Query 027058
Match_columns 229
No_of_seqs 149 out of 1244
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yby_A Translation elongation 100.0 2.5E-77 8.7E-82 517.5 25.3 189 41-229 27-215 (215)
2 1ueb_A EF-P, TT0860, elongatio 100.0 1.6E-76 5.6E-81 502.3 27.4 184 45-229 1-184 (184)
3 3oyy_A EF-P, elongation factor 100.0 6.8E-76 2.3E-80 500.9 26.2 185 44-229 3-189 (191)
4 3tre_A EF-P, elongation factor 100.0 7.1E-77 2.4E-81 507.1 18.3 188 42-229 3-190 (191)
5 3a5z_B EF-P, elongation factor 100.0 2E-77 6.7E-82 510.4 14.2 188 42-229 3-190 (191)
6 1bkb_A Translation initiation 100.0 9E-42 3.1E-46 276.5 19.0 125 43-167 6-132 (136)
7 1iz6_A Initiation factor 5A; S 100.0 9E-41 3.1E-45 271.4 19.1 124 42-165 3-129 (138)
8 3cpf_A Eukaryotic translation 100.0 1.7E-40 5.9E-45 269.7 15.4 120 42-161 3-126 (138)
9 2eif_A IF-5A, protein (eukaryo 100.0 3.8E-39 1.3E-43 261.2 19.0 120 43-165 8-128 (136)
10 1x6o_A Eukaryotic initiation f 100.0 1.1E-37 3.6E-42 262.0 16.8 120 42-161 27-158 (174)
11 3er0_A Eukaryotic translation 100.0 2.7E-38 9.2E-43 264.1 11.8 120 42-161 27-150 (167)
12 3hks_A EIF-5A-2, eukaryotic tr 100.0 1.5E-36 5E-41 253.5 16.8 120 42-161 25-150 (167)
13 1khi_A HEX1; membrane sealing, 99.7 1E-15 3.5E-20 128.1 15.8 118 40-163 29-162 (176)
14 3r8s_P 50S ribosomal protein L 69.6 10 0.00035 29.2 5.9 66 46-112 14-88 (114)
15 2ftc_K 39S ribosomal protein L 67.7 25 0.00085 26.3 7.5 62 49-111 2-71 (98)
16 3v2d_T 50S ribosomal protein L 65.7 13 0.00044 29.8 5.9 66 46-112 17-91 (146)
17 1ed7_A Chitinase A1, (CHBD-CHI 55.6 3.5 0.00012 26.3 0.7 26 50-75 7-32 (45)
18 1dj7_B Ferredoxin thioredoxin 55.5 2.6 8.9E-05 30.3 0.1 26 150-175 28-57 (75)
19 2zjr_M 50S ribosomal protein L 54.6 12 0.00042 30.6 4.0 66 46-112 22-96 (166)
20 1yfb_A Transition state regula 51.6 19 0.00063 24.3 4.0 34 130-165 19-52 (59)
21 2jn4_A Hypothetical protein FI 49.7 53 0.0018 24.0 6.4 53 150-209 19-72 (87)
22 3o27_A Putative uncharacterize 48.4 23 0.0008 24.8 4.1 34 129-165 22-57 (68)
23 2qo4_A Liver-basic fatty acid 43.7 82 0.0028 23.8 7.1 46 82-127 47-93 (126)
24 1mvg_A Liver basic fatty acid 43.2 86 0.003 23.7 7.2 45 82-126 46-91 (125)
25 1ifc_A Intestinal fatty acid b 40.8 96 0.0033 23.6 7.1 45 82-126 47-92 (132)
26 4a1y_A Myelin P2 protein; tran 40.5 43 0.0015 25.8 5.1 45 83-127 51-96 (133)
27 1b56_A Fatty acid binding prot 39.6 1E+02 0.0035 23.6 7.1 45 82-126 51-96 (135)
28 3ppt_A Sodium-calcium exchange 39.2 1E+02 0.0035 23.6 7.1 45 82-126 48-93 (133)
29 3kbg_A 30S ribosomal protein S 39.1 33 0.0011 29.0 4.5 34 193-226 100-134 (213)
30 1mdc_A Insect fatty acid bindi 38.9 1.1E+02 0.0037 23.3 7.2 45 82-126 48-93 (132)
31 2f9h_A PTS system, IIA compone 38.3 27 0.00093 27.2 3.6 22 49-70 53-74 (129)
32 1eal_A Gastrotropin, ileal lip 37.6 1.3E+02 0.0045 22.7 7.4 45 82-126 46-92 (127)
33 1o8v_A Fatty acid binding prot 37.3 75 0.0026 24.3 6.0 45 82-126 50-95 (134)
34 2pp6_A Gifsy-2 prophage ATP-bi 37.3 63 0.0022 24.3 5.3 30 52-84 65-94 (102)
35 1vyf_A SM14, 14 kDa fatty acid 36.7 1.1E+02 0.0036 23.5 6.8 45 82-126 50-96 (135)
36 2lba_A BABP protein; ileal bIl 35.8 1.3E+02 0.0043 23.2 7.1 46 82-127 51-98 (136)
37 1p6p_A Fatty acid-binding prot 35.8 79 0.0027 23.9 5.8 45 82-126 46-91 (125)
38 2a0a_A DER F 13; beta barrel, 35.3 1.4E+02 0.0049 22.6 7.3 45 82-126 48-94 (131)
39 1ggl_A Protein (cellular retin 33.5 1.4E+02 0.0046 22.9 7.0 44 83-126 49-95 (134)
40 1fdq_A Fatty acid-binding prot 33.4 90 0.0031 23.7 5.9 45 82-126 48-93 (131)
41 2rcq_A CRBP-II, retinol-bindin 33.2 1.2E+02 0.0041 23.5 6.6 45 82-126 52-99 (141)
42 4a60_A Fatty acid-binding prot 31.9 1.1E+02 0.0039 24.1 6.4 45 82-126 71-116 (154)
43 3q6l_A Fatty acid-binding prot 31.5 1.4E+02 0.0049 23.4 6.9 45 82-126 69-114 (152)
44 1at0_A 17-hedgehog; developmen 31.1 52 0.0018 25.4 4.2 32 41-72 82-119 (145)
45 2f73_A L-FABP, fatty acid-bind 30.8 1.1E+02 0.0039 23.9 6.2 45 82-126 69-115 (149)
46 1ftp_A Muscle fatty acid bindi 30.7 1.8E+02 0.006 22.1 7.3 45 82-126 50-96 (133)
47 3p6d_A Fatty acid-binding prot 30.7 1.6E+02 0.0053 22.7 6.9 45 82-126 56-101 (139)
48 1lpj_A Retinol-binding protein 30.7 1.5E+02 0.0053 22.4 6.8 45 82-126 48-95 (133)
49 3rsw_A Fatty acid-binding prot 30.6 1.2E+02 0.004 24.2 6.3 45 82-126 74-119 (158)
50 3iz6_D 40S ribosomal protein S 30.6 51 0.0017 28.8 4.4 32 194-225 137-169 (265)
51 3vg7_A Fatty acid-binding prot 30.5 1.4E+02 0.0049 22.7 6.6 46 82-127 50-97 (132)
52 3elx_A Ileal bIle acid-binding 30.1 1.1E+02 0.0036 23.8 5.8 46 82-127 50-97 (138)
53 1mvf_D MAZE protein, PEMI-like 30.0 55 0.0019 22.7 3.8 31 133-165 13-43 (82)
54 1crb_A Cellular retinol bindin 30.0 1.2E+02 0.0043 23.0 6.2 45 82-126 48-95 (134)
55 2k50_A Replication factor A re 29.7 68 0.0023 23.3 4.5 51 45-99 7-62 (115)
56 1h95_A CSD, Y-box binding prot 28.4 52 0.0018 23.0 3.4 53 118-170 16-78 (79)
57 1jt8_A EIF-1A, probable transl 27.9 48 0.0016 24.8 3.3 49 165-221 10-70 (102)
58 3u5c_E RP5, S7, YS6, 40S ribos 27.9 55 0.0019 28.5 4.1 31 195-225 138-169 (261)
59 3j20_E 30S ribosomal protein S 27.6 37 0.0013 29.3 2.9 30 196-225 140-173 (243)
60 2xzm_W 40S ribosomal protein S 27.4 53 0.0018 28.6 3.9 29 196-224 141-170 (260)
61 1we3_O CPN10(groes); chaperoni 26.8 1.1E+02 0.0038 22.6 5.1 45 16-60 16-73 (100)
62 1g6p_A Cold shock protein TMCS 26.2 97 0.0033 20.7 4.4 45 118-162 8-53 (66)
63 2l66_A SSO7C4, transcriptional 25.7 25 0.00085 22.7 1.2 31 131-163 10-40 (53)
64 2dgy_A MGC11102 protein; EIF-1 25.2 1.5E+02 0.005 22.3 5.6 14 208-221 52-65 (111)
65 1p3h_A 10 kDa chaperonin; beta 24.3 1.9E+02 0.0065 21.3 6.0 43 17-59 14-70 (99)
66 2kca_A Bacteriophage SPP1 comp 22.8 2E+02 0.0069 20.2 6.3 39 48-88 65-104 (109)
67 4h87_A Kanadaptin; FHA domain 22.6 49 0.0017 25.2 2.5 54 104-157 55-119 (130)
68 3gqs_A Adenylate cyclase-like 22.1 35 0.0012 24.7 1.5 53 104-157 40-92 (106)
69 2g7b_A Cellular retinoic acid- 22.1 1.1E+02 0.0039 23.3 4.6 45 82-126 49-95 (137)
70 2ki8_A Tungsten formylmethanof 21.7 49 0.0017 25.6 2.4 21 208-228 65-85 (146)
71 1wlf_A PEX1, peroxisome biogen 21.2 96 0.0033 24.9 4.1 43 147-206 133-175 (179)
72 2fhd_A RAD9 homolog, DNA repai 20.9 91 0.0031 25.0 3.8 39 47-85 60-110 (153)
73 2ftc_B Mitochondrial ribosomal 20.9 2.4E+02 0.0082 21.9 6.2 70 44-121 25-96 (136)
74 2kcm_A Cold shock domain famil 20.2 2.2E+02 0.0075 19.6 6.3 45 118-162 8-54 (74)
75 2l55_A SILB,silver efflux prot 20.1 1.4E+02 0.0047 21.1 4.3 31 48-78 45-80 (82)
No 1
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=2.5e-77 Score=517.52 Aligned_cols=189 Identities=47% Similarity=0.785 Sum_probs=175.2
Q ss_pred ceEEEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058 41 PRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD 120 (229)
Q Consensus 41 ~~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D 120 (229)
.|.+|++++|||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|++|+++|++|.|+++++++||||.|
T Consensus 27 ~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~D 106 (215)
T 1yby_A 27 KAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYND 106 (215)
T ss_dssp ----CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEE
T ss_pred hCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEeC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecC
Q 027058 121 GSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDT 200 (229)
Q Consensus 121 gd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~Let 200 (229)
