BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027058
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium
Thermocellum
pdb|1YBY|B Chain B, Conserved Hypothetical Protein Cth-95 From Clostridium
Thermocellum
Length = 215
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 120/182 (65%)
Query: 47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
S+ D K G E+DG ++V+EF HVKPGKGAAFVRTKL+N ++G T+E+TF +
Sbjct: 33 SAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKXPK 92
Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
A + ++ Q+ Y DG ++ F D TFE++ L + +GD K++KE +L KG +
Sbjct: 93 AHIERKDXQYLYNDGDLYYFXDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFG 152
Query: 167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
E P V+L V D +PG KGDTA+G +KPA ++TGA + VPLFVN GD I +DTRTG+Y
Sbjct: 153 IEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYX 212
Query: 227 TR 228
R
Sbjct: 213 ER 214
>pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|D Chain D, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|F Chain F, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|H Chain H, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 191
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 117/187 (62%)
Query: 42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAG 101
+ + SND + G I +DG P+ V VKPGKG AF R KLR ++GT VE+TF++
Sbjct: 3 HMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKST 62
Query: 102 ITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWK 161
+ E ADV + Y DG + FM+ TFE++ + +GD KWL + +C + W
Sbjct: 63 DSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWN 122
Query: 162 GKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTR 221
G+ I P V+L +VD DPGLKGDTA G KPATL TGAVV VPLFV IG+ I VDTR
Sbjct: 123 GQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTR 182
Query: 222 TGQYMTR 228
+G+Y++R
Sbjct: 183 SGEYVSR 189
>pdb|3TRE|A Chain A, Structure Of A Translation Elongation Factor P (Efp) From
Coxiella Burnetii
Length = 191
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 116/184 (63%)
Query: 46 FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
S+N+ + G + VDG P +++ VKPGKG AF R K RN +G +ERTF++G T+
Sbjct: 7 HSTNEFRGGLKVXVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLP 66
Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
ADV + Q+ Y DG + F +E+ ++ V + K+WLKE C + W G +
Sbjct: 67 AADVVEVEXQYLYNDGEFWHFXTSENYEQHAASKEAVAEAKQWLKEEALCXVTXWNGVPL 126
Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
E P V+L + + +PG++GDTA+GG+K A L+TGAVV VPLF+N G+ I VDTR G+Y
Sbjct: 127 SVEPPNFVELKITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEY 186
Query: 226 MTRA 229
++RA
Sbjct: 187 VSRA 190
>pdb|1UEB|A Chain A, Crystal Structure Of Translation Elongation Factor P From
Thermus Thermophilus Hb8
pdb|1UEB|B Chain B, Crystal Structure Of Translation Elongation Factor P From
Thermus Thermophilus Hb8
pdb|3HUW|V Chain V, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
pdb|3HUY|V Chain V, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii
Length = 184
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 119/186 (63%), Gaps = 5/186 (2%)
Query: 46 FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
S D++ G+ +++DG W +E+ H K G+G A V K +N +G TVERTF +G +E
Sbjct: 2 ISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLE 61
Query: 106 EADVFKETK--QFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGK 163
D++ ET+ Q+ Y +G VFMDL T+E+ + + V ++ KEGM ++G+
Sbjct: 62 --DIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRV-VGAEFFKEGMTALGDMYEGQ 118
Query: 164 IIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTG 223
I P V+L VVD PG++GDT SGGSKPATL+TGAVV VPLFV G+ I VDTRTG
Sbjct: 119 PIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTG 178
Query: 224 QYMTRA 229
+Y+ RA
Sbjct: 179 EYVGRA 184
>pdb|3OYY|A Chain A, Structure Of Pseudomonas Aeruginosa Elongation Factor P
pdb|3OYY|B Chain B, Structure Of Pseudomonas Aeruginosa Elongation Factor P
Length = 191
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
++ + + G ++GAPW + + K G+ AA V+ KL+N ++G E F+A +E
Sbjct: 6 TAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEP 65
Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMD--CNLLFWKGKI 164
+ ++ ++Y ++VFMD + F + + + D+ ++++GM C +F+ K+
Sbjct: 66 IILDRKEVTYSYFADPLYVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKV 124
Query: 165 IDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQ 224
I E+P T+ + +P ++GDT+ K A L+ GA + V F IGD I +DTRTG+
Sbjct: 125 ISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGE 184
Query: 225 YMTR 228
Y +R
Sbjct: 185 YKSR 188
>pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From
Methanococcus Jannaschii
Length = 136
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 40 FPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTF 98
P + +KVG + +DG P +++ KPGK G A R E
Sbjct: 5 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVA 64
Query: 99 RAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRL 137
VE + + Q G M MDL T+E + L
Sbjct: 65 PTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETLEL 103
>pdb|1EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From
Methanococcus Jannaschii
Length = 135
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 40 FPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTF 98
P + +KVG + +DG P +++ KPGK G A R E
Sbjct: 4 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVA 63
Query: 99 RAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRL 137
VE + + Q G M MDL T+E + L
Sbjct: 64 PTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETLEL 102
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 29 PSVLPMR-----PRSKFPRIYAFSSNDIKVGSNIEVD 60
P+++P+R +FPRI FSS DI+ G + D
Sbjct: 207 PNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFD 243
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 29 PSVLPMR-----PRSKFPRIYAFSSNDIKVGSNIEVD 60
P+++P+R +FPRI FSS DI+ G + D
Sbjct: 205 PNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFD 241
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Query: 39 KFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTF 98
+ P + +SS+D + G+ + G V++F PG+ T N + + +F
Sbjct: 60 EMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSF 119
Query: 99 RAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETD 141
IT VF E + KD + F ++ + + D
Sbjct: 120 HMAITWWGEQVFNEMETIV-KDKGINTFXHFMAYKGALMVDDD 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,491,569
Number of Sequences: 62578
Number of extensions: 270810
Number of successful extensions: 546
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 11
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)