104 109-219 357-464 (564)
29 cd06466 p23_CS_SGT1_like p23_l 25.1 2.3E+02 0.005 19.3 5.8 24 178-201 51-74 (84)
30 PLN02960 alpha-amylase 24.7 2.6E+02 0.0056 29.2 7.2 21 190-210 872-892 (897)
31 PF07696 7TMR-DISMED2: 7TMR-DI 21.8 90 0.0019 23.5 2.7 32 128-164 50-81 (141)
No 1
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=100.00 E-value=6.4e-50 Score=331.18 Aligned_cols=172 Identities=40% Similarity=0.629 Sum_probs=146.1
Q ss_pred eccccccCC-----CCCCcHHHHHHHHHHHHHHHhcCCeEeeeccceeecccCCCCCCCceEEecCCeeecCccHHHHHH
Q 027057 15 SEYAVHGND-----AGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQF 89 (229)
Q Consensus 15 gEya~~~~~-----~~~~~l~~AL~~A~~L~~leRnsD~V~mA~~A~l~~~~~~~~W~p~lI~~~~~~~~~tpsYyv~kl 89 (229)
||||+|+.. ...++|++||++|+||++||||||+|+||||||||++++..||+|++|.|+++++|+||+||||||
T Consensus 1 dE~~~~~~~~~~~~~~~~~l~~AL~~A~~l~~~eRnsD~V~ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~l 80 (177)
T PF06964_consen 1 DEWNVWYEEAPPGLEQRYTLRDALAEAAFLNGFERNSDVVKMACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKL 80 (177)
T ss_dssp EEEEE-SCSSSSSS----BHHHHHHHHHHHHHHHHTTTTEEEEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHH
T ss_pred CCcCcccCcCCCcccccCCHHHHHHHHHHHHHHHhCCCEEeEEccchhhccccccccccceEEcCCCCEEECchHHHHHH
Confidence 899998742 126899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCeEEeEEEecCCCCceEEEEEEecccCCCcceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCC
Q 027057 90 FRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNL 169 (229)
Q Consensus 90 ~s~~~g~~~L~~~v~~~~~~~l~~sA~~~~~~~d~~~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~ 169 (229)
|++|.|+++| +.|+++|++++++ ++++|||||+++++++++|+|+|++.. ..+++++|+|+++
T Consensus 81 f~~~~g~~~l---------~~l~~~As~d~~~----~~l~v~vVN~~~~~~~v~l~l~g~~~~----~~a~~~~Ltg~~~ 143 (177)
T PF06964_consen 81 FSNHRGDTVL---------PPLDVSASRDEDG----GELYVKVVNRSSEPQTVTLNLQGFSPA----ATATVTTLTGDDP 143 (177)
T ss_dssp HHHCTTSEEE---------ESEEEEEEEETTT----TEEEEEEEE-SSSBEEEEEEETTSTS-----EEEEEEEEETSST
T ss_pred HHhcCCCeEe---------ccEEEEEEEECCC----CEEEEEEEECCCCCEEEEEEEcCCCCC----ceEEEEEEECCCc
Confidence 9999999999 7999999986532 469999999997799999999998863 7899999999999
Q ss_pred CCCCCCCCCceEeeeeeeEEeeCCeEEEEECCce
Q 027057 170 KDENSFTEPNKVVPSLTLLENAAKDMDVVISPYS 203 (229)
Q Consensus 170 ~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S 203 (229)
.++||+++|++|+|+++.+...++.++++|||||
T Consensus 144 ~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~lp~~S 177 (177)
T PF06964_consen 144 DAENTFENPENVVPVTSTVSAEGGTFTYTLPPYS 177 (177)
T ss_dssp T-B-CSSSTTSSEEEEEEEEEETTEEEEEE-SSE
T ss_pred ccccCCCCCCEEEEEEeeEEecCCEEEEEeCCCC
Confidence 9999999999999999999988999999999998
No 2
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=100.00 E-value=1.1e-45 Score=309.22 Aligned_cols=175 Identities=38% Similarity=0.530 Sum_probs=157.0
Q ss_pred eccccccCC-----CCCCcHHHHHHHHHHHHHHHhcCCeEeeeccceeecccCCCCCCCceEEecCCeeecCccHHHHHH
Q 027057 15 SEYAVHGND-----AGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQF 89 (229)
Q Consensus 15 gEya~~~~~-----~~~~~l~~AL~~A~~L~~leRnsD~V~mA~~A~l~~~~~~~~W~p~lI~~~~~~~~~tpsYyv~kl 89 (229)
|||++|+.. ...++|+|||++|++|++||||||+|+|||||||+|+++ |++|.++++++|+||+||||+|
T Consensus 1 dEw~~w~~~~~~~l~~~~tl~dAL~~A~~l~~~~Rn~D~V~ma~~A~lvn~~~-----p~~i~~~~~~~~~t~~Yyv~~l 75 (189)
T smart00813 1 DEWNVWYDSEPGLLEQQYTLRDALAEAAFLNGLERNSDRVKMASYAQLVNVIN-----PDMLTFNGGQAWRTTTYYVFQL 75 (189)
T ss_pred CCcccCcCCCCccccccCcHHHHHHHHHHHHHHHhccCcEEeehhhhhhcccc-----ceEEEeCCCCEEECCcCHHHHH
Confidence 799999853 136899999999999999999999999999999999975 6788899999999999999999
Q ss_pred HhhcCCCeEEeEEEecCCC-------CceEEEEEEecccCCCcceEEEEEEeCC-CCcEEEEEEEccCCCCcccccceEE
Q 027057 90 FRESSGATLLNATLLTNSS-------SSIVASAISWEDSENAKSFLRIKVVNLR-SNSVNLKVSVDGLGPNSIKLSGSTK 161 (229)
Q Consensus 90 ~s~~~g~~~L~~~v~~~~~-------~~l~~sA~~~~~~~d~~~~l~vkvVN~~-~~~~~v~i~l~g~~~~~~~~~~~~~ 161 (229)
|++|.|+++|++.++++++ +.|+++|+++++ +++++||+||++ +++++++|+|+|+.. ..+++
T Consensus 76 fs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~----~~~~~v~vvN~~~~~~~~~~l~l~g~~~-----~~~~~ 146 (189)
T smart00813 76 FSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDED----GGSLTVKVVNRSPEEAVTVTISLRGLKA-----KSAEG 146 (189)
T ss_pred hhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCC----CCEEEEEEEeCCCCcCEEEEEEecCCcc-----ceEEE
Confidence 9999999999999999864 789999998532 247999999999 668999999999874 56899