||.|+|||+|||||++|+.+.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+|||
T Consensus 107 gd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~KpA~leT 186 (215)
T 1yby_A 107 GDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVET 186 (215)
T ss_dssp TTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETT
T ss_pred CCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCccEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058 201 GAVVNVPLFVNIGDEILVDTRTGQYMTRA 229 (229)
Q Consensus 201 G~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~ 229 (229)
|++|+||+||++||+|+||||||+|++||
T Consensus 187 G~~v~VP~FI~~Gd~I~VdT~~g~Y~~R~ 215 (215)
T 1yby_A 187 GASIKVPLFVNKGDIIRIDTRTGEYMERV 215 (215)
T ss_dssp SCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred CcEEEeCCcEeCCCEEEEECCCCeEeccC
Confidence 99999999999999999999999999997
No 2
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=1.6e-76 Score=502.27 Aligned_cols=184 Identities=45% Similarity=0.749 Sum_probs=182.7
Q ss_pred EEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCCeE
Q 027058 45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMF 124 (229)
Q Consensus 45 ~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd~~ 124 (229)
|+++|+||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|++|+++|++|.|+++|+++||||.|||.|
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~ 80 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM 80 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCCcEE
Q 027058 125 VFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVV 204 (229)
Q Consensus 125 ~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG~~v 204 (229)
+|||+|||||++|+.+.+|++ +||+||++|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||++|
T Consensus 81 ~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v 159 (184)
T 1ueb_A 81 VFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVV 159 (184)
T ss_dssp EEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEE
T ss_pred EEeeCCCceeEEcCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcCCCEE
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCeecCCEEEEEcCCCeeeecC
Q 027058 205 NVPLFVNIGDEILVDTRTGQYMTRA 229 (229)
Q Consensus 205 ~VP~FI~~Gd~I~V~T~~g~Y~~R~ 229 (229)
+||+||++||+|+||||||+|++||
T Consensus 160 ~VP~fi~~Gd~I~vdT~~g~Y~~R~ 184 (184)
T 1ueb_A 160 QVPLFVEPGEVIKVDTRTGEYVGRA 184 (184)
T ss_dssp EEETTCCTTCEEEEETTTTEEEEEC
T ss_pred EeCCcCcCCCEEEEECCCCeEeccC
Confidence 9999999999999999999999997
No 3
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.8e-76 Score=500.92 Aligned_cols=185 Identities=30% Similarity=0.608 Sum_probs=181.5
Q ss_pred EEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCCe
Q 027058 44 YAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSM 123 (229)
Q Consensus 44 ~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd~ 123 (229)
.|+++++||+|++|++||+||+|++++|+|||||+||+|+|||||+||+++|++|+++|++|.++++++++||||.||+.
T Consensus 3 ~m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 82 (191)
T 3oyy_A 3 SMKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL 82 (191)
T ss_dssp CCEEGGGCCTTCEEEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred ccccHHhCCCCCEEEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeecCccchhhhhhccCCCCe--EEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCC
Q 027058 124 FVFMDLTTFEEVRLNETDVGDKKKWLKEGMD--CNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTG 201 (229)
Q Consensus 124 ~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~--v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG 201 (229)
|+||| |||||+++|++.+||+.+||+|||+ |++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||
T Consensus 83 ~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG 161 (191)
T 3oyy_A 83 YVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNG 161 (191)
T ss_dssp EEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETTS
T ss_pred EEEEe-cChhheeCChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeCC
Confidence 99999 9999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058 202 AVVNVPLFVNIGDEILVDTRTGQYMTRA 229 (229)
Q Consensus 202 ~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~ 229 (229)
++||||+||++||+|+||||||+|++||
T Consensus 162 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~ 189 (191)
T 3oyy_A 162 AELQVSAFCEIGDSIEIDTRTGEYKSRV 189 (191)
T ss_dssp CEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred CEEEeCCeeeCCCEEEEECCCCeEhhhc
Confidence 9999999999999999999999999997
No 4
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=7.1e-77 Score=507.06 Aligned_cols=188 Identities=43% Similarity=0.764 Sum_probs=128.5
Q ss_pred eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058 42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG 121 (229)
Q Consensus 42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg 121 (229)
.|+|+++++||+|++|++||+||+|++++|+|||||+||+|+|||||+||+++|++|+++|++|.|+++|+++||||.||
T Consensus 3 ~m~m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dg 82 (191)
T 3tre_A 3 AMATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDG 82 (191)
T ss_dssp ---CEEGGGCCTTCEEEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECS
T ss_pred eeEEEEHHHCCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcC
Confidence 36689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCC
Q 027058 122 SMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTG 201 (229)
Q Consensus 122 d~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG 201 (229)
+.|+|||+|||||+++|++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||
T Consensus 83 d~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG 162 (191)
T 3tre_A 83 EFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLETG 162 (191)
T ss_dssp SCEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC----------------------------
T ss_pred CcEEEccCCchHheecchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCcCeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058 202 AVVNVPLFVNIGDEILVDTRTGQYMTRA 229 (229)
Q Consensus 202 ~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~ 229 (229)
++|+||+||++||+|+||||||+|++||
T Consensus 163 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~ 190 (191)
T 3tre_A 163 AVVRVPLFLNEGEIIKVDTRRGEYVSRA 190 (191)
T ss_dssp ----------------------------
T ss_pred CEEEeCCeEcCCCEEEEECCCCeEeccc
Confidence 9999999999999999999999999997
No 5
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=2e-77 Score=510.44 Aligned_cols=188 Identities=47% Similarity=0.821 Sum_probs=133.3
Q ss_pred eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058 42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG 121 (229)
Q Consensus 42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg 121 (229)
+|+++++||||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|++|+++|++|.|+++|+++||||.||
T Consensus 3 ~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dg 82 (191)
T 3a5z_B 3 HMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDG 82 (191)
T ss_dssp ---CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECS
T ss_pred ccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCC
Q 027058 122 SMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTG 201 (229)
Q Consensus 122 d~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG 201 (229)
|.|+|||+|||||++|+++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||
T Consensus 83 d~~~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG 162 (191)
T 3a5z_B 83 EFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTG 162 (191)
T ss_dssp SCEEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC-----------------------
T ss_pred CEEEEeeCCCCeEEEccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058 202 AVVNVPLFVNIGDEILVDTRTGQYMTRA 229 (229)
Q Consensus 202 ~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~ 229 (229)
++|+||+||++||+|+||||||+|++||
T Consensus 163 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~ 190 (191)
T 3a5z_B 163 AVVKVPLFVQIGEVIKVDTRSGEYVSRV 190 (191)
T ss_dssp ----------------------------
T ss_pred CEEEeCCcEeCCCEEEEECCCCeEeecc
Confidence 9999999999999999999999999997
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=9e-42 Score=276.53 Aligned_cols=125 Identities=21% Similarity=0.253 Sum_probs=121.4
Q ss_pred EEEEEccccCCccEEEECCcEEEEEEEeEeeCCCC-ceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058 43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKG-AAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG 121 (229)
Q Consensus 43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG-~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg 121 (229)
.+.+++++||+|++|++||+||+|++++|+||||| +||+|+++|||+||+++|.+|+++|++|.|+++++++||||.||
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg 85 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG 85 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence 57899999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCceeeecCccc-hhhhhhccCCCCeEEEEEECCeEEEE
Q 027058 122 SMFVFMDLTTFEEVRLNETD-VGDKKKWLKEGMDCNLLFWKGKIIDF 167 (229)
Q Consensus 122 d~~~FMD~etyEQi~v~~~~-lgd~~~fL~eG~~v~v~~~~g~~i~v 167 (229)
+.|+|||+|||||++|+.+. +|++.+||+||++|.+++|+|++.-+
T Consensus 86 ~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~ 132 (136)
T 1bkb_A 86 DVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKII 132 (136)
T ss_dssp SEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCCeEEEeccccchhHHHhhCCCCCEEEEEEECCEEEEE
Confidence 99999999999999999999 99999999999999999999987644
No 7
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=9e-41 Score=271.44 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=120.2
Q ss_pred eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058 42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD 120 (229)
Q Consensus 42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D 120 (229)
..+.+++++||+|++|++||+||+|++++|+|||| |+||+|+++|||+||+++|.+|+++|++|.|+++++++||||.|
T Consensus 3 ~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~d 82 (138)
T 1iz6_A 3 DKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAIT 82 (138)
T ss_dssp CEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEC
T ss_pred ceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeC
Confidence 35789999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCceeeec--CccchhhhhhccCCCCeEEEEEECCeEE
Q 027058 121 GSMFVFMDLTTFEEVRL--NETDVGDKKKWLKEGMDCNLLFWKGKII 165 (229)
Q Consensus 121 gd~~~FMD~etyEQi~v--~~~~lgd~~~fL~eG~~v~v~~~~g~~i 165 (229)
|+.|+|||+|||||++| |.+.+|++.+||+||++|.|+++.|+..
T Consensus 83 g~~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~ 129 (138)
T 1iz6_A 83 PDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK 129 (138)
T ss_dssp SSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred CCEEEEEeCCCCceEEeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence 99999999999999999 8899999999999999999999998854
No 8
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=269.73 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=113.2
Q ss_pred eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCCC-ceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058 42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKG-AAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD 120 (229)
Q Consensus 42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG-~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D 120 (229)
.++++++++||+|++|++||+||+|++++|+||||| +||+|+++|||+||+++|++|+++|++|.|+++|+++||||.|
T Consensus 3 ~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~d 82 (138)
T 3cpf_A 3 ATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ 82 (138)
T ss_dssp CEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEE
T ss_pred ccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEec
Confidence 357999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCceeee--cCccchhhhh-hccCCCCeEEEEEEC
Q 027058 121 GSMFVFMDLTTFEEVR--LNETDVGDKK-KWLKEGMDCNLLFWK 161 (229)
Q Consensus 121 gd~~~FMD~etyEQi~--v~~~~lgd~~-~fL~eG~~v~v~~~~ 161 (229)
|+.|+|||+|||||++ +|.+.+|++. +||+||++|.|.+|.
T Consensus 83 g~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~ 126 (138)
T 3cpf_A 83 DGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS 126 (138)
T ss_dssp TTEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred CCEEEEEcCCCCeEeeecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 9999999999999999 7999999999 899999999998883
No 9
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=3.8e-39 Score=261.22 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=116.5
Q ss_pred EEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058 43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG 121 (229)
Q Consensus 43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg 121 (229)
.+.+++++||+|++|++||+||+|++++|+|||| |+||+|+|+|||+||+++|.+|++++++|.|+++++++||||.||
T Consensus 8 t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg 87 (136)
T 2eif_A 8 TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMG 87 (136)
T ss_dssp EEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEET
T ss_pred eEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecC
Confidence 4678999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEE
Q 027058 122 SMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165 (229)
Q Consensus 122 d~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i 165 (229)
+.|+|||+|||||++|+.+ |++.+ |+||++|++++|+|+..
T Consensus 88 ~~~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~ 128 (136)
T 2eif_A 88 DMVQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYK 128 (136)
T ss_dssp TEEEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEE
T ss_pred CEEEEEeCCCceEEEecCC--Cchhh-CCCCCEEEEEEECCEEE
Confidence 9999999999999999998 88889 99999999999999865
No 10
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=1.1e-37 Score=261.98 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=112.5
Q ss_pred eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058 42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD 120 (229)
Q Consensus 42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D 120 (229)
.++++++++||+|++|++||+||+|++++|+|||| |+||||+++|||+||+++|.+|++++++|.|.|+|+++||||.|
T Consensus 27 ~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~d 106 (174)
T 1x6o_A 27 KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQ 106 (174)
T ss_dssp CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEE
T ss_pred eeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEec
Confidence 35899999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred CC-------eEEEecCCCceeeec--Ccc-chhhh-hhccCCCCeEEEEEEC
Q 027058 121 GS-------MFVFMDLTTFEEVRL--NET-DVGDK-KKWLKEGMDCNLLFWK 161 (229)
Q Consensus 121 gd-------~~~FMD~etyEQi~v--~~~-~lgd~-~~fL~eG~~v~v~~~~ 161 (229)
|| .|+|||+|+|||+.| |.+ .||++ .+||+||++|.|.+|.