Q ss_pred EEEecCCCCCCCCCCCCceEeeeeee-EEeeCCeEEEEECCce
Q 027057 162 TQLTSSNLKDENSFTEPNKVVPSLTL-LENAAKDMDVVISPYS 203 (229)
Q Consensus 162 ~~Lt~~~~~a~Nt~~~P~~V~p~~~~-~~~~~~~~~~~lPp~S 203 (229)
++|+++++++.||+++|++|+|++.. ....++.|+++|||+|
T Consensus 147 ~~l~~~~~~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~~lp~~S 189 (189)
T smart00813 147 TVLTSPDLNAANTFEDPNKVVPVTSTLAAVEGGTLTVTLPPHS 189 (189)
T ss_pred EEEeCCCCccccCCCCCCeeeccccCCceeeCCEEEEEeCCCC
Confidence 99999999999999999999999977 4466789999999998
No 3
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-38 Score=287.56 Aligned_cols=193 Identities=24% Similarity=0.259 Sum_probs=172.7
Q ss_pred cCCCccEEEeccccccCC--------C-----C----CCcHHHHHHHHHHHHHHHhcCCeEeeeccceeecccCCCCCCC
Q 027057 6 HSILLQAFVSEYAVHGND--------A-----G----NGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTP 68 (229)
Q Consensus 6 ~r~~~ki~vgEya~~~~~--------~-----~----~~~l~~AL~~A~~L~~leRnsD~V~mA~~A~l~~~~~~~~W~p 68 (229)
+.+.++|++|||++|+.. | + .+|++|||++|..|+.|.||||+|+|||+|||+|++.+
T Consensus 282 ~kk~v~l~fDEWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~~l~~f~k~sdrV~iAniAQlVNvi~a----- 356 (501)
T COG3534 282 SKKRVGLSFDEWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGSLLNIFHKHSDRVRIANIAQLVNVLAA----- 356 (501)
T ss_pred cccceeEEEecccceeecchhhhccccCCCCCccccccchHHHHHHHHHHHHHHHhhcceeehhHHHHHHHHhhh-----
Confidence 345678999999999742 2 2 48999999999999999999999999999999999986
Q ss_pred ceEEecCCeeecCccHHHHHHHhhcCCCeEEeEEEecCCC--------CceEEEEEEecccCCCcceEEEEEEeCC-CCc
Q 027057 69 DAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS--------SSIVASAISWEDSENAKSFLRIKVVNLR-SNS 139 (229)
Q Consensus 69 ~lI~~~~~~~~~tpsYyv~kl~s~~~g~~~L~~~v~~~~~--------~~l~~sA~~~~~~~d~~~~l~vkvVN~~-~~~ 139 (229)
++...+++.|+||+||||+|++.|.++..|++.+++|+| |.|++||++++++ +.|+||+||++ +++
T Consensus 357 -i~~ekgg~~~~~~~y~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~----~~l~i~vvN~~~~d~ 431 (501)
T COG3534 357 -IMTEKGGPAWLTPIYYPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEG----GELTIFVVNRALEDA 431 (501)
T ss_pred -eeecCCCcceeeehhhhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccC----CeEEEEEEecccccc
Confidence 666678889999999999999999999999999999875 6799999986543 46999999999 677
Q ss_pred EEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeee-EEeeCCeEEEEECCceEEEEEEeec
Q 027057 140 VNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTL-LENAAKDMDVVISPYSFTSFDLLRE 212 (229)
Q Consensus 140 ~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~-~~~~~~~~~~~lPp~S~tvl~l~~~ 212 (229)
..++|+|+|++.+ +.+++++|+|+++++.|||+.|++|+|++.. ..++++.|++.|||+|+.||||+++
T Consensus 432 ~~~~i~l~G~~~a----~~~~~~~lt~~~~~a~Nt~d~p~~V~p~~~~~~~vs~~~l~~~~~~~S~~virl~~~ 501 (501)
T COG3534 432 LKLNISLNGLKKA----KSAEHQVLTGDDLNATNTFDAPENVVPVPGKGATVSKNELTLDLPPLSVSVIRLKLK 501 (501)
T ss_pred ccceEEecccccc----ceeeEEEEecCccccccCCCCCCceecccCCCccccCCceeEecCCceEEEEEEecC
Confidence 9999999999853 7899999999999999999999999999877 6677789999999999999999863
No 4
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.38 E-value=0.018 Score=55.22 Aligned_cols=132 Identities=18% Similarity=0.147 Sum_probs=77.5
Q ss_pred cEEEeccccccC--C--CCCCcHHHHHHHHHHHHHHHhcCCeEeeecccee-ecccCCCCCCCc----eE--EecCCeee
Q 027057 11 QAFVSEYAVHGN--D--AGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPL-FVNANDRWWTPD----AI--VFNSAQLY 79 (229)
Q Consensus 11 ki~vgEya~~~~--~--~~~~~l~~AL~~A~~L~~leRnsD~V~mA~~A~l-~~~~~~~~W~p~----lI--~~~~~~~~ 79 (229)
.|+..|--.-.. + ...+.|..|.-.+-.+++-++|. +..--+.-| +...+++.|..+ .| ..+.+.++
T Consensus 331 ~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~ 408 (496)
T PF02055_consen 331 FLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFY 408 (496)
T ss_dssp EEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT---B--SEEEEGGGTEEE
T ss_pred EEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEE
Confidence 366677543211 1 11356788877777777888886 333333333 233344444422 22 23567899
Q ss_pred cCccHHHHHHHhhcCCCeEEeEEEecCC-CCceEEEEEEecccCCCcceEEEEEEeCCCCcEEEEEEEccC
Q 027057 80 GTPSYWVQQFFRESSGATLLNATLLTNS-SSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGL 149 (229)
Q Consensus 80 ~tpsYyv~kl~s~~~g~~~L~~~v~~~~-~~~l~~sA~~~~~~~d~~~~l~vkvVN~~~~~~~v~i~l~g~ 149 (229)
++|.||.+..||++-..-.+...++... ...|.++|-.+. | +.++|-|.|++++++.++|.+++.