T Consensus 107 gd~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~ 158 (174)
T 1x6o_A 107 ANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS 158 (174)
T ss_dssp CCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCcccccccEEEEEcCCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence 99 999999999999999 677 89999 8999999999999984
No 11
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=264.07 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=116.1
Q ss_pred eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058 42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD 120 (229)
Q Consensus 42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D 120 (229)
.++.|++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+++|+++||||.|
T Consensus 27 ~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~d 106 (167)
T 3er0_A 27 ATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDID 106 (167)
T ss_dssp CCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCT
T ss_pred ceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCccccceEEEeeEEEEEEc
Confidence 46899999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCeEEEec--CCCceeeecCccchhhhh-hccCCCCeEEEEEEC
Q 027058 121 GSMFVFMD--LTTFEEVRLNETDVGDKK-KWLKEGMDCNLLFWK 161 (229)
Q Consensus 121 gd~~~FMD--~etyEQi~v~~~~lgd~~-~fL~eG~~v~v~~~~ 161 (229)
|+.|+||| .+||||+.||++.||+++ .||+||++|.|++|+
T Consensus 107 g~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~ 150 (167)
T 3er0_A 107 DGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIIS 150 (167)
T ss_dssp TTTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred CCEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 99999999 899999999999999988 689999999999884
No 12
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-36 Score=253.48 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=112.7
Q ss_pred eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058 42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD 120 (229)
Q Consensus 42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D 120 (229)
.++.|++++||+|++|++||+||+|++++|+|||| |+||+|+++|||+||+++|.+|++++++|.|.|+++++||||.|
T Consensus 25 ~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d 104 (167)
T 3hks_A 25 KTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDIT 104 (167)
T ss_dssp CEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEC
T ss_pred ccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCEEEeeeEEEEEEEEEEEC
Confidence 46899999999999999999999999999999999 99999999999999999999999999999999999999999996
Q ss_pred C-CeEEEecCCCceee--ecCcc-chhhhh-hccCCCCeEEEEEEC
Q 027058 121 G-SMFVFMDLTTFEEV--RLNET-DVGDKK-KWLKEGMDCNLLFWK 161 (229)
Q Consensus 121 g-d~~~FMD~etyEQi--~v~~~-~lgd~~-~fL~eG~~v~v~~~~ 161 (229)
+ +.|+|||++||||+ .||.+ .|++++ .||+||++|.|.+|+
T Consensus 105 ~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~ 150 (167)
T 3hks_A 105 EDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS 150 (167)
T ss_dssp TTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence 5 68999999999996 56677 899976 899999999988884
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.68 E-value=1e-15 Score=128.08 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=100.9
Q ss_pred CceEEEEEccccCCccEEEECCcEEEEEEEeEe-eCCCCceEEEEEEEECCCCCEEEEEecCC--------CeEEEeeee
Q 027058 40 FPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHV-KPGKGAAFVRTKLRNYMSGTTVERTFRAG--------ITVEEADVF 110 (229)
Q Consensus 40 ~~~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~-kpGKG~A~vriklknL~TG~~~e~tf~s~--------dkve~~~ve 110 (229)
-+..+.+++++||+|.+|+++|+||+|++++.+ ||||= ++...|||||+|.|...+++ ++++.|.++
T Consensus 29 as~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm~VPvVk 104 (176)
T 1khi_A 29 ASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFK 104 (176)
T ss_dssp SCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCE
T ss_pred CCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce----EEEEEEccCCcEeEEeccccCCCcccccceeccceeE
Confidence 335789999999999999999999999999999 89994 89999999999999999999 899999996
Q ss_pred eeeeEEEEEeCCeEEEecCCCceeeec--Cc-cchhhhh-hccCCCCe---EEEEEECCe
Q 027058 111 KETKQFTYKDGSMFVFMDLTTFEEVRL--NE-TDVGDKK-KWLKEGMD---CNLLFWKGK 163 (229)
Q Consensus 111 rk~~qylY~Dgd~~~FMD~etyEQi~v--~~-~~lgd~~-~fL~eG~~---v~v~~~~g~ 163 (229)
++|++..+++..++||.++|+...| |. +.|++.+ ..+.+|.+ |.++-..|+
T Consensus 105 --~yQlldI~dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~ 162 (176)
T 1khi_A 105 --QYRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGR 162 (176)
T ss_dssp --EEEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTE
T ss_pred --EEEEEEEcCCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCc
Confidence 9999999999999999988766554 54 4466544 45678876 777777676
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=69.61 E-value=10 Score=29.18 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=46.0
Q ss_pred EEccccCCccEEEE-----CCcEEEEEEEeEeeC---CCCceEEEEEEEECCCCCEEEEEecCCCe-EEEeeeeee
Q 027058 46 FSSNDIKVGSNIEV-----DGAPWRVLEFLHVKP---GKGAAFVRTKLRNYMSGTTVERTFRAGIT-VEEADVFKE 112 (229)
Q Consensus 46 i~a~dirkG~~I~~-----dG~py~Vv~~~~~kp---GKG~A~vriklknL~TG~~~e~tf~s~dk-ve~~~verk 112 (229)
.+..++++||+|.. +|.-.++..|+-+-- |+|- .-.+.++++..|-=+|.+|+-... ++.+++-++
T Consensus 14 ~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 14 QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGL-HSAFTVRKISNGEGVERVFQTHSPVVDSISVKRR 88 (114)
T ss_dssp SCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEEc
Confidence 35679999999975 466666666654333 3332 235779999999999999986543 677776665
No 15
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=67.66 E-value=25 Score=26.29 Aligned_cols=62 Identities=32% Similarity=0.363 Sum_probs=40.3
Q ss_pred cccCCccEEEE----CCcEEEEEEEeEeeC---CCCceEEEEEEEECCCCCEEEEEecCCCe-EEEeeeee
Q 027058 49 NDIKVGSNIEV----DGAPWRVLEFLHVKP---GKGAAFVRTKLRNYMSGTTVERTFRAGIT-VEEADVFK 111 (229)
Q Consensus 49 ~dirkG~~I~~----dG~py~Vv~~~~~kp---GKG~A~vriklknL~TG~~~e~tf~s~dk-ve~~~ver 111 (229)
.++++||+|.. .|.-.++..++-+-- |+|- .-.+.+|++..|-=+|.+|+-... ++.+++.+
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r 71 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGL-GATFILRNVIEGQGVEICFELYNPRVQEIQVVK 71 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCC-CcEEEEEEeccCceEEEEEecCCCceeEEEEEE
Confidence 47889998855 343444444543332 3332 347899999999999999976543 55555554
No 16
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=65.65 E-value=13 Score=29.84 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=45.2
Q ss_pred EEccccCCccEEEE-----CCcEEEEEEEeEeeC---CCCceEEEEEEEECCCCCEEEEEecCCCe-EEEeeeeee
Q 027058 46 FSSNDIKVGSNIEV-----DGAPWRVLEFLHVKP---GKGAAFVRTKLRNYMSGTTVERTFRAGIT-VEEADVFKE 112 (229)
Q Consensus 46 i~a~dirkG~~I~~-----dG~py~Vv~~~~~kp---GKG~A~vriklknL~TG~~~e~tf~s~dk-ve~~~verk 112 (229)
.+..+|++||+|.+ +|.-.++-.|+-+-- |+|- .-.+.++++..|-=+|.+|+-... ++.+++-++
T Consensus 17 ~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl-~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 17 TDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF-NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQR 91 (146)
T ss_dssp CCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred ccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEec
Confidence 35679999999865 565555555554332 3322 235779999999999999985543 777777665
No 17
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=55.65 E-value=3.5 Score=26.30 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=21.5
Q ss_pred ccCCccEEEECCcEEEEEEEeEeeCC
Q 027058 50 DIKVGSNIEVDGAPWRVLEFLHVKPG 75 (229)
Q Consensus 50 dirkG~~I~~dG~py~Vv~~~~~kpG 75 (229)
..+.|++|.++|..|+++.-....+|
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~hts~~~ 32 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLAG 32 (45)
T ss_dssp EECTTCCEEETTEEECBCSCEEECTT
T ss_pred eEcCCCEEEECCeEEEEEecCcCcCC
Confidence 45789999999999999988776443
No 18
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=55.46 E-value=2.6 Score=30.29 Aligned_cols=26 Identities=31% Similarity=0.755 Sum_probs=19.8
Q ss_pred CCCCe---EEEE-EECCeEEEEECCceEEE
Q 027058 150 KEGMD---CNLL-FWKGKIIDFEVPITVQL 175 (229)
Q Consensus 150 ~eG~~---v~v~-~~~g~~i~v~lP~~V~l 175 (229)
..||+ .+++ .|+|++||..||-.|.+
T Consensus 28 l~GmEGeV~~~v~~wkGr~ISanlP~~V~F 57 (75)
T 1dj7_B 28 LQGMEGEVAAVLTEWQGRPISANLPVLVKF 57 (75)
T ss_dssp CTTCEEEEEEECSEETTEECCCSSCEEEEE
T ss_pred cccCEEEEEEEEeeccCcEecCCCCEEEEE
Confidence 34554 4433 48999999999999988
No 19
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=54.61 E-value=12 Score=30.59 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=45.3
Q ss_pred EEccccCCccEEEE-----CCcEEEEEEEeEee---CCCCceEEEEEEEECCCCCEEEEEecCCCe-EEEeeeeee
Q 027058 46 FSSNDIKVGSNIEV-----DGAPWRVLEFLHVK---PGKGAAFVRTKLRNYMSGTTVERTFRAGIT-VEEADVFKE 112 (229)
Q Consensus 46 i~a~dirkG~~I~~-----dG~py~Vv~~~~~k---pGKG~A~vriklknL~TG~~~e~tf~s~dk-ve~~~verk 112 (229)
.+..+|++||+|.+ +|.-.++--|+-+- -|+|- .-.+.+|++..|-=+|.+|+-... ++.+++.++
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl-~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrr 96 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGS-RKSFTVRKISFGEGVERVFPFASPLVNQVTIVER 96 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCC-CcEEEEEEecCCeeEEEEEecCCCccceEEEEec
Confidence 35678999999976 45544444444322 23332 346889999999999999986654 777777765
No 20
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=51.55 E-value=19 Score=24.25 Aligned_cols=34 Identities=15% Similarity=-0.011 Sum_probs=25.1
Q ss_pred CCceeeecCccchhhhhhccCCCCeEEEEEECCeEE
Q 027058 130 TTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165 (229)
Q Consensus 130 etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i 165 (229)
..--|+.||++... ++ -|++|+.+.+...+|+++
T Consensus 19 ~~kGqItIPkeiR~-~L-gi~~Gd~l~i~~~~~~Ii 52 (59)
T 1yfb_A 19 DELGRVVIPIELRR-TL-GIAEKDALEIYVDDEKII 52 (59)
T ss_dssp CTTCEEECCHHHHH-HT-TCCTTCEEEEEEETTEEE
T ss_pred CCCCEEEeCHHHHH-Hc-CCCCCCEEEEEEECCEEE
Confidence 35669999987752 22 379999999988888643
No 21
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=49.67 E-value=53 Score=24.02 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=35.6
Q ss_pred CCCCeEEEEEECCeEEEEECCce-EEEEEEEcCCCcccccCCCCcccEEecCCcEEEcccC
Q 027058 150 KEGMDCNLLFWKGKIIDFEVPIT-VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLF 209 (229)
Q Consensus 150 ~eG~~v~v~~~~g~~i~v~lP~~-V~l~V~et~p~~kgdta~~~~K~A~LetG~~v~VP~F 209 (229)
-.||.|.+...+. -+++-+|.. +|=.|++.|. ...--..++|+||.+..+|..
T Consensus 19 ~~~MKVMIR~~~~-GLs~YVpKKDLEE~VVs~E~------~~~WGG~vtLaNGw~l~lp~l 72 (87)
T 2jn4_A 19 FQGMKVMIRKTAT-GHSAYVAKKDLEELIVEMEN------PALWGGKVTLANGWQLELPAM 72 (87)
T ss_dssp ---CCEEEEECSS-CEEEEETTTTEEEEEEEESS------SSSCSSEEEETTSCEEECCCC
T ss_pred ecCCeEEEEeCCC-ceEEEEeCCcchhheeeeec------ccccCcEEEECCccEEEeCCC
Confidence 3589999954443 399999975 5666777552 111236899999999999875
No 22
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=48.42 E-value=23 Score=24.77 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=24.4
Q ss_pred CCCceeeecCccchhhhhhccCCCCeEEEEEE--CCeEE
Q 027058 129 LTTFEEVRLNETDVGDKKKWLKEGMDCNLLFW--KGKII 165 (229)
Q Consensus 129 ~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~--~g~~i 165 (229)
.|+| |+.+|.+.. +++ -|++|+++++... +|+++
T Consensus 22 ~ety-YInIPaeI~-kaL-gIk~gD~fel~ve~kdgeIv 57 (68)
T 3o27_A 22 HTTF-YLLIPKDIA-EAL-DIKPDDTFILNMEQKDGDIV 57 (68)
T ss_dssp CCCE-EEEECHHHH-HHT-TCCTTCCEEEEEEEETTEEE
T ss_pred ceEE-EEeCcHHHH-HHh-CCCCCCEEEEEEecCCCeEE
Confidence 4777 899998764 233 3799998888776 67653
No 23
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=43.67 E-value=82 Score=23.83 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=35.9
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEEe
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVFM 127 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~FM 127 (229)
++.++...+.+..+.+|+-|+.+|.-.++-+.++-++. ||+.++..
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~~ 93 (126)
T 2qo4_A 47 DFTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVCR 93 (126)
T ss_dssp EEEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEEE
Confidence 34555666778899999999999999999888887765 77776653
No 24
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=43.24 E-value=86 Score=23.70 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=36.8
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVT 91 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 46666778888999999999999999999888887766 7776654
No 25
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=40.79 E-value=96 Score=23.63 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=35.7
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|+-.++-+.++-++. ||+.++.
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 45666777888999999999999998888888877765 7775544
No 26
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=40.47 E-value=43 Score=25.80 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=34.2
Q ss_pred EEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEEe
Q 027058 83 TKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVFM 127 (229)
Q Consensus 83 iklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~FM 127 (229)
+.++...+.+..+.+|.-|+.+|+-..+-+.++-++. ||+.++..
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 96 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQV 96 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEEE
Confidence 4445556677888899999999998888888887765 77776543
No 27
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=39.55 E-value=1e+02 Score=23.57 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=36.6
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|+-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQ 96 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEEE
Confidence 45667778888999999999999999998888877766 7776654
No 28
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=39.21 E-value=1e+02 Score=23.56 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=35.9
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++-
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQ 93 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 45667777888999999999999998888888877754 7776654
No 29
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=39.07 E-value=33 Score=29.01 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=24.8
Q ss_pred cccEEecCCcEEEcc-cCeecCCEEEEEcCCCeee
Q 027058 193 SKPATLDTGAVVNVP-LFVNIGDEILVDTRTGQYM 226 (229)
Q Consensus 193 ~K~A~LetG~~v~VP-~FI~~Gd~I~V~T~~g~Y~ 226 (229)
-=...+..|..|..| +-|++||.|+||.++++=+
T Consensus 100 ~~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~ 134 (213)
T 3kbg_A 100 RIQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKIS 134 (213)
T ss_dssp EEEEEETTSCEEEECCTTCCTTCEEEEETTTCCEE
T ss_pred eeEEEecCccEEEcCCCCcccCCEEEEECCCCcee
Confidence 335666788888885 3688888888888887643
No 30
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=38.92 E-value=1.1e+02 Score=23.35 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=36.6
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 45666777888999999999999999999888877765 7776655
No 31
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=38.32 E-value=27 Score=27.23 Aligned_cols=22 Identities=5% Similarity=0.247 Sum_probs=20.1
Q ss_pred cccCCccEEEECCcEEEEEEEe
Q 027058 49 NDIKVGSNIEVDGAPWRVLEFL 70 (229)
Q Consensus 49 ~dirkG~~I~~dG~py~Vv~~~ 70 (229)
.+|++|+.+.++++-|.|..+-
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaVG 74 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKVG 74 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEEC
T ss_pred CCcCCCCEEEECCEEEEEEEEh
Confidence 5899999999999999999874
No 32
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=37.61 E-value=1.3e+02 Score=22.70 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=35.1
Q ss_pred EEEEEEC-CCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNY-MSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL-~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++.. .+.+..+.+|+-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 46 ~~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (127)
T 1eal_A 46 NFTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVV 92 (127)
T ss_dssp EEEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEE
T ss_pred EEEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 3455566 6778889999999999999999888887765 7776655
No 33
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=37.31 E-value=75 Score=24.31 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=36.9
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|+-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 46677778889999999999999999998888877765 7776654
No 34
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=37.29 E-value=63 Score=24.31 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCccEEEECCcEEEEEEEeEeeCCCCceEEEEE
Q 027058 52 KVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTK 84 (229)
Q Consensus 52 rkG~~I~~dG~py~Vv~~~~~kpGKG~A~vrik 84 (229)
|+|+.+.++|+-|.|..+++. .|.-.++++
T Consensus 65 ~r~D~Vv~~Gk~y~Vtr~~~~---ngk~~i~LE 94 (102)
T 2pp6_A 65 RRGDRVVLRGSEFTVTRIRRF---NGKPQLTLE 94 (102)
T ss_dssp CTTCEEEETTEEEEEEEEEEE---TTEEEEEEE
T ss_pred CCCCEEEEcCcEEEEEEEEEE---CCcEEEEEE
Confidence 579999999999999999975 455555554
No 35
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=36.67 E-value=1.1e+02 Score=23.48 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=34.9
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE--eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK--DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~--Dgd~~~F 126 (229)
++.++...+.+..+.+|+-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~kLv~ 96 (135)
T 1vyf_A 50 KMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQ 96 (135)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCCEEEE
Confidence 35566777788899999999999998888877776654 7776654
No 36
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=35.83 E-value=1.3e+02 Score=23.16 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=35.9
Q ss_pred EEEEEEC-CCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEEe
Q 027058 82 RTKLRNY-MSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVFM 127 (229)
Q Consensus 82 riklknL-~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~FM 127 (229)
++.++.. .+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++..
T Consensus 51 ~~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 98 (136)
T 2lba_A 51 DFTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVKMEGGKIVAD 98 (136)
T ss_dssp EEEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEEESSSCEEEE
T ss_pred EEEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEEEECCEEEEE
Confidence 3455666 6778889999999999999999888887766 77766553
No 37
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=35.76 E-value=79 Score=23.90 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=35.5
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1p6p_A 46 EFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC 91 (125)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEE
Confidence 34555666778899999999999999999888888766 7776655
No 38
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=35.29 E-value=1.4e+02 Score=22.59 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=36.5
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eC-CeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DG-SMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dg-d~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. || +.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 94 (131)
T 2a0a_A 48 QYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQ 94 (131)
T ss_dssp CEEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 36677788889999999999999999888888877765 77 66655
No 39
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=33.53 E-value=1.4e+02 Score=22.85 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=34.9
Q ss_pred EEEEECCCCCEEEEEecCCCeEEEee--eeeeeeEEEEE-eCCeEEE
Q 027058 83 TKLRNYMSGTTVERTFRAGITVEEAD--VFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 83 iklknL~TG~~~e~tf~s~dkve~~~--verk~~qylY~-Dgd~~~F 126 (229)
+.++...+.+..+.+|.-|+.+|+-. ++-+.++-++. ||+.++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 49 MTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 45666777889999999999999988 88888877765 6665554
No 40
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=33.36 E-value=90 Score=23.72 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=35.7
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|+-|+.+|.-.++-+.++-++. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 93 (131)
T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH 93 (131)
T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECCEEEE
Confidence 45566777788888999999999999888888877765 7776655
No 41
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=33.16 E-value=1.2e+02 Score=23.47 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=35.3
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEE--eeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEE--ADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~--~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|+-|+.+|. -.++-+.++-++. ||+.++.
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 4556677788899999999999999 7788777776655 7776665
No 42
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=31.88 E-value=1.1e+02 Score=24.14 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=35.3
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|+-..+-+.++-++. ||+.++-
T Consensus 71 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~ 116 (154)
T 4a60_A 71 MMTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIH 116 (154)
T ss_dssp EEEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 35566667788899999999999998888888877765 7776654
No 43
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=31.45 E-value=1.4e+02 Score=23.44 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=36.0
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|+-..+-+.++-++. ||+.++-
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt~eg~kLv~ 114 (152)
T 3q6l_A 69 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 114 (152)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35666777888899999999999998888888877765 7776654
No 44
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=31.12 E-value=52 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=23.2
Q ss_pred ceEEEEEccccCCccEEE-ECC-----cEEEEEEEeEe
Q 027058 41 PRIYAFSSNDIKVGSNIE-VDG-----APWRVLEFLHV 72 (229)
Q Consensus 41 ~~~~~i~a~dirkG~~I~-~dG-----~py~Vv~~~~~ 72 (229)
.+...+.|.+|++|+.|. .+| +|.+|.+++.+
T Consensus 82 ~~~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 82 QKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp TEEEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred CcEEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 345678999999999885 444 46777777653
No 45
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=30.78 E-value=1.1e+02 Score=23.93 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=35.9
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eC-CeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DG-SMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dg-d~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|+-.++-+.++-++. || +.++.
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~ 115 (149)
T 2f73_A 69 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 115 (149)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEE
T ss_pred EEEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEE
Confidence 35566677788899999999999999999888888765 77 66654
No 46
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=30.73 E-value=1.8e+02 Score=22.12 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=35.8
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eC-CeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DG-SMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dg-d~~~F 126 (229)
++.++...+.+..+.+|+-|+.+|.-.++-+.++-++. || +.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 35566777888999999999999999888888877765 66 65554
No 47
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=30.71 E-value=1.6e+02 Score=22.74 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=35.5
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|+-..+-+.++-++. ||+.++-
T Consensus 56 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 101 (139)
T 3p6d_A 56 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 101 (139)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35666777788899999999999998888888877755 7776653
No 48
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=30.68 E-value=1.5e+02 Score=22.42 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=34.9
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEee--eeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEAD--VFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~--verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|+-|+.+|+-. ++-+.++-++. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~t~eg~kLv~ 95 (133)
T 1lpj_A 48 SFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTC 95 (133)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEEEEECCEEEE
Confidence 456667778888999999999999887 77777766655 7776655
No 49
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=30.64 E-value=1.2e+02 Score=24.19 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=35.8
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|+-..+-+.++-++. ||+.++-
T Consensus 74 ~~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~ 119 (158)
T 3rsw_A 74 ILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVH 119 (158)
T ss_dssp EEEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEEESSSEEEE
T ss_pred EEEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35567778888999999999999998888888887765 6676653
No 50
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.63 E-value=51 Score=28.81 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred ccEEecCCcEEEccc-CeecCCEEEEEcCCCee
Q 027058 194 KPATLDTGAVVNVPL-FVNIGDEILVDTRTGQY 225 (229)
Q Consensus 194 K~A~LetG~~v~VP~-FI~~Gd~I~V~T~~g~Y 225 (229)
=...+..|..|.+|. -|++||.|+||.++++=
T Consensus 137 pql~tHDGrti~~~dp~ik~~DTv~idl~~~kI 169 (265)
T 3iz6_D 137 PYLNTYDGRTIRYPDPIIKANDTIKIDLETNKI 169 (265)
T ss_dssp CEEEETTSCCCBSCSSCCCTTCEEEECSSSCCE
T ss_pred eEEEeecceEEecCCCCcccCCEEEEECCCCce
Confidence 356677888887764 68888888888887764
No 51
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=30.54 E-value=1.4e+02 Score=22.71 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=34.6
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eC-CeEEEe
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DG-SMFVFM 127 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dg-d~~~FM 127 (229)
++.++...+.+..+.+|.-|+.+|.-.++-+.++-++. || +.++-.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~egd~kLv~~ 97 (132)
T 3vg7_A 50 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTT 97 (132)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECEESSTTEEEEE
T ss_pred EEEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEEEecCCeEEEE
Confidence 34455566677789999999999999888888887754 66 566543
No 52
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=30.08 E-value=1.1e+02 Score=23.77 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=35.1
Q ss_pred EEEEEECCC-CCEEEEEecCCCeEEEeeeeeeeeEEEEE-eCCeEEEe
Q 027058 82 RTKLRNYMS-GTTVERTFRAGITVEEADVFKETKQFTYK-DGSMFVFM 127 (229)
Q Consensus 82 riklknL~T-G~~~e~tf~s~dkve~~~verk~~qylY~-Dgd~~~FM 127 (229)
++.++...+ .+..+.+|.-|+.+|.-.++-+.++-++. ||+.++..
T Consensus 50 ~~tikt~s~~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 97 (138)
T 3elx_A 50 DFTWTQYYPNNHVVTNKFIVGKESDMETVGGKKFKGIVSMEGGKLTIS 97 (138)
T ss_dssp EEEEEEEEGGGEEEEEEEETTSCEEEECTTSCEEEECCEEETTEEEEE
T ss_pred EEEEEEEEcCCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEEE
Confidence 345555666 67888999999999998888888887754 77776643
No 53
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=30.02 E-value=55 Score=22.66 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=23.4
Q ss_pred eeeecCccchhhhhhccCCCCeEEEEEECCeEE
Q 027058 133 EEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165 (229)
Q Consensus 133 EQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i 165 (229)
-|+.||++... ++ =|.+|.+|.+...+|+++
T Consensus 13 ~~v~iPk~~~~-~l-gl~~gd~v~i~~~~~~ii 43 (82)
T 1mvf_D 13 PAVRIPATLMQ-AL-NLNIDDEVKIDLVDGKLI 43 (82)
T ss_dssp EEEECCHHHHH-HT-TCCTTCBEEEEEETTEEE
T ss_pred cEEEECHHHHH-Hc-CCCCCCEEEEEEECCEEE
Confidence 48899987753 22 378999999988888754
No 54
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=29.97 E-value=1.2e+02 Score=23.02 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=35.8
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEE--eeeeeeeeEEEEE-eCCeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEE--ADVFKETKQFTYK-DGSMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~--~~verk~~qylY~-Dgd~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|. -.++-+.++-++. ||+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 4566777888899999999999999 8888887777755 7776654
No 55
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=29.67 E-value=68 Score=23.26 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=31.0
Q ss_pred EEEccccCCccEEEECCcEEEEEEEeEee---CCCC--ceEEEEEEEECCCCCEEEEEec
Q 027058 45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVK---PGKG--AAFVRTKLRNYMSGTTVERTFR 99 (229)
Q Consensus 45 ~i~a~dirkG~~I~~dG~py~Vv~~~~~k---pGKG--~A~vriklknL~TG~~~e~tf~ 99 (229)
+..+++|++|..+.+ .++|.+....+ ..+| ..+..+.+.| .||.+.=.-|.
T Consensus 7 ~~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~ 62 (115)
T 2k50_A 7 MDTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWT 62 (115)
T ss_dssp CCCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEET
T ss_pred eEEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeC
Confidence 456889999988754 45566652222 2235 5677788888 67744333343
No 56
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=28.40 E-value=52 Score=23.02 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=33.6
Q ss_pred EEeCCeEEEecCCC-ceeeecCccchhhh-----hhccCCCCeEEEEEECC----eEEEEECC
Q 027058 118 YKDGSMFVFMDLTT-FEEVRLNETDVGDK-----KKWLKEGMDCNLLFWKG----KIIDFEVP 170 (229)
Q Consensus 118 Y~Dgd~~~FMD~et-yEQi~v~~~~lgd~-----~~fL~eG~~v~v~~~~g----~~i~v~lP 170 (229)
|.+...|=|..+++ -+++-+....|... .+-|.+|+.|+....++ +.+.|..|
T Consensus 16 fn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~~p 78 (79)
T 1h95_A 16 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP 78 (79)
T ss_dssp EETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSSEEEESBCCC
T ss_pred EECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCCceeEEEECc
Confidence 33445676776654 47888877776542 45689999988776543 34444444
No 57
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=27.94 E-value=48 Score=24.76 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=32.5
Q ss_pred EEEECCc----eEEEEEEEcCCCcccccCCCCcccEEecCCcEEEc--c------cCeecCCEEEEEcC
Q 027058 165 IDFEVPI----TVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNV--P------LFVNIGDEILVDTR 221 (229)
Q Consensus 165 i~v~lP~----~V~l~V~et~p~~kgdta~~~~K~A~LetG~~v~V--P------~FI~~Gd~I~V~T~ 221 (229)
..+.+|. .+.-+|++.-|+ ..=.+.|+||.++.+ | ..|..||+|.|...
T Consensus 10 ~~~~~P~~~e~e~~g~V~~~lgn--------~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 10 IRVRIPRKEENEILGIIEQMLGA--------SRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp CCCCCSCCSSCCEEEEEECSSCS--------SEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred eecccCCCCCCEEEEEEEEEcCC--------CEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEec
Confidence 3455655 455666666443 245788899988754 3 45889999999754
No 58
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=27.93 E-value=55 Score=28.53 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=22.0
Q ss_pred cEEecCCcEEEccc-CeecCCEEEEEcCCCee
Q 027058 195 PATLDTGAVVNVPL-FVNIGDEILVDTRTGQY 225 (229)
Q Consensus 195 ~A~LetG~~v~VP~-FI~~Gd~I~V~T~~g~Y 225 (229)
...+..|..|..|. -|++||.|+||.++++=
T Consensus 138 ql~tHDGrti~~~dp~ik~~Dtv~idl~~~kI 169 (261)
T 3u5c_E 138 YVVTHDGRTIRYPDPNIKVNDTVKIDLASGKI 169 (261)
T ss_dssp EEEETTTEEEESCCSSCCTTCEEEECSSSSCE
T ss_pred EEEEecceEEecCCCCcccCCEEEEECCCCce
Confidence 45667777777754 57788888888777753
No 59
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.64 E-value=37 Score=29.32 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=19.5
Q ss_pred EEecCCcEEEcc----cCeecCCEEEEEcCCCee
Q 027058 196 ATLDTGAVVNVP----LFVNIGDEILVDTRTGQY 225 (229)
Q Consensus 196 A~LetG~~v~VP----~FI~~Gd~I~V~T~~g~Y 225 (229)
..+..|..|.+| +-|++||.|+||.++++=
T Consensus 140 l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI 173 (243)
T 3j20_E 140 LNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREI 173 (243)
T ss_dssp ECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEE
T ss_pred EEecCCceEEcccccCCCcccCCEEEEECCCCCe
Confidence 455666666665 466777777777776653
No 60
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=27.44 E-value=53 Score=28.61 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=14.8
Q ss_pred EEecCCcEEEcc-cCeecCCEEEEEcCCCe
Q 027058 196 ATLDTGAVVNVP-LFVNIGDEILVDTRTGQ 224 (229)
Q Consensus 196 A~LetG~~v~VP-~FI~~Gd~I~V~T~~g~ 224 (229)
..+..|..|..| +-|++||.|+||.++++
T Consensus 141 l~~HDGrti~~~d~~ik~~Dtv~idl~~~k 170 (260)
T 2xzm_W 141 IVTHDSRTIRFPNPEIKIGDTLKYDLVNNK 170 (260)
T ss_dssp EEETTTEEEESCCSSCCTTBEEEEETTTTE
T ss_pred EEecCCceEeccCCcCccCCeEEEeCCCCc
Confidence 344455555544 24455555555555554
No 61
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=26.77 E-value=1.1e+02 Score=22.64 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=28.0
Q ss_pred hhhcccccccCCCCccCCCCCCCCCceEEEEEcc-------------ccCCccEEEEC
Q 027058 16 LLRRSSFTTLSSKPSVLPMRPRSKFPRIYAFSSN-------------DIKVGSNIEVD 60 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a~-------------dirkG~~I~~d 60 (229)
|+++...-.-.+.|-++|+-++.+......+.++ ++|.|+.|.+.
T Consensus 16 lVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~ 73 (100)
T 1we3_O 16 VVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFA 73 (100)
T ss_dssp EEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEEC
T ss_pred EEEEccccccccceEEeCcccccCCcCCEEEEECCCcCCCCCCEEeeecCCCCEEEEC
Confidence 3444444445577888998777776653333222 58888888774
No 62
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=26.18 E-value=97 Score=20.71 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=30.3
Q ss_pred EEeCCeEEEecCCCceeeecCccchhhh-hhccCCCCeEEEEEECC
Q 027058 118 YKDGSMFVFMDLTTFEEVRLNETDVGDK-KKWLKEGMDCNLLFWKG 162 (229)
Q Consensus 118 Y~Dgd~~~FMD~etyEQi~v~~~~lgd~-~~fL~eG~~v~v~~~~g 162 (229)
|.+...|=|..++.-+++-+....+... ..-|.+|+.|+....++
T Consensus 8 fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 53 (66)
T 1g6p_A 8 FDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEG 53 (66)
T ss_dssp EETTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECS
T ss_pred EECCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEEC
Confidence 3444556666555557888887776542 36799999999877654
No 63
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=25.70 E-value=25 Score=22.68 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=22.7
Q ss_pred CceeeecCccchhhhhhccCCCCeEEEEEECCe
Q 027058 131 TFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGK 163 (229)
Q Consensus 131 tyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~ 163 (229)
.--|+.||++... ++ -|++|+.+.+...+|.
T Consensus 10 ~kgqi~IPk~ir~-~l-gi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 10 RNYQVTIPAKVRQ-KF-QIKEGDLVKVTFDESE 40 (53)
T ss_dssp SSSCBCCCHHHHH-HS-CCCTTCEEEEEECSSS
T ss_pred CCCEEEeCHHHHH-Hc-CcCCCCEEEEEEECCE
Confidence 3458899987752 22 3799999999887775
No 64
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.17 E-value=1.5e+02 Score=22.33 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=11.2
Q ss_pred cCeecCCEEEEEcC
Q 027058 208 LFVNIGDEILVDTR 221 (229)
Q Consensus 208 ~FI~~Gd~I~V~T~ 221 (229)
..|..||+|.|...
T Consensus 52 IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 52 IWIKRGDFLIVDPI 65 (111)
T ss_dssp CCCCSSCEEEEEEC
T ss_pred EEEcCCCEEEEEec
Confidence 46888999999764
No 65
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=24.31 E-value=1.9e+02 Score=21.28 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=25.5
Q ss_pred hhcccccccCCCCccCCCCCCCCCceEEEEEcc--------------ccCCccEEEE
Q 027058 17 LRRSSFTTLSSKPSVLPMRPRSKFPRIYAFSSN--------------DIKVGSNIEV 59 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a~--------------dirkG~~I~~ 59 (229)
+++...-.-.+.|-++|+-++.+......+.++ ++|.|+.|.+
T Consensus 14 Vk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf 70 (99)
T 1p3h_A 14 VQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIY 70 (99)
T ss_dssp EEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEE
T ss_pred EEEccccccccceEEeCcccccCCceEEEEEECCCcCcCCCCEEEccccCCCCEEEE
Confidence 344444445577888998777665543222221 4778877765
No 66
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=22.79 E-value=2e+02 Score=20.16 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=28.8
Q ss_pred ccccCCccEEEECCcEEEEEEE-eEeeCCCCceEEEEEEEEC
Q 027058 48 SNDIKVGSNIEVDGAPWRVLEF-LHVKPGKGAAFVRTKLRNY 88 (229)
Q Consensus 48 a~dirkG~~I~~dG~py~Vv~~-~~~kpGKG~A~vriklknL 88 (229)
..+|..++.|.++|+.|.|..+ ... ..++-++.+.++-.
T Consensus 65 ~~~i~~~~ri~~~g~~y~I~~v~~~~--~~~~~~l~i~~~~~ 104 (109)
T 2kca_A 65 DDRIDKKMRVIYRGKIVTFIGDPVDL--SGLQEITRIKGKED 104 (109)
T ss_dssp CCCSSSSEEEEETTEEEEEEEEEEEC--CTTTCEEEEEEECC
T ss_pred CCCCCCccEEEECCEEEEEEEeccCc--ccCcEEEEEEEEEc
Confidence 4689999999999999999998 543 23344666666543
No 67
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=22.56 E-value=49 Score=25.21 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=33.4
Q ss_pred EEEeeeeeeeeEEEEE----------eCCeEEEecCCCceeeecCccchhhhh-hccCCCCeEEE
Q 027058 104 VEEADVFKETKQFTYK----------DGSMFVFMDLTTFEEVRLNETDVGDKK-KWLKEGMDCNL 157 (229)
Q Consensus 104 ve~~~verk~~qylY~----------Dgd~~~FMD~etyEQi~v~~~~lgd~~-~fL~eG~~v~v 157 (229)
++.+.+.|+.+...|. +++.|++.|..+-.=..|....+.... .-|++|+.+.+
T Consensus 55 l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 55 LEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp CCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEE
T ss_pred eCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECCCCceeECCCCCEEEE
Confidence 3445677877777653 456788899765445556665554432 24788888764
No 68
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=22.14 E-value=35 Score=24.68 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=35.0
Q ss_pred EEEeeeeeeeeEEEEEeCCeEEEecCCCceeeecCccchhhhhhccCCCCeEEE
Q 027058 104 VEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNL 157 (229)
Q Consensus 104 ve~~~verk~~qylY~Dgd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v 157 (229)
++...+.++.+++.+..++.|.+.|...-.-..|....+.. ...|++|+.+.+
T Consensus 40 l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i~~-~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 40 LSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIEH-QSTLSANQVVAL 92 (106)
T ss_dssp CCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEECSS-EEECCTTCCEEE
T ss_pred eCCCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEECCC-CeECCCCCEEEE
Confidence 44567888999888875566999998544444455555543 235788887664
No 69
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=22.10 E-value=1.1e+02 Score=23.30 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=33.5
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEE-eC-CeEEE
Q 027058 82 RTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYK-DG-SMFVF 126 (229)
Q Consensus 82 riklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~-Dg-d~~~F 126 (229)
++.++...+.+..+.+|.-|+.+|+-.++-+.++-++. || +.++.
T Consensus 49 ~~tikt~s~~kt~~~~F~lGeEfee~t~dgrk~ks~~t~egd~kLv~ 95 (137)
T 2g7b_A 49 TFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVC 95 (137)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEECCeEEEEEEecCCceEEECCCCCEEEEEEEEeCCCeEEE
Confidence 34555566677888999999999998888888877655 65 45544
No 70
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=21.68 E-value=49 Score=25.63 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.1
Q ss_pred cCeecCCEEEEEcCCCeeeec
Q 027058 208 LFVNIGDEILVDTRTGQYMTR 228 (229)
Q Consensus 208 ~FI~~Gd~I~V~T~~g~Y~~R 228 (229)
+=|+.||+|+|.++.|+..-|
T Consensus 65 lGI~dGd~V~V~s~~G~v~~~ 85 (146)
T 2ki8_A 65 LGLQEGDRVKVKTEFGEVVVF 85 (146)
T ss_dssp HTCCTTCEEEEECSSCEEEEE
T ss_pred cCCCCCCEEEEEeCCcEEEEE
Confidence 357889999999999986544
No 71
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=21.17 E-value=96 Score=24.94 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=31.1
Q ss_pred hccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCCcEEEc
Q 027058 147 KWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNV 206 (229)
Q Consensus 147 ~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG~~v~V 206 (229)
.=+.+|+.+.++.+.. ..+.++|+.|+|. ...+.+.++.+|.|
T Consensus 133 R~v~~G~~i~v~~~g~--------~~i~f~V~~~~P~---------~~~v~It~~TeI~v 175 (179)
T 1wlf_A 133 RIVFPKAVVPIWVDQQ--------TYIFIQIVTLMPA---------APYGRLETNTKLLI 175 (179)
T ss_dssp CEECTTCEEEEESSSS--------CEEEEEEEEEESC---------CSSEECCTTCEEEE
T ss_pred eeccCCCEEEEEecCC--------eEEEEEEEEeeCC---------CCeEEECCCcEEEE
Confidence 3356677777655333 7889999999993 24788888888877
No 72
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=20.92 E-value=91 Score=25.04 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=28.3
Q ss_pred EccccCCccEEEECC---cEEEEEEEeEeeCC---------CCceEEEEEE
Q 027058 47 SSNDIKVGSNIEVDG---APWRVLEFLHVKPG---------KGAAFVRTKL 85 (229)
Q Consensus 47 ~a~dirkG~~I~~dG---~py~Vv~~~~~kpG---------KG~A~vrikl 85 (229)
..=|||.||+|..|| -+|.|+.+.+.-++ +|.+.|.++-
T Consensus 60 k~LeLRiGD~VKVd~vpK~~hiVvGf~~~l~~~~~~~~TDi~Gh~tViL~~ 110 (153)
T 2fhd_A 60 KRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILAH 110 (153)
T ss_dssp EESCCCTTCEEEETTSTTCCEEEEEEECCCSSCCCGGGCCTTCCCEEEEEE
T ss_pred eeeeeecCCEEEECCCCCccEEEEEecccccccccceeeeecCceEEEEcc
Confidence 346899999999997 48999999853322 3666665444
No 73
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=20.86 E-value=2.4e+02 Score=21.94 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=36.2
Q ss_pred EEEEccccCCccEEEECCcE-EEEEEEeEeeCCCCceEEEEEEEECCCCCEEEE-EecCCCeEEEeeeeeeeeEEEEEeC
Q 027058 44 YAFSSNDIKVGSNIEVDGAP-WRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVER-TFRAGITVEEADVFKETKQFTYKDG 121 (229)
Q Consensus 44 ~~i~a~dirkG~~I~~dG~p-y~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~-tf~s~dkve~~~verk~~qylY~Dg 121 (229)
|.+-...++.|++|.-..+. -. ....++|. -+-|+|+--|..+.. -.+.++.=.-+.=.-.-+|.+.+|+
T Consensus 25 yIlAp~gl~~Gd~I~s~~~~g~~---a~~i~~GN-----~lpL~~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~ke~ 96 (136)
T 2ftc_B 25 WIIATENMQAGDTILNSNHIGRM---AVAAREGD-----AHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVN 96 (136)
T ss_pred EEEeecCCcCCCEEEECCccccc---ccccCcCc-----EEEecccCCCCEEEEEeccCCCCcEEEEeCCCeEEEEEecC
Confidence 67777888888888763220 00 00134444 455666666665544 2344444333444444555555554
No 74
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=20.17 E-value=2.2e+02 Score=19.56 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=31.6
Q ss_pred EEeCCeEEEecCCCceeeecCccchh--hhhhccCCCCeEEEEEECC
Q 027058 118 YKDGSMFVFMDLTTFEEVRLNETDVG--DKKKWLKEGMDCNLLFWKG 162 (229)
Q Consensus 118 Y~Dgd~~~FMD~etyEQi~v~~~~lg--d~~~fL~eG~~v~v~~~~g 162 (229)
|.+...|=|..+++-+++-+....+. +...-|.+|+.|+....++
T Consensus 8 fn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 8 YLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp EETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred EECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 34445666666554488988888775 3346799999999877654
No 75
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=20.14 E-value=1.4e+02 Score=21.06 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.4
Q ss_pred ccccCCccEEEE-----CCcEEEEEEEeEeeCCCCc
Q 027058 48 SNDIKVGSNIEV-----DGAPWRVLEFLHVKPGKGA 78 (229)
Q Consensus 48 a~dirkG~~I~~-----dG~py~Vv~~~~~kpGKG~ 78 (229)
.+.|+.|+.|.+ +|.-|.|.+++...|++|+
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~~~~~~~ 80 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAPQVQTAGA 80 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEECCSSCCC
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEecCCCCCC
Confidence 578999999875 3326999999887776643
Done!