T Consensus 409 ~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nP---D--Gs~vvVv~N~~~~~~~~~v~v~~~ 474 (496)
T PF02055_consen 409 KQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNP---D--GSIVVVVLNRGDSDQNFSVTVKDG 474 (496)
T ss_dssp E-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEET---T--SEEEEEEEE-SSS-EEEEEEEECT
T ss_pred EcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECC---C--CCEEEEEEcCCCCccceEEEEecC
Confidence 9999999999999976555555444332 236888887653 4 457888999998888888888753
No 5
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=91.64 E-value=1.7 Score=31.55 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=38.1
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEE-ecCCCCCCCCC-CCCceEeeeeeeEEeeCCeEEEEECCceEE
Q 027057 128 LRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQL-TSSNLKDENSF-TEPNKVVPSLTLLENAAKDMDVVISPYSFT 205 (229)
Q Consensus 128 l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L-t~~~~~a~Nt~-~~P~~V~p~~~~~~~~~~~~~~~lPp~S~t 205 (229)
.+|.|+|.++++...++.+. .. ..++...+ .+++..-..+. .+...|. ...++.++++|||+|..
T Consensus 23 ~~lvv~Nf~~~~~~~~~~~~-~p------~~g~y~~vlnsd~~~~~g~~~~~~~~v~------~~~~g~~~~~lp~~s~~ 89 (95)
T PF02806_consen 23 RVLVVFNFSPEAVYEDYRIG-VP------EAGRYKEVLNSDDEEYGGSGKGNSGEVT------VDSNGRITVTLPPYSAL 89 (95)
T ss_dssp EEEEEEESSSS-EEEEEEEC-SS------SSEEEEETTTTTCEEEEESSCSETSEEE------EETTSEEEEEESTTEEE
T ss_pred EEEEEEECCCcccceeEEeC-CC------CcceeeEEeCCCccEECCcccccCceEE------EeeCCEEEEEECCCEEE
Confidence 67889999977445555542 22 23444333 33221111110 1111222 22356799999999999
Q ss_pred EEEEe
Q 027057 206 SFDLL 210 (229)
Q Consensus 206 vl~l~ 210 (229)
||+++
T Consensus 90 vl~~~ 94 (95)
T PF02806_consen 90 VLKLK 94 (95)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99986
No 6
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=91.49 E-value=6.6 Score=37.44 Aligned_cols=178 Identities=12% Similarity=0.102 Sum_probs=82.5
Q ss_pred CccEEEeccccccCCCCCCcHHHHHHHHHHHHH-HHhcCCe-EeeeccceeecccC-----CCCCC--CceEEecCCeee
Q 027057 9 LLQAFVSEYAVHGNDAGNGNLLAALAEGGFLIG-LEKNSDV-VAMASYAPLFVNAN-----DRWWT--PDAIVFNSAQLY 79 (229)
Q Consensus 9 ~~ki~vgEya~~~~~~~~~~l~~AL~~A~~L~~-leRnsD~-V~mA~~A~l~~~~~-----~~~W~--p~lI~~~~~~~~ 79 (229)
...+++.||+.... ....+.|.++.|+++.- ++.+.+. +.+.+|-.+.-... ...+. -+|+... -.
T Consensus 274 ~~~~~~tE~n~~~~--~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~---gI 348 (486)
T PF01229_consen 274 NLPLYITEWNASIS--PRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL---GI 348 (486)
T ss_dssp T--EEEEEEES-SS--TT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC---CE
T ss_pred CCceeecccccccC--CCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhccCCCCCceecchhhhhcc---CC
Confidence 34699999998642 23467778888888877 6666653 66666654431111 11111 1344443 36
Q ss_pred cCccHHHHHHHhhcCCCeEEeEEEecCCCCceEEEEEEecccCCCcceEEEEEEeCC-C-C---cEEEEEEEccCCCCcc
Q 027057 80 GTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLR-S-N---SVNLKVSVDGLGPNSI 154 (229)
Q Consensus 80 ~tpsYyv~kl~s~~~g~~~L~~~v~~~~~~~l~~sA~~~~~~~d~~~~l~vkvVN~~-~-~---~~~v~i~l~g~~~~~~ 154 (229)
+-|+||.++++.+. |+.++. ..+ . . ..++ . .+ +.+.|-+=|.. + . ...+.+.++ .+.
T Consensus 349 ~KPa~~A~~~L~~l-g~~~~~-~~~--~--~--~vt~-~---~~--~~~~il~~n~~~~~~~~~~~~~~~~i~-~~~--- 410 (486)
T PF01229_consen 349 PKPAYYAFQLLNKL-GDRLVA-KGD--H--Y--IVTS-K---DD--GSVQILVWNHNDDDTPIPVELILLNIP-NGP--- 410 (486)
T ss_dssp E-HHHHHHHHHTT---SEEEE-EET--T--E--EEEE-----TT--S-EEEEEEE--SSSSSS--EEEEEEEE--SS---
T ss_pred CchHHHHHHHHHhh-CceeEe-cCC--C--c--eeEE-c---CC--CeEEEEEecCcCccCCCcceEEEEecC-CCC---
Confidence 78999999999998 454432 221 1 1 1122 1 12 35777777864 2 1 134444444 221
Q ss_pred cccceEE-EEEecCCCCC------CCCCCCCc---------eEee--eeeeEEeeCC--eEEEEECCceEEEEEEee
Q 027057 155 KLSGSTK-TQLTSSNLKD------ENSFTEPN---------KVVP--SLTLLENAAK--DMDVVISPYSFTSFDLLR 211 (229)
Q Consensus 155 ~~~~~~~-~~Lt~~~~~a------~Nt~~~P~---------~V~p--~~~~~~~~~~--~~~~~lPp~S~tvl~l~~ 211 (229)
+...+ ++|..+.-++ ..++..|+ +=.| +.......++ +++++||++|+..|+|..
T Consensus 411 --~~~~v~~~iD~~hgn~~~~W~~mGsP~~pt~~q~~~Lr~as~p~~~~~~~~~~~G~l~l~~~L~~~~V~li~I~~ 485 (486)
T PF01229_consen 411 --GSVYVTYRIDEEHGNPYDAWKAMGSPQYPTREQIEYLRKASQPELEVPRPVVEDGRLTLKLELPPPSVVLIHICA 485 (486)
T ss_dssp --SEEEEEEEECTTCS-HHHHHHHTT--SS--HHHHHHHHHCSS-EEEEEEEE-BTTEEEEEEEE-TTEEEEEEEEE
T ss_pred --ceEEEEEEECCCCCCHHHHHHHcCCCCCcCHHHHHHHHHhCCCccCceEeecCCCEEEEEEEcCCCeEEEEEEEc
Confidence 22333 4564332111 22333332 0012 1111112334 467899999999999975
No 7
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=89.96 E-value=3.2 Score=38.77 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=71.2
Q ss_pred cCCCccEE-EeccccccC----CCCCCcHHHHHHHHHHHHHHHhcCCeEeeeccceeecccCCCCCCCc-----eEEe-c
Q 027057 6 HSILLQAF-VSEYAVHGN----DAGNGNLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRWWTPD-----AIVF-N 74 (229)
Q Consensus 6 ~r~~~ki~-vgEya~~~~----~~~~~~l~~AL~~A~~L~~leRnsD~V~mA~~A~l~~~~~~~~W~p~-----lI~~-~ 74 (229)
.|++|..| +|-=||-+. ++..++|..|--.|.=+..=+.|- ++.=.-.--.+...+++.|-.+ .|.+ .
T Consensus 350 h~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~-vtGWtdwNl~Ld~~GGP~wv~nfvDspiIv~~t 428 (518)
T KOG2566|consen 350 HRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNH-VTGWTDWNLILDAQGGPNWVSNFVDSPIIVNPT 428 (518)
T ss_pred HhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhh-ccceeeeeeEecCcCCchhHhccCCCceEecHH
Confidence 47778765 354455442 244578888876666554433321 1222222334455567777533 3444 4
Q ss_pred CCeeecCccHHHHHHHhhcCCCeEEeEEEecCCCCceEEEEEEecccCCCcceEEEEEEeCCCCc
Q 027057 75 SAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNS 139 (229)
Q Consensus 75 ~~~~~~tpsYyv~kl~s~~~g~~~L~~~v~~~~~~~l~~sA~~~~~~~d~~~~l~vkvVN~~~~~ 139 (229)
..+.|+||-||++-.||+....-.+++...-..-..|..+|.... || .-+|-+.|+++..
T Consensus 429 ~~~fYKQPmfya~~hFSkFl~pGs~Rv~~~i~~~~~ve~~aflnp---dG--skvvVllnk~s~~ 488 (518)
T KOG2566|consen 429 AQEFYKQPMFYALGHFSKFLPPGSVRVGHSINQNLDVEATAFLNP---DG--SKVVVLLNKNSLD 488 (518)
T ss_pred HHHHhhccHHHHHHHHhhcCCCCceEeeeeeccccccceeEEEcC---CC--cEEEEEeccCCCC
Confidence 556999999999999999987655555444322234555555432 32 2334456655433
No 8
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=81.79 E-value=8.2 Score=35.77 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCeEEeEEEecCCCCceEEEEEEecccCCCcceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEE
Q 027057 85 WVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQL 164 (229)
Q Consensus 85 yv~kl~s~~~g~~~L~~~v~~~~~~~l~~sA~~~~~~~d~~~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L 164 (229)
|.+..|+...+.-++.+.-+...++.+++|+=+ ++ +.++|-..|.+..++.=++.+++.+. + -....+
T Consensus 327 y~ma~fskf~q~gy~rldat~sp~~nvyvsayv----g~--nkvvivaink~~~~vnq~f~fqNpdg-----s-nVs~w~ 394 (433)
T COG5520 327 YCMAHFSKFVQNGYVRLDATKSPYGNVYVSAYV----GP--NKVVIVAINKGTYPVNQSFNFQNPDG-----S-NVSSWV 394 (433)
T ss_pred eeEeeeeeeccCCceEEecccCccceEEEEEEe----cC--CcEEEEeecccccccceeEEEECCCC-----C-eEEEEE
Confidence 444455555555566666666667778888854 12 34777778887666655666666442 2 223334
Q ss_pred ecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEEEEEEeecc
Q 027057 165 TSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRES 213 (229)
Q Consensus 165 t~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~tvl~l~~~~ 213 (229)
+.+.. .+.+. +.+...+++|..+|||.|++-+....+|
T Consensus 395 ns~t~----------n~~~~-sni~~a~~rf~asLPaqsvtTfv~~~ns 432 (433)
T COG5520 395 NSSTL----------NMAKT-SNILAAGGRFNASLPAQSVTTFVWDLNS 432 (433)
T ss_pred eccch----------hhccc-cceeccCceeeeecCcccceeEEEeccC
Confidence 33221 12222 4456678999999999999999887774
No 9
>PLN02808 alpha-galactosidase
Probab=80.21 E-value=8.2 Score=36.04 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=42.2
Q ss_pred ceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEE
Q 027057 126 SFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFT 205 (229)
Q Consensus 126 ~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~t 205 (229)
+...|.+.|++++++++++++..++... ....++.-|.. .-+.. ...+.+++++|||.+.
T Consensus 320 g~~aVal~N~~~~~~~~~~~~~~lgl~~--~~~~~vrDlWs-----~~~~g-------------~~~~~~~~~v~pHg~~ 379 (386)
T PLN02808 320 KRVAVVLWNRGSSRATITARWSDIGLNS--SAVVNARDLWA-----HSTQS-------------SVKGQLSALVESHACK 379 (386)
T ss_pred CCEEEEEEECCCCCEEEEEEHHHhCCCC--CCceEEEECCC-----CCccC-------------cccceEEEEECCceEE
Confidence 3578999999999999999987665420 01223333322 11110 0124588999999999
Q ss_pred EEEEee
Q 027057 206 SFDLLR 211 (229)
Q Consensus 206 vl~l~~ 211 (229)
++++..
T Consensus 380 ~~rlt~ 385 (386)
T PLN02808 380 MYVLTP 385 (386)
T ss_pred EEEEeC
Confidence 999874
No 10
>PLN02229 alpha-galactosidase
Probab=76.04 E-value=16 Score=34.58 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=44.0
Q ss_pred ceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEE
Q 027057 126 SFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFT 205 (229)
Q Consensus 126 ~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~t 205 (229)
+..+|.+.|++++++++++.+.-.+... ....++.-|... -+... ...+.+++++|||.+.
T Consensus 353 g~~aValfN~~~~~~~v~v~~~~lGl~~--~~~~~VrDLW~~-----~dlg~------------~~~~~~~~~v~~Hg~~ 413 (427)
T PLN02229 353 DRLVVALWNRCSEPATITASWDVIGLES--SISVSVRDLWKH-----KDLSE------------NVVGSFGAQVDAHDCH 413 (427)
T ss_pred CCEEEEEEeCCCCCEEEEEEHHHcCCCC--CCceEEEECCCC-----CccCc------------cccceEEEEECCCeEE
Confidence 3578999999999999999988655420 011233333321 11100 0135688999999999
Q ss_pred EEEEeec
Q 027057 206 SFDLLRE 212 (229)
Q Consensus 206 vl~l~~~ 212 (229)
++++...
T Consensus 414 l~rl~~~ 420 (427)
T PLN02229 414 MYIFTPQ 420 (427)
T ss_pred EEEEecc
Confidence 9999774
No 11
>PLN02692 alpha-galactosidase
Probab=74.08 E-value=16 Score=34.36 Aligned_cols=68 Identities=9% Similarity=0.060 Sum_probs=43.6
Q ss_pred ceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEE
Q 027057 126 SFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFT 205 (229)
Q Consensus 126 ~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~t 205 (229)
+...|.+.|+++.+.++++.++.++.. .....++.-|... -+... ...+.+++++|||.+.
T Consensus 344 g~~aVal~N~~~~~~~i~~~~~~lgl~--~~~~~~vrDLW~~-----~~~g~------------~~~~~~~~~v~~Hg~~ 404 (412)
T PLN02692 344 YRVALLLLNRGPWRNSITANWDDIGIP--ANSIVEARDLWEH-----KTLKQ------------HFVGNLTATVDSHACK 404 (412)
T ss_pred CCEEEEEEECCCCCEEEEEeHHHhCCC--CCCceEEEECCCC-----CccCc------------cccceEEEEECCceEE
Confidence 357899999999889888887755532 0012334434321 11110 0235688999999999
Q ss_pred EEEEeec
Q 027057 206 SFDLLRE 212 (229)
Q Consensus 206 vl~l~~~ 212 (229)
++++...
T Consensus 405 l~rl~~~ 411 (412)
T PLN02692 405 MYILKPI 411 (412)
T ss_pred EEEEecC
Confidence 9999765
No 12
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=66.91 E-value=52 Score=24.75 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=44.2
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEEE
Q 027057 127 FLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTS 206 (229)
Q Consensus 127 ~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~tv 206 (229)
.=+|-.+|-.+ +..++|.|+.++.. ..-+.+.++ +..++.. ++|..+..++..+.. ++.+++.|.|..=.+
T Consensus 28 ~Wyvg~in~~~-~r~i~l~L~FL~~g----~~y~a~i~~-D~~~a~~--~~~~~~~~~~~~v~~-~~~l~i~l~~~GG~v 98 (103)
T PF14509_consen 28 DWYVGGINGED-ARTITLPLSFLDKG----KKYTATIYT-DGPDADY--TNPEAYKIETRKVTS-GDKLTITLAPGGGFV 98 (103)
T ss_dssp EEEEEEEE-TT--EEEEEEGCCS-TT------EEEEEEE-E-TTTCT--TCTT-EEEEEEEE-T-T-EEEEEE-TT-EEE
T ss_pred CEEEEEeeCCC-ceEEEEECcccCCC----CcEEEEEEE-eCCcccc--cCCcceEEEEEEECC-CCEEEEEEeCCCcEE
Confidence 57788888653 34588888877641 233444443 3333322 578888777777653 578999999999888
Q ss_pred EEEee
Q 027057 207 FDLLR 211 (229)
Q Consensus 207 l~l~~ 211 (229)
++|.+
T Consensus 99 i~~~p 103 (103)
T PF14509_consen 99 IRITP 103 (103)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88753
No 13
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=66.85 E-value=17 Score=35.07 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=34.5
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEEE
Q 027057 127 FLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTS 206 (229)
Q Consensus 127 ~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~tv 206 (229)
..+|-++|.+++++.++|.+.... +. ...-|-+.+. +. ...++.++++|||+|+.+
T Consensus 480 ~~vlVv~N~s~~~~~v~l~~~~~~------~~-~~~dl~~~~~-----------~~------~~~~~~~~~~l~p~~~~~ 535 (539)
T TIGR02456 480 ERVLCVFNFSRNPQAVELDLSEFA------GR-VPVELIGGAP-----------FP------PVGGDGYLLTLGPHGFYW 535 (539)
T ss_pred cEEEEEEeCCCCCEEeeccccccc------cC-cceecccCCc-----------cc------cccCCcceEEECCceEEE
Confidence 356778899988888777654321 11 1122222111 10 112344789999999999
Q ss_pred EEE
Q 027057 207 FDL 209 (229)
Q Consensus 207 l~l 209 (229)
|++
T Consensus 536 ~~~ 538 (539)
T TIGR02456 536 FRL 538 (539)
T ss_pred EEe
Confidence 985
No 14
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=55.00 E-value=19 Score=27.24 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=19.7
Q ss_pred ceEEEEEEeCCCCcEEEEEEEccCC
Q 027057 126 SFLRIKVVNLRSNSVNLKVSVDGLG 150 (229)
Q Consensus 126 ~~l~vkvVN~~~~~~~v~i~l~g~~ 150 (229)
+.+.++|.|.+.+++.++|.+.|..
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~ 57 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLP 57 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-S
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC
Confidence 4689999999999999999999853
No 15
>PRK12568 glycogen branching enzyme; Provisional
Probab=51.26 E-value=78 Score=32.13 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=40.5
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCcccccceEE-EEEecCCC-CCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEE
Q 027057 128 LRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTK-TQLTSSNL-KDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFT 205 (229)
Q Consensus 128 l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~-~~Lt~~~~-~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~t 205 (229)
-+|.|+|.++.+.. .-.+ |+. ..++. ..|.+++. ..-.-..+...+..+..........++++|||+|+.
T Consensus 653 ~v~vV~Nft~~~~~-~Y~i-g~p------~~G~~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~lppl~~~ 724 (730)
T PRK12568 653 PLLAVSNLTPQPHH-DYRV-GVP------RAGGWREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTLPPLATI 724 (730)
T ss_pred eEEEEECCCCCCcc-CeEE-CCC------CCCeEEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEeCCCEEE
Confidence 45778899865532 2233 332 22333 33444332 111112344445444444444556789999999999
Q ss_pred EEEEe
Q 027057 206 SFDLL 210 (229)
Q Consensus 206 vl~l~ 210 (229)
+|+..
T Consensus 725 ~~~~~ 729 (730)
T PRK12568 725 YLQAE 729 (730)
T ss_pred EEEEC
Confidence 99865
No 16
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=41.68 E-value=1.2e+02 Score=21.17 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=11.8
Q ss_pred eEEEEEEeCCCCcEEEE
Q 027057 127 FLRIKVVNLRSNSVNLK 143 (229)
Q Consensus 127 ~l~vkvVN~~~~~~~v~ 143 (229)
.-.+-++|.+++++++.
T Consensus 43 ~~l~v~~Nls~~~~~~~ 59 (89)
T PF11941_consen 43 ERLLVAFNLSDEPVTVP 59 (89)
T ss_dssp EEEEEEEE-SSS-EEEE
T ss_pred ceEEEEEecCCCcEEcc
Confidence 35677899999888777
No 17
>PRK12313 glycogen branching enzyme; Provisional
Probab=41.57 E-value=1.5e+02 Score=29.29 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=17.7
Q ss_pred eCCeEEEEECCceEEEEEEeec
Q 027057 191 AAKDMDVVISPYSFTSFDLLRE 212 (229)
Q Consensus 191 ~~~~~~~~lPp~S~tvl~l~~~ 212 (229)
....+.+.+||+|..|++.+.+
T Consensus 609 ~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 609 RPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred CCCEEEEEeCCCEEEEEEEccc
Confidence 3456889999999999987654
No 18
>PRK14706 glycogen branching enzyme; Provisional
Probab=37.55 E-value=1.9e+02 Score=28.85 Aligned_cols=74 Identities=14% Similarity=0.244 Sum_probs=39.0
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCcccccceEE-EEEecCCCCC--CCCCCCCceEeeeeeeEEeeCCeEEEEECCce
Q 027057 128 LRIKVVNLRSNS-VNLKVSVDGLGPNSIKLSGSTK-TQLTSSNLKD--ENSFTEPNKVVPSLTLLENAAKDMDVVISPYS 203 (229)
Q Consensus 128 l~vkvVN~~~~~-~~v~i~l~g~~~~~~~~~~~~~-~~Lt~~~~~a--~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S 203 (229)
-+|.|+|.++.. ...+|.++ ..++. .+|.+++..- .+. .++ .+..+..........+.+++||.|
T Consensus 547 ~vlvV~Nfs~~~~~~y~ig~p---------~~g~~~~i~nsd~~~~gG~g~-~n~-~~~~~~~~~~g~~~si~i~lp~~~ 615 (639)
T PRK14706 547 WSLAVANLTPVYREQYRIGVP---------QGGEYRVLLSTDDGEYGGFGT-QQP-DLMASQEGWHGQPHSLSLNLPPSS 615 (639)
T ss_pred eEEEEEeCCCCCcCCeEECCC---------CCCeEEEEEcCCccccCCCCC-CCC-ceeccccccCCCccEEEEEeCCcE
Confidence 468889999643 33444333 22333 3454433211 111 122 232222223333457899999999
Q ss_pred EEEEEEeec
Q 027057 204 FTSFDLLRE 212 (229)
Q Consensus 204 ~tvl~l~~~ 212 (229)
+.|++..+.
T Consensus 616 ~~~~~~~~~ 624 (639)
T PRK14706 616 VLILEFVGD 624 (639)
T ss_pred EEEEEECCC
Confidence 999988654
No 19
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=36.07 E-value=1.6e+02 Score=29.59 Aligned_cols=63 Identities=10% Similarity=0.304 Sum_probs=43.4
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEEE
Q 027057 127 FLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTS 206 (229)
Q Consensus 127 ~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~tv 206 (229)
.+.|.+.|.+.+++.++|++.++.. ..+.-|.++. .+... .+++.+.++|+||.+..
T Consensus 622 ~~~L~v~Nfs~~~~~~~l~l~~~~~-------~~~~dl~~~~-----~~~~~-----------~~~~~~~i~L~~y~~~w 678 (688)
T TIGR02455 622 GIQITALNFGADAIAEEICLPGFAP-------GPVVDIIHES-----VEGDL-----------TDDCELMINLDPYEALA 678 (688)
T ss_pred ceEEEeeccCCCCeeeEEeccccCC-------CCceeccCCC-----ccCCc-----------CCCceeEEEecCcceEE
Confidence 4789999999999999999987642 1333332221 11111 14578999999999999
Q ss_pred EEEeec
Q 027057 207 FDLLRE 212 (229)
Q Consensus 207 l~l~~~ 212 (229)
|+++..
T Consensus 679 l~~~~~ 684 (688)
T TIGR02455 679 LRIVNA 684 (688)
T ss_pred EEeccc
Confidence 988755
No 20
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=34.49 E-value=2.1e+02 Score=21.96 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.0
Q ss_pred ceEEEEEEeCCCCcEEEEEEEccCC
Q 027057 126 SFLRIKVVNLRSNSVNLKVSVDGLG 150 (229)
Q Consensus 126 ~~l~vkvVN~~~~~~~v~i~l~g~~ 150 (229)
..+.|.|-|.+++++++++.+....
T Consensus 29 ~~l~v~i~N~s~~~~tv~v~~~~A~ 53 (121)
T PF06030_consen 29 QTLEVRITNNSDKEITVKVSANTAT 53 (121)
T ss_pred EEEEEEEEeCCCCCEEEEEEEeeeE
Confidence 4699999999999999999987543
No 21
>PRK05402 glycogen branching enzyme; Provisional
Probab=34.02 E-value=1.8e+02 Score=29.30 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=37.8
Q ss_pred EEEEEEeCCCCcE-EEEEEEccCCCCcccccceEE-EEEecCCCC--CCCCCCCCceEeeeeeeEEeeCCeEEEEECCce
Q 027057 128 LRIKVVNLRSNSV-NLKVSVDGLGPNSIKLSGSTK-TQLTSSNLK--DENSFTEPNKVVPSLTLLENAAKDMDVVISPYS 203 (229)
Q Consensus 128 l~vkvVN~~~~~~-~v~i~l~g~~~~~~~~~~~~~-~~Lt~~~~~--a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S 203 (229)
-+|.|+|.++.+. ...|.++. .++. ..|++++.. -.+. .+...+..++.........+.+.|||+|
T Consensus 648 ~vlvv~N~~~~~~~~y~i~~p~---------~g~~~~ilnsd~~~~gg~~~-~~~~~~~~~~~~~~g~~~~~~i~lp~~~ 717 (726)
T PRK05402 648 PLLVVCNFTPVPRHDYRLGVPQ---------AGRWREVLNTDAEHYGGSNV-GNGGGVHAEEVPWHGRPHSLSLTLPPLA 717 (726)
T ss_pred eEEEEEeCCCCcccceEECCCC---------CCeEEEEEcCcchhhCCCCC-CCCCceeccccccCCCCCEEEEEeCCCE
Confidence 4577899996543 44554431 1233 334444321 1121 1222222222222334457899999999
Q ss_pred EEEEEEe
Q 027057 204 FTSFDLL 210 (229)
Q Consensus 204 ~tvl~l~ 210 (229)
..|++..
T Consensus 718 ~~v~~~~ 724 (726)
T PRK05402 718 TLILKPE 724 (726)
T ss_pred EEEEEEc
Confidence 9998764
No 22
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=30.74 E-value=2.1e+02 Score=29.29 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=19.7
Q ss_pred EEeeCCeEEEEECCceEEEEEEeec
Q 027057 188 LENAAKDMDVVISPYSFTSFDLLRE 212 (229)
Q Consensus 188 ~~~~~~~~~~~lPp~S~tvl~l~~~ 212 (229)
.......+.+.+||.|..||+...+
T Consensus 709 ~~~~~~s~~v~iP~~~~~vl~~~~~ 733 (758)
T PLN02447 709 FDNRPHSFMVYAPSRTAVVYAPVDE 733 (758)
T ss_pred cCCCCcEEEEEeCCceEEEEEECCc
Confidence 3344567899999999999998655
No 23
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=28.38 E-value=52 Score=21.66 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=10.5
Q ss_pred EEEEEEeCCCCcEEEEE
Q 027057 128 LRIKVVNLRSNSVNLKV 144 (229)
Q Consensus 128 l~vkvVN~~~~~~~v~i 144 (229)
-++|+.|.+++++.+++
T Consensus 13 ~y~F~~N~s~~~~~v~l 29 (58)
T PF08533_consen 13 RYLFLLNFSDEPQTVTL 29 (58)
T ss_dssp TEEEEEE-SSS-EE---
T ss_pred EEEEEEECCCCCEEEEc
Confidence 46999999999888776
No 24
>PRK14705 glycogen branching enzyme; Provisional
Probab=28.37 E-value=2.5e+02 Score=30.43 Aligned_cols=74 Identities=11% Similarity=0.190 Sum_probs=40.0
Q ss_pred EEEEEEeCCCCcEE-EEEEEccCCCCcccccceEEEEEecCCCC--CCCCCCCCceEeeeeeeEEeeCCeEEEEECCceE
Q 027057 128 LRIKVVNLRSNSVN-LKVSVDGLGPNSIKLSGSTKTQLTSSNLK--DENSFTEPNKVVPSLTLLENAAKDMDVVISPYSF 204 (229)
Q Consensus 128 l~vkvVN~~~~~~~-v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~--a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~ 204 (229)
-+|.|+|.++.+.. .+|.++. ...-...|.+++.. -.| ..+...+..++.........++++|||+|.
T Consensus 1147 ~vlvv~Nftp~~~~~y~igvp~--------~G~y~eilnsd~~~ygGsg-~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~ 1217 (1224)
T PRK14705 1147 PLVCAINFSGGPHKGYTLGVPA--------AGAWTEVLNTDHETYGGSG-VLNPGSLKATTEGQDGQPATLTVTLPPLGA 1217 (1224)
T ss_pred EEEEEEcCCCCCccCceECCCC--------CCeEEEEEeCchhhcCCCC-cCCCCceeecccccCCCCceEEEEecCCEE
Confidence 36778999876554 4443321 11222345444321 112 123334444433334445678999999999
Q ss_pred EEEEEe
Q 027057 205 TSFDLL 210 (229)
Q Consensus 205 tvl~l~ 210 (229)
.+++..
T Consensus 1218 ~~~~~~ 1223 (1224)
T PRK14705 1218 SFFAPA 1223 (1224)
T ss_pred EEEEEC
Confidence 988753
No 25
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=27.70 E-value=3.6e+02 Score=22.48 Aligned_cols=70 Identities=24% Similarity=0.221 Sum_probs=41.7
Q ss_pred ceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceEeeeeeeEEeeCCeEEEEECCceEE
Q 027057 126 SFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFT 205 (229)
Q Consensus 126 ~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~~~~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPp~S~t 205 (229)
+.-.|-++|.+..++.+.++ |.+ ....+....+.+. ..|.+-...+.+++....+++.|.++.
T Consensus 27 ~SAFVRvvN~~~~~~~v~~~--g~~---------~~~~~~~~~~~~~------~~~~~G~~~~~~ggk~~~~~v~~~~f~ 89 (181)
T PF11182_consen 27 GSAFVRVVNASAAPVSVTVS--GSK---------AFQQLAPDQASSY------FFVPPGGYTLQVGGKQAEVDVAPGEFY 89 (181)
T ss_pred CCeEEEEEcCCCCcEEEEEe--cCC---------cccccCCCCccce------eecCCCceeEeecCcccceEecCCceE
Confidence 34678899999888777653 322 1133332222111 122233344667777788888888888
Q ss_pred EEEEeec
Q 027057 206 SFDLLRE 212 (229)
Q Consensus 206 vl~l~~~ 212 (229)
-+.+...
T Consensus 90 TvV~~~~ 96 (181)
T PF11182_consen 90 TVVLRPG 96 (181)
T ss_pred EEEEcCC
Confidence 8777665
No 26
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=27.59 E-value=1.7e+02 Score=19.78 Aligned_cols=26 Identities=0% Similarity=-0.148 Sum_probs=18.0
Q ss_pred CCCceEeeeeeeEEeeCCeEEEEECC
Q 027057 176 TEPNKVVPSLTLLENAAKDMDVVISP 201 (229)
Q Consensus 176 ~~P~~V~p~~~~~~~~~~~~~~~lPp 201 (229)
+=|..|.|........++.+.++||.
T Consensus 43 ~l~~~I~~e~~~~~~~~~~l~i~L~K 68 (78)
T cd06469 43 DLAAPIDDEKSSAKIGNGVLVFTLVK 68 (78)
T ss_pred eCcccccccccEEEEeCCEEEEEEEe
Confidence 44567778877777776777777664
No 27
>PHA03131 dUTPase; Provisional
Probab=27.23 E-value=1.8e+02 Score=26.03 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=12.7
Q ss_pred cceEEEEEEeCCCCcEE
Q 027057 125 KSFLRIKVVNLRSNSVN 141 (229)
Q Consensus 125 ~~~l~vkvVN~~~~~~~ 141 (229)
+|++.|.+.|.++++..
T Consensus 82 rGEI~V~l~N~~~~~~~ 98 (286)
T PHA03131 82 RGELKLILLNKTKYNVT 98 (286)
T ss_pred CcceEEEEEeCCCCCEE
Confidence 36799999999866543
No 28
>PF04113 Gpi16: Gpi16 subunit, GPI transamidase component; InterPro: IPR007245 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins. Gpi16 is an essential N-glycosylated transmembrane glycoprotein. Gpi16 is largely found on the lumenal side of the ER. It has a single C-terminal transmembrane domain and a small C-terminal, cytosolic extension with an ER retrieval motif [].; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=26.42 E-value=5.7e+02 Score=25.20 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=51.3
Q ss_pred CceEEEEEEecccCCCcceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEec----CCCCCCCCCCCCceEeee
Q 027057 109 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTS----SNLKDENSFTEPNKVVPS 184 (229)
Q Consensus 109 ~~l~~sA~~~~~~~d~~~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~Lt~----~~~~a~Nt~~~P~~V~p~ 184 (229)
++|+++-... ..+.++|.|.+.+-|.++.++++.+- +-..-- -....++|.- .......-++. -...|.
T Consensus 357 ppL~a~R~Lt-G~GQerGgl~~~i~N~~~~~v~i~y~-E~lPWf----~r~YlhTL~v~~~~~~~~~~~~i~~-~~y~Pa 429 (564)
T PF04113_consen 357 PPLYASRSLT-GYGQERGGLRTVITNPSDTPVEIVYF-ESLPWF----MRPYLHTLKVEVDGQPKPESDVIKS-IYYSPA 429 (564)
T ss_pred CceEEEEEEc-CCCcCCCeEEEEEECCCCCceEEEEE-Eeccce----eeeeEEEEEEEEecCccccccceee-Eeeccc
Confidence 4566655432 23344678999999999775444332 111100 1233333321 11111111110 012232
Q ss_pred eeeEEeeCCeEEEEECCceEEEEEEeeccccceec
Q 027057 185 LTLLENAAKDMDVVISPYSFTSFDLLRESVAMKME 219 (229)
Q Consensus 185 ~~~~~~~~~~~~~~lPp~S~tvl~l~~~~~~~~~~ 219 (229)
.....-.-=.+.+++||.|...++++-+-+-+|.+
T Consensus 430 ~dr~rp~~lE~~l~lP~~st~~~s~~f~K~~L~~~ 464 (564)
T PF04113_consen 430 KDRKRPTHLELVLTLPPNSTVTLSIDFDKAFLRYT 464 (564)
T ss_pred cccCCCceEEEEEEECCCceEEEEEEEEeeeechh
Confidence 21111011147789999999999998887777654
No 29
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=25.12 E-value=2.3e+02 Score=19.32 Aligned_cols=24 Identities=4% Similarity=0.155 Sum_probs=15.5
Q ss_pred CceEeeeeeeEEeeCCeEEEEECC
Q 027057 178 PNKVVPSLTLLENAAKDMDVVISP 201 (229)
Q Consensus 178 P~~V~p~~~~~~~~~~~~~~~lPp 201 (229)
+..|.|.++.....++.+.+.|+.
T Consensus 51 ~~~I~~~~s~~~~~~~~vei~L~K 74 (84)
T cd06466 51 FGPIDPEQSKVSVLPTKVEITLKK 74 (84)
T ss_pred ccccCchhcEEEEeCeEEEEEEEc
Confidence 346778777777666666665553
No 30
>PLN02960 alpha-amylase
Probab=24.72 E-value=2.6e+02 Score=29.20 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=17.1
Q ss_pred eeCCeEEEEECCceEEEEEEe
Q 027057 190 NAAKDMDVVISPYSFTSFDLL 210 (229)
Q Consensus 190 ~~~~~~~~~lPp~S~tvl~l~ 210 (229)
.....+.++|||+|..|++..
T Consensus 872 g~~~si~i~LPp~sa~v~k~~ 892 (897)
T PLN02960 872 GLRNCLELTLPSRSAQVYKLA 892 (897)
T ss_pred CCCceEEEEeCCCEEEEEEEe
Confidence 444678899999999998874
No 31
>PF07696 7TMR-DISMED2: 7TMR-DISM extracellular 2; InterPro: IPR011622 This entry represents one of two distinct types of extracellular domain found in the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) bacterial transmembrane proteins []. It is possible that this domain adopts a jelly roll fold and acts as a receptor for carbohydrates and their derivatives [].; PDB: 2XBZ_B 3JYB_A.
Probab=21.78 E-value=90 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=13.2
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEE
Q 027057 128 LRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQL 164 (229)
Q Consensus 128 l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L 164 (229)
+.+.|-|.++.....-+.+..... ..++++.+
T Consensus 50 lr~~l~N~~~~~~~~~L~l~~~~l-----d~v~~y~~ 81 (141)
T PF07696_consen 50 LRFTLQNPSSEQRRWVLELDNPYL-----DHVDLYLP 81 (141)
T ss_dssp EEEEE------SS-EEEEEE-TT------SEEEEEEE
T ss_pred EEEEEEeecCCCccEEEEECCCCC-----CEEEEEEE
Confidence 566667776555556666654332 34666666
Done